[Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
Kevin R. Tyle
ktyle at atmos.albany.edu
Tue Apr 26 16:30:41 MDT 2011
Hi Andrew,
Here is the diff between the original configure.wrf and the one that
worked for me. It is all in the LIB_EXTERNAL line in the makefile:
216c216
< -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf
-lwrfio_nf -L/usr/local/lib -lnetcdf
-L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/usr/local/lib64
-ljasper -lsz -lhdf5_hl -lhdf5 -lcurl
---
> -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf
-lwrfio_nf -L/usr/local/lib64 -lnetcdf -lnetcdff
-L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/usr/local/lib
-ljasper -lsz -lhdf5_hl -lhdf5 -lcurl
Note that I build netcdf4 with support for hdf5 and szip, as well as for
curl, so that's why you see those four extra libraries at the end. I
first modify the $WRF/arch/postamble_new file so these libraries will be
included when configure is run:
diff postamble_new postamble_new.orig
58c58
< #NOWIN CONFIGURE_NETCDF_LIB_PATH
CONFIGURE_PNETCDF_LIB_PATH CONFIGURE_GRIB2_LIB CONFIGURE_ATMOCN_LIB -lsz
-lhdf5_hl -lhdf5 -lcurl
---
> #NOWIN CONFIGURE_NETCDF_LIB_PATH
CONFIGURE_PNETCDF_LIB_PATH CONFIGURE_GRIB2_LIB CONFIGURE_ATMOCN_LIB
My WRF build for dmpar on a single machine is preceded by the building
of szip2.1, hdf5-1.8.5-patch1, netcdf-4.1.2, and jasper-1.900.1 with the
intel compilers. The configure lines I invoke are as follows:
szip: configure --prefix=/usr/local --libdir=/usr/local/lib64
hdf5: configure --enable-cxx --enable-shared --enable-fortran
--with-szlib=/usr/local --libdir=/usr/local/lib64 --prefix=/usr/local
netcdf4: configure --enable-netcdf-4 --disable-cxx --enable-benchmarks
--enable-ncgen4 --with-hdf5=/usr/local --with-szlib=/usr/local
--libdir=/usr/local/lib64
jasper: configure --prefix=/usr/local --libdir=/usr/local/lib64
Meanwhile, for WPS, I modified arch/preamble:
diff preamble preamble.orig
51c51
< -L$(NETCDF)/lib CONFIGURE_NETCDFF_LIB
-lnetcdff -lnetcdf
---
> -L$(NETCDF)/lib CONFIGURE_NETCDFF_LIB -lnetcdf
I also modified arch/configure.defaults:
diff configure.defaults configure.defaults.orig
352c352
< SCC = icc
---
> SCC = gcc
I'm not sure if this is really necessary or even foolhardy, but this way
at least everything is built with the intel compilers.
And, since my NCAR Graphics were built with the Gnu compilers, I had to
manually change one line in configure.wps after running configure:
24c24
< -L/usr/X11R6/lib -lX11
---
> -L/usr/X11R6/lib -lX11 -lgfortran
This is on a 64bit CentOS 5.6 machine with Intel compilers 11.1.
I hope this is helpful!
--Kevin
______________________________________________________________________
Kevin Tyle, Systems Administrator **********************
Dept. of Atmospheric & Environmental Sciences ktyle at atmos.albany.edu
University at Albany, ES-235 518-442-4578 (voice)
1400 Washington Avenue 518-442-5825 (fax)
Albany, NY 12222 **********************
______________________________________________________________________
On 04/26/2011 03:19 AM, Andrew Penny wrote:
> Hi Kevin,
>
> Where does that addition need to be made? For WRF version 3.3 (at least),
> if the "libnetcdff.a" file is present, it gets added automatically to the
> paths in the 'LIB_EXTERNAL' variable. Does it need to be added to any
> other variable?
>
> Could you send us your NetCDF config script, or the flags/environment
> variables that you used?
>
> Thanks!
> Andrew
>
> On Apr 25, 2011, at 6:55 PM, Kevin R. Tyle wrote:
>
>> Hi Andrew and Rebecca,
>>
>> netCDF 4.1.2 now splits off the FORTRAN libraries into libnetcdff.a. I
>> had to manually add "-lnetcdff" into my configure.wrf file in my WRFV3
>> build directory in order to eliminate the link errors you are seeing.
>>
>> Hope this helps . . .
>>
>> --Kevin
>>
>> ______________________________________________________________________
>> Kevin Tyle, Systems Administrator **********************
>> Dept. of Atmospheric& Environmental Sciences ktyle at atmos.albany.edu
>> University at Albany, ES-235 518-442-4578 (voice)
>> 1400 Washington Avenue 518-442-5825 (fax)
>> Albany, NY 12222 **********************
>> ______________________________________________________________________
>>
>> On Mon, 25 Apr 2011, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:
>>
>>> Andrew,
>>>
>>> Excellent, glad that's not it!
>>>
>>> However, the problem still is that your netcdf library isn't linking in correctly. I recognize all those undefined references from when my netcdf library didn't link. I can't find in your compilation options below where you define your netcdf path. Could you possibly be linking to a 32-bit version instead of 64-bit?
>>>
>>> Becky Adams Selin
>>> Atmospheric& Environmental Research, Inc.
>>> AFWA 16th Wx Sqdn (402) 294-5273
>>>
>>>
>>> -----Original Message-----
>>> From: Andrew Penny [mailto:andybpenny at hotmail.com]
>>> Sent: Monday, April 25, 2011 4:11 PM
>>> To: Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
>>> Subject: Re: [Wrf-users] error compiling (icc& ifort) WRFV3.3 with NetCDF V4.12
>>>
>>> Hi Becky,
>>>
>>> The '/path/to/netcdf' is not an actual directory - it was meant to be
>>> simply a placeholder for the NetCDF install location. It is declared
>>> correctly for the LIB_EXTERNAL variable.
>>>
>>> Andrew Penny
>>> Research Associate - Meteorology Department
>>> Naval Postgraduate School
>>> Monterey, CA 93943
>>> Phone: (831) 656-3101
>>>
>>>
>>>
>>>
>>> On Apr 25, 2011, at 12:29 PM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:
>>>
>>>> Andrew - Looks like your netcdf library isn't linking in correctly. In your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf path.
>>>>
>>>> Becky Adams Selin
>>>> Atmospheric& Environmental Research, Inc.
>>>> AFWA 16th Wx Sqdn (402) 294-5273
>>>>
>>>>
>>>> -----Original Message-----
>>>> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Andrew Penny
>>>> Sent: Monday, April 25, 2011 2:23 PM
>>>> To: wrf-users at ucar.edu
>>>> Subject: [Wrf-users] error compiling (icc& ifort) WRFV3.3 with NetCDF V4.12
>>>>
>>>> We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.
>>>>
>>>> Here are the compilation options we are using for NetCDF 4.1.2:
>>>>
>>>> ---------------------------------------------------
>>>> export CC=mpicc
>>>> export CXX=mpicxx
>>>>
>>>> export FC=mpif90
>>>> export F77=mpif77
>>>> export F90=mpif90
>>>>
>>>> export CPP='icpc -E'
>>>> export CXXCPP='icpc -E'
>>>>
>>>> export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>>> export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>>> export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'
>>>>
>>>> export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>>>
>>>> export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"
>>>>
>>>> ./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
>>>> ---------------------------------------------------
>>>>
>>>>
>>>> The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.
>>>>
>>>>
>>>> Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:
>>>>
>>>> ---------------------------------------------------
>>>> LIB_EXTERNAL = \
>>>> -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
>>>> ---------------------------------------------------
>>>>
>>>> Here are the error messages that show up during the './compile em_real' process:
>>>>
>>>> ---------------------------------------------------
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
>>>> fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
>>>> fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
>>>> fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
>>>> fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
>>>> fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
>>>> fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
>>>> fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
>>>> fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
>>>> fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
>>>> fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
>>>> fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
>>>> fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
>>>> fort-control.c:(.text+0x64): undefined reference to `nc_create'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
>>>> fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
>>>> fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
>>>> fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
>>>> fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
>>>> fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
>>>> fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
>>>> fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
>>>> fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
>>>> fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
>>>> fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
>>>> fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
>>>> fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
>>>> fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
>>>> fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
>>>> fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
>>>> fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
>>>> fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
>>>> fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
>>>> fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
>>>> fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
>>>> fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
>>>> fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
>>>> fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
>>>> fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
>>>> fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
>>>> fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
>>>> fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
>>>> fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
>>>> fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
>>>> fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
>>>> fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
>>>> fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
>>>> fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
>>>> fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
>>>> fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
>>>> fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
>>>> fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
>>>> fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
>>>> fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
>>>> fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
>>>> fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
>>>> fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
>>>> fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
>>>> fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
>>>> fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
>>>> fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
>>>> fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
>>>> fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
>>>> fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
>>>> fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
>>>> fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
>>>> fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
>>>> fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
>>>> fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
>>>> fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
>>>> fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
>>>> fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
>>>> fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
>>>> fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
>>>> fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
>>>> fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
>>>> fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
>>>> fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
>>>> fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
>>>> fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
>>>> fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
>>>> fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
>>>> fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
>>>> fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
>>>> fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
>>>> fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
>>>> fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
>>>> fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
>>>> fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
>>>> fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
>>>> fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
>>>> fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
>>>> fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
>>>> fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>>>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>>>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>>>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>>>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
>>>> fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
>>>> fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
>>>> fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
>>>> fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
>>>> fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
>>>> fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
>>>> fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
>>>> fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
>>>> make[2]: [diffwrf] Error 1 (ignored)
>>>>
>>>> ---------------------------------------------------
>>>>
>>>>
>>>> What are we doing wrong here?
>>>>
>>>> Thanks
>>>>
>>>>
>>>> Andrew Penny
>>>> Research Associate - Meteorology Department Naval Postgraduate School Monterey, CA 93943
>>>> Phone: (831) 656-3101
>>>>
>>>>
>>>>
>>>>
>>>>
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>>>
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