[ncl-install] [ncl-talk] Problem to run NCL 5.2.1 from Mary Haley
Mary Haley
haley at ucar.edu
Thu Jul 8 16:26:17 MDT 2010
I've taken this offline, but it's important to note that "ncl" is actually running in this case. It's just producing a warning.
There may be something wrong with the way libssl is linked on your system.
I googled this error, but didn't
come up with anything useful. Some folks suggested "correctly linking this library", which leads me to believe
this is a system problem, and not an NCL problem.
--Mary
On Jul 8, 2010, at 3:07 PM, Li, Yongzuo wrote:
>
> Hi Mary,
>
> When I run ncl.beta I got
>
> Bazooka[9] yli$ ncl.beta
> ncl.beta: /usr/lib64/libssl.so.0.9.8: no version information available (required by ncl.beta)
> ncl.beta: /usr/lib64/libcrypto.so.0.9.8: no version information available (required by ncl.beta)
> Copyright (C) 1995-2010 - All Rights Reserved
> University Corporation for Atmospheric Research
> NCAR Command Language Version 5.2.1
> The use of this software is governed by a License Agreement.
> See http://www.ncl.ucar.edu/ for more details.
> ncl 0>
>
>
> Bazooka[11] yli$ ls -l /usr/lib/libssl*
> -rwxr-xr-x 1 root root 168004 2008-01-31 13:21 /usr/lib/libssl3.so*
> -rwxr-xr-x 1 root root 196816 2008-02-28 12:30 /usr/lib/libssl.so.0.9.7*
> -r-xr-xr-x 1 root root 248116 2008-04-21 18:42 /usr/lib/libssl.so.0.9.8
>
> Bazooka[12] yli$ ls -l /usr/lib64/libssl*
> -rwxr-xr-x 1 root root 193248 2008-01-31 23:39 /usr/lib64/libssl3.so*
> -rw-r--r-- 1 root root 534260 2008-04-21 20:22 /usr/lib64/libssl.a
> lrwxrwxrwx 1 root root 15 2010-06-01 10:16 /usr/lib64/libssl.so -> libssl.so.0.9.8*
> -rwxr-xr-x 1 root root 221752 2008-02-28 12:29 /usr/lib64/libssl.so.0.9.7*
> -r-xr-xr-x 1 root root 290120 2008-04-21 20:22 /usr/lib64/libssl.so.0.9.8*
> Bazooka[13] yli$
> echo $LD_LIBRARY_PATH
> ....................:/usr/lib:.....................
> Yongzuo
> ________________________________________
>> From: Mary Haley [haley at ucar.edu]
>> Sent: Thursday, July 08, 2010 12:12 PM
>> To: Li, Yongzuo
>> Subject: Re: Problem to run NCL 5.2.1 from Mary Haley
>>
>> Yongzuo,
>>
>> Do you have libssl.so.0.9.8?
>>
>> If so, I've built another "ncl.beta" that references this file instead of libssl.so.6.
>>
>> The instructions are the same as before to get the new "ncl.beta" file.
>>
>> Here's what the dependencies look like in this executable:
>>
>> libssl.so.0.9.8 => /usr/lib/libssl.so.0.9.8 (0x00002b73cdb31000)
>> librt.so.1 => /lib/librt.so.1 (0x00002b73cdc78000)
>> libX11.so.6 => /usr/lib/libX11.so.6 (0x00002b73cdd82000)
>> libXext.so.6 => /usr/lib/libXext.so.6 (0x00002b73cdf8b000)
>> libm.so.6 => /lib/libm.so.6 (0x00002b73ce09c000)
>> libdl.so.2 => /lib/libdl.so.2 (0x00002b73ce21f000)
>> libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00002b73ce322000)
>> libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00002b73ce520000)
>> libc.so.6 => /lib/libc.so.6 (0x00002b73ce62e000)
>> libcrypto.so.0.9.8 => /usr/lib/libcrypto.so.0.9.8 (0x00002b73ce86b000)
>> libpthread.so.0 => /lib/libpthread.so.0 (0x00002b73ceadf000)
>> libz.so.1 => /usr/lib/libz.so.1 (0x00002b73cebf5000)
>> /lib64/ld-linux-x86-64.so.2 (0x00002b73cda19000)
>> libXau.so.6 => /usr/lib/libXau.so.6 (0x00002b73ced0b000)
>> libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0x00002b73cee0d000)
>>
>>
>> --Mary
>>
>> On Jul 7, 2010, at 8:08 PM, Li, Yongzuo wrote:
>>
>>> Hi Mary,
>>>
>>> I asked computer admin to make libssl.so.6 for and have not received
>>> reply. Usually they consider it as upgrade of whole system and
>>> may or may not do it for me.
>>>
>>> I would like to have a libssl.so.6 from you.
>>>
>>> Thanks.
>>>
>>> Yongzuo
>>>
>>>>> Bazooka[33] yli$ gcc --version
>>>>> gcc (GCC) 4.1.2 20070115 (SUSE Linux)
>>>>> Copyright (C) 2006 Free Software Foundation, Inc.
>>>>> This is free software; see the source for copying conditions.
>>>>> There is NO
>>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>>>>> PURPOSE.
>>>>>
>>>>> Bazooka[34] yli$ uname -a
>>>>> Linux Bazooka.HPC.MsState.Edu 2.6.16.60-0.42.8-smp #1 SMP Tue Dec
>>>>> 15 17:28:00 UTC 2009 x86_64 x86_64 x86_64 GNU/Linux
>>>>> Bazooka[35] yli$
>>>>>
>>> ________________________________________
>>> From: Mary Haley [haley at ucar.edu]
>>> Sent: Tuesday, July 06, 2010 8:18 AM
>>> To: Li, Yongzuo
>>> Cc: ncl-talk at ucar.edu
>>> Subject: Re: [ncl-talk] Problem to run NCL 5.2.1 from Mary Haley
>>>
>>> Do you have "locate" on your system? If so, type:
>>>
>>> locate libssl.so.6
>>>
>>> If it finds this library, then set the LD_LIBRARY_PATH environment
>>> variable to the location of this library.
>>> For example:
>>>
>>> setenv LD_LIBRARY_PATH /xxx/yyy
>>>
>>> or
>>>
>>> export LD_LIBRARY_PATH=/xxx/yyy
>>>
>>> Where "/xxx/yyy" is the path to this library.
>>>
>>> If you don't have libssl.so.6, then you can ask your system
>>> administrator about this, or
>>> I will have to build you a non-OPeNDAP binary, and I can't get to this
>>> until tomorrow.
>>>
>>> --Mary
>>>
>>> On Jul 2, 2010, at 9:55 PM, Li, Yongzuo wrote:
>>>
>>>> Hi,
>>>>
>>>> I got error to run v5.2.1 from Mary.
>>>>
>>>> Bazooka[18] yli$ ncl.beta
>>>> ncl.beta: error while loading shared libraries: libssl.so.6: cannot
>>>> open shared object file: No such file or directory
>>>> Bazooka[19] yli$
>>>> Bazooka[19] yli$ ncl
>>>> Copyright (C) 1995-2010 - All Rights Reserved
>>>> University Corporation for Atmospheric Research
>>>> NCAR Command Language Version 5.2.0
>>>> The use of this software is governed by a License Agreement.
>>>> See http://www.ncl.ucar.edu/ for more details.
>>>> ncl 0> quit
>>>>
>>>> Yongzuo
>>>>
>>>> Yongzuo,
>>>>
>>>> I have a new "ncl.beta" executable for you to try. If you already
>>>> have NCL 5.2.0, then here are the instructions
>>>> for trying the new executable:
>>>>
>>>> ftp ftp.ucar.edu
>>>> <log in as "anonymous">
>>>> <Use email address as password>
>>>> cd /pub/scd/haley
>>>> get ncl.beta
>>>> quit
>>>>
>>>> Once you have the file, make sure it is executable, and move it to
>>>> $NCARG_ROOT/bin:
>>>>
>>>> chmod gou+x ncl.beta
>>>> mv ncl.beta $NCARG_ROOT/bin/.
>>>>
>>>> Now you can use this new NCL executable instead of the one already
>>>> installed on your system:
>>>>
>>>> ncl.beta your_script.ncl
>>>>
>>>> If you are comfortable that this executable works, you can replace
>>>> your old ncl executable with this new one. You should first make a
>>>> copy of your old one:
>>>>
>>>> cd $NCARG_ROOT/bin
>>>> mv ncl ncl.old
>>>> mv ncl.beta ncl
>>>>
>>>> This should should do it. Please let me know if you have any
>>>> problems.
>>>>
>>>> --Mary
>>>>
>>>> On Jul 2, 2010, at 11:28 AM, Dennis Shea wrote:
>>>>
>>>>> Mary Haley will contact about a beta binary.
>>>>>
>>>>> Also, please try Mary's suggestion about raster smoothing.
>>>>>
>>>>> Good luck
>>>>>
>>>>> -------- Original Message --------
>>>>> Subject: [ncl-talk] v5.2.1 for rcm2points to solve interpolation
>>>>> noise
>>>>> Date: Fri, 2 Jul 2010 17:17:29 +0000
>>>>> From: Li, Yongzuo<yongzuo.li at ou.edu>
>>>>> To: ncl-talk at ucar.edu<ncl-talk at ucar.edu>
>>>>> CC: karan at ngi.msstate.edu<karan at ngi.msstate.edu>
>>>>>
>>>>> Hi ,
>>>>>
>>>>> According to Dennis's e-mail below, I provide
>>>>>
>>>>> Bazooka[33] yli$ gcc --version
>>>>> gcc (GCC) 4.1.2 20070115 (SUSE Linux)
>>>>> Copyright (C) 2006 Free Software Foundation, Inc.
>>>>> This is free software; see the source for copying conditions.
>>>>> There is NO
>>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>>>>> PURPOSE.
>>>>>
>>>>> Bazooka[34] yli$ uname -a
>>>>> Linux Bazooka.HPC.MsState.Edu 2.6.16.60-0.42.8-smp #1 SMP Tue Dec
>>>>> 15 17:28:00 UTC 2009 x86_64 x86_64 x86_64 GNU/Linux
>>>>> Bazooka[35] yli$
>>>>>
>>>>> What is next step?
>>>>>
>>>>> Yongzuo
>>>>>
>>>>> ________________________________________
>>>>> From: Dennis Shea [shea at ucar.edu]
>>>>> Sent: Friday, July 02, 2010 11:09 AM
>>>>> To: Li, Yongzuo
>>>>> Cc: ncl-talk at ucar.edu; karan at ngi.msstate.edu
>>>>> Subject: Re: [ncl-talk] noise after 2D interpolation
>>>>>
>>>>> The v5.2.1 release has another option [opt=2]
>>>>>
>>>>> http://www.ncl.ucar.edu/Document/Functions/Built-in/rcm2points.shtml
>>>>>
>>>>> You can provide the following information
>>>>>
>>>>> %> gcc --version
>>>>>
>>>>> %> uname -a
>>>>>
>>>>> a v5.2.1 beta version can be made available.
>>>>>
>>>>>
>>>>> On 7/2/10 12:44 AM, Li, Yongzuo wrote:
>>>>>> Hi,
>>>>>>
>>>>>>
>>>>>> I use
>>>>>>
>>>>>> ftp://ftp.erc.msstate.edu/outgoing/yli/ABL/wrf-minus-ruc.ncl
>>>>>>
>>>>>> to make
>>>>>>
>>>>>> ftp://ftp.erc.msstate.edu/outgoing/yli/ABL/wrf-minus-ruc-final.pdf
>>>>>>
>>>>>> There are a lot of noise on page 3 of the pdf file after
>>>>>>
>>>>>> u1d = rcm2points(lat2d,lon2d,uzoom,y1d,x1d,2)
>>>>>> v1d = rcm2points(lat2d,lon2d,vzoom,y1d,x1d,2)
>>>>>>
>>>>>> Is any smooth function available in NCL to remove noise?
>>>>>>
>>>>>>
>>>>>> Yongzuo
>>>>>> _______________________________________________
>>>>>> ncl-talk mailing list
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>>>>>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>>>>> _______________________________________________
>>>>> ncl-talk mailing list
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>>>>
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>>
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