[Wrf-users] WRF Compilation Error
Dmitry N. Mikushin
maemarcus at gmail.com
Tue Aug 9 11:21:24 MDT 2011
Good, let's look here:
if [ -f $(NETCDFPATH)/lib/libnetcdff.a ] ; then \
$(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL)
bitwise_operators.o ../../frame/wrf_debug.o
../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) -lnetcdff ;\
else \
$(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL)
bitwise_operators.o ../../frame/wrf_debug.o
../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) ;\
fi ; \
<-- it handles two cases: either file $(NETCDFPATH)/lib/libnetcdff.a
exists and then it is added to the linker arguments, or else it is
not. I don't know what it means, maybe diffwrf could be built without
netcdf support or can provide its own implementations? Anyway, if it
falls into "else" brach and those unresolved symbols are from
libnetcdff, then that's the problem. Could you check
$(NETCDFPATH)/lib/libnetcdff.a exists and/or add debugging echo
"Check"; line to the beginning of the "else" branch and see if it is
reached?
- D.
2011/8/9 Huber, David <dbh409 at ku.edu>:
> Hi Dmitry,
>
> Thanks for the reply. It took a little digging, but I found the makefile with this command in WRFV3/external/ionetcdf/makefile. Here's the block for diffwrf.F90:
>
> diffwrf: diffwrf.F90
> x=`echo "$(FC)" | awk '{print $$1}'` ; export x ; \
> if [ $$x = "gfortran" ] ; then \
> echo removing external declaration of iargc for gfortran ; \
> $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\
> else \
> $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \
> fi
> $(FC) -c $(FFLAGS) diffwrf.f
> if [ \( -f ../../frame/wrf_debug.o \) -a \( -f ../../frame/module_wrf_error.o \) -a \( -f $(ESMF_MOD_DEPENDENCE) \) ] ; then \
> echo "diffwrf io_netcdf is being built now. " ; \
> if [ -f $(NETCDFPATH)/lib/libnetcdff.a ] ; then \
> $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) bitwise_operators.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) -lnetcdff ;\
> else \
> $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) bitwise_operators.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) ;\
> fi ; \
> else \
> echo "***************************************************************************** " ; \
> echo "*** Rerun compile to make diffwrf in external/io_netcdf directory *** " ; \
> echo "***************************************************************************** " ; \
> fi
>
>
> There was an @ before the line
> if[\( -f ../../frame/wrf_debug.o \) ...
> which I deleted, but the output did not change.
> I see the link for netcdff and the $LIBS, which is comprised of
> LIBS = -L$(NETCDFPATH)/lib -lnetcdf
>
> -Dave
>
>
> ________________________________________
> From: Dmitry N. Mikushin [maemarcus at gmail.com]
> Sent: Tuesday, August 09, 2011 10:44 AM
> To: Huber, David
> Cc: wrf-users at ucar.edu
> Subject: Re: [Wrf-users] WRF Compilation Error
>
> Hi,
>
>> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about.
>
> - This is usually harmless and is always around with Intel compiler.
>
>> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
>> wrf_io.o: In function `ext_ncd_get_var_info_':
>> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
>> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
>> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
>> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
>> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
>> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'
>
> These are unresolved externals, which should normally occur, if proper
> library is not added to the link command.
>
> Could you print out the exact linking command it is using?
>
>> diffwrf io_netcdf is being built now.
>
> - I suppose, linking command should go in the Makefile right after
> echoing "diffwrf io_netcdf is being built now". If it starts with "@",
> then it's hidden. Remove "@", and you will see the command. Once,
> exact command is known, it should be much easier to understand what's
> wrong.
>
> - D.
>
>
> 2011/8/9 Huber, David <dbh409 at ku.edu>:
>> Hello,
>>
>> I'm having an issue compiling WRF V3.1.1 with the Intel compilers using a multi-processor (dmpar) build. NCAR Graphics (6.0.0) and NetCDF (4.1.3) are also built with the Intel compilers. The configure.wrf file contents (minus comments) and a list of the environmental variables are shown at the end of this message. The following is the first of several warning/undefined reference messages:
>>
>>
>> ifort -w -ftz -align all -fno-alias -fp-model precise -FR -convert big_endian -c -I/usr/local/include -I../ioapi_share diffwrf.f
>> diffwrf.f(1629): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1630): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1709): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1710): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1711): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1712): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf io_netcdf is being built now.
>> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
>> wrf_io.o: In function `ext_ncd_get_var_info_':
>> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
>> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
>> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
>> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
>> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
>> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'
>>
>>
>> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about. I have successfully built WRF and WPS on this system before, but this is the first time I have tried it with everything compiled with icc and ifort. Any suggestions would be much appreciated.
>>
>> Thanks,
>>
>> Dave
>>
>>
>> configure.wrf:
>>
>>
>> SHELL = /bin/sh
>> DEVTOP = `pwd`
>> LIBINCLUDE = .
>> .SUFFIXES: .F .i .o .f90 .c
>>
>> COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
>> -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
>> -DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
>> -DDA_CORE=$(WRF_DA_CORE) \
>>
>> -DEXP_CORE=$(WRF_EXP_CORE)
>>
>>
>> MAX_DOMAINS = 21
>>
>> CONFIG_BUF_LEN = 32768
>>
>>
>> NATIVE_RWORDSIZE = 4
>>
>> SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe
>>
>> IO_GRIB_SHARE_DIR =
>>
>> ESMF_COUPLING = 0
>> ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
>>
>> ESMF_IO_INC = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
>> ESMF_MOD_INC = $(ESMF_IO_INC)
>> ESMF_IO_DEFS =
>> ESMF_TARGET = esmf_time
>>
>>
>> LIBWRFLIB = libwrflib.a
>>
>>
>> DMPARALLEL = 1
>> OMPCPP = # -D_OPENMP
>> OMP = # -openmp -fpp -auto
>> SFC = ifort
>> SCC = icc
>> DM_FC = mpif90 -f90=$(SFC)
>> DM_CC = mpicc -cc=$(SCC) -DMPI2_SUPPORT
>> FC = $(DM_FC)
>> CC = $(DM_CC) -DFSEEKO64_OK
>> LD = $(FC)
>> RWORDSIZE = $(NATIVE_RWORDSIZE)
>> PROMOTION = -i4
>> ARCH_LOCAL = -DNONSTANDARD_SYSTEM_FUNC
>> CFLAGS_LOCAL = -w -O3 -ip
>> LDFLAGS_LOCAL = -ip
>> CPLUSPLUSLIB =
>> ESMF_LDFLAG = $(CPLUSPLUSLIB)
>> FCOPTIM = -O3
>> FCREDUCEDOPT = $(FCOPTIM)
>> FCNOOPT = -O0 -fno-inline -fno-ip
>> FCDEBUG = # -g $(FCNOOPT) -traceback
>> FORMAT_FIXED = -FI
>> FORMAT_FREE = -FR
>> FCSUFFIX =
>> BYTESWAPIO = -convert big_endian
>> FCBASEOPTS = -w -ftz -align all -fno-alias -fp-model precise $(FCDEBUG) $(FORMAT_FREE) $(BYTESWAPIO)
>> MODULE_SRCH_FLAG =
>> TRADFLAG = -traditional
>> CPP = /lib/cpp -C -P
>> AR = ar
>> ARFLAGS = ru
>> M4 = m4
>> RANLIB = ranlib
>> CC_TOOLS = $(SCC)
>>
>> FGREP = fgrep -iq
>>
>> ARCHFLAGS = $(COREDEFS) -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=4 \
>> $(ARCH_LOCAL) \
>> $(DA_ARCHFLAGS) \
>> -DDM_PARALLEL \
>>
>> \
>> -DNETCDF \
>> \
>> \
>> \
>> \
>> \
>> \
>> -DGRIB1 \
>> -DINTIO \
>> -DLIMIT_ARGS \
>> -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
>> -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
>> -DNMM_NEST=$(WRF_NMM_NEST)
>> CFLAGS = $(CFLAGS_LOCAL) -DDM_PARALLEL
>> FCFLAGS = $(FCOPTIM) $(FCBASEOPTS)
>> ESMF_LIB_FLAGS =
>> ESMF_IO_LIB = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
>> ESMF_IO_LIB_EXT = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
>> INCLUDE_MODULES = $(MODULE_SRCH_FLAG) \
>> $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
>> -I$(WRF_SRC_ROOT_DIR)/main \
>> -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
>> -I$(WRF_SRC_ROOT_DIR)/external/io_int \
>> -I$(WRF_SRC_ROOT_DIR)/frame \
>> -I$(WRF_SRC_ROOT_DIR)/share \
>> -I$(WRF_SRC_ROOT_DIR)/phys \
>> -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
>> \
>>
>> REGISTRY = Registry
>>
>> LIB_BUNDLED = \
>> -L$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 -lfftpack \
>> -L$(WRF_SRC_ROOT_DIR)/external/io_grib1 -lio_grib1 \
>> -L$(WRF_SRC_ROOT_DIR)/external/io_grib_share -lio_grib_share \
>> -L$(WRF_SRC_ROOT_DIR)/external/io_int -lwrfio_int \
>> $(ESMF_IO_LIB) \
>> $(ESMF_IO_LIB) \
>> $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
>> $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
>> $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
>>
>> LIB_EXTERNAL = \
>>
>> $(WRF_SRC_ROOT_DIR)/external/io_netcdf/libwrfio_nf.a -L/usr/local/lib -lnetcdff -lnetcdf
>>
>> LIB = $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
>> LDFLAGS = $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
>> ENVCOMPDEFS =
>> WRF_CHEM = 0
>> CPPFLAGS = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
>> NETCDFPATH = /usr/local
>> PNETCDFPATH =
>>
>> bundled: wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack
>> external: wrfio_nf $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
>>
>> ######################
>> externals: bundled external
>>
>> gen_comms_serial :
>> ( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )
>>
>> module_dm_serial :
>> ( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )
>>
>> gen_comms_rsllite :
>> ( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
>> /bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
>> cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )
>>
>> module_dm_rsllite :
>> ( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
>> cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
>>
>> wrfio_nf :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
>> make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> CC="$(SCC)" CFLAGS="$(CFLAGS)" \
>> FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> wrfio_pnf :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
>> make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>>
>>
>> wrfio_grib_share :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
>> make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>>
>> wrfio_grib1 :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
>> make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>>
>> wrfio_grib2 :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
>> make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
>> CPP="$(CPP)" \
>> FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
>> FIXED="$(FORMAT_FIXED)" archive)
>>
>> wrfio_int :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
>> make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" \
>> TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" all )
>>
>> esmf_time :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
>> make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
>> CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> fftpack :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
>> make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
>> FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
>> CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
>> $(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )
>>
>>
>> LN = ln -sf
>> MAKE = make -i -r
>> RM = rm -f
>>
>>
>> # These sub-directory builds are identical across all architectures
>>
>> wrf_ioapi_includes :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
>> $(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> wrfio_esmf :
>> ( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
>> make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
>> RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> # There is probably no reason to modify these rules
>>
>> .F.i:
>> $(RM) $@
>> $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
>> mv $*.i $(DEVTOP)/pick/$*.f90
>> cp $*.F $(DEVTOP)/pick
>>
>> .F.o:
>> $(RM) $@
>> $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F > $*.bb
>> $(SED_FTN) $*.bb | $(CPP) > $*.f90
>> $(RM) $*.b $*.bb
>> if $(FGREP) '!$$OMP' $*.f90 ; then \
>> if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>> $(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
>> else \
>> if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>> $(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
>> fi
>>
>>
>> .F.f90:
>> $(RM) $@
>> $(SED_FTN) $*.F > $*.b
>> $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b > $@
>> $(RM) $*.b
>>
>>
>> .f90.o:
>> $(RM) $@
>> $(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90
>>
>> .c.o:
>> $(RM) $@
>> $(CC) -o $@ -c $(CFLAGS) $*.c
>>
>> # A little more adventurous. Allow full opt on
>> # mediation_integrate.o \
>> # shift_domain_em.o \
>> # solve_em.o <-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
>> # mediation_feedback_domain.o : mediation_feedback_domain.F
>> # mediation_force_domain.o : mediation_force_domain.F
>> # mediation_interp_domain.o : mediation_interp_domain.F
>>
>> # compile these without high optimization to speed compile
>> convert_nmm.o : convert_nmm.F
>> init_modules_em.o : init_modules_em.F
>> input_wrf.o : input_wrf.F
>> module_io.o : module_io.F
>> module_comm_dm.o : module_comm_dm.F
>> module_configure.o : module_configure.F
>> module_dm.o : module_dm.F
>> module_domain.o : module_domain.F
>> module_domain_type.o : module_domain_type.F
>> module_alloc_space.o : module_alloc_space.F
>> module_tiles.o : module_tiles.F
>> module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
>> module_initialize.o : module_initialize.F
>> module_physics_init.o : module_physics_init.F
>> module_initialize_b_wave.o : module_initialize_b_wave.F
>> module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
>> module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
>> module_initialize_real.o : module_initialize_real.F
>> module_initialize_real.o: module_initialize_real.F
>> module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
>> module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
>> module_integrate.o : module_integrate.F
>> module_io_mm5.o : module_io_mm5.F
>> module_io_wrf.o : module_io_wrf.F
>> module_si_io.o : module_si_io.F
>> module_state_description.o : module_state_description.F
>> output_wrf.o : output_wrf.F
>>
>>
>> NMM_NEST_UTILS1.o : NMM_NEST_UTILS1.F
>> solve_interface.o : solve_interface.F
>> start_domain.o : start_domain.F
>> start_domain_nmm.o : start_domain_nmm.F
>> start_em.o : start_em.F
>> wrf_auxhist10in.o : wrf_auxhist10in.F
>> wrf_auxhist10out.o : wrf_auxhist10out.F
>> wrf_auxhist11in.o : wrf_auxhist11in.F
>> wrf_auxhist11out.o : wrf_auxhist11out.F
>> wrf_auxhist1in.o : wrf_auxhist1in.F
>> wrf_auxhist1out.o : wrf_auxhist1out.F
>> wrf_auxhist2in.o : wrf_auxhist2in.F
>> wrf_auxhist2out.o : wrf_auxhist2out.F
>> wrf_auxhist3in.o : wrf_auxhist3in.F
>> wrf_auxhist3out.o : wrf_auxhist3out.F
>> wrf_auxhist4in.o : wrf_auxhist4in.F
>> wrf_auxhist4out.o : wrf_auxhist4out.F
>> wrf_auxhist5in.o : wrf_auxhist5in.F
>> wrf_auxhist5out.o : wrf_auxhist5out.F
>> wrf_auxhist6in.o : wrf_auxhist6in.F
>> wrf_auxhist6out.o : wrf_auxhist6out.F
>> wrf_auxhist7in.o : wrf_auxhist7in.F
>> wrf_auxhist7out.o : wrf_auxhist7out.F
>> wrf_auxhist8in.o : wrf_auxhist8in.F
>> wrf_auxhist8out.o : wrf_auxhist8out.F
>> wrf_auxhist9in.o : wrf_auxhist9in.F
>> wrf_auxhist9out.o : wrf_auxhist9out.F
>> wrf_auxinput10in.o : wrf_auxinput10in.F
>> wrf_auxinput10out.o : wrf_auxinput10out.F
>> wrf_auxinput11in.o : wrf_auxinput11in.F
>> wrf_auxinput11out.o : wrf_auxinput11out.F
>> wrf_auxinput1in.o : wrf_auxinput1in.F
>> wrf_auxinput1out.o : wrf_auxinput1out.F
>> wrf_auxinput2in.o : wrf_auxinput2in.F
>> wrf_auxinput2out.o : wrf_auxinput2out.F
>> wrf_auxinput3in.o : wrf_auxinput3in.F
>> wrf_auxinput3out.o : wrf_auxinput3out.F
>> wrf_auxinput4in.o : wrf_auxinput4in.F
>> wrf_auxinput4out.o : wrf_auxinput4out.F
>> wrf_auxinput5in.o : wrf_auxinput5in.F
>> wrf_auxinput5out.o : wrf_auxinput5out.F
>> wrf_auxinput6in.o : wrf_auxinput6in.F
>> wrf_auxinput6out.o : wrf_auxinput6out.F
>> wrf_auxinput7in.o : wrf_auxinput7in.F
>>
>> wrf_auxinput7out.o : wrf_auxinput7out.F
>> wrf_auxinput8in.o : wrf_auxinput8in.F
>> wrf_auxinput8out.o : wrf_auxinput8out.F
>> wrf_auxinput9in.o : wrf_auxinput9in.F
>> wrf_auxinput9out.o : wrf_auxinput9out.F
>> wrf_bdyin.o : wrf_bdyin.F
>> wrf_bdyout.o : wrf_bdyout.F
>> wrf_ext_read_field.o : wrf_ext_read_field.F
>> wrf_ext_write_field.o : wrf_ext_write_field.F
>> wrf_fddaobs_in.o : wrf_fddaobs_in.F
>> wrf_histin.o : wrf_histin.F
>> wrf_histout.o : wrf_histout.F
>> wrf_inputin.o : wrf_inputin.F
>> wrf_inputout.o : wrf_inputout.F
>> wrf_restartin.o : wrf_restartin.F
>> wrf_restartout.o : wrf_restartout.F
>> wrf_tsin.o : wrf_tsin.F
>> nl_get_0_routines.o : nl_get_0_routines.F
>> nl_get_1_routines.o : nl_get_1_routines.F
>> nl_set_0_routines.o : nl_set_0_routines.F
>> nl_set_1_routines.o : nl_set_1_routines.F
>>
>> convert_nmm.o \
>> init_modules_em.o \
>> module_dm.o \
>> module_fddaobs_rtfdda.o \
>> module_initialize.o \
>> module_initialize_b_wave.o \
>> module_initialize_hill2d_x.o \
>> module_initialize_quarter_ss.o \
>> module_initialize_real.o \
>> module_initialize_squall2d_x.o \
>> module_initialize_squall2d_y.o \
>> module_integrate.o \
>> module_io_mm5.o \
>> module_io_wrf.o \
>> module_si_io.o \
>> module_tiles.o \
>> output_wrf.o \
>> NMM_NEST_UTILS1.o \
>> solve_interface.o \
>> start_domain.o \
>> start_domain_nmm.o \
>> shift_domain_nmm.o \
>>
>> start_em.o \
>> wrf_fddaobs_in.o \
>> wrf_tsin.o :
>> $(RM) $@
>> $(SED_FTN) $*.F > $*.b
>> $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b > $*.f90
>> $(RM) $*.b
>> if $(FGREP) '!$$OMP' $*.f90 ; then \
>> if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>> $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
>> else \
>> if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>> $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
>> fi
>>
>> module_sf_ruclsm.o : module_sf_ruclsm.F
>>
>> module_sf_ruclsm.o :
>> $(RM) $@
>> $(SED_FTN) $*.F > $*.b
>> $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b > $*.f90
>> $(RM) $*.b
>> if $(FGREP) '!$$OMP' $*.f90 ; then \
>> echo COMPILING $*.F WITH OMP ; \
>> if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>> $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
>> else \
>> if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>> $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
>> fi
>>
>> input_wrf.o \
>> module_domain.o \
>> module_domain_type.o \
>> module_physics_init.o \
>> module_io.o \
>>
>> wrf_auxhist10in.o \
>> wrf_auxhist10out.o \
>> wrf_auxhist11in.o \
>> wrf_auxhist11out.o \
>> wrf_auxhist1in.o \
>> wrf_auxhist1out.o \
>> wrf_auxhist2in.o \
>> wrf_auxhist2out.o \
>> wrf_auxhist3in.o \
>> wrf_auxhist3out.o \
>> wrf_auxhist4in.o \
>> wrf_auxhist4out.o \
>> wrf_auxhist5in.o \
>> wrf_auxhist5out.o \
>> wrf_auxhist6in.o \
>> wrf_auxhist6out.o \
>> wrf_auxhist7in.o \
>> wrf_auxhist7out.o \
>> wrf_auxhist8in.o \
>> wrf_auxhist8out.o \
>> wrf_auxhist9in.o \
>> wrf_auxhist9out.o \
>> wrf_auxinput10in.o \
>> wrf_auxinput10out.o \
>> wrf_auxinput11in.o \
>> wrf_auxinput11out.o \
>> wrf_auxinput1in.o \
>> wrf_auxinput1out.o \
>> wrf_auxinput2in.o \
>> wrf_auxinput2out.o \
>> wrf_auxinput3in.o \
>> wrf_auxinput3out.o \
>> wrf_auxinput4in.o \
>> wrf_auxinput4out.o \
>> wrf_auxinput5in.o \
>> wrf_auxinput5out.o \
>> wrf_auxinput6in.o \
>> wrf_auxinput6out.o \
>>
>> wrf_auxinput7in.o \
>> wrf_auxinput7out.o \
>> wrf_auxinput8in.o \
>> wrf_auxinput8out.o \
>> wrf_auxinput9in.o \
>> wrf_auxinput9out.o \
>> wrf_bdyin.o \
>> wrf_bdyout.o \
>> wrf_ext_read_field.o \
>> wrf_ext_write_field.o \
>> wrf_histin.o \
>> wrf_histout.o \
>> wrf_inputin.o \
>> wrf_inputout.o \
>> wrf_restartin.o \
>> wrf_restartout.o \
>> module_state_description.o \
>> nl_set_0_routines.o \
>> nl_set_1_routines.o \
>> nl_get_0_routines.o \
>> nl_get_1_routines.o \
>> module_alloc_space.o \
>> module_comm_dm.o \
>> module_configure.o :
>> $(RM) $@
>> $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F > $*.bb
>> $(SED_FTN) $*.bb | $(CPP) > $*.f90
>> $(RM) $*.b $*.bb
>> $(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90
>>
>>
>> Environmental Variables:
>>
>>
>> USER=dbh409
>> LOGNAME=dbh409
>> HOME=/home/dbh409
>> PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/bin:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/bin:/usr/local/intel/11.0/084/bin/intel64:/usr/local/intel/11.0/084/bin/intel64:/usr/local/maui/bin:/usr/local/maui/sbin:/usr/local/torque/bin:/usr/local/torque/sbin:/usr/local/Modules/3.2.6/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/home/software/netCDF/3.6.3/intel/mvapich/bin:/usr/local/ncarg_ifort/bin:.
>> MAIL=/var/spool/mail/dbh409
>> SHELL=/bin/tcsh
>> SSH_CLIENT=10.237.0.175 49359 22
>> SSH_CONNECTION=10.237.0.175 49359 129.237.228.235 22
>> SSH_TTY=/dev/pts/3
>> TERM=xterm
>> HOSTTYPE=x86_64-linux
>> VENDOR=unknown
>> OSTYPE=linux
>> MACHTYPE=x86_64
>> SHLVL=1
>> PWD=/home/dbh409/WRFV3
>> GROUP=dbh409
>> HOST=pequod
>> REMOTEHOST=10.237.0.175
>> HOSTNAME=pequod
>> INPUTRC=/etc/inputrc
>> LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.ogg=01;35:*.mp3=01;35:*.wav=01;35:
>> G_BROKEN_FILENAMES=1
>> SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
>> KDE_IS_PRELINKED=1
>> KDEDIR=/usr
>> LANG=en_US.UTF-8
>> LESSOPEN=|/usr/bin/lesspipe.sh %s
>> MANPATH=/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/share/man:/usr/local/intel/11.0/084/man:/usr/local/intel/11.0/084/man:/usr/local/maui/man:/usr/local/torque/man:/usr/local/Modules/3.2.6/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man
>> QTDIR=/usr/lib64/qt-3.3
>> QTINC=/usr/lib64/qt-3.3/include
>> QTLIB=/usr/lib64/qt-3.3/lib
>> MODULE_VERSION=3.2.6
>> MODULE_VERSION_STACK=3.2.6
>> MODULESHOME=/usr/local/Modules/3.2.6
>> MODULEPATH=/usr/local/Modules/versions:/usr/local/Modules/$MODULE_VERSION/modulefiles:/usr/local/Modules/modulefiles:
>> LOADEDMODULES=null:modules:tools/torque-maui:compilers/64/intel-x86_64:openmpi/openmpi-1.3.2-ethernet-intel.64:tools/netcdf-4.1.3-intel:mpich2/mpich2-1.0.7-ethernet-intel.64
>> CC=/usr/local/intel/11.0/084/bin/intel64/icc
>> CCHOME=/usr/local/intel/11.0/084
>> CXX=/usr/local/intel/11.0/084/bin/intel64/icpc
>> F77=/usr/local/intel/11.0/084/bin/intel64/ifort
>> F90=/usr/local/intel/11.0/084/bin/intel64/ifort
>> FC=/usr/local/intel/11.0/084/bin/intel64/ifort
>> FCHOME=/usr/local/intel/11.0/084
>> INTEL_LICENSE_FILE=/opt/intel/licenses/l_RH4JJF9H.lic
>> LD_LIBRARY_PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/lib:/usr/local/lib:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/lib:/usr/local/intel/11.0/084/lib/intel64:/usr/local/maui/lib:/usr/local/torque/lib
>> MPIHOME=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0
>> NETCDF=/usr/local
>> _LMFILES_=/usr/local/Modules/modulefiles/null:/usr/local/Modules/modulefiles/modules:/usr/local/Modules/modulefiles/tools/torque-maui:/usr/local/Modules/modulefiles/compilers/64/intel-x86_64:/usr/local/Modules/modulefiles/openmpi/openmpi-1.3.2-ethernet-intel.64:/usr/local/Modules/modulefiles/tools/netcdf-4.1.3-intel:/usr/local/Modules/modulefiles/mpich2/mpich2-1.0.7-ethernet-intel.64
>> NCARG_ROOT=/usr/local/ncarg_ifort
>> RIP_ROOT=/home/dbh409/RIP4
>> ITT_DIR=/usr/local/itt
>> IDL_DIR=/usr/local/itt/idl71
>>
>>
>> The NetCDF build location is /usr/local/ a slight accident, but I don't think it makes a difference that it's not /usr/local/netcdf-4.1.3.
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
>
>
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