[Met_help] [rt.rap.ucar.edu #55513] History for MET installation aborts
John Halley Gotway via RT
met_help at ucar.edu
Thu Mar 29 16:45:41 MDT 2012
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Dear met_help team,
I'm desperated with METv3.1 installation on a
Linux Debian Squeeze i686. I've installed NetCDF, BUFRLIB and GSL with
Intel ifort and icc compilers, but i'm not able to do so for MET. I've
tried a lot of FLAGS in user_defs.mk, but installation always aborts.
Please, find attached my user_defs.mk and make_met.log files. Let me
know if you need any more information.
Thank you,
Manuel
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #55483] MET installation aborts
From: Anne Holmes
Time: Tue Mar 27 13:11:05 2012
Manuel,
I see that your email address is not currently a registered user of
the
MET software. Prior to providing direct support in the use of MET, we
require that users fill out the free online registration form. That
enables us to ensure that we remain in compliance with the
international
export laws of the United States. To fill out the registration, just
go
here:
http://www.dtcenter.org/met/users/downloads/index.php
Enter your email address and hit enter to be taken to the form.
If you have already registered under another email address then you
may
resend your help inquiry under that email address. Sorry for the
inconvenience.
Anne
On 03/26/2012 07:38 PM, bernalmm at us.es via RT wrote:
>
> Mon Mar 26 19:38:32 2012: Request 55483 was acted upon.
> Transaction: Ticket created by bernalmm at us.es
> Queue: met_help
> Subject: MET installation aborts
> Owner: Nobody
> Requestors: bernalmm at us.es
> Status: new
> Ticket<URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55483>
>
>
>
>
> Dear met_help team,
>
> I'm desperated with METv3.1 installation on a
> Linux Debian Squeeze i686. I've installed NetCDF, BUFRLIB and GSL
with
> Intel ifort and icc compilers, but i'm not able to do so for MET.
I've
> tried a lot of FLAGS in user_defs.mk, but installation always
aborts.
> Please, find attached my user_defs.mk and make_met.log files. Let me
> know if you need any more information.
>
> Thank you,
>
> Manuel
>
------------------------------------------------
Subject: MET installation aborts
From: bernalmm at us.es
Time: Tue Mar 27 15:56:03 2012
There is no inconvenience, Anne. I'll do use of my registered mail
address for the inquiry,
Many thanks,
On Tue, 27 Mar 2012 13:11:06
-0600, Anne Holmes via RT wrote:
> Manuel,
>
> I see that your email
address is not currently a registered user of the
> MET software. Prior
to providing direct support in the use of MET, we
> require that users
fill out the free online registration form. That
> enables us to ensure
that we remain in compliance with the international
> export laws of
the United States. To fill out the registration, just go
> here:
>
http://www.dtcenter.org/met/users/downloads/index.php [3]
> Enter your
email address and hit enter to be taken to the form.
>
> If you have
already registered under another email address then you may
> resend
your help inquiry under that email address. Sorry for the
>
inconvenience.
>
> Anne
>
> On 03/26/2012 07:38 PM, bernalmm at us.es
[4]via RT wrote:
>
>> Mon Mar 26 19:38:32 2012: Request 55483 was acted
upon. Transaction: Ticket created by bernalmm at us.es [1] Queue:
met_help
Subject: MET installation aborts Owner: Nobody Requestors:
bernalmm at us.es [2] Status: new
Tickethttps://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55483> Dear
met_help team, I'm desperated with METv3.1 installation on a Linux
Debian Squeeze i686. I've installed NetCDF, BUFRLIB and GSL with Intel
ifort and icc compilers, but i'm not able to do so for MET. I've tried
a
lot of FLAGS in user_defs.mk, but installation always aborts. Please,
find attached my user_defs.mk and make_met.log files. Let me know if
you
need any more information. Thank you, Manuel
Links:
------
[1]
mailto:bernalmm at us.es
[2] mailto:bernalmm at us.es
[3]
http://www.dtcenter.org/met/users/downloads/index.php
[4]
mailto:bernalmm at us.es
------------------------------------------------
Subject: MET installation aborts
From: John Halley Gotway
Time: Wed Mar 28 09:13:44 2012
Manuel,
I took a look at the files you sent and see the problem. Looks like
there are several warnings, but that's not what's causing the error.
At the end of the make_met.log file is this error:
ld: /usr/include: No such file: File format not recognized
Looking in the user_def.mk file he sent, and searching for where
"/usr/include" is defined, I see it here:
F2C_INCS = /usr/include
F2C_LIBS = /usr/lib
And that's where the problem is. These should be preceeded by a -I
and -L, like this:
F2C_INCS = -I/usr/include
F2C_LIBS = -L/usr/lib
This is discussed in the online tutorial on this page:
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php
However, in my experience, the F2C library is not typically required
when compiling with the Intel compilers. That's why those settings
are blank in the default "user_defs_intel.mk" file.
I've made a copy of the default Intel file and have modified it using
your settings. Can you please try using the attached file to build
MET? If you experience an error, please send me back the
"make_met.log" file.
Just put the attached file into the top-level MET directory, and
execute these commands:
cp user_defs_new.mk user_defs.mk
make clean
make >& make_met.log
I'm hopeful we can get this all figured out.
Thanks,
John Halley Gotway
met_help at ucar.edu
On 03/28/2012 03:15 AM, M Bernal via RT wrote:
>
> Wed Mar 28 03:15:39 2012: Request 55513 was acted upon.
> Transaction: Ticket created by everevee at yahoo.es
> Queue: met_help
> Subject: MET installation aborts
> Owner: Nobody
> Requestors: everevee at yahoo.es
> Status: new
> Ticket<URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513>
>
>
> Dear met_help team,
> I'm desperated with METv3.1 installation on a Linux Debian Squeeze
i686. I've installed NetCDF, BUFRLIB and GSL with Intel ifort and icc
compilers, but i'm not able to do so for MET. I've tried different
FLAGS in user_defs.mk, but installation always aborts and don't
produce executables. Please, find attached my user_defs.mk and
make_met.log files. Let me know if you need any other information.
> Thank you,
> Manuel
------------------------------------------------
Subject: MET installation aborts
From: John Halley Gotway
Time: Wed Mar 28 09:13:44 2012
###############################################################################
##
## Begin Variables to be modified before building
## Default settings for Intel compilers
##
###############################################################################
# Path to GNU Make command
MAKE = /usr/bin/make
# Architecture flags
ARCH_FLAGS = -DBLOCK4
# Path to the C++ Compiler
# C++ compiler flags
# Any additional required libraries
CXX = /opt/intel/composer_xe_2011_sp1.8.273/bin/ia32/icpc
CXX_FLAGS = -Wshadow -static # -g
CXX_LIBS =
# Path to the Fortran Compiler
# Fortran compiler flags
# Any additional required libraries
FC = /opt/intel/composer_xe_2011_sp1.8.273/bin/ia32/ifort
FC_FLAGS = -static # -g
FC_LIBS = -lifcore
# Make print options
PRINT_OPTS = --no-print-directory
# Top level directory for the NetCDF library
# NetCDF include directory specified as: -I/your/include/path
# NetCDF library directory specified as: -L/your/library/path
NETCDF_BASE = /opt/netcdf
NETCDF_INCS = -I$(NETCDF_BASE)/include
NETCDF_LIBS = -L$(NETCDF_BASE)/lib
# Top level directory for BUFRLIB
# BUFRLIB include directory specified as: -I/your/include/path
# BUFRLIB library directory specified as: -L/your/library/path
BUFR_BASE = /opt/BUFRLIB
BUFR_INCS = -I$(BUFR_BASE)
BUFR_LIBS = -L$(BUFR_BASE)
# Top level directory for the GNU Scientific Library (GSL) if it's not
# installed in a standard location.
# GSL include directory specified as: -I/your/include/path
# GSL library directory specified as: -L/your/library/path
GSL_BASE = /opt/gsl-1.15
GSL_INCS = -I$(GSL_BASE)/include
GSL_LIBS = -L$(GSL_BASE)/lib
# Top level directory for the F2C or G2C Library if it's not installed
in a
# standard location.
# F2C include directory specified as: -I/your/include/path
# F2C library directory containing libf2c.a or libg2c.a and specified
as:
# -L/your/library/path
# Name of the library to be used: -lf2c or -lg2c
# NOTE: Not typically required for the Intel ifort Fortran compiler
F2C_BASE =
F2C_INCS =
F2C_LIBS =
F2C_LIBNAME =
# Optional flags to disable the compilation of MET tools
# Specify a non-zero value to enable the compilation of the tool
ENABLE_ASCII2NC = 1
ENABLE_ENSEMBLE_STAT = 1
ENABLE_GEN_POLY_MASK = 1
ENABLE_GRID_STAT = 1
ENABLE_MADIS2NC = 1
ENABLE_MODE = 1
ENABLE_MODE_ANALYSIS = 1
ENABLE_PB2NC = 1
ENABLE_PCP_COMBINE = 1
ENABLE_PLOT_DATA_PLANE = 1
ENABLE_PLOT_POINT_OBS = 1
ENABLE_POINT_STAT = 1
ENABLE_STAT_ANALYSIS = 1
ENABLE_WAVELET_STAT = 1
ENABLE_WWMCA = 1
###############################################################################
##
## End Variables to be modified before building
##
###############################################################################
------------------------------------------------
Subject: MET installation aborts
From: bernalmm at us.es
Time: Wed Mar 28 17:34:35 2012
Hi John,
Thanks a lot. It works fine wih the intel default
settings. Now I have my MET compiled and all the executables were
created. I've also successfully run the test_all.sh script. Now I'll
try
MET tools for a real-data verification case.
Thanks for your help,
Manuel
On Wed, 28 Mar 2012 09:13:44 -0600, John Halley Gotway via RT
wrote:
> Manuel,
>
> I took a look at the files you sent and see the
problem. Looks like there are several warnings, but that's not what's
causing the error. At the end of the make_met.log file is this error:
>
> ld: /usr/include: No such file: File format not recognized
>
>
Looking in the user_def.mk file he sent, and searching for where
>
"/usr/include" is defined, I see it here:
> F2C_INCS = /usr/include
>
F2C_LIBS = /usr/lib
>
> And that's where the problem is. These should
be preceeded by a -I and -L, like this:
> F2C_INCS = -I/usr/include
>
F2C_LIBS = -L/usr/lib
>
> This is discussed in the online tutorial on
this page:
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php
[3]
>
> However, in my experience, the F2C library is not typically
required when compiling with the Intel compilers. That's why those
settings are blank in the default "user_defs_intel.mk" file.
>
> I've
made a copy of the default Intel file and have modified it using your
settings. Can you please try using the attached file to build MET? If
you experience an error, please send me back the
> "make_met.log"
file.
>
> Just put the attached file into the top-level MET directory,
and execute these commands:
> cp user_defs_new.mk user_defs.mk
> make
clean
> make >& make_met.log
>
> I'm hopeful we can get this all
figured out.
>
> Thanks,
> John Halley Gotway
> met_help at ucar.edu [4]On
03/28/2012 03:15 AM, M Bernal via RT wrote:
>
>> Wed Mar 28 03:15:39
2012: Request 55513 was acted upon. Transaction: Ticket created by
everevee at yahoo.es [1] Queue: met_help Subject: MET installation aborts
Owner: Nobody Requestors: everevee at yahoo.es [2] Status: new
Tickethttps://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513> Dear
met_help team, I'm desperated with METv3.1 installation on a Linux
Debian Squeeze i686. I've installed NetCDF, BUFRLIB and GSL with Intel
ifort and icc compilers, but i'm not able to do so for MET. I've tried
different FLAGS in user_defs.mk, but installation always aborts and
don't produce executables. Please, find attached my user_defs.mk and
make_met.log files. Let me know if you need any other information.
Thank
you, Manuel
Links:
------
[1] mailto:everevee at yahoo.es
[2]
mailto:everevee at yahoo.es
[3]
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php
[4]
mailto:met_help at ucar.edu
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #55513] MET installation aborts
From: John Halley Gotway
Time: Wed Mar 28 20:37:26 2012
Manuel,
Great, glad that did the trick. If you have not already done so,
please
retrieve the latest set of patches for METv3.1 from here:
http://www.dtcenter.org/met/users/support/known_issues/METv3.1/index.php
Just follow the instructions on that page to apply the patches.
Actually, we'll be posting a new bugfix by 5pm MST tomorrow that
affects
the pcp_combine "-add" option. So you could wait until tomorrow
afternoon
to retrieve the latest set of patches.
Thanks,
John
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513 >
>
>
>
> Hi John,
>
> Thanks a lot. It works fine wih the intel default
> settings. Now I have my MET compiled and all the executables were
> created. I've also successfully run the test_all.sh script. Now I'll
try
> MET tools for a real-data verification case.
>
> Thanks for your help,
>
>
> Manuel
>
> On Wed, 28 Mar 2012 09:13:44 -0600, John Halley Gotway via RT
> wrote:
>
>> Manuel,
>>
>> I took a look at the files you sent and see the
> problem. Looks like there are several warnings, but that's not
what's
> causing the error. At the end of the make_met.log file is this
error:
>>
>
>> ld: /usr/include: No such file: File format not recognized
>>
>>
> Looking in the user_def.mk file he sent, and searching for where
>>
> "/usr/include" is defined, I see it here:
>> F2C_INCS = /usr/include
>>
> F2C_LIBS = /usr/lib
>>
>> And that's where the problem is. These should
> be preceeded by a -I and -L, like this:
>> F2C_INCS = -I/usr/include
>>
> F2C_LIBS = -L/usr/lib
>>
>> This is discussed in the online tutorial on
> this page:
>>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php
> [3]
>>
>> However, in my experience, the F2C library is not typically
> required when compiling with the Intel compilers. That's why those
> settings are blank in the default "user_defs_intel.mk" file.
>>
>> I've
> made a copy of the default Intel file and have modified it using
your
> settings. Can you please try using the attached file to build MET?
If
> you experience an error, please send me back the
>> "make_met.log"
> file.
>>
>> Just put the attached file into the top-level MET directory,
> and execute these commands:
>> cp user_defs_new.mk user_defs.mk
>> make
> clean
>> make >& make_met.log
>>
>> I'm hopeful we can get this all
> figured out.
>>
>> Thanks,
>> John Halley Gotway
>> met_help at ucar.edu [4]On
> 03/28/2012 03:15 AM, M Bernal via RT wrote:
>>
>>> Wed Mar 28 03:15:39
> 2012: Request 55513 was acted upon. Transaction: Ticket created by
> everevee at yahoo.es [1] Queue: met_help Subject: MET installation
aborts
> Owner: Nobody Requestors: everevee at yahoo.es [2] Status: new
> Tickethttps://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513> Dear
> met_help team, I'm desperated with METv3.1 installation on a Linux
> Debian Squeeze i686. I've installed NetCDF, BUFRLIB and GSL with
Intel
> ifort and icc compilers, but i'm not able to do so for MET. I've
tried
> different FLAGS in user_defs.mk, but installation always aborts and
> don't produce executables. Please, find attached my user_defs.mk and
> make_met.log files. Let me know if you need any other information.
Thank
> you, Manuel
>
>
> Links:
> ------
> [1] mailto:everevee at yahoo.es
> [2]
> mailto:everevee at yahoo.es
> [3]
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php
> [4]
> mailto:met_help at ucar.edu
>
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #55513] MET installation aborts
From: John Halley Gotway
Time: Thu Mar 29 10:19:18 2012
Manuel,
OK, the updated set of patches is now posted on the MET website:
http://www.dtcenter.org/met/users/support/known_issues/METv3.1/index.php
I'll go ahead and resolve this ticket.
Thanks,
John
On 03/28/2012 08:37 PM, John Halley Gotway wrote:
> Manuel,
>
> Great, glad that did the trick. If you have not already done so,
please
> retrieve the latest set of patches for METv3.1 from here:
>
http://www.dtcenter.org/met/users/support/known_issues/METv3.1/index.php
>
> Just follow the instructions on that page to apply the patches.
>
> Actually, we'll be posting a new bugfix by 5pm MST tomorrow that
affects
> the pcp_combine "-add" option. So you could wait until tomorrow
afternoon
> to retrieve the latest set of patches.
>
> Thanks,
> John
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513>
>>
>>
>>
>> Hi John,
>>
>> Thanks a lot. It works fine wih the intel default
>> settings. Now I have my MET compiled and all the executables were
>> created. I've also successfully run the test_all.sh script. Now
I'll try
>> MET tools for a real-data verification case.
>>
>> Thanks for your help,
>>
>>
>> Manuel
>>
>> On Wed, 28 Mar 2012 09:13:44 -0600, John Halley Gotway via RT
>> wrote:
>>
>>> Manuel,
>>>
>>> I took a look at the files you sent and see the
>> problem. Looks like there are several warnings, but that's not
what's
>> causing the error. At the end of the make_met.log file is this
error:
>>>
>>
>>> ld: /usr/include: No such file: File format not recognized
>>>
>>>
>> Looking in the user_def.mk file he sent, and searching for where
>>>
>> "/usr/include" is defined, I see it here:
>>> F2C_INCS = /usr/include
>>>
>> F2C_LIBS = /usr/lib
>>>
>>> And that's where the problem is. These should
>> be preceeded by a -I and -L, like this:
>>> F2C_INCS = -I/usr/include
>>>
>> F2C_LIBS = -L/usr/lib
>>>
>>> This is discussed in the online tutorial on
>> this page:
>>>
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php
>> [3]
>>>
>>> However, in my experience, the F2C library is not typically
>> required when compiling with the Intel compilers. That's why those
>> settings are blank in the default "user_defs_intel.mk" file.
>>>
>>> I've
>> made a copy of the default Intel file and have modified it using
your
>> settings. Can you please try using the attached file to build MET?
If
>> you experience an error, please send me back the
>>> "make_met.log"
>> file.
>>>
>>> Just put the attached file into the top-level MET directory,
>> and execute these commands:
>>> cp user_defs_new.mk user_defs.mk
>>> make
>> clean
>>> make>& make_met.log
>>>
>>> I'm hopeful we can get this all
>> figured out.
>>>
>>> Thanks,
>>> John Halley Gotway
>>> met_help at ucar.edu [4]On
>> 03/28/2012 03:15 AM, M Bernal via RT wrote:
>>>
>>>> Wed Mar 28 03:15:39
>> 2012: Request 55513 was acted upon. Transaction: Ticket created by
>> everevee at yahoo.es [1] Queue: met_help Subject: MET installation
aborts
>> Owner: Nobody Requestors: everevee at yahoo.es [2] Status: new
>> Tickethttps://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513>
Dear
>> met_help team, I'm desperated with METv3.1 installation on a Linux
>> Debian Squeeze i686. I've installed NetCDF, BUFRLIB and GSL with
Intel
>> ifort and icc compilers, but i'm not able to do so for MET. I've
tried
>> different FLAGS in user_defs.mk, but installation always aborts and
>> don't produce executables. Please, find attached my user_defs.mk
and
>> make_met.log files. Let me know if you need any other information.
Thank
>> you, Manuel
>>
>>
>> Links:
>> ------
>> [1] mailto:everevee at yahoo.es
>> [2]
>> mailto:everevee at yahoo.es
>> [3]
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php
>> [4]
>> mailto:met_help at ucar.edu
>>
>
------------------------------------------------
Subject: MET installation aborts
From: bernalmm at us.es
Time: Thu Mar 29 15:59:15 2012
Thanks, John,
I'll retrieve this last update. Please, close the
ticket. Have a nice day,
Manuel
On Thu, 29 Mar 2012 10:19:18 -0600,
John Halley Gotway via RT wrote:
> Manuel,
>
> OK, the updated set of
patches is now posted on the MET website:
>
http://www.dtcenter.org/met/users/support/known_issues/METv3.1/index.php
[3]I'll go ahead and resolve this ticket.
>
> Thanks,
> John
>
> On
03/28/2012 08:37 PM, John Halley Gotway wrote:
>
>> Manuel, Great, glad
that did the trick. If you have not already done so, please retrieve
the
latest set of patches for METv3.1 from here:
http://www.dtcenter.org/met/users/support/known_issues/METv3.1/index.php
[2]Just follow the instructions on that page to apply the patches.
Actually, we'll be posting a new bugfix by 5pm MST tomorrow that
affects
the pcp_combine "-add" option. So you could wait until tomorrow
afternoon to retrieve the latest set of patches. Thanks, John
>>
>>>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513> Hi John,
Thanks
a lot. It works fine wih the intel default settings. Now I have my MET
compiled and all the executables were created. I've also successfully
run the test_all.sh script. Now I'll try MET tools for a real-data
verification case. Thanks for your help, Manuel On Wed, 28 Mar 2012
09:13:44 -0600, John Halley Gotway via RT wrote:
>>>
>>>> Manuel, I
took a look at the files you sent and see the
>>> problem. Looks like
there are several warnings, but that's not what's causing the error.
At
the end of the make_met.log file is this error:
>>>
>>>> ld:
/usr/include: No such file: File format not recognized
>>> Looking in
the user_def.mk file he sent, and searching for where"/usr/include" is
defined, I see it here: And that's where the problem is. These should
be
preceeded by a -I and -L, like this: C_INCS = -I/usr/include F2C_LIB
>>>
b This is discussed in the online tutor
>>>
>>>>
pilation/configure.php">h
>>>
enter.org/met/users/support/online_tutorial/METv3.1/compilation/configure.php[3]
cp user_defs_new.mk user_defs.mk make clean make>& make_met.log I'm
hopeful we can get this all figured out.
>>> car.edu">met_help at ucar.edu
[4]On 03/28/2012 03:15 AM, M Bernal via RT wrote: equestors:
>>>
evee at yahoo.es [2] Status: new
Tickethttps://rt.rap.ucar.edu/rt/Ticket/Display.html?id=55513>
>>>
>>>> etCDF, BUFRLIB and GSL with Intel ifort and icc compilers,
>>>
able to do so for MET. I've tried different FLAGS in user_defs.mk, but
installation always aborts and don't produce executables. Please, find
attache
>>>
>>>> nks: ------ [1] mailto:everevee at yahoo.es [1] [2]
mailt
>>> ilto:everevee at yahoo.es">everevee at yahoo.es [3] h
>>>
>>>>
href="mailto:met_help at ucar.edu">met_help at ucar.edu
Links:
------
[1]
mailto:everevee at yahoo.es
[2]
http://www.dtcenter.org/met/users/support/known_issues/METv3.1/index.php
[3]
http://www.dtcenter.org/met/users/support/known_issues/METv3.1/index.php
------------------------------------------------
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