[Dart-dev] [3715] DART/trunk/models:
Rename merge_obs_seq to the more general obs_sequence_tool;
nancy at ucar.edu
nancy at ucar.edu
Mon Dec 15 11:20:31 MST 2008
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Modified: DART/trunk/models/PBL_1d/work/input.nml
===================================================================
--- DART/trunk/models/PBL_1d/work/input.nml 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/PBL_1d/work/input.nml 2008-12-15 18:20:30 UTC (rev 3715)
@@ -142,26 +142,65 @@
input_files = '../../../obs_def/obs_def_reanalysis_bufr_mod.f90',
'../../../obs_def/obs_def_metar_mod.f90' /
-&restart_file_utility_nml
+&obs_sequence_tool_nml
+ num_input_files = 2,
+ filename_seq = 'obs_seq.one', 'obs_seq.two',
+ filename_out = 'obs_seq.processed',
+ first_obs_days = -1,
+ first_obs_seconds = -1,
+ last_obs_days = -1,
+ last_obs_seconds = -1,
+ print_only = .false.,
+ min_lat = -90.0,
+ max_lat = 90.0,
+ min_lon = 0.0,
+ max_lon = 360.0,
+ gregorian_cal = .false.
+ /
+
+# other possible obs tool namelist items:
+#
+# keep only the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .true.,
+#
+# remove the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .false.,
+#
+# keep only observations with a DART QC of 0:
+# qc_metadata = 'Dart quality control',
+# min_qc = 0,
+# max_qc = 0,
+#
+# keep only radiosonde temp obs between 250 and 300 K:
+# copy_metadata = 'NCEP BUFR observation',
+# copy_type = 'RADIOSONDE_TEMPERATURE',
+# min_copy = 250.0,
+# max_copy = 300.0,
+#
+
+
+&restart_file_tool_nml
input_file_name = "filter_restart",
output_file_name = "filter_updated_restart",
- ens_size = 1,
+ ens_size = 1,
single_restart_file_in = .true.,
single_restart_file_out = .true.,
write_binary_restart_files = .true.,
overwrite_data_time = .false.,
- new_data_days = -1,
- new_data_secs = -1,
+ new_data_days = -1,
+ new_data_secs = -1,
input_is_model_advance_file = .false.,
output_is_model_advance_file = .false.,
overwrite_advance_time = .false.,
- new_advance_days = -1,
- new_advance_secs = -1 /
+ new_advance_days = -1,
+ new_advance_secs = -1,
+ gregorian_cal = .true.
+/
-&merge_obs_seq_nml
- num_input_files = 2,
- filename_seq = 'obs_seq.one', 'obs_seq.two',
- filename_out = 'obs_seq.merged' /
# The times in the namelist for the obs_diag program are vectors
# that follow the following sequence:
Deleted: DART/trunk/models/PBL_1d/work/mkmf_merge_obs_seq
===================================================================
--- DART/trunk/models/PBL_1d/work/mkmf_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/PBL_1d/work/mkmf_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,15 +0,0 @@
-#!/bin/csh
-#
-# Data Assimilation Research Testbed -- DART
-# Copyright 2004-2007, Data Assimilation Research Section
-# University Corporation for Atmospheric Research
-# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
-#
-# <next few lines under version control, do not edit>
-# $URL$
-# $Id$
-# $Revision$
-# $Date$
-#
-../../../mkmf/mkmf -p merge_obs_seq -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
- -a "../../.." path_names_merge_obs_seq
Copied: DART/trunk/models/PBL_1d/work/mkmf_obs_sequence_tool (from rev 3708, DART/trunk/models/PBL_1d/work/mkmf_merge_obs_seq)
===================================================================
--- DART/trunk/models/PBL_1d/work/mkmf_obs_sequence_tool (rev 0)
+++ DART/trunk/models/PBL_1d/work/mkmf_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL$
+# $Id$
+# $Revision$
+# $Date$
+#
+../../../mkmf/mkmf -p obs_sequence_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_obs_sequence_tool
Added: DART/trunk/models/PBL_1d/work/mkmf_restart_file_tool
===================================================================
--- DART/trunk/models/PBL_1d/work/mkmf_restart_file_tool (rev 0)
+++ DART/trunk/models/PBL_1d/work/mkmf_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL: https://subversion.ucar.edu/DAReS/DART/trunk/models/PBL_1d/work/mkmf_restart_file_tool $
+# $Id: mkmf_restart_file_tool 3440 2008-07-01 23:07:15Z thoar $
+# $Revision: 3440 $
+# $Date: 2008-07-01 17:07:15 -0600 (Tue, 01 Jul 2008) $
+#
+../../../mkmf/mkmf -p restart_file_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_restart_file_tool
Property changes on: DART/trunk/models/PBL_1d/work/mkmf_restart_file_tool
___________________________________________________________________
Name: svn:executable
+ *
Deleted: DART/trunk/models/PBL_1d/work/path_names_merge_obs_seq
===================================================================
--- DART/trunk/models/PBL_1d/work/path_names_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/PBL_1d/work/path_names_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,77 +0,0 @@
-obs_sequence/merge_obs_seq.f90
-obs_sequence/obs_sequence_mod.f90
-obs_model/obs_model_mod.f90
-obs_kind/obs_kind_mod.f90
-obs_def/obs_def_mod.f90
-cov_cutoff/cov_cutoff_mod.f90
-assim_model/assim_model_mod.f90
-models/PBL_1d/model_mod.f90
-common/types_mod.f90
-sort/sort_mod.f90
-ensemble_manager/ensemble_manager_mod.f90
-location/threed_sphere/location_mod.f90
-random_seq/random_seq_mod.f90
-random_nr/random_nr_mod.f90
-time_manager/time_manager_mod.f90
-utilities/utilities_mod.f90
-mpi_utilities/null_mpi_utilities_mod.f90
-models/PBL_1d/src/module_bl_mrf.F90
-models/PBL_1d/src/module_bl_myjpbl.F90
-models/PBL_1d/src/module_bl_ysu.F90
-models/PBL_1d/src/module_bl_gfs.F90
-models/PBL_1d/src/module_getsm.F90
-models/PBL_1d/src/module_gfs_funcphys.F90
-models/PBL_1d/src/module_ideal.F90
-models/PBL_1d/src/module_initialize.F90
-models/PBL_1d/src/module_init_soil_ideal.F90
-models/PBL_1d/src/module_init_soil_real.F90
-models/PBL_1d/src/module_interpolations.F90
-models/PBL_1d/src/module_gfs_machine.F90
-models/PBL_1d/src/module_gfs_physcons.F90
-models/PBL_1d/src/module_map_utils.F90
-models/PBL_1d/src/module_progtm.F90
-models/PBL_1d/src/module_ra_rrtm.F90
-models/PBL_1d/src/module_ra_sw.F90
-models/PBL_1d/src/module_radiation_driver.F90
-models/PBL_1d/src/module_snd_init_and_bc.F90
-models/PBL_1d/src/module_wrf_init_and_bc.F90
-models/PBL_1d/src/module_luse_init.F90
-models/PBL_1d/src/module_model_constants.F90
-models/PBL_1d/src/module_namelist.F90
-models/PBL_1d/src/module_nr_procedures.F90
-models/PBL_1d/src/module_pbl_driver.F90
-models/PBL_1d/src/module_sf_gfs.F90
-models/PBL_1d/src/module_sf_myjsfc.F90
-models/PBL_1d/src/module_sf_noahlsm.F90
-models/PBL_1d/src/module_sf_ruclsm.F90
-models/PBL_1d/src/module_sf_sfcdiags.F90
-models/PBL_1d/src/module_sf_sfclay.F90
-models/PBL_1d/src/module_sf_slab.F90
-models/PBL_1d/src/module_sf_urban.F90
-models/PBL_1d/src/module_sf_force_restore.F90
-models/PBL_1d/src/module_soil_pre.F90
-models/PBL_1d/src/module_surface_driver.F90
-models/PBL_1d/src/module_stochastic_cloud.F90
-models/PBL_1d/src/module_misc.F90
-models/PBL_1d/src/module_microphysics_driver.F90
-models/PBL_1d/src/module_mp_kessler.F90
-models/PBL_1d/src/module_mp_lin.F90
-models/PBL_1d/src/module_mp_ncloud3.F90
-models/PBL_1d/src/module_mp_ncloud5.F90
-models/PBL_1d/src/module_mp_wsm3.F90
-models/PBL_1d/src/module_mp_wsm5.F90
-models/PBL_1d/src/module_mp_wsm6.F90
-models/PBL_1d/src/module_mp_etanew.F90
-models/PBL_1d/src/module_mp_thompson.F90
-models/PBL_1d/src/module_ra_rrtm.F90
-models/PBL_1d/src/module_ra_sw.F90
-models/PBL_1d/src/module_radiation_driver.F90
-models/PBL_1d/src/tridiag.F90
-models/PBL_1d/src/module_uvg_force.F90
-models/PBL_1d/src/module_wrf.F90
-models/PBL_1d/src/module_wrf_error.F90
-models/PBL_1d/src/module_init_soil_real_fluxforce.F90
-models/PBL_1d/src/module_sf_gfs_fluxforce.F90
-models/PBL_1d/src/module_sf_myjsfc_fluxforce.F90
-models/PBL_1d/src/module_sf_sfclay_fluxforce.F90
-models/PBL_1d/src/module_sfc_init_and_bc.F90
Copied: DART/trunk/models/PBL_1d/work/path_names_obs_sequence_tool (from rev 3708, DART/trunk/models/PBL_1d/work/path_names_merge_obs_seq)
===================================================================
--- DART/trunk/models/PBL_1d/work/path_names_obs_sequence_tool (rev 0)
+++ DART/trunk/models/PBL_1d/work/path_names_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,77 @@
+obs_sequence/obs_sequence_tool.f90
+obs_sequence/obs_sequence_mod.f90
+obs_model/obs_model_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+assim_model/assim_model_mod.f90
+models/PBL_1d/model_mod.f90
+common/types_mod.f90
+sort/sort_mod.f90
+ensemble_manager/ensemble_manager_mod.f90
+location/threed_sphere/location_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
+models/PBL_1d/src/module_bl_mrf.F90
+models/PBL_1d/src/module_bl_myjpbl.F90
+models/PBL_1d/src/module_bl_ysu.F90
+models/PBL_1d/src/module_bl_gfs.F90
+models/PBL_1d/src/module_getsm.F90
+models/PBL_1d/src/module_gfs_funcphys.F90
+models/PBL_1d/src/module_ideal.F90
+models/PBL_1d/src/module_initialize.F90
+models/PBL_1d/src/module_init_soil_ideal.F90
+models/PBL_1d/src/module_init_soil_real.F90
+models/PBL_1d/src/module_interpolations.F90
+models/PBL_1d/src/module_gfs_machine.F90
+models/PBL_1d/src/module_gfs_physcons.F90
+models/PBL_1d/src/module_map_utils.F90
+models/PBL_1d/src/module_progtm.F90
+models/PBL_1d/src/module_ra_rrtm.F90
+models/PBL_1d/src/module_ra_sw.F90
+models/PBL_1d/src/module_radiation_driver.F90
+models/PBL_1d/src/module_snd_init_and_bc.F90
+models/PBL_1d/src/module_wrf_init_and_bc.F90
+models/PBL_1d/src/module_luse_init.F90
+models/PBL_1d/src/module_model_constants.F90
+models/PBL_1d/src/module_namelist.F90
+models/PBL_1d/src/module_nr_procedures.F90
+models/PBL_1d/src/module_pbl_driver.F90
+models/PBL_1d/src/module_sf_gfs.F90
+models/PBL_1d/src/module_sf_myjsfc.F90
+models/PBL_1d/src/module_sf_noahlsm.F90
+models/PBL_1d/src/module_sf_ruclsm.F90
+models/PBL_1d/src/module_sf_sfcdiags.F90
+models/PBL_1d/src/module_sf_sfclay.F90
+models/PBL_1d/src/module_sf_slab.F90
+models/PBL_1d/src/module_sf_urban.F90
+models/PBL_1d/src/module_sf_force_restore.F90
+models/PBL_1d/src/module_soil_pre.F90
+models/PBL_1d/src/module_surface_driver.F90
+models/PBL_1d/src/module_stochastic_cloud.F90
+models/PBL_1d/src/module_misc.F90
+models/PBL_1d/src/module_microphysics_driver.F90
+models/PBL_1d/src/module_mp_kessler.F90
+models/PBL_1d/src/module_mp_lin.F90
+models/PBL_1d/src/module_mp_ncloud3.F90
+models/PBL_1d/src/module_mp_ncloud5.F90
+models/PBL_1d/src/module_mp_wsm3.F90
+models/PBL_1d/src/module_mp_wsm5.F90
+models/PBL_1d/src/module_mp_wsm6.F90
+models/PBL_1d/src/module_mp_etanew.F90
+models/PBL_1d/src/module_mp_thompson.F90
+models/PBL_1d/src/module_ra_rrtm.F90
+models/PBL_1d/src/module_ra_sw.F90
+models/PBL_1d/src/module_radiation_driver.F90
+models/PBL_1d/src/tridiag.F90
+models/PBL_1d/src/module_uvg_force.F90
+models/PBL_1d/src/module_wrf.F90
+models/PBL_1d/src/module_wrf_error.F90
+models/PBL_1d/src/module_init_soil_real_fluxforce.F90
+models/PBL_1d/src/module_sf_gfs_fluxforce.F90
+models/PBL_1d/src/module_sf_myjsfc_fluxforce.F90
+models/PBL_1d/src/module_sf_sfclay_fluxforce.F90
+models/PBL_1d/src/module_sfc_init_and_bc.F90
Added: DART/trunk/models/PBL_1d/work/path_names_restart_file_tool
===================================================================
--- DART/trunk/models/PBL_1d/work/path_names_restart_file_tool (rev 0)
+++ DART/trunk/models/PBL_1d/work/path_names_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,79 @@
+utilities/restart_file_tool.f90
+ensemble_manager/ensemble_manager_mod.f90
+assim_tools/assim_tools_mod.f90
+adaptive_inflate/adaptive_inflate_mod.f90
+sort/sort_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+reg_factor/reg_factor_mod.f90
+obs_sequence/obs_sequence_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+assim_model/assim_model_mod.f90
+models/PBL_1d/model_mod.f90
+common/types_mod.f90
+location/threed_sphere/location_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
+models/PBL_1d/src/module_bl_mrf.F90
+models/PBL_1d/src/module_bl_myjpbl.F90
+models/PBL_1d/src/module_bl_ysu.F90
+models/PBL_1d/src/module_bl_gfs.F90
+models/PBL_1d/src/module_getsm.F90
+models/PBL_1d/src/module_gfs_funcphys.F90
+models/PBL_1d/src/module_ideal.F90
+models/PBL_1d/src/module_initialize.F90
+models/PBL_1d/src/module_init_soil_ideal.F90
+models/PBL_1d/src/module_init_soil_real.F90
+models/PBL_1d/src/module_interpolations.F90
+models/PBL_1d/src/module_gfs_machine.F90
+models/PBL_1d/src/module_gfs_physcons.F90
+models/PBL_1d/src/module_map_utils.F90
+models/PBL_1d/src/module_progtm.F90
+models/PBL_1d/src/module_ra_rrtm.F90
+models/PBL_1d/src/module_ra_sw.F90
+models/PBL_1d/src/module_radiation_driver.F90
+models/PBL_1d/src/module_snd_init_and_bc.F90
+models/PBL_1d/src/module_wrf_init_and_bc.F90
+models/PBL_1d/src/module_luse_init.F90
+models/PBL_1d/src/module_model_constants.F90
+models/PBL_1d/src/module_namelist.F90
+models/PBL_1d/src/module_nr_procedures.F90
+models/PBL_1d/src/module_pbl_driver.F90
+models/PBL_1d/src/module_sf_gfs.F90
+models/PBL_1d/src/module_sf_myjsfc.F90
+models/PBL_1d/src/module_sf_noahlsm.F90
+models/PBL_1d/src/module_sf_ruclsm.F90
+models/PBL_1d/src/module_sf_sfcdiags.F90
+models/PBL_1d/src/module_sf_sfclay.F90
+models/PBL_1d/src/module_sf_slab.F90
+models/PBL_1d/src/module_sf_urban.F90
+models/PBL_1d/src/module_sf_force_restore.F90
+models/PBL_1d/src/module_soil_pre.F90
+models/PBL_1d/src/module_surface_driver.F90
+models/PBL_1d/src/module_stochastic_cloud.F90
+models/PBL_1d/src/module_misc.F90
+models/PBL_1d/src/module_microphysics_driver.F90
+models/PBL_1d/src/module_mp_kessler.F90
+models/PBL_1d/src/module_mp_lin.F90
+models/PBL_1d/src/module_mp_ncloud3.F90
+models/PBL_1d/src/module_mp_ncloud5.F90
+models/PBL_1d/src/module_mp_wsm3.F90
+models/PBL_1d/src/module_mp_wsm5.F90
+models/PBL_1d/src/module_mp_wsm6.F90
+models/PBL_1d/src/module_mp_etanew.F90
+models/PBL_1d/src/module_mp_thompson.F90
+models/PBL_1d/src/module_ra_rrtm.F90
+models/PBL_1d/src/module_ra_sw.F90
+models/PBL_1d/src/module_radiation_driver.F90
+models/PBL_1d/src/tridiag.F90
+models/PBL_1d/src/module_uvg_force.F90
+models/PBL_1d/src/module_wrf.F90
+models/PBL_1d/src/module_wrf_error.F90
+models/PBL_1d/src/module_init_soil_real_fluxforce.F90
+models/PBL_1d/src/module_sf_gfs_fluxforce.F90
+models/PBL_1d/src/module_sf_myjsfc_fluxforce.F90
+models/PBL_1d/src/module_sf_sfclay_fluxforce.F90
+models/PBL_1d/src/module_sfc_init_and_bc.F90
Modified: DART/trunk/models/am2/work/input.nml
===================================================================
--- DART/trunk/models/am2/work/input.nml 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/am2/work/input.nml 2008-12-15 18:20:30 UTC (rev 3715)
@@ -162,6 +162,65 @@
&mpi_utilities_nml
/
+&obs_sequence_tool_nml
+ num_input_files = 2,
+ filename_seq = 'obs_seq.one', 'obs_seq.two',
+ filename_out = 'obs_seq.processed',
+ first_obs_days = -1,
+ first_obs_seconds = -1,
+ last_obs_days = -1,
+ last_obs_seconds = -1,
+ print_only = .false.,
+ min_lat = -90.0,
+ max_lat = 90.0,
+ min_lon = 0.0,
+ max_lon = 360.0,
+ gregorian_cal = .false.
+ /
+
+# other possible obs tool namelist items:
+#
+# keep only the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .true.,
+#
+# remove the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .false.,
+#
+# keep only observations with a DART QC of 0:
+# qc_metadata = 'Dart quality control',
+# min_qc = 0,
+# max_qc = 0,
+#
+# keep only radiosonde temp obs between 250 and 300 K:
+# copy_metadata = 'NCEP BUFR observation',
+# copy_type = 'RADIOSONDE_TEMPERATURE',
+# min_copy = 250.0,
+# max_copy = 300.0,
+#
+
+
+&restart_file_tool_nml
+ input_file_name = "filter_restart",
+ output_file_name = "filter_updated_restart",
+ ens_size = 1,
+ single_restart_file_in = .true.,
+ single_restart_file_out = .true.,
+ write_binary_restart_files = .true.,
+ overwrite_data_time = .false.,
+ new_data_days = -1,
+ new_data_secs = -1,
+ input_is_model_advance_file = .false.,
+ output_is_model_advance_file = .false.,
+ overwrite_advance_time = .false.,
+ new_advance_days = -1,
+ new_advance_secs = -1,
+ gregorian_cal = .true.
+/
+
# The times in the namelist for the obs_diag program are vectors
# that follow the following sequence:
# year month day hour minute second
@@ -190,7 +249,4 @@
print_mismatched_locs = .false.,
verbose = .false. /
-&merge_obs_seq_nml
- num_input_files = 1,
- filename_seq = 'obs_seq_bin.out',
- filename_out = 'obs_seq_ascii.out' /
+
Deleted: DART/trunk/models/am2/work/mkmf_merge_obs_seq
===================================================================
--- DART/trunk/models/am2/work/mkmf_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/am2/work/mkmf_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,15 +0,0 @@
-#!/bin/csh
-#
-# Data Assimilation Research Testbed -- DART
-# Copyright 2004-2007, Data Assimilation Research Section
-# University Corporation for Atmospheric Research
-# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
-#
-# <next few lines under version control, do not edit>
-# $URL$
-# $Id$
-# $Revision$
-# $Date$
-#
-../../../mkmf/mkmf -p merge_obs_seq -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
- -a "../../.." path_names_merge_obs_seq
Copied: DART/trunk/models/am2/work/mkmf_obs_sequence_tool (from rev 3708, DART/trunk/models/am2/work/mkmf_merge_obs_seq)
===================================================================
--- DART/trunk/models/am2/work/mkmf_obs_sequence_tool (rev 0)
+++ DART/trunk/models/am2/work/mkmf_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL$
+# $Id$
+# $Revision$
+# $Date$
+#
+../../../mkmf/mkmf -p obs_sequence_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_obs_sequence_tool
Added: DART/trunk/models/am2/work/mkmf_restart_file_tool
===================================================================
--- DART/trunk/models/am2/work/mkmf_restart_file_tool (rev 0)
+++ DART/trunk/models/am2/work/mkmf_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL: https://subversion.ucar.edu/DAReS/DART/trunk/models/am2/work/mkmf_restart_file_tool $
+# $Id: mkmf_restart_file_tool 3440 2008-07-01 23:07:15Z thoar $
+# $Revision: 3440 $
+# $Date: 2008-07-01 17:07:15 -0600 (Tue, 01 Jul 2008) $
+#
+../../../mkmf/mkmf -p restart_file_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_restart_file_tool
Property changes on: DART/trunk/models/am2/work/mkmf_restart_file_tool
___________________________________________________________________
Name: svn:executable
+ *
Deleted: DART/trunk/models/am2/work/path_names_merge_obs_seq
===================================================================
--- DART/trunk/models/am2/work/path_names_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/am2/work/path_names_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,14 +0,0 @@
-obs_sequence/merge_obs_seq.f90
-obs_sequence/obs_sequence_mod.f90
-obs_kind/obs_kind_mod.f90
-obs_def/obs_def_mod.f90
-cov_cutoff/cov_cutoff_mod.f90
-assim_model/assim_model_mod.f90
-models/am2/model_mod.f90
-common/types_mod.f90
-location/threed_sphere/location_mod.f90
-random_seq/random_seq_mod.f90
-random_nr/random_nr_mod.f90
-time_manager/time_manager_mod.f90
-utilities/utilities_mod.f90
-mpi_utilities/null_mpi_utilities_mod.f90
Copied: DART/trunk/models/am2/work/path_names_obs_sequence_tool (from rev 3708, DART/trunk/models/am2/work/path_names_merge_obs_seq)
===================================================================
--- DART/trunk/models/am2/work/path_names_obs_sequence_tool (rev 0)
+++ DART/trunk/models/am2/work/path_names_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,14 @@
+obs_sequence/obs_sequence_tool.f90
+obs_sequence/obs_sequence_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+assim_model/assim_model_mod.f90
+models/am2/model_mod.f90
+common/types_mod.f90
+location/threed_sphere/location_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
Added: DART/trunk/models/am2/work/path_names_restart_file_tool
===================================================================
--- DART/trunk/models/am2/work/path_names_restart_file_tool (rev 0)
+++ DART/trunk/models/am2/work/path_names_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,19 @@
+utilities/restart_file_tool.f90
+ensemble_manager/ensemble_manager_mod.f90
+assim_tools/assim_tools_mod.f90
+adaptive_inflate/adaptive_inflate_mod.f90
+sort/sort_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+reg_factor/reg_factor_mod.f90
+obs_sequence/obs_sequence_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+assim_model/assim_model_mod.f90
+models/am2/model_mod.f90
+common/types_mod.f90
+location/threed_sphere/location_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
Modified: DART/trunk/models/pe2lyr/work/input.nml
===================================================================
--- DART/trunk/models/pe2lyr/work/input.nml 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/pe2lyr/work/input.nml 2008-12-15 18:20:30 UTC (rev 3715)
@@ -122,27 +122,65 @@
logfilename = 'dart_log.out',
nmlfilename = 'dart_log.nml' /
-&restart_file_utility_nml
+&obs_sequence_tool_nml
+ num_input_files = 2,
+ filename_seq = 'obs_seq.one', 'obs_seq.two',
+ filename_out = 'obs_seq.processed',
+ first_obs_days = -1,
+ first_obs_seconds = -1,
+ last_obs_days = -1,
+ last_obs_seconds = -1,
+ print_only = .false.,
+ min_lat = -90.0,
+ max_lat = 90.0,
+ min_lon = 0.0,
+ max_lon = 360.0,
+ gregorian_cal = .false.
+ /
+
+# other possible obs tool namelist items:
+#
+# keep only the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .true.,
+#
+# remove the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .false.,
+#
+# keep only observations with a DART QC of 0:
+# qc_metadata = 'Dart quality control',
+# min_qc = 0,
+# max_qc = 0,
+#
+# keep only radiosonde temp obs between 250 and 300 K:
+# copy_metadata = 'NCEP BUFR observation',
+# copy_type = 'RADIOSONDE_TEMPERATURE',
+# min_copy = 250.0,
+# max_copy = 300.0,
+#
+
+
+&restart_file_tool_nml
input_file_name = "filter_restart",
output_file_name = "filter_updated_restart",
- ens_size = 1,
+ ens_size = 1,
single_restart_file_in = .true.,
single_restart_file_out = .true.,
write_binary_restart_files = .true.,
overwrite_data_time = .false.,
- new_data_days = -1,
- new_data_secs = -1,
+ new_data_days = -1,
+ new_data_secs = -1,
input_is_model_advance_file = .false.,
output_is_model_advance_file = .false.,
overwrite_advance_time = .false.,
- new_advance_days = -1,
- new_advance_secs = -1 /
+ new_advance_days = -1,
+ new_advance_secs = -1,
+ gregorian_cal = .false.
+/
-&merge_obs_seq_nml
- num_input_files = 2,
- filename_seq = 'obs_seq.one', 'obs_seq.two',
- filename_out = 'obs_seq.merged' /
-
# The times in the namelist for the obs_diag program are vectors
# that follow the following sequence:
# year month day hour minute second
Deleted: DART/trunk/models/pe2lyr/work/mkmf_merge_obs_seq
===================================================================
--- DART/trunk/models/pe2lyr/work/mkmf_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/pe2lyr/work/mkmf_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,15 +0,0 @@
-#!/bin/csh
-#
-# Data Assimilation Research Testbed -- DART
-# Copyright 2004-2007, Data Assimilation Research Section
-# University Corporation for Atmospheric Research
-# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
-#
-# <next few lines under version control, do not edit>
-# $URL$
-# $Id$
-# $Revision$
-# $Date$
-#
-../../../mkmf/mkmf -p merge_obs_seq -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
- -a "../../.." path_names_merge_obs_seq
Copied: DART/trunk/models/pe2lyr/work/mkmf_obs_sequence_tool (from rev 3708, DART/trunk/models/pe2lyr/work/mkmf_merge_obs_seq)
===================================================================
--- DART/trunk/models/pe2lyr/work/mkmf_obs_sequence_tool (rev 0)
+++ DART/trunk/models/pe2lyr/work/mkmf_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL$
+# $Id$
+# $Revision$
+# $Date$
+#
+../../../mkmf/mkmf -p obs_sequence_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_obs_sequence_tool
Added: DART/trunk/models/pe2lyr/work/mkmf_restart_file_tool
===================================================================
--- DART/trunk/models/pe2lyr/work/mkmf_restart_file_tool (rev 0)
+++ DART/trunk/models/pe2lyr/work/mkmf_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL: https://subversion.ucar.edu/DAReS/DART/trunk/models/pe2lyr/work/mkmf_restart_file_tool $
+# $Id: mkmf_restart_file_tool 3440 2008-07-01 23:07:15Z thoar $
+# $Revision: 3440 $
+# $Date: 2008-07-01 17:07:15 -0600 (Tue, 01 Jul 2008) $
+#
+../../../mkmf/mkmf -p restart_file_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_restart_file_tool
Property changes on: DART/trunk/models/pe2lyr/work/mkmf_restart_file_tool
___________________________________________________________________
Name: svn:executable
+ *
Deleted: DART/trunk/models/pe2lyr/work/path_names_merge_obs_seq
===================================================================
--- DART/trunk/models/pe2lyr/work/path_names_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/pe2lyr/work/path_names_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,16 +0,0 @@
-obs_sequence/merge_obs_seq.f90
-obs_sequence/obs_sequence_mod.f90
-obs_kind/obs_kind_mod.f90
-obs_def/obs_def_mod.f90
-cov_cutoff/cov_cutoff_mod.f90
-assim_model/assim_model_mod.f90
-common/types_mod.f90
-location/threed_sphere/location_mod.f90
-time_manager/time_manager_mod.f90
-utilities/utilities_mod.f90
-mpi_utilities/null_mpi_utilities_mod.f90
-random_seq/random_seq_mod.f90
-random_nr/random_nr_mod.f90
-models/pe2lyr/model_mod.f90
-models/pe2lyr/pe2lyr_mod.f90
-models/pe2lyr/spharmt_mod.f90
Copied: DART/trunk/models/pe2lyr/work/path_names_obs_sequence_tool (from rev 3708, DART/trunk/models/pe2lyr/work/path_names_merge_obs_seq)
===================================================================
--- DART/trunk/models/pe2lyr/work/path_names_obs_sequence_tool (rev 0)
+++ DART/trunk/models/pe2lyr/work/path_names_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,16 @@
+obs_sequence/obs_sequence_tool.f90
+obs_sequence/obs_sequence_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+assim_model/assim_model_mod.f90
+common/types_mod.f90
+location/threed_sphere/location_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+models/pe2lyr/model_mod.f90
+models/pe2lyr/pe2lyr_mod.f90
+models/pe2lyr/spharmt_mod.f90
Added: DART/trunk/models/pe2lyr/work/path_names_restart_file_tool
===================================================================
--- DART/trunk/models/pe2lyr/work/path_names_restart_file_tool (rev 0)
+++ DART/trunk/models/pe2lyr/work/path_names_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,21 @@
+utilities/restart_file_tool.f90
+ensemble_manager/ensemble_manager_mod.f90
+assim_tools/assim_tools_mod.f90
+adaptive_inflate/adaptive_inflate_mod.f90
+sort/sort_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+reg_factor/reg_factor_mod.f90
+obs_sequence/obs_sequence_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+assim_model/assim_model_mod.f90
+common/types_mod.f90
+location/threed_sphere/location_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
+models/pe2lyr/model_mod.f90
+models/pe2lyr/pe2lyr_mod.f90
+models/pe2lyr/spharmt_mod.f90
Modified: DART/trunk/models/template/work/input.nml
===================================================================
--- DART/trunk/models/template/work/input.nml 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/template/work/input.nml 2008-12-15 18:20:30 UTC (rev 3715)
@@ -114,26 +114,65 @@
output_obs_kind_mod_file = '../../../obs_kind/obs_kind_mod.f90',
input_files = '../../../obs_def/obs_def_1d_state_mod.f90' /
-&restart_file_utility_nml
+&obs_sequence_tool_nml
+ num_input_files = 2,
+ filename_seq = 'obs_seq.one', 'obs_seq.two',
+ filename_out = 'obs_seq.processed',
+ first_obs_days = -1,
+ first_obs_seconds = -1,
+ last_obs_days = -1,
+ last_obs_seconds = -1,
+ print_only = .false.,
+ min_lat = -90.0,
+ max_lat = 90.0,
+ min_lon = 0.0,
+ max_lon = 360.0,
+ gregorian_cal = .false.
+ /
+
+# other possible obs tool namelist items:
+#
+# keep only the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .true.,
+#
+# remove the U and V radiosonde winds:
+# obs_types = 'RADIOSONDE_U_WIND_COMPONENT',
+# 'RADIOSONDE_V_WIND_COMPONENT',
+# keep_types = .false.,
+#
+# keep only observations with a DART QC of 0:
+# qc_metadata = 'Dart quality control',
+# min_qc = 0,
+# max_qc = 0,
+#
+# keep only radiosonde temp obs between 250 and 300 K:
+# copy_metadata = 'NCEP BUFR observation',
+# copy_type = 'RADIOSONDE_TEMPERATURE',
+# min_copy = 250.0,
+# max_copy = 300.0,
+#
+
+
+&restart_file_tool_nml
input_file_name = "filter_restart",
output_file_name = "filter_updated_restart",
- ens_size = 1,
+ ens_size = 1,
single_restart_file_in = .true.,
single_restart_file_out = .true.,
write_binary_restart_files = .true.,
overwrite_data_time = .false.,
- new_data_days = -1,
- new_data_secs = -1,
+ new_data_days = -1,
+ new_data_secs = -1,
input_is_model_advance_file = .false.,
output_is_model_advance_file = .false.,
overwrite_advance_time = .false.,
- new_advance_days = -1,
- new_advance_secs = -1 /
+ new_advance_days = -1,
+ new_advance_secs = -1,
+ gregorian_cal = .true.
+/
-&merge_obs_seq_nml
- num_input_files = 2,
- filename_seq = 'obs_seq.one', 'obs_seq.two',
- filename_out = 'obs_seq.merged' /
&obs_diag_nml
obs_sequence_name = 'obs_seq.final',
Deleted: DART/trunk/models/template/work/mkmf_merge_obs_seq
===================================================================
--- DART/trunk/models/template/work/mkmf_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/template/work/mkmf_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,15 +0,0 @@
-#!/bin/csh
-#
-# Data Assimilation Research Testbed -- DART
-# Copyright 2004-2007, Data Assimilation Research Section
-# University Corporation for Atmospheric Research
-# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
-#
-# <next few lines under version control, do not edit>
-# $URL$
-# $Id$
-# $Revision$
-# $Date$
-#
-../../../mkmf/mkmf -p merge_obs_seq -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
- -a "../../.." path_names_merge_obs_seq
Copied: DART/trunk/models/template/work/mkmf_obs_sequence_tool (from rev 3708, DART/trunk/models/template/work/mkmf_merge_obs_seq)
===================================================================
--- DART/trunk/models/template/work/mkmf_obs_sequence_tool (rev 0)
+++ DART/trunk/models/template/work/mkmf_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL$
+# $Id$
+# $Revision$
+# $Date$
+#
+../../../mkmf/mkmf -p obs_sequence_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_obs_sequence_tool
Added: DART/trunk/models/template/work/mkmf_restart_file_tool
===================================================================
--- DART/trunk/models/template/work/mkmf_restart_file_tool (rev 0)
+++ DART/trunk/models/template/work/mkmf_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,15 @@
+#!/bin/csh
+#
+# Data Assimilation Research Testbed -- DART
+# Copyright 2004-2007, Data Assimilation Research Section
+# University Corporation for Atmospheric Research
+# Licensed under the GPL -- www.gpl.org/licenses/gpl.html
+#
+# <next few lines under version control, do not edit>
+# $URL: https://subversion.ucar.edu/DAReS/DART/trunk/models/template/work/mkmf_restart_file_tool $
+# $Id: mkmf_restart_file_tool 3440 2008-07-01 23:07:15Z thoar $
+# $Revision: 3440 $
+# $Date: 2008-07-01 17:07:15 -0600 (Tue, 01 Jul 2008) $
+#
+../../../mkmf/mkmf -p restart_file_tool -t ../../../mkmf/mkmf.template -c"-Duse_netCDF" \
+ -a "../../.." path_names_restart_file_tool
Property changes on: DART/trunk/models/template/work/mkmf_restart_file_tool
___________________________________________________________________
Name: svn:executable
+ *
Deleted: DART/trunk/models/template/work/path_names_merge_obs_seq
===================================================================
--- DART/trunk/models/template/work/path_names_merge_obs_seq 2008-12-15 17:00:27 UTC (rev 3714)
+++ DART/trunk/models/template/work/path_names_merge_obs_seq 2008-12-15 18:20:30 UTC (rev 3715)
@@ -1,14 +0,0 @@
-obs_sequence/merge_obs_seq.f90
-obs_sequence/obs_sequence_mod.f90
-obs_kind/obs_kind_mod.f90
-obs_def/obs_def_mod.f90
-cov_cutoff/cov_cutoff_mod.f90
-assim_model/assim_model_mod.f90
-models/template/model_mod.f90
-common/types_mod.f90
-location/oned/location_mod.f90
-random_seq/random_seq_mod.f90
-random_nr/random_nr_mod.f90
-time_manager/time_manager_mod.f90
-utilities/utilities_mod.f90
-mpi_utilities/null_mpi_utilities_mod.f90
Copied: DART/trunk/models/template/work/path_names_obs_sequence_tool (from rev 3708, DART/trunk/models/template/work/path_names_merge_obs_seq)
===================================================================
--- DART/trunk/models/template/work/path_names_obs_sequence_tool (rev 0)
+++ DART/trunk/models/template/work/path_names_obs_sequence_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,14 @@
+obs_sequence/obs_sequence_tool.f90
+obs_sequence/obs_sequence_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+assim_model/assim_model_mod.f90
+models/template/model_mod.f90
+common/types_mod.f90
+location/oned/location_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
Added: DART/trunk/models/template/work/path_names_restart_file_tool
===================================================================
--- DART/trunk/models/template/work/path_names_restart_file_tool (rev 0)
+++ DART/trunk/models/template/work/path_names_restart_file_tool 2008-12-15 18:20:30 UTC (rev 3715)
@@ -0,0 +1,19 @@
+utilities/restart_file_tool.f90
+ensemble_manager/ensemble_manager_mod.f90
+assim_tools/assim_tools_mod.f90
+adaptive_inflate/adaptive_inflate_mod.f90
+sort/sort_mod.f90
+cov_cutoff/cov_cutoff_mod.f90
+reg_factor/reg_factor_mod.f90
+obs_sequence/obs_sequence_mod.f90
+obs_kind/obs_kind_mod.f90
+obs_def/obs_def_mod.f90
+assim_model/assim_model_mod.f90
+models/template/model_mod.f90
+common/types_mod.f90
+location/threed_sphere/location_mod.f90
+random_seq/random_seq_mod.f90
+random_nr/random_nr_mod.f90
+time_manager/time_manager_mod.f90
+utilities/utilities_mod.f90
+mpi_utilities/null_mpi_utilities_mod.f90
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