[ncl-install] conda install issue
Kevin Hallock
hallock at ucar.edu
Fri Aug 23 10:46:48 MDT 2019
Hi Yang,
Could you please run the following commands and let us know if the problem is resolved:
conda activate ncl_stable # might be “source activate ncl_stable” if you’re using an old version of conda
conda update --all -c conda-forge
ncl -V
Several conda packages were updated recently, and I believe the problem should be fixable by updating all of the packages in your conda environment, but please let us know if not.
Thanks,
Kevin
> On Aug 18, 2019, at 9:37 AM, Yang Yang via ncl-install <ncl-install at ucar.edu> wrote:
>
> Hi Talk,
>
> I'm using conda to install ncl. I got the following error when I open ncl.
>
> ncl -V
> ncl: error while loading shared libraries: libtiledb.so.1.6.0: cannot open shared object file: No such file or directory
>
>
> Anyone know how to solve this issue? Thanks!
>
> I also attach the following info.
>
> conda list -n ncl_stable
> # packages in environment at /home/cyclone/.conda/envs/ncl_stable:
> #
> # Name Version Build Channel
> _libgcc_mutex 0.1 main
> boost-cpp 1.70.0 h8e57a91_2 conda-forge
> bzip2 1.0.8 h516909a_0 conda-forge
> ca-certificates 2019.6.16 hecc5488_0 conda-forge
> cairo 1.16.0 hfb77d84_1002 conda-forge
> cfitsio 3.470 hb60a0a2_2 conda-forge
> curl 7.65.3 hf8cf82a_0 conda-forge
> esmf 7.1.0 h9a7cb89_1006 conda-forge
> expat 2.2.5 he1b5a44_1003 conda-forge
> fontconfig 2.13.1 h86ecdb6_1001 conda-forge
> freetype 2.10.0 he983fc9_1 conda-forge
> freexl 1.0.5 h14c3975_1002 conda-forge
> geos 3.7.2 he1b5a44_1 conda-forge
> geotiff 1.5.1 h560c3f3_2 conda-forge
> gettext 0.19.8.1 hc5be6a0_1002 conda-forge
> giflib 5.1.7 h516909a_1 conda-forge
> glib 2.58.3 h6f030ca_1002 conda-forge
> gsl 2.5 h294904e_0 conda-forge
> hdf4 4.2.13 h9a582f1_1002 conda-forge
> hdf5 1.10.5 nompi_h3c11f04_1100 conda-forge
> hdfeos2 2.20 h64bfcee_1000 conda-forge
> hdfeos5 5.1.16 h8b6279f_5 conda-forge
> icu 64.2 he1b5a44_0 conda-forge
> jasper 1.900.1 h07fcdf6_1006 conda-forge
> jpeg 9c h14c3975_1001 conda-forge
> json-c 0.13.1 h14c3975_1001 conda-forge
> kealib 1.4.10 h58c409b_1005 conda-forge
> krb5 1.16.3 h05b26f9_1001 conda-forge
> libblas 3.8.0 12_openblas conda-forge
> libcblas 3.8.0 12_openblas conda-forge
> libcurl 7.65.3 hda55be3_0 conda-forge
> libdap4 3.20.2 hd48c02d_1000 conda-forge
> libedit 3.1.20170329 hf8c457e_1001 conda-forge
> libffi 3.2.1 he1b5a44_1006 conda-forge
> libgcc-ng 9.1.0 hdf63c60_0
> libgdal 3.0.1 hbef8c27_6 conda-forge
> libgfortran-ng 7.3.0 hdf63c60_0
> libiconv 1.15 h516909a_1005 conda-forge
> libkml 1.3.0 h4fcabce_1010 conda-forge
> libnetcdf 4.6.2 h056eaf5_1002 conda-forge
> libopenblas 0.3.7 h6e990d7_1 conda-forge
> libpng 1.6.37 hed695b0_0 conda-forge
> libpq 11.5 hd9ab2ff_0 conda-forge
> libspatialite 4.3.0a he1bb1e1_1029 conda-forge
> libssh2 1.8.2 h22169c7_2 conda-forge
> libstdcxx-ng 9.1.0 hdf63c60_0
> libtiff 4.0.10 h57b8799_1003 conda-forge
> libuuid 2.32.1 h14c3975_1000 conda-forge
> libxcb 1.13 h14c3975_1002 conda-forge
> libxml2 2.9.9 hee79883_2 conda-forge
> lz4-c 1.8.3 he1b5a44_1001 conda-forge
> mpi 1.0 mpich conda-forge
> mpich 3.2.1 hc99cbb1_1014 conda-forge
> ncl 6.6.2 ha6cf544_7 conda-forge
> ncurses 6.1 hf484d3e_1002 conda-forge
> netcdf-fortran 4.4.5 hfc18c51_1001 conda-forge
> openjpeg 2.3.1 h58a6597_0 conda-forge
> openssl 1.1.1c h516909a_0 conda-forge
> pcre 8.41 hf484d3e_1003 conda-forge
> pixman 0.38.0 h516909a_1003 conda-forge
> poppler 0.67.0 ha967d66_7 conda-forge
> poppler-data 0.4.9 1 conda-forge
> postgresql 11.5 hc63931a_0 conda-forge
> proj4 6.1.0 he751ad9_2 conda-forge
> pthread-stubs 0.4 h14c3975_1001 conda-forge
> readline 8.0 hf8c457e_0 conda-forge
> sqlite 3.29.0 hcee41ef_0 conda-forge
> tbb 2018.0.5 h2d50403_0 conda-forge
> tiledb 1.6.2 h69c774e_0 conda-forge
> tk 8.6.9 hed695b0_1002 conda-forge
> tzcode 2019a h516909a_1002 conda-forge
> udunits2 2.2.27.6 h4e0c4b3_1001 conda-forge
> xerces-c 3.2.2 h8412b87_1004 conda-forge
> xorg-imake 1.0.7 0 conda-forge
> xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
> xorg-libice 1.0.10 h516909a_0 conda-forge
> xorg-libsm 1.2.3 h84519dc_1000 conda-forge
> xorg-libx11 1.6.8 h516909a_0 conda-forge
> xorg-libxau 1.0.9 h14c3975_0 conda-forge
> xorg-libxaw 1.0.13 h14c3975_1002 conda-forge
> xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
> xorg-libxext 1.3.4 h516909a_0 conda-forge
> xorg-libxmu 1.1.3 h516909a_0 conda-forge
> xorg-libxpm 3.5.12 h14c3975_1002 conda-forge
> xorg-libxrender 0.9.10 h516909a_1002 conda-forge
> xorg-libxt 1.1.5 h516909a_1003 conda-forge
> xorg-makedepend 1.0.6 he1b5a44_1 conda-forge
> xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
> xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
> xorg-xproto 7.0.31 h14c3975_1007 conda-forge
> xz 5.2.4 h14c3975_1001 conda-forge
> zlib 1.2.11 h516909a_1005 conda-forge
> zstd 1.4.0 h3b9ef0a_0 conda-forge
> (ncl_stable) [cyclone at mnode ~]$ conda --version
> conda 4.7.11
> (ncl_stable) [cyclone at mnode ~]$ which ncl
> ~/.conda/envs/ncl_stable/bin/ncl
> (ncl_stable) [cyclone at mnode ~]$ ncl -V
> ncl: error while loading shared libraries: libtiledb.so.1.6.0: cannot open shared object file: No such file or directory
> (ncl_stable) [cyclone at mnode ~]$ env | grep NCARG
> NCARG_ROOT=/home/cyclone/.conda/envs/ncl_stable
> (ncl_stable) [cyclone at mnode ~]$
>
>
>
> Yang Yang
> Lecturer
> Nanjing University of Information Science and Technology – School of Marine Sciences
> 219 Ningliu Road, Nanjing 210044, China
> Email: yangyang.nuist at gmail.com <mailto:yangyang2 at mail.usf.edu> | Cell: +86-15651999690
> Website <http://ocean.nuist.edu.cn/yangyang> | Researchgate <https://www.researchgate.net/profile/Yang_Yang48> | Google Scholar <https://scholar.google.com/citations?user=OHJD1IoAAAAJ> | ORCID <http://orcid.org/0000-0002-8264-4816>_______________________________________________
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