[Wrf-users] Fwd: Error in running ./wrf.exe

Muhammadhn Muhammadh Khalid kmmuhammadh at gmail.com
Tue Jul 19 10:38:53 MDT 2016


Dear Users,

I ran the ./wrf.exe comand after putting screen. Later when I attach the
screen and see I'm getting the following error message. can you please help
me?

hpcuser1 at aiken:~$ screen -r 59145
Timing for main: time 2005-09-04_09:08:20 on domain   3:    1.05192 elapsed
seconds
Timing for main: time 2005-09-04_09:08:40 on domain   3:    1.05568 elapsed
seconds
Timing for main: time 2005-09-04_09:09:00 on domain   3:    1.05700 elapsed
seconds
Timing for main: time 2005-09-04_09:09:00 on domain   2:    4.98925 elapsed
seconds
Timing for main: time 2005-09-04_09:09:00 on domain   1:   17.27786 elapsed
seconds
 WOULD GO OFF TOP: KF_ETA_PARA I,J,DPTHMX,DPMIN          23          17
         NaN   5000.00000

Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.

Backtrace for this error:
#0  0x7F504338D777
#1  0x7F504338DD7E
#2  0x7F5042AC9CAF
#3  0x20CC7CC in __module_cu_kfeta_MOD_kf_eta_para
#4  0x20E3FC7 in __module_cu_kfeta_MOD_kf_eta_cps
#5  0x1B3A205 in __module_cumulus_driver_MOD_cumulus_driver
#6  0x1583457 in __module_first_rk_step_part1_MOD_first_rk_step_part1
#7  0xFEF6A7 in solve_em_
#8  0xEFB6B6 in solve_interface_
#9  0x46402A in __module_integrate_MOD_integrate
#10  0x404AE3 in __module_wrf_top_MOD_wrf_run
Segmentation fault (core dumped)


Following is my namelist file for wrf


&time_control
run_days                 = 1,
run_hours                = 0,
run_minutes              = 0,
run_seconds              = 0,
start_year               = 2005,     2005,     2005,
start_month              = 09,       09,       09,
start_day                = 03,       03,       03,
start_hour               = 18,       18,       18,
start_minute             = 00,       00,       00,
start_second             = 00,       00,       00,
end_year                 = 2005,     2005,     2005,
end_month                = 09,       09,       09,
end_day                  = 04,       04,       04,
end_hour                 = 18,       18,       18,
end_minute               = 00,       00,       00,
end_second               = 00,       00,       00,
interval_seconds         = 21600,
input_from_file          = .true.,   .true.,   .true.,
history_interval         = 180,       60,       60,
frames_per_outfile       = 1000,     1000,     1000,
restart                  = .false.,
restart_interval         = 5000,
io_form_history          = 2,
io_form_restart          = 2,
io_form_input            = 2,
io_form_boundary         = 2,
debug_level              = 0,
/

&domains
eta_levels               = 1.000, 0.9655, 0.931, 0.8966, 0.8621,
                0.8276, 0.7931, 0.7586, 0.7241, 0.6897,
                0.6552, 0.6207, 0.5862, 0.5517, 0.5172,
                0.4828, 0.4483, 0.4138, 0.3793, 0.3448,
                0.3103, 0.2759, 0.2414, 0.2069, 0.1724,
                0.1379, 0.1034, 0.069, 0.0345, 0.000,
time_step                = 180,
time_step_fract_num      = 0,
time_step_fract_den      = 1,
max_dom                  = 3,
e_we                     = 100,       88,       73,
e_sn                     = 109,       97,       82,
e_vert                   = 30,       30,       30,
p_top_requested          = 5000.0,
num_metgrid_levels       = 27,
num_metgrid_soil_levels  = 4,
dx                       = 30000,    10000, 3333.333,
dy                       = 30000,    10000, 3333.333,
grid_id                  = 1,        2,        3,
parent_id                = 1,        1,        2,
i_parent_start           = 1,       36,       30,
j_parent_start           = 1,       40,       32,
parent_grid_ratio        = 1,        3,        3,
parent_time_step_ratio   = 1,        3,        3,
feedback                 = 1,
smooth_option            = 0,
/

&physics
mp_physics               = 2,        2,        2,
ra_lw_physics            = 1,        1,        1,
ra_sw_physics            = 3,        3,        3,
radt                     = 30,       30,       30,
sf_sfclay_physics        = 1,        1,        1,
sf_surface_physics       = 2,        2,        2,
bl_pbl_physics           = 1,        1,        1,
bldt                     = 0,        0,        0,
cu_physics               = 1,        1,        1,
cudt                     = 5,        5,        5,
isfflx                   = 1,
ifsnow                   = 0,
icloud                   = 1,
surface_input_source     = 1,
num_soil_layers          = 4,
sf_urban_physics         = 0,        0,        0,
maxiens                  = 1,
maxens                   = 3,
maxens2                  = 3,
maxens3                  = 16,
ensdim                   = 144,
/

&fdda
/

&dynamics
w_damping                = 0,
diff_opt                 = 1,
km_opt                   = 4,
diff_6th_opt             = 0,        0,        0,
diff_6th_factor          = 0.12,     0.12,     0.12,
base_temp                = 290.,
damp_opt                 = 0,
zdamp                    = 5000.,    5000.,    5000.,
dampcoef                 = 0.2,      0.2,      0.2,
khdif                    = 0,        0,        0,
kvdif                    = 0,        0,        0,
non_hydrostatic          = .true.,   .true.,   .true.,
moist_adv_opt            = 1,        1,        1,
scalar_adv_opt           = 1,        1,        1,
/

&bdy_control
spec_bdy_width           = 5,
spec_zone                = 1,
relax_zone               = 4,
specified                = .true.,  .false.,  .false.,
nested                   = .false.,   .true.,   .true.,
/

&grib2
/

&namelist_quilt
nio_tasks_per_group      = 0,
nio_groups               = 1,
/






Following is the namelist of my WPS

&share
 wrf_core = 'ARW',
 max_dom = 3,
 start_date = '2005-09-03_18:00:00', '2005-09-03_18:00:00', '
2005-09-03_18:00:00',
 end_date   = '2005-09-04_18:00:00', '2005-09-04_18:00:00', '
2005-09-04_18:00:00',
 interval_seconds = 21600,
 io_form_geogrid = 2,
 opt_output_from_geogrid_path =
'/export/localhome/hpcuser1/RUNS/calibration/mphysics2002.05.10/wps/',
 debug_level = 0,
/

&geogrid
 parent_id         = 1,1,2,
 parent_grid_ratio = 1,3,3,
 i_parent_start    = 1,36,30,
 j_parent_start    = 1,40,32,
 e_we          = 100,88,73,
 e_sn          = 109,97,82,
 geog_data_res = '10m','10m','10m',
 dx = 30000,
 dy = 30000,
 map_proj =  'mercator',
 ref_lat   = 7.519,
 ref_lon   = 80.952,
 truelat1  = 7.519,
 truelat2  = 0,
 stand_lon = 80.952,
 geog_data_path = '/export/localhome/hpcuser1/GEO_DATA/',
 opt_geogrid_tbl_path =
'/export/localhome/hpcuser1/RUNS/calibration/mphysics2002.05.10/wps/',
 ref_x = 50.0,
 ref_y = 54.5,
/

&ungrib
 out_format = 'WPS',
 prefix = 'FNL',
/

&metgrid
 fg_name = 'FNL',
 io_form_metgrid = 2,
 opt_output_from_metgrid_path =
'/export/localhome/hpcuser1/RUNS/calibration/mphysics2002.05.10/wps/',
 opt_metgrid_tbl_path =
'/export/localhome/hpcuser1/RUNS/calibration/mphysics2002.05.10/wps/',
/

&mod_levs
 press_pa = 201300 , 200100 , 100000 ,
             95000 ,  90000 ,
             85000 ,  80000 ,
             75000 ,  70000 ,
             65000 ,  60000 ,
             55000 ,  50000 ,
             45000 ,  40000 ,
             35000 ,  30000 ,
             25000 ,  20000 ,
             15000 ,  10000 ,
              5000 ,   1000
 /


&domain_wizard
 grib_data_path = '/export/localhome/hpcuser1/Gribb_data/2005.05.10/',
 grib_vtable = 'Vtable.GFS',
 dwiz_name    =New
 dwiz_desc    =
 dwiz_user_rect_x1 =1367
 dwiz_user_rect_y1 =357
 dwiz_user_rect_x2 =1570
 dwiz_user_rect_y2 =572
 dwiz_show_political =true
 dwiz_center_over_gmt =true
 dwiz_latlon_space_in_deg =10
 dwiz_latlon_linecolor =-8355712
 dwiz_map_scale_pct =12.5
 dwiz_map_vert_scrollbar_pos =0
 dwiz_map_horiz_scrollbar_pos =0
 dwiz_gridpt_dist_km =30.0
 dwiz_mpi_command =
 dwiz_tcvitals =null
 dwiz_bigmap =Y
/


-- 
Regards,
Muhammadh M Khalid
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