[Wrf-users] [WRF 3.5.1, smpar, Intel] undefined reference to `__kmpc_global_thread_num' building "external/io_int"

Wed Mar 5 05:43:02 MST 2014

Dear Sirs!

I'm trying to compile WRF 3.5.1 with 'smpar' option as suggested by
Mahally Kudsy, using Intel compilers on RHEL 5.10 system and now WRF
3.5.1 won't compile with the following errors:

------------------------
make[2]: Entering directory `/home/dotcoder/src/WRFV3/external/io_int'
if [ -f ../../frame/pack_utils.o -a -f ../../frame/clog.o ] ; then \
          ifort -ip -w -ftz -align all -fno-alias -FR -convert
big_endian -xHost -fp-model fast=2 -no-heap-arrays -no-prec-div
-no-prec-sqrt -fno-common    -I../ioapi_share -o diffwrf diffwrf.f \
                ../../frame/pack_utils.o
../../frame/module_internal_header_util.o
../../frame/module_driver_constants.o ../../frame/module_machine.o
../../frame/module_wrf_error.o ../../frame/wrf_debug.o
-L/home/dotcoder/src/WRFV3/exter
nal/esmf_time_f90 -lesmf_time libwrfio_int.a ; \
        fi
ifort: command line remark #10382: option '-xHOST' setting '-xSSE4.2'
../../frame/module_wrf_error.o: In function `wrf_message_':
module_wrf_error.f90:(.text+0x27): undefined reference to
`__kmpc_global_thread_num'
module_wrf_error.f90:(.text+0x3b): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x12a): undefined reference to `__kmpc_end_master'
../../frame/module_wrf_error.o: In function `wrf_message2_':
module_wrf_error.f90:(.text+0x16a): undefined reference to
`__kmpc_global_thread_num'
module_wrf_error.f90:(.text+0x17b): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x1ce): undefined reference to `__kmpc_end_master'
../../frame/module_wrf_error.o: In function `wrf_check_error_':
module_wrf_error.f90:(.text+0x21b): undefined reference to
`__kmpc_global_thread_num'
module_wrf_error.f90:(.text+0x3b7): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x4bc): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x590): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x6a4): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x6ca): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x7c5): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x7e5): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x8ea): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x913): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x96c): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0xa33): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0xa84): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0xac8): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0xb1c): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0xb34): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0xb8d): undefined reference to `__kmpc_end_master'
../../frame/module_wrf_error.o: In function `wrf_error_fatal_':
module_wrf_error.f90:(.text+0xc3b): undefined reference to
`__kmpc_global_thread_num'
module_wrf_error.f90:(.text+0xca3): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0xda8): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0xdc4): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0xecf): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0xeeb): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0xff0): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x101a): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x1073): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x10b0): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x1104): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x111c): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x1175): undefined reference to `__kmpc_end_master'
../../frame/module_wrf_error.o: In function `wrf_error_fatal3_':
module_wrf_error.f90:(.text+0x1228): undefined reference to
`__kmpc_global_thread_num'
module_wrf_error.f90:(.text+0x128c): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x13a1): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x1471): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x15a7): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x15d1): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x16e4): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x1704): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x1819): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x1843): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x189c): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x1957): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x19a8): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x19f3): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x1a47): undefined reference to `__kmpc_end_master'
module_wrf_error.f90:(.text+0x1a5f): undefined reference to `__kmpc_master'
module_wrf_error.f90:(.text+0x1ab8): undefined reference to `__kmpc_end_master'
make[2]: [diffwrf] Error 1 (ignored)
make[2]: Leaving directory `/home/dotcoder/src/WRFV3/external/io_int'
make[1]: Leaving directory `/home/dotcoder/src/WRFV3'
------------------------

Intel Compiler Version:
------------------------
Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on
Intel(R) 64, Version 14.0.2.144 Build 20140120
Copyright (C) 1985-2014 Intel Corporation.  All rights reserved.
FOR NON-COMMERCIAL USE ONLY
------------------------

I have the following environment variables:
------------------------
NETCDF=/usr/local/netcdf-4.3.1.1/
JASPERINC=/usr/local/jasper-1.900.1/include/
JASPERLIB=/usr/local/jasper-1.900.1/lib/
WRFIO_NCD_LARGE_FILE_SUPPORT=1
INCLUDE=/opt/intel/composer_xe_2013_sp1.2.144/mkl/include:/opt/intel/composer_xe_2013_sp1.2.144/compiler/include/:/usr/local/netcdf-4.3.1.1/include/:/usr/local/jasper-1.900.1/include/:/usr/local/hdf5-1.8.12/include/:/usr/local/zlib-1.2.8/include/
------------------------

I can successfully compile both .f and .cpp sample files with an '-openmp' flag.

Can you, please, suggest possible workarounds?

Please, find attached 'configure.wrf' and gzipped compile.log files,
if you need more information.

Thanks!

With the best regards,
Meder Bakirov

P.S. My previous build of WRF 3.5.1 (dmpar) was successfull, thanks to
Dmitry Mikushin.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: compile.log.gz
Type: application/x-gzip
Size: 29659 bytes
Desc: not available
Url : http://mailman.ucar.edu/pipermail/wrf-users/attachments/20140305/e3fd3850/attachment-0001.gz 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: configure.wrf
Type: application/octet-stream
Size: 22984 bytes
Desc: not available
Url : http://mailman.ucar.edu/pipermail/wrf-users/attachments/20140305/e3fd3850/attachment-0001.obj 