[Met_help] [rt.rap.ucar.edu #41833] History for Met Build Problem (pb2nc build?)
RAL HelpDesk {for Paul Oldenburg}
met_help at ucar.edu
Thu Nov 11 14:19:25 MST 2010
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hello! I am a student at the University of Michigan working with my
professor (Frank Marsik) on a wrf project. We are hoping to use MET to
evaluate the results so I am attempting to install it on our computer, but I
have hit a few hiccups.
during the met build I come across the following error when the pb2nc
application attempts to build:
**** Making pb2nc application ***
>
> /usr/bin/g++ -o pb2nc pb2nc.cc pb2nc_Conf.o numpbmsg.o openpb.o readpb.o
> dumppb.o \
> -Wall -Wshadow -static -g -m32 -DMET_BASE=\"/home/wrf/METv3.0\" \
> -I../../lib -I/home/wrf/netcdf-3.6.0-p1/include -I/usr/local/include
> -I/home/wrf/bufrlib \
> -L../../lib -L/home/wrf/netcdf-3.6.0-p1/lib -L/usr/local/lib
> -L/home/wrf/bufrlib /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a \
> -lbufr -lvx_pb_util \
> -lvx_contable -lvx_met_util -lvx_analysis_util \
> -lvx_gdata -lvx_wrfdata -lvx_contable -lvx_met_util -lvx_grib_classes \
> -lvx_econfig -lvx_gsl_prob -lgsl \
> -lvx_plot_util -lvx_render -lvx_pxm -lvx_color -lvx_ps -lvx_afm \
> -lvx_data_grids -lvx_gnomon -lvx_nav -lvx_cal -lvx_util -lvx_math -lm \
> -lnetcdf_c++ -lnetcdf \
> -lg2c -lgfortran
> /home/wrf/netcdf-3.6.0-p1/include/netcdfcpp.h:175: warning: $-1��class
> NcTypedComponent��-A has virtual functions but non-virtual destructor
> /usr/bin/ld: skipping incompatible ../../lib/libvx_pb_util.a when searching
> for -lvx_pb_util
> /usr/bin/ld: cannot find -lvx_pb_util
> collect2: ld returned 1 exit status
> make[3]: *** [pb2nc] Error 1
> make[2]: *** [all] Error 2
> make[1]: *** [targets] Error 2
> make: *** [all] Error 2*
>
My make file for reference:
*# Path to GNU Make command*
> *MAKE = /usr/bin/make*
>
> *# Architecture flags*
> *ARCH_FLAGS = -DBLOCK4*
>
> *# Path to the C++ Compiler*
> *# C++ compiler flags*
> *# Any additional required libraries*
> *CXX = /usr/bin/g++*
> *CXX_FLAGS = -Wall -Wshadow -static -g -m32*
> *CXX_LIBS =*
>
> *# Path to the Fortran Compiler*
> *# Fortran compiler flags*
> *# Any additional required libraries*
> *FC = /usr/bin/g77*
> *FC_FLAGS = -Wall -Wshadow -static -ff2c -g -m32*
> *FC_LIBS = -lgfortran*
>
> *# Make print options*
> *PRINT_OPTS = --no-print-directory*
>
> *# Top level directory for the NetCDF library*
> *# NetCDF include directory specified as: -I/your/include/path*
> *# NetCDF library directory specified as: -L/your/library/path*
> *NETCDF_BASE = /home/wrf/netcdf-3.6.0-p1*
> *NETCDF_INCS = -I$(NETCDF_BASE)/include*
> *NETCDF_LIBS = -L$(NETCDF_BASE)/lib*
>
> *# Top level directory for BUFRLIB*
> *# BUFRLIB include directory specified as: -I/your/include/path*
> *# BUFRLIB library directory specified as: -L/your/library/path*
> *BUFR_BASE = /home/wrf/bufrlib*
> *BUFR_INCS = -I$(BUFR_BASE)*
> *BUFR_LIBS = -L$(BUFR_BASE)*
>
> *# Top level directory for the GNU Scientific Library (GSL) if it's not*
> *# installed in a standard location.*
> *# GSL include directory specified as: -I/your/include/path*
> *# GSL library directory specified as: -L/your/library/path*
> *GSL_BASE = /usr/local*
> *GSL_INCS = -I$(GSL_BASE)/include*
> *GSL_LIBS = -L$(GSL_BASE)/lib*
>
> *# Top level directory for the F2C or G2C Library if it's not installed in
> a*
> *# standard location.*
> *# F2C include directory specified as: -I/your/include/path*
> *# F2C library directory containing libf2c.a or libg2c.a and specified as:
> *
> *# -L/your/library/path*
> *# Name of the library to be used: -lf2c or -lg2c*
> *# NOTE: Only required for the GNU g77 Fortran compiler*
> *F2C_BASE =*
> *F2C_INCS =*
> *F2C_LIBS = /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a*
> *F2C_LIBNAME = -lg2c*
>
> *# Optional flags to disable the compilation of MET tools*
> *# Specify a non-zero value to disable the compilation of the tool*
> *DISABLE_PCP_COMBINE = 0*
> *DISABLE_GEN_POLY_MASK = 0*
> *DISABLE_MODE = 0*
> *DISABLE_GRID_STAT = 0*
> *DISABLE_PB2NC = 0*
> *DISABLE_ASCII2NC = 0*
> *DISABLE_POINT_STAT = 0*
> *DISABLE_WAVELET_STAT = 0*
> *DISABLE_ENSEMBLE_STAT = 0*
> *DISABLE_STAT_ANALYSIS = 0*
> *DISABLE_MODE_ANALYSIS = 0*
> *DISABLE_TOOLS = 1*
>
Thanks much,
--
Gavin D. Chensue
University of Michigan - College of Engineering
Dept. of Atmospheric Oceanic and Space Sciences
(734) 546-0725
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Complete Ticket History
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Subject: Re: [rt.rap.ucar.edu #41833] Met Build Problem (pb2nc build?)
From: Paul Oldenburg
Time: Fri Oct 29 12:04:07 2010
Gavin,
We noticed that you are using the g77 fortran compiler. We strongly
recommend that you use gfortran instead, since we
have a lot more experience supporting that compiler. If you do have
gfortran on your system, you will also need to make
the following change to the F2C_LIBS in your Makefile:
F2C_LIBS = "-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6"
This setting should point to the folder containing the included
library, not to the library itself. Also, it must be
prefixed with a -L for the linker to interpret it as a library folder.
If you do not have gfortran, and you must proceed using g77, you must
remove the following flags from the following
settings in your Makefile, since they will not work:
FC_FLAGS - remove -ff2c
FC_LIBS - remove -lgfortran
Also, if you are using g77, you may have to do some work to determine
the correct compiler flags and libraries. If you
have any questions, please let us know.
Thanks,
Paul
On 10/29/2010 10:57 AM, RAL HelpDesk {for Gavin Chensue} wrote:
>
> Fri Oct 29 10:57:23 2010: Request 41833 was acted upon.
> Transaction: Ticket created by gchensue at umich.edu
> Queue: met_help
> Subject: Met Build Problem (pb2nc build?)
> Owner: Nobody
> Requestors: gchensue at umich.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=41833 >
>
>
> Hello! I am a student at the University of Michigan working with my
> professor (Frank Marsik) on a wrf project. We are hoping to use MET
to
> evaluate the results so I am attempting to install it on our
computer, but I
> have hit a few hiccups.
>
> during the met build I come across the following error when the
pb2nc
> application attempts to build:
>
> **** Making pb2nc application ***
>>
>> /usr/bin/g++ -o pb2nc pb2nc.cc pb2nc_Conf.o numpbmsg.o openpb.o
readpb.o
>> dumppb.o \
>> -Wall -Wshadow -static -g -m32
-DMET_BASE=\"/home/wrf/METv3.0\" \
>> -I../../lib -I/home/wrf/netcdf-3.6.0-p1/include
-I/usr/local/include
>> -I/home/wrf/bufrlib \
>> -L../../lib -L/home/wrf/netcdf-3.6.0-p1/lib -L/usr/local/lib
>> -L/home/wrf/bufrlib /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a
\
>> -lbufr -lvx_pb_util \
>> -lvx_contable -lvx_met_util -lvx_analysis_util \
>> -lvx_gdata -lvx_wrfdata -lvx_contable -lvx_met_util
-lvx_grib_classes \
>> -lvx_econfig -lvx_gsl_prob -lgsl \
>> -lvx_plot_util -lvx_render -lvx_pxm -lvx_color -lvx_ps
-lvx_afm \
>> -lvx_data_grids -lvx_gnomon -lvx_nav -lvx_cal -lvx_util
-lvx_math -lm \
>> -lnetcdf_c++ -lnetcdf \
>> -lg2c -lgfortran
>> /home/wrf/netcdf-3.6.0-p1/include/netcdfcpp.h:175: warning: $-
1��class
>> NcTypedComponent��-A has virtual functions but non-virtual
destructor
>> /usr/bin/ld: skipping incompatible ../../lib/libvx_pb_util.a when
searching
>> for -lvx_pb_util
>> /usr/bin/ld: cannot find -lvx_pb_util
>> collect2: ld returned 1 exit status
>> make[3]: *** [pb2nc] Error 1
>> make[2]: *** [all] Error 2
>> make[1]: *** [targets] Error 2
>> make: *** [all] Error 2*
>>
>
> My make file for reference:
>
> *# Path to GNU Make command*
>> *MAKE = /usr/bin/make*
>>
>> *# Architecture flags*
>> *ARCH_FLAGS = -DBLOCK4*
>>
>> *# Path to the C++ Compiler*
>> *# C++ compiler flags*
>> *# Any additional required libraries*
>> *CXX = /usr/bin/g++*
>> *CXX_FLAGS = -Wall -Wshadow -static -g -m32*
>> *CXX_LIBS =*
>>
>> *# Path to the Fortran Compiler*
>> *# Fortran compiler flags*
>> *# Any additional required libraries*
>> *FC = /usr/bin/g77*
>> *FC_FLAGS = -Wall -Wshadow -static -ff2c -g -m32*
>> *FC_LIBS = -lgfortran*
>>
>> *# Make print options*
>> *PRINT_OPTS = --no-print-directory*
>>
>> *# Top level directory for the NetCDF library*
>> *# NetCDF include directory specified as: -I/your/include/path*
>> *# NetCDF library directory specified as: -L/your/library/path*
>> *NETCDF_BASE = /home/wrf/netcdf-3.6.0-p1*
>> *NETCDF_INCS = -I$(NETCDF_BASE)/include*
>> *NETCDF_LIBS = -L$(NETCDF_BASE)/lib*
>>
>> *# Top level directory for BUFRLIB*
>> *# BUFRLIB include directory specified as: -I/your/include/path*
>> *# BUFRLIB library directory specified as: -L/your/library/path*
>> *BUFR_BASE = /home/wrf/bufrlib*
>> *BUFR_INCS = -I$(BUFR_BASE)*
>> *BUFR_LIBS = -L$(BUFR_BASE)*
>>
>> *# Top level directory for the GNU Scientific Library (GSL) if it's
not*
>> *# installed in a standard location.*
>> *# GSL include directory specified as: -I/your/include/path*
>> *# GSL library directory specified as: -L/your/library/path*
>> *GSL_BASE = /usr/local*
>> *GSL_INCS = -I$(GSL_BASE)/include*
>> *GSL_LIBS = -L$(GSL_BASE)/lib*
>>
>> *# Top level directory for the F2C or G2C Library if it's not
installed in
>> a*
>> *# standard location.*
>> *# F2C include directory specified as: -I/your/include/path*
>> *# F2C library directory containing libf2c.a or libg2c.a and
specified as:
>> *
>> *# -L/your/library/path*
>> *# Name of the library to be used: -lf2c or -lg2c*
>> *# NOTE: Only required for the GNU g77 Fortran compiler*
>> *F2C_BASE =*
>> *F2C_INCS =*
>> *F2C_LIBS = /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a*
>> *F2C_LIBNAME = -lg2c*
>>
>> *# Optional flags to disable the compilation of MET tools*
>> *# Specify a non-zero value to disable the compilation of the tool*
>> *DISABLE_PCP_COMBINE = 0*
>> *DISABLE_GEN_POLY_MASK = 0*
>> *DISABLE_MODE = 0*
>> *DISABLE_GRID_STAT = 0*
>> *DISABLE_PB2NC = 0*
>> *DISABLE_ASCII2NC = 0*
>> *DISABLE_POINT_STAT = 0*
>> *DISABLE_WAVELET_STAT = 0*
>> *DISABLE_ENSEMBLE_STAT = 0*
>> *DISABLE_STAT_ANALYSIS = 0*
>> *DISABLE_MODE_ANALYSIS = 0*
>> *DISABLE_TOOLS = 1*
>>
>
> Thanks much,
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