[ncl-install] Error in running ncargf90

Mary Haley haley at ucar.edu
Mon Jan 29 08:22:31 MST 2018 

Dear Yuanfu,

Sorry it took me awhile to put a beta version together.

To install the beta version of NCL, you need to download a compressed tar
file, and then extract it in a directory of your choice. We recommend that
you NOT install it over your current version of NCL, as this is a beta
version and shouldn't be used for production purposes.


First, open a UNIX terminal window so you can type the commands below.


To get the compressed tar file, you can use wget or ftp. Type one of the
following sets of commands:


    wget ftp.ucar.edu:/pub/scd/haley/
ncl_ncarg-6.5.0-29Jan2018_0752.MacOS_10.12_64bit_gnu630.tar.gz


OR:


    ftp ftp.ucar.edu

    <log in as "anonymous">

    <Use email address as password>

    cd pub/scd/haley

    get ncl_ncarg-6.5.0-29Jan2018_0752.MacOS_10.12_64bit_gnu630.tar.gz

    quit



Please note you can't list the contents of this directory, and you have to
type the exact name of the file as you see it above.


Once you have the file, you need to extract it wherever you want the
software to reside. For example, if you want the software in
/usr/local/ncl-6.5.0-beta, type the following:


   mkdir /usr/local/ncl-6.5.0-beta

   tar -zxf ncl_ncarg-6.5.0-29Jan2018_0752.MacOS_10.12_64bit_gnu630.gz -C /u
sr/local/ncl-6.5.0-beta


You can then remove the file
ncl_ncarg-6.5.0-29Jan2018_0752.MacOS_10.12_64bit_gnu630.tar or save it
somewhere.


You also need to setenv NCARG_ROOT to /usr/local/ncl-6.5.0-beta, and make
sure /usr/local/ncl-6.5.0-beta/bin is on your search path.


   export NCARG_ROOT=/usr/local/ncl-6.5.0-beta

   export PATH=$NCARG_ROOT/bin:$PATH


You can quickly test if this all works by typing:


   which ncl

   ncl -V

   ng4ex xy01n -W x11 -clean


The first command should echo the full path to the new "ncl" executable:


  /usr/local/ncl-6.5.0-beta/bin/ncl


The second command should echo a version, like:


   6.5.0-29Jan2018_0752


The third command should pop up an X11 window with an XY plot. Click on
this window with your left mouse button and it will go away.


If any of these commands don't work, please copy and paste all the stuff
you typed and the errors, and send it back to ncl-install at ucar.edu.

Thanks,

--Mary

On Wed, Jan 24, 2018 at 12:01 AM, Yuanfu Xie <yuanfu_xie at yahoo.com> wrote:

> Mary,
>
> I will certainly consider to install an older version. If you can send me
> your beta version, I will be more than happy to try it out. Thanks.
>
> Best regards,
>
> Yuanfu
>
>
> On Wednesday, January 24, 2018 12:34 PM, Mary Haley <haley at ucar.edu>
> wrote:
>
>
> You are running GNU version 7.1 which is incompatible with what the
> version of NCL you have was built with.
>
> We have been telling people not to install GNU 7.1 if possible, and revert
> back to GNU 6.x.
>
> In our MacOS download notes:
>
> http://www.ncl.ucar.edu/Download/macosx.shtml#InstallCompilers
>
> We provide the location of where you can install older compilers. It might
> be worth a shot:
>
> https://sourceforge.net/projects/hpc/files/hpc/gcc/
>
> For the record, I have GNU 7.1.0 installed on my home Mac, and I'm able to
> compile NCL with it, but this is a test version that is not ready for
> public release yet.  If you want to give it a try, I can give you a beta
> version.
>
> --Mary
>
>
> On Mon, Jan 22, 2018 at 5:55 PM, Yuanfu Xie <yuanfu_xie at yahoo.com> wrote:
>
> Hi, Mary,
>
> Following your instructions, I ran them with the following outputs. It
> seems some internal error. Let me know what I can try next.
>
> Thank you so much for your help.
>
> Yuanfu
>
> *xieyuanfudeiMac:~ xieyuanfu$ sw_vers -productVersion*
> *10.13.1*
> *xieyuanfudeiMac:~ xieyuanfu$ which gfortran*
> */usr/local/bin/gfortran*
> *xieyuanfudeiMac:~ xieyuanfu$ gfortran --version*
> *GNU Fortran (GCC) 7.1.0*
> *Copyright (C) 2017 Free Software Foundation, Inc.*
> *This is free software; see the source for copying conditions.  There is
> NO*
> *warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.*
>
> *xieyuanfudeiMac:~ xieyuanfu$ which gcc*
> */usr/local/bin/gcc*
> *xieyuanfudeiMac:~ xieyuanfu$ gcc --version*
> *gcc (GCC) 7.1.0*
> *Copyright (C) 2017 Free Software Foundation, Inc.*
> *This is free software; see the source for copying conditions.  There is
> NO*
> *warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.*
>
> *xieyuanfudeiMac:~ xieyuanfu$ ncargex agex07 -W x11 -n*
>
> *NCAR Graphics Fortran  Example <agex07>*
>
>
> *NOTE: This example is being run interactively and can only*
> *      be executed if you have X running and have your     *
> *      DISPLAY environment variable set properly.  It will *
> *      create an X11 window that you must click on with your*
> *      mouse to advance the frame(s).*
>
> *  Copying agex07.f*
>
> *xieyuanfudeiMac:~ xieyuanfu$ ncargf90 agex07.f -o agex07*
> *gfortran -fPIC -fno-range-check -m64 -Wall -fopenmp -O agex07.f -o agex07
> -L/usr/local/ncl_ncarg-6.4.0/ lib -L/opt/X11/lib -lncarg -lncarg_gks
> -lncarg_c -lXpm -lX11 -lXext -lcairo -lfontconfig -lpixman-1 -lfreetype
> -lexpat -lpng -lz -lXrender -lbz2*
> *agex07.f:166:29:*
>
> *       SUBROUTINE AGUTOL (IAXS,FUNS,IDMA,VINP,VOTP)*
>                              *1*
> *Warning:** Unused dummy argument ‘**iaxs**’ at (1) [*
> *-Wunused-dummy-argument**]*
> *xieyuanfudeiMac:~ xieyuanfu$ ./agex07*
> *At line 48 of file grqst.f*
> *Internal Error: get_unit(): Bad internal unit KIND*
>
> *Error termination. Backtrace:*
> *#0  0x10ce3434c*
> *#1  0x10ce35055*
> *#2  0x10ce3550d*
> *#3  0x10cf78e6d*
> *#4  0x10cf7677f*
> *#5  0x10c91a523*
> *#6  0x10c9139ee*
> *#7  0x10c911901*
> *#8  0x10c903afd*
> *#9  0x10c9765ef*
> *xieyuanfudeiMac:~ xieyuanfu$ *
>
>
>
> On Tuesday, January 23, 2018 4:35 AM, Mary Haley <haley at ucar.edu> wrote:
>
>
> Can you type the following commands and send email all the output back to
> ncl-install at ucar.edu:
>
> sw_vers -productVersion
> which gfortran
> gfortran --version
> which gcc
> gcc --version
> ncargex agex07 -W x11 -n
> ncargf90 agex07.f -o agex07
> ./agex07
>
> Thanks,
>
> --Mary
>
> On Tue, Jan 16, 2018 at 10:46 PM, Yuanfu Xie <yuanfu_xie at yahoo.com> wrote:
>
> Mary and Ted,
>
> Thank you both for your help. After installing Xcode, it worked but it ran
> into segmentation fault problem (see my separate email).
>
> Yuanfu
>
>
> On Wednesday, January 17, 2018 1:21 AM, Mary Haley <haley at ucar.edu> wrote:
>
>
> Yuanfu,
>
> Idon't think this is an ncargf90 problem, but rather a gfortran problem.
> And I believe the issue is with your xcode being out-of-date with your
> gfortran.  This can happen if you've upgraded your system lately.
>
> If you google the "missing xcrun at: /Library/Developer/
> CommandLineTools/usr/bin/ xcrun" error message, you will see some
> suggestions that you need to fix the developer tools on your Mac by typing
> (from a UNIX terminal window):
>
> xcode-select --install
>
> https://stackoverflow.com/ questions/32893412/command-
> line-tools-not-working-os-x- el-capitan-macos-sierra-macos- high-sierra
> <https://stackoverflow.com/questions/32893412/command-line-tools-not-working-os-x-el-capitan-macos-sierra-macos-high-sierra>
>
> --Mary
>
>
>
>
> On Mon, Jan 15, 2018 at 5:49 PM, Yuanfu Xie via ncl-install <
> ncl-install at ucar.edu> wrote:
>
>
> Greetings.
>
> I am trying to compile a Fortran code using the command of ncargf90. It
> returned an error message (see the attached messages). I do not see any
> file named xcrun on my computer. Would you give me some help on how to
> resolve this issue? Thank you.
>
> Best regards,
>
> Yuanfu
>
> ncargf90 heun.f90
> gfortran -fPIC -fno-range-check -m64 -Wall -fopenmp -O heun.f90
> -L/Users/xieyuanfu/plotting/ ncl_ncarg-6.4.0-MacOS_10.12_ 64bit_gnu530/lib
> -L/opt/X11/lib -lncarg -lncarg_gks -lncarg_c -lXpm -lX11 -lXext -lcairo
> -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lXrender -lbz2
> xcrun: error: invalid active developer path (/Library/Developer/
> CommandLineTools), missing xcrun at: /Library/Developer/
> CommandLineTools/usr/bin/xcrun
>
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