From hedde.cea at gmail.com  Mon Jan  3 08:20:04 2011
From: hedde.cea at gmail.com (Thierry HEDDE)
Date: Mon, 3 Jan 2011 16:20:04 +0100
Subject: [Wrf-users] Resolution of global data
In-Reply-To: <624705.6571.qm@web76010.mail.sg1.yahoo.com>
References: <624705.6571.qm@web76010.mail.sg1.yahoo.com>
Message-ID: <AANLkTinRdLU-irBHL9ZnPnRCS5+GqQK=S3dBcu_y8Zod@mail.gmail.com>

I didn't see any response to your mail so here is one :

2.5? is not 250km !!!!
Along an earth circumference (a meridian for example) 1 minute of angle is 1
nautic mile (nm) which is 1852m. you may apply this rule to latitudes
(1?=60min=60nm=~111km). For longitudes unless  you live on equator you have
to multiply by cos(phi) where phi is the longitude.

Cordially
Thierry HEDDE

2010/12/7 Asnor Muizan Ishak <asnorjps at yahoo.com.my>

>  Dear Everyone,
>
> May I ask you all a question about the degree of resolution for global data
> for intance ECMWF. This global data is consider as a input for WRF or MM5 as
> well. According to ECMWF, the data could be downloaded from 2.5 degree up to
> 0.0 degree. The 2.5 degree is equal to 250km, am I right? But in my case I
> have used 1.0 degree data and therefore should I set my courses domain with
> 100km resolution as well due to the 1.0 degree resolution? Is this will make
> huge error after post processing? At the moment my course domain is 81km and
> 27km and finest domain are 3km and 1km (I have 2 cases here). Therefore,
> does anyone can help me about this conflict of information. I tried to find
> this information via the guide line or procedures but until now I cant find
> it. Please everyone to help me about this information.
>
> Many thanks in advance.
> Asnor
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 
Thierry HEDDE
Laboratoire de Mod?lisation des Transferts dans l'Environnement
CEA/CADARACHE
DEN/DTN/SMTM/LMTE
B?t. 307 Pi?ce 9
13108 ST PAUL LEZ DURANCE CEDEX
FRANCE
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From Don.Morton at alaska.edu  Wed Jan  5 17:00:57 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Wed, 5 Jan 2011 15:00:57 -0900
Subject: [Wrf-users] Alaska Weather Symposium, 15-16 March 2011,
	Call for Abstracts
Message-ID: <AANLkTinkZT5JLWYfopuC941GV7xTEo3Dkmop=qA-AO5J@mail.gmail.com>

        The 2011 Alaska Weather Symposium (AWS '11)
                    15-16 March 2011
            University of Alaska Fairbanks

                Call for Abstracts

Symposium Web Page:  http://weather.arsc.edu/Events/AWS11/

Symposium flyer suitable for adorning to walls, windows, doors, etc.
http://weather.arsc.edu/Events/AWS11/AWS-2011-Flyer.pdf


The following sponsors (listed alphabetically)


   - Alaska Region, NOAA National Weather Service
   - Arctic Region Supercomputing Center (UAF)
   - College of Natural Science and Mathematics (UAF)
   - Geophysical Institute (UAF)
   - International Arctic Research Center (UAF)


invite you to attend the 2011 Alaska Weather Symposium.  The symposium
provides a forum for the exchange of operational and research information
related to weather in the Alaska environment. Participation from academic,
research, government, military, and private sectors is encouraged.

Primary areas of focus are anticipated to be

   - Air quality
   - Data assimilation
   - Models and evaluation for arctic systems
   - Boundary layer processes
   - Communication of predictability and uncertainty


However, as usual, all abstracts relating to weather in Alaska are welcome

--Schedule/Venue--
This will be a two-day symposium held at the University of Alaska Fairbanks
campus on Tuesday and Wednesday, 15-16 March 2011.  Snacks will be provided
and evening meals will be on-your-own, with an organized evening out (pay on
your own) at a local establishment.

--Abstract Submission--
The deadline for one-paragraph abstracts for a 20-minute presentation is
Tuesday, 25 January 2011.  See the symposium web page for abstract
submission procedures.

--Registration--
Registration is required by Tuesday, 08 March 2011.  See the symposium web
page for registration instructions.  There is no registration fee.


Symposium Web Page:  http://weather.arsc.edu/Events/AWS11/
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From Chris.Franks at noaa.gov  Wed Jan  5 14:49:16 2011
From: Chris.Franks at noaa.gov (Chris Franks)
Date: Wed, 05 Jan 2011 15:49:16 -0600
Subject: [Wrf-users] WPP Error
Message-ID: <4D24E75C.4010709@noaa.gov>

Greetings All,

I am new to the list...but have seen this error message being discussed 
before in other places.

I'm getting this kind of error:

+ mv WRFPRS001.tm00 WRFPRS_d01.001
mv: cannot stat `WRFPRS001.tm00': No such file or directory
+ ls -l WRFPRS_d01.001
ls: cannot access WRFPRS_d01.001: No such file or directory
+ err1=2
+ test 2 -ne 0
+ echo 'WRF POST FAILED, EXITTING'
WRF POST FAILED, EXITTING
+ exit

Does anyone have a working script that processes 15-min data?

If I have 15-min WRF netCDF output, do I have to use something like this 
post process (found this online):

Thanks, Chris
___________________________________________________________________

*# Specify forecast start date
# fhr is the first forecast hour to be post-processed
# lastfhr is the last forecast hour to be post-processed
# incrementhr is the incement (in hours) between forecast files

export startdate=2010061200
export fhr=00
export lastfhr=48
export incrementhr=01
export incrementmin=15
export lastmin=45

# Path names for WRF_POSTPROC and WRFV3

export WRF_POSTPROC_HOME=${TOP_DIR}/WPPV3
export POSTEXEC=${WRF_POSTPROC_HOME}/exec
export SCRIPTS=${WRF_POSTPROC_HOME}/scripts
export WRFPATH=${TOP_DIR}/WRFV3

# cd to working directory
cd ${DOMAINPATH}/postprd

# Link Ferrier's microphysic's table and WRF-POSTPROC control file,

ln -fs ${WRFPATH}/run/ETAMPNEW_DATA eta_micro_lookup.dat
ln -fs ${DOMAINPATH}/parm/wrf_cntrl.parm .

export tmmark=tm00
export MP_SHARED_MEMORY=yes
export MP_LABELIO=yes

#######################################################
# 1. Run WRF-POSTPROC
#
# The WRF-POSTPROC is used to read native WRF model
# output and put out isobaric state fields and derived fields.
#
#######################################################

pwd
ls -x

export NEWDATE=$startdate

YYi=`echo $NEWDATE | cut -c1-4`
MMi=`echo $NEWDATE | cut -c5-6`
DDi=`echo $NEWDATE | cut -c7-8`
HHi=`echo $NEWDATE | cut -c9-10`

while [ $fhr -le $lastfhr ] ; do

typeset -Z3 fhr

NEWDATE=`${POSTEXEC}/ndate.exe +${fhr} $startdate`

YY=`echo $NEWDATE | cut -c1-4`
MM=`echo $NEWDATE | cut -c5-6`
DD=`echo $NEWDATE | cut -c7-8`
HH=`echo $NEWDATE | cut -c9-10`

echo 'NEWDATE' $NEWDATE
echo 'YY' $YY
export min=00

while [ $min -le $lastmin ] ; do

#for domain in d01 d02 d03
for domain in d02
do

echo '*****-----*****-----*****----*****'

cat > itag <<EOF
../wrfout_${domain}_${YYi}-${MMi}-${DDi}_${HHi}:00:00
netcdf
${YY}-${MM}-${DD}_${HH}:$min:00
${tag}
EOF

#-----------------------------------------------------------------------
#   Run wrfpost.
#-----------------------------------------------------------------------

rm fort.*

ln -sf wrf_cntrl.parm fort.14
ln -sf griddef.out fort.110
${POSTEXEC}/wrfpost.exe < itag >  wrfpost_${domain}.$fhr.out 2>&1

if [ $min = 00 ]; then
mv WRFPRS$fhr.tm00 WRFPRS_${domain}.${fhr}_${min}
else
mv WRFPRS$fhr:$min.tm00 WRFPRS_${domain}.${fhr}_${min}
fi*

From mkudsy at gmail.com  Wed Jan  5 18:53:26 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Thu, 6 Jan 2011 08:53:26 +0700
Subject: [Wrf-users] Error in two-way nesting
Message-ID: <AANLkTinzt9-NnMaMJzyHa6_n=Ht+iKwtsSXWtw---BL7@mail.gmail.com>

Hi,

I get an error when trying to run wrf.exe using 2-way nesting. I run
real.exe successfully for 2-domains and get wrfbdy_d01, wrfinput_d01 and
wrfinput_d02 files. When I try to run thw model, the following messages
appear. Would someone give me some hints to correct the error?

Many thanks,

Mahally


[kudsy at cumulus em_real]$ ./wrf.exe
 Namelist dfi_control not found in namelist.input. Using registry defaults
for variables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variables in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval = 0 for all domains
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval and ending time to 0 for that domain.
 --- NOTE: grid_fdda is 0 for domain      2, setting gfdda interval and
ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      2,
setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      2, setting obs nudging
interval and ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      5
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1         120           1         139
  ims,ime,jms,jme           -4         125          -4         144
  ips,ipe,jps,jpe            1         120           1         139
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1 ,    314807212  bytes allocated
   med_initialdata_input: calling input_input
 INPUT LandUse = "USGS"
 LANDUSE TYPE = "USGS" FOUND          33  CATEGORIES           2  SEASONS
WATER CATEGORY =           16  SNOW CATEGORY =           24
  *************************************
  Nesting domain
  ids,ide,jds,jde            1         100           1         100
  ims,ime,jms,jme           -4         105          -4         105
  ips,ipe,jps,jpe            1         100           1         100
  INTERMEDIATE domain
  ids,ide,jds,jde          146         184          28          66
  ims,ime,jms,jme          141         189          23          71
  ips,ipe,jps,jpe          144         186          26          68
  *************************************
 d01 2010-10-02_00:00:00  alloc_space_field: domain            2 ,
197559732  bytes allocated
 d01 2010-10-02_00:00:00  alloc_space_field: domain            2 ,
7433496  bytes allocated
 d01 2010-10-02_00:00:00 *** Initializing nest domain # 2 from an input
file. ***
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:      67
  program wrf: error opening wrfinput_d02 for reading ierr=
-1010

-- 

Mahally Kudsy
Weather Modification Technology Center
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From drostkier at yahoo.com  Thu Jan  6 00:42:21 2011
From: drostkier at yahoo.com (Dorita Rostkier-Edelstein)
Date: Wed, 5 Jan 2011 23:42:21 -0800 (PST)
Subject: [Wrf-users] WRF-SCM drive with 3D-WRF
Message-ID: <441606.15646.qm@web113101.mail.gq1.yahoo.com>

Hi users,

I would like to know if any of you have initialized and driven the WRF-SCM with 
WRF output?

Thanks,

Dorita
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From agnes.mika at bmtargoss.com  Thu Jan  6 00:42:33 2011
From: agnes.mika at bmtargoss.com (Agnes Mika)
Date: Thu, 6 Jan 2011 08:42:33 +0100
Subject: [Wrf-users] Error in two-way nesting
In-Reply-To: <AANLkTinzt9-NnMaMJzyHa6_n=Ht+iKwtsSXWtw---BL7@mail.gmail.com>
References: <AANLkTinzt9-NnMaMJzyHa6_n=Ht+iKwtsSXWtw---BL7@mail.gmail.com>
Message-ID: <20110106074233.GA2241@aggedor.argoss.nl>

Hallo,

Please post your namelist.input file as well. There is an error
reading your wrfinput_d02 files, it might have to do with a wrong
setting in your namelist.

Agnes

M Kudsy wrote:
> Hi,
> 
> I get an error when trying to run wrf.exe using 2-way nesting. I run
> real.exe successfully for 2-domains and get wrfbdy_d01, wrfinput_d01 and
> wrfinput_d02 files. When I try to run thw model, the following messages
> appear. Would someone give me some hints to correct the error?
> 
> Many thanks,
> 
> Mahally
> 
> 
> [kudsy at cumulus em_real]$ ./wrf.exe
>  Namelist dfi_control not found in namelist.input. Using registry defaults
> for variables in dfi_control
>  Namelist tc not found in namelist.input. Using registry defaults for
> variables in tc
>  Namelist scm not found in namelist.input. Using registry defaults for
> variables in scm
>  Namelist fire not found in namelist.input. Using registry defaults for
> variables in fire
>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
> auxinput4_interval = 0 for all domains
>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
> auxinput4_interval = 0 for all domains
>  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
> ending time to 0 for that domain.
>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
> setting sgfdda interval and ending time to 0 for that domain.
>  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
> interval and ending time to 0 for that domain.
>  --- NOTE: grid_fdda is 0 for domain      2, setting gfdda interval and
> ending time to 0 for that domain.
>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      2,
> setting sgfdda interval and ending time to 0 for that domain.
>  --- NOTE: obs_nudge_opt is 0 for domain      2, setting obs nudging
> interval and ending time to 0 for that domain.
>  --- NOTE: num_soil_layers has been set to      5
>  WRF V3.2.1 MODEL
>   *************************************
>   Parent domain
>   ids,ide,jds,jde            1         120           1         139
>   ims,ime,jms,jme           -4         125          -4         144
>   ips,ipe,jps,jpe            1         120           1         139
>   *************************************
>  DYNAMICS OPTION: Eulerian Mass Coordinate
>     alloc_space_field: domain            1 ,    314807212  bytes allocated
>    med_initialdata_input: calling input_input
>  INPUT LandUse = "USGS"
>  LANDUSE TYPE = "USGS" FOUND          33  CATEGORIES           2  SEASONS
> WATER CATEGORY =           16  SNOW CATEGORY =           24
>   *************************************
>   Nesting domain
>   ids,ide,jds,jde            1         100           1         100
>   ims,ime,jms,jme           -4         105          -4         105
>   ips,ipe,jps,jpe            1         100           1         100
>   INTERMEDIATE domain
>   ids,ide,jds,jde          146         184          28          66
>   ims,ime,jms,jme          141         189          23          71
>   ips,ipe,jps,jpe          144         186          26          68
>   *************************************
>  d01 2010-10-02_00:00:00  alloc_space_field: domain            2 ,
> 197559732  bytes allocated
>  d01 2010-10-02_00:00:00  alloc_space_field: domain            2 ,
> 7433496  bytes allocated
>  d01 2010-10-02_00:00:00 *** Initializing nest domain # 2 from an input
> file. ***
>  -------------- FATAL CALLED ---------------
>  FATAL CALLED FROM FILE:  <stdin>  LINE:      67
>   program wrf: error opening wrfinput_d02 for reading ierr=
> -1010
> 
> -- 
> 
> Mahally Kudsy
> Weather Modification Technology Center
> Agency for the Assessment and Application of Technology
> Jln MH Thamrin 8, Jakarta, Indonesia
> Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com

> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

--
Dr. ?gnes Mika
Advisor, Meteorology and Air Quality

Tel:    +31 (0)527-242299
Fax:    +31 (0)527-242016
Web:    www.bmtargoss.com

BMT ARGOSS
P.O. Box 61, 8325 ZH Vollenhove
Voorsterweg 28, 8316 PT Marknesse
The Netherlands

Confidentiality Notice & Disclaimer

The contents of this e-mail and any attachments are intended for the
use of the mail addressee(s) shown. If you are not that person, you
are not allowed to take any action based upon it or to copy it,
forward, distribute or disclose its contents and you should delete it
from your system. BMT ARGOSS does not accept liability for any errors
or omissions in the context of this e-mail or its attachments which
arise as a result of internet transmission, nor accept liability for
statements which are those of the author and clearly not made on
behalf of BMT ARGOSS.



From mkudsy at gmail.com  Thu Jan  6 01:15:19 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Thu, 6 Jan 2011 15:15:19 +0700
Subject: [Wrf-users] Error in two-way nesting
In-Reply-To: <20110106074233.GA2241@aggedor.argoss.nl>
References: <AANLkTinzt9-NnMaMJzyHa6_n=Ht+iKwtsSXWtw---BL7@mail.gmail.com>
	<20110106074233.GA2241@aggedor.argoss.nl>
Message-ID: <AANLkTikyhL+EGWT5-mC0-42n+9mH9KomTid9GutFQuia@mail.gmail.com>

Dear all,

Thanks for the answers.

I just realized that I made different settings of I and J_PARENT_START in
WPS and wrf namelists for the second domains.

Mahally



On Thu, Jan 6, 2011 at 2:42 PM, Agnes Mika <agnes.mika at bmtargoss.com> wrote:

> Hallo,
>
> Please post your namelist.input file as well. There is an error
> reading your wrfinput_d02 files, it might have to do with a wrong
> setting in your namelist.
>
> Agnes
>
> M Kudsy wrote:
> > Hi,
> >
> > I get an error when trying to run wrf.exe using 2-way nesting. I run
> > real.exe successfully for 2-domains and get wrfbdy_d01, wrfinput_d01 and
> > wrfinput_d02 files. When I try to run thw model, the following messages
> > appear. Would someone give me some hints to correct the error?
> >
> > Many thanks,
> >
> > Mahally
> >
> >
> > [kudsy at cumulus em_real]$ ./wrf.exe
> >  Namelist dfi_control not found in namelist.input. Using registry
> defaults
> > for variables in dfi_control
> >  Namelist tc not found in namelist.input. Using registry defaults for
> > variables in tc
> >  Namelist scm not found in namelist.input. Using registry defaults for
> > variables in scm
> >  Namelist fire not found in namelist.input. Using registry defaults for
> > variables in fire
> >  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
> > auxinput4_interval = 0 for all domains
> >  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
> > auxinput4_interval = 0 for all domains
> >  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
> > ending time to 0 for that domain.
> >  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
> > setting sgfdda interval and ending time to 0 for that domain.
> >  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
> > interval and ending time to 0 for that domain.
> >  --- NOTE: grid_fdda is 0 for domain      2, setting gfdda interval and
> > ending time to 0 for that domain.
> >  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      2,
> > setting sgfdda interval and ending time to 0 for that domain.
> >  --- NOTE: obs_nudge_opt is 0 for domain      2, setting obs nudging
> > interval and ending time to 0 for that domain.
> >  --- NOTE: num_soil_layers has been set to      5
> >  WRF V3.2.1 MODEL
> >   *************************************
> >   Parent domain
> >   ids,ide,jds,jde            1         120           1         139
> >   ims,ime,jms,jme           -4         125          -4         144
> >   ips,ipe,jps,jpe            1         120           1         139
> >   *************************************
> >  DYNAMICS OPTION: Eulerian Mass Coordinate
> >     alloc_space_field: domain            1 ,    314807212  bytes
> allocated
> >    med_initialdata_input: calling input_input
> >  INPUT LandUse = "USGS"
> >  LANDUSE TYPE = "USGS" FOUND          33  CATEGORIES           2  SEASONS
> > WATER CATEGORY =           16  SNOW CATEGORY =           24
> >   *************************************
> >   Nesting domain
> >   ids,ide,jds,jde            1         100           1         100
> >   ims,ime,jms,jme           -4         105          -4         105
> >   ips,ipe,jps,jpe            1         100           1         100
> >   INTERMEDIATE domain
> >   ids,ide,jds,jde          146         184          28          66
> >   ims,ime,jms,jme          141         189          23          71
> >   ips,ipe,jps,jpe          144         186          26          68
> >   *************************************
> >  d01 2010-10-02_00:00:00  alloc_space_field: domain            2 ,
> > 197559732  bytes allocated
> >  d01 2010-10-02_00:00:00  alloc_space_field: domain            2 ,
> > 7433496  bytes allocated
> >  d01 2010-10-02_00:00:00 *** Initializing nest domain # 2 from an input
> > file. ***
> >  -------------- FATAL CALLED ---------------
> >  FATAL CALLED FROM FILE:  <stdin>  LINE:      67
> >   program wrf: error opening wrfinput_d02 for reading ierr=
> > -1010
> >
> > --
> >
> > Mahally Kudsy
> > Weather Modification Technology Center
> > Agency for the Assessment and Application of Technology
> > Jln MH Thamrin 8, Jakarta, Indonesia
> > Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
>
> > _______________________________________________
> > Wrf-users mailing list
> > Wrf-users at ucar.edu
> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
> --
> Dr. ?gnes Mika
> Advisor, Meteorology and Air Quality
>
> Tel:    +31 (0)527-242299
> Fax:    +31 (0)527-242016
> Web:    www.bmtargoss.com
>
> BMT ARGOSS
> P.O. Box 61, 8325 ZH Vollenhove
> Voorsterweg 28, 8316 PT Marknesse
> The Netherlands
>
> Confidentiality Notice & Disclaimer
>
> The contents of this e-mail and any attachments are intended for the
> use of the mail addressee(s) shown. If you are not that person, you
> are not allowed to take any action based upon it or to copy it,
> forward, distribute or disclose its contents and you should delete it
> from your system. BMT ARGOSS does not accept liability for any errors
> or omissions in the context of this e-mail or its attachments which
> arise as a result of internet transmission, nor accept liability for
> statements which are those of the author and clearly not made on
> behalf of BMT ARGOSS.
>
>
>


-- 
Dr.Mahally Kudsy
Weather Modification Technology Center
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From Matthew.Foster at noaa.gov  Fri Jan  7 06:00:01 2011
From: Matthew.Foster at noaa.gov (Matt Foster)
Date: Fri, 07 Jan 2011 07:00:01 -0600
Subject: [Wrf-users] Radiative transfer performance in DM+SM run
Message-ID: <4D270E51.6030005@noaa.gov>

During some recent testing of a newly-configured domain (474x474, 3km) I 
noticed a rather significant difference in the performance of the 
radiative transfer (RRTM/Dudhia) when running a DM+SM build.  The 
radiative transfer timesteps are sometimes as much as 60% longer in 
DM+SM vs DM.  I've found this to be true with either OpenMPI or 
MVAPICH2, although it seems to be more pronounced with MVAPICH2.

Does anyone know why I'm seeing this behavior?

Matt

-- 
Do not go where the path may lead; go instead where there is no path and leave a trail.
-- Ralph Waldo Emerson

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From jagan at tnau.ac.in  Mon Jan 10 07:07:35 2011
From: jagan at tnau.ac.in (jagan TNAU)
Date: Mon, 10 Jan 2011 19:37:35 +0530
Subject: [Wrf-users] ARWpost processing problems
Message-ID: <AANLkTin1dBQH_onHj5KHdwoNOxGw7itZFddus9gfBnUD@mail.gmail.com>

Dear Users,

I have  hyperslabbed a wrf-arw output for the variables RAINC and RAINNC
using NCO and trying to post process with ARWpost. However, I received the
following error while running ARWpost.exe.
-----------------------------------------
FOUND the following input files:
 ./rain.nc

START PROCESSING DATA
ERROR: Error in ext_pkg_open_for_read
---------------------------------------------

I have compiled the ARWpost by modifying gridinfo_module.F90 to read the
'basic' variables  RAINC and RAINNC. When the original file with all the
variables was post processed it was successful. I request users help to
overcome this issue.

-- 
With regards

Dr.R.Jagannathan
Professor of Agronomy,
Department of Agronomy
Tamil Nadu Agricultural University,
Coimbatore - 641 003 India

PHONE:  Mob: +91 94438 89891

DO NOT PRINT THIS E-MAIL UNLESS NECESSARY. THE ENVIRONMENT CONCERNS US ALL.
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From jcadam at wsu.edu  Mon Jan 10 09:17:51 2011
From: jcadam at wsu.edu (Adam, Jennifer C)
Date: Mon, 10 Jan 2011 08:17:51 -0800
Subject: [Wrf-users] Earth Systems Modeling Postdoctoral Opportunity at
	Washington State University
Message-ID: <1A8BF21ABC97FE4DB7F2E89E18AFED350151481E@EXCHANGEVS-04.ad.wsu.edu>

Position Announcement

 

Post-doctoral Research Position

Center for Environmental Research, Education, and Outreach

Washington State University

Pullman, WA 99164-1030

 

The Center for Environmental Research, Education and Outreach (CEREO) at
Washington State University (WSU) invites applications for a
post-doctoral research appointment to participate in a large
multi-institutional interdisciplinary effort to develop a
biosphere-relevant earth systems model (Bio-EaSM). This Bio-EaSM will be
developed to enable investigation of land-atmosphere interactions among
carbon, nitrogen, and water under decadal-scale climate variability.
Components of the model include the Weather Research and Forecast (WRF)
model, the Community Multi-scale Air Quality (CMAQ) system, and the
Variable Infiltration Capacity (VIC) land surface model. The successful
candidate should have experience with the application and development of
modeling applications based upon one or more of these modeling systems
in a Linux environment. The selected candidate will also have
demonstrated strong written and oral communication skills. An earned
Ph.D. in a relevant science or engineering field is required before the
date of hire.

 

CEREO is a faculty-led initiative of which the premise is to make WSU's
outstanding environmental programs more than just the sum of the parts
through building synergism and creative collaboration among faculty
involved in environmentally-oriented activities
(http://www.cereo.wsu.edu/index.html). The candidate will also work
directly with researchers at the Laboratory for Atmospheric Research
(LAR) and in the Water Resource group in Civil and Environmental
Engineering. LAR is an air quality research group with a strong
reputation for instrument development and field observations of
atmospheric chemistry and in numerical modeling of regional atmospheric
chemistry and air quality (http://www.lar.wsu.edu
<http://www.lar.wsu.edu> ). This effort is also closely linked to an NSF
IGERT on nitrogen cycling (http://igert.nspire.wsu.edu/).

 

Screening of applications will begin on February 1, 2011 and will
continue until the position is filled. Candidates should submit (via
e-mail) a letter of application which addresses all of the above
requirements and describes your research interests, curriculum vitae,
and names and addresses of five references to the following individuals:

 

Drs. Brian Lamb and Jennifer Adam 

blamb at wsu.edu and jcadam at wsu.edu

ATTN: Post-doctoral Search

Department of Civil and Environmental Engineering

Washington State University

PO Box 642910

Pullman, WA 99164-2910

 

WSU is an EEO employer. Protected group members are encouraged to apply.

 

 

 

 

Jennifer C. Adam, Assistant Professor

Civil and Environmental Engineering, Washington State University

Pullman, WA 99164-2910

Phone: 509-335-7751

Fax: 509-335-7632

jcadam at wsu.edu

http://www.ce.wsu.edu/Faculty_Staff/Profiles/adam.htm

http://hydro.cee.wsu.edu/

 

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From kganbour at yahoo.com  Sun Jan  9 04:06:28 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Sun, 9 Jan 2011 03:06:28 -0800 (PST)
Subject: [Wrf-users]  failure to get *.exe files
Message-ID: <995774.58345.qm@web46309.mail.sp1.yahoo.com>


?Dear? All:


I have tried to complie WRF on 32 bit machine with Linux open suse with GNU compiler
Linux linux-vfrh 2.6.31.5-0.1-default #1 SMP 2009-10-26 15:49:03 +0100 i686 i686 i386 GNU/Linux and with PGI Workstation 10.0 and with netcdf 4.1.1.
But I haven't get .exe files after the compilation until now .and? I tried with WRFV3.2.1?? and netcdf4.1.1 and way
And I am going to attend next workshop in colorado on 31 Junary and I would like to go there and I have run WRF Model.

I would like to know the meaning of next message after ./compile command
khaled1 at linux-vfrh:~/WRFV3.2> ./compile
?? compile [-d] [-j n] wrf?? compile wrf in run dir (NOTE: no real.exe, ndown.exe, or ideal.exe
 generated)

I compiled wit em_real&nmm_real with log files in attached files and aslo I attached the result of the compilation which displayed on the screen and the list files of main directory after compilation.

I hope to help me


Best regards

Khaled


      


      


      
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From moudipascal at yahoo.fr  Fri Jan  7 11:06:51 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Fri, 7 Jan 2011 18:06:51 +0000 (GMT)
Subject: [Wrf-users] Gen_be
Message-ID: <790359.47596.qm@web25106.mail.ukl.yahoo.com>

Hi to all and Happy New Year.
I would like to generate be.dat file for my own region. I get the forecasts for 
the month of June initialized at OOOOUTC. I generate the forecasts every 3 
hours.
May someone help me to generate the be.dat file please?
I am having the following error when i tried to test my data for 1 day with the 
interval of 12

Run Stage 0: Calculate ensemble perturbations from model forecasts.
---------------------------------------------------------------                                                                                               
 
Beginning CPU time: Fri Jan  7 19:06:06 WAT 
2011                                                                                                              
 
gen_be_stage0_wrf: Calculating standard perturbation fields valid at time  
2010060100                                                                         
 
mv: cannot stat `pert.2010060100*': No such file or 
directory                                                                                                 
 
2010053100 
/home/wrfvar/WRF/WRFV3/run/BE//2010053100/wrfout_d01_2010-06-01_00:00:00 
/home/wrfvar/WRF/WRFV3/run/BE//2010053112/wrfout_d01_2010-06-01_00:00:00   

gen_be_stage0_wrf: Calculating standard perturbation fields valid at time  
2010060112                                                                         
 
mv: cannot stat `pert.2010060112*': No such file or 
directory                                                                                                 
 
2010053112 
/home/wrfvar/WRF/WRFV3/run/BE//2010053112/wrfout_d01_2010-06-01_12:00:00 
/home/wrfvar/WRF/WRFV3/run/BE//2010060100/wrfout_d01_2010-06-01_12:00:00   

gen_be_stage0_wrf: Calculating standard perturbation fields valid at time  
2010060200                                                                         
 
mv: cannot stat `pert.2010060200*': No such file or directory
2010060100 
/home/wrfvar/WRF/WRFV3/run/BE//2010060100/wrfout_d01_2010-06-02_00:00:00 
/home/wrfvar/WRF/WRFV3/run/BE//2010060112/wrfout_d01_2010-06-02_00:00:00
Ending CPU time: Fri Jan  7 19:06:07 WAT 2011
---------------------------------------------------------------
Run Stage 1: Read standard fields, and remove time/ensemble/area mean.
---------------------------------------------------------------
Beginning CPU time: Fri Jan  7 19:06:07 WAT 2011
Stage 1 failed with error 24



 Pascal MOUDI IGRI

Ph-D Student at the 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52



      
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From wxprofessor at gmail.com  Sat Jan  8 20:31:40 2011
From: wxprofessor at gmail.com (patrick)
Date: Sat, 08 Jan 2011 22:31:40 -0500
Subject: [Wrf-users] wrf3.2
Message-ID: <4D292C1C.3020008@gmail.com>


real.exe failure on debian lenny system

uname -a
Linux 2.6.26-2-686 #1 SMP Thu Sep 16 19:35:51 UTC 2010 i686 GNU/Linux

any advice would be appreciated

it appears that " ./real.exe: free(): invalid next size (fast): 
0x109b8980 ***" is the issue.

cheers,

--patrick

output below:

2850-01:WRFV3/run# ./real.exe
  Namelist dfi_control not found in namelist.input. Using registry 
defaults for variables in dfi_control
  Namelist tc not found in namelist.input. Using registry defaults for 
variables in tc
  Namelist scm not found in namelist.input. Using registry defaults for 
variables in scm
  Namelist fire not found in namelist.input. Using registry defaults for 
variables in fire
  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and 
auxinput4_interval = 0 for all domains
  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and 
ending time to 0 for that domain.
  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      
1, setting sgfdda interval and ending time to 0 for that domain.
  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging 
interval and ending time to 0 for that domain.
  --- NOTE: num_soil_layers has been set to      4
  REAL_EM V3.2.1 PREPROCESSOR
   *************************************
   Parent domain
   ids,ide,jds,jde            1          74           1          61
   ims,ime,jms,jme           -4          79          -4          66
   ips,ipe,jps,jpe            1          74           1          61
   *************************************
  DYNAMICS OPTION: Eulerian Mass Coordinate
     alloc_space_field: domain            1 ,    110361480  bytes allocated
Time period #   1 to process = 2011-01-07_22:00:00.
Time period #   2 to process = 2011-01-07_22:06:00.
Time period #   3 to process = 2011-01-07_22:12:00.
Time period #   4 to process = 2011-01-07_22:18:00.
Time period #   5 to process = 2011-01-07_22:24:00.
Time period #   6 to process = 2011-01-07_22:30:00.
Time period #   7 to process = 2011-01-07_22:36:00.
Time period #   8 to process = 2011-01-07_22:42:00.
Time period #   9 to process = 2011-01-07_22:48:00.
Time period #  10 to process = 2011-01-07_22:54:00.
Time period #  11 to process = 2011-01-07_23:00:00.
Total analysis times to input =   11.

  -----------------------------------------------------------------------------

  Domain  1: Current date being processed: 2011-01-07_22:00:00.0000, 
which is loop #   1 out of   11
  configflags%julyr, %julday, %gmt:        2011           7   22.000000
  metgrid input_wrf.F first_date_input = 2011-01-07_22:00:00
   metgrid input_wrf.F first_date_nml = 2011-01-07_22:00:00
  d01 2011-01-07_22:00:00 Timing for input          0 s.
  d01 2011-01-07_22:00:00          flag_soil_levels read from met_em 
file is  1
  Max map factor in domain 1 =  0.98. Scale the dt in the model accordingly.
  Converged znw(kte) should be about 0.0 =   3.89766930E-09
  d01 2011-01-07_22:00:00 Old data, no inland lake information
   Assume RUC LSM 6-level input
*** glibc detected *** ./real.exe: free(): invalid next size (fast): 
0x109b8980 ***
======= Backtrace: =========
/lib/i686/cmov/libc.so.6[0xb75c6764]
/lib/i686/cmov/libc.so.6(cfree+0x96)[0xb75c8966]
./real.exe[0x84c8c9c]
./real.exe[0x84d5314]
./real.exe[0x8086978]
./real.exe[0x808f86f]
./real.exe[0x8053e9a]
./real.exe[0x80550ac]
./real.exe[0x8dbc159]
/lib/i686/cmov/libc.so.6(__libc_start_main+0xe5)[0xb756e455]
./real.exe[0x804aa11]
======= Memory map: ========
08048000-08eaa000 r-xp 00000000 08:01 4169734    
/home/ldm/WRFV3/main/real.exe
08eaa000-09a34000 rw-p 00e62000 08:01 4169734    
/home/ldm/WRFV3/main/real.exe
09a34000-0dfb0000 rw-p 09a34000 00:00 0
0fd59000-10ae0000 rw-p 0fd59000 00:00 0          [heap]
b0400000-b0421000 rw-p b0400000 00:00 0
b0421000-b0500000 ---p b0421000 00:00 0
b05d3000-b7558000 rw-p b05d3000 00:00 0
b7558000-b76ad000 r-xp 00000000 08:01 5529966    /lib/i686/cmov/libc-2.7.so
b76ad000-b76ae000 r--p 00155000 08:01 5529966    /lib/i686/cmov/libc-2.7.so
b76ae000-b76b0000 rw-p 00156000 08:01 5529966    /lib/i686/cmov/libc-2.7.so
b76b0000-b76b3000 rw-p b76b0000 00:00 0
b76b3000-b76bf000 r-xp 00000000 08:01 5529603    /lib/libgcc_s.so.1
b76bf000-b76c0000 rw-p 0000b000 08:01 5529603    /lib/libgcc_s.so.1
b76c0000-b76c1000 rw-p b76c0000 00:00 0
b76c1000-b76e5000 r-xp 00000000 08:01 5529619    /lib/i686/cmov/libm-2.7.so
b76e5000-b76e7000 rw-p 00023000 08:01 5529619    /lib/i686/cmov/libm-2.7.so
b76e7000-b7797000 r-xp 00000000 08:01 548076     
/usr/lib/libgfortran.so.3.0.0
b7797000-b7798000 rw-p 000af000 08:01 548076     
/usr/lib/libgfortran.so.3.0.0
b7798000-b7799000 rw-p b7798000 00:00 0
b77a2000-b77a4000 rw-p b77a2000 00:00 0
b77a4000-b77a5000 r-xp b77a4000 00:00 0          [vdso]
b77a5000-b77bf000 r-xp 00000000 08:01 5529939    /lib/ld-2.7.so
b77bf000-b77c1000 rw-p 0001a000 08:01 5529939    /lib/ld-2.7.so
bfe20000-bfe3d000 rw-p bffe2000 00:00 0          [stack]
Aborted


From wxprofessor at gmail.com  Mon Jan 10 11:51:36 2011
From: wxprofessor at gmail.com (patrick)
Date: Mon, 10 Jan 2011 13:51:36 -0500
Subject: [Wrf-users] real.exe
In-Reply-To: <790359.47596.qm@web25106.mail.ukl.yahoo.com>
References: <790359.47596.qm@web25106.mail.ukl.yahoo.com>
Message-ID: <4D2B5538.1080504@gmail.com>


real.exe chokes with the following error:
" ./real.exe: free(): invalid next size (fast): 0x109b8980 ***

wrfv3.2 gfortran serial debian lenny

uname -a
Linux 2.6.26-2-686 #1 SMP Thu Sep 16 19:35:51 UTC 2010 i686 GNU/Linux

help please :)

cheers,

--patrick


From yesubabu2006 at gmail.com  Mon Jan 10 21:56:06 2011
From: yesubabu2006 at gmail.com (V.YesuBabu)
Date: Tue, 11 Jan 2011 10:26:06 +0530
Subject: [Wrf-users] "Re: Contents of Wrf-users digest...Vol 77, Issue 5"
Message-ID: <AANLkTi=M58kOaWu6K4vWcajdw7ORT3ynw8QKrbZ1ugue@mail.gmail.com>

Dear Moudi Pascal,
wrf forecasts for one month experiments should be in 12hrs  output interval
i.e., If you are generating be.dat file for Nov 2010 month then it will be
output for gen_be directory as follows
2010110100/wrfout_d01_2010-11-01_00:00:00
2010110100/wrfout_d01_2010-11-01_12:00:00
2010110100/wrfout_d01_2010-11-02_00:00:00
2010110112/wrfout_d01_2010-11-01_12:00:00
2010110112/wrfout_d01_2010-11-02_00:00:00
2010110112/wrfout_d01_2010-11-02_12:00:00
2010110200/wrfout_d01_2010-11-02_00:00:00
2010110200/wrfout_d01_2010-11-02_12:00:00
2010110200/wrfout_d01_2010-11-03_00:00:00
2010110212/wrfout_d01_2010-11-02_12:00:00
2010110212/wrfout_d01_2010-11-03_00:00:00
2010110212/wrfout_d01_2010-11-03_00:00:00
---------------------------------------------------------
---------------------------------------------------------
2010112900/wrfout_d01_2010-11-29_00:00:00
2010112900/wrfout_d01_2010-11-29_12:00:00
2010112900/wrfout_d01_2010-11-30_00:00:00


in WRFV32 namelist change your namelist.input  following option
&time_control
history_interval                    = 720,  60,   60,
frames_per_outfile                  = 1, 1, 1000,


V  Yesubabu,
Project Engineer,CAS/SECG,
C-DAC,Main Building,
Pune University,Pune,India.
Phone :020-25704226



On 11 January 2011 00:30, <wrf-users-request at ucar.edu> wrote:

> Send Wrf-users mailing list submissions to
>        wrf-users at ucar.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
>        http://mailman.ucar.edu/mailman/listinfo/wrf-users
> or, via email, send a message with subject or body 'help' to
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>
> You can reach the person managing the list at
>        wrf-users-owner at ucar.edu
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Wrf-users digest..."
>
>
> Today's Topics:
>
>   1. Gen_be (moudi pascal)
>   2. wrf3.2 (patrick)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 7 Jan 2011 18:06:51 +0000 (GMT)
> From: moudi pascal <moudipascal at yahoo.fr>
> Subject: [Wrf-users] Gen_be
> To: WRF User's <wrf-users at ucar.edu>, WRF DA <wrfhelp at ucar.edu>,
>        wrf_users at ucar.edu
> Message-ID: <790359.47596.qm at web25106.mail.ukl.yahoo.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi to all and Happy New Year.
> I would like to generate be.dat file for my own region. I get the forecasts
> for
> the month of June initialized at OOOOUTC. I generate the forecasts every 3
> hours.
> May someone help me to generate the be.dat file please?
> I am having the following error when i tried to test my data for 1 day with
> the
> interval of 12
>
> Run Stage 0: Calculate ensemble perturbations from model forecasts.
> ---------------------------------------------------------------
>
> Beginning CPU time: Fri Jan  7 19:06:06 WAT
> 2011
>
> gen_be_stage0_wrf: Calculating standard perturbation fields valid at time
> 2010060100
>
> mv: cannot stat `pert.2010060100*': No such file or
> directory
>
> 2010053100
> /home/wrfvar/WRF/WRFV3/run/BE//2010053100/wrfout_d01_2010-06-01_00:00:00
> /home/wrfvar/WRF/WRFV3/run/BE//2010053112/wrfout_d01_2010-06-01_00:00:00
>
> gen_be_stage0_wrf: Calculating standard perturbation fields valid at time
> 2010060112
>
> mv: cannot stat `pert.2010060112*': No such file or
> directory
>
> 2010053112
> /home/wrfvar/WRF/WRFV3/run/BE//2010053112/wrfout_d01_2010-06-01_12:00:00
> /home/wrfvar/WRF/WRFV3/run/BE//2010060100/wrfout_d01_2010-06-01_12:00:00
>
> gen_be_stage0_wrf: Calculating standard perturbation fields valid at time
> 2010060200
>
> mv: cannot stat `pert.2010060200*': No such file or directory
> 2010060100
> /home/wrfvar/WRF/WRFV3/run/BE//2010060100/wrfout_d01_2010-06-02_00:00:00
> /home/wrfvar/WRF/WRFV3/run/BE//2010060112/wrfout_d01_2010-06-02_00:00:00
> Ending CPU time: Fri Jan  7 19:06:07 WAT 2011
> ---------------------------------------------------------------
> Run Stage 1: Read standard fields, and remove time/ensemble/area mean.
> ---------------------------------------------------------------
> Beginning CPU time: Fri Jan  7 19:06:07 WAT 2011
> Stage 1 failed with error 24
>
>
>
>  Pascal MOUDI IGRI
>
> Ph-D Student at the
> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
> Faculty of Science
> University of Yaounde I, Cameroon
> National Advanced Training School for Technical Education,
> Electricity Engineering, Douala
>
> Tel:+237 75 32 58 52
>
>
>
>
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL:
> http://mailman.ucar.edu/pipermail/wrf-users/attachments/20110107/a25467a7/attachment-0001.html
>
> ------------------------------
>
> Message: 2
> Date: Sat, 08 Jan 2011 22:31:40 -0500
> From: patrick <wxprofessor at gmail.com>
> Subject: [Wrf-users] wrf3.2
> To: wrf-users at ucar.edu
> Message-ID: <4D292C1C.3020008 at gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
>
> real.exe failure on debian lenny system
>
> uname -a
> Linux 2.6.26-2-686 #1 SMP Thu Sep 16 19:35:51 UTC 2010 i686 GNU/Linux
>
> any advice would be appreciated
>
> it appears that " ./real.exe: free(): invalid next size (fast):
> 0x109b8980 ***" is the issue.
>
> cheers,
>
> --patrick
>
> output below:
>
> 2850-01:WRFV3/run# ./real.exe
>  Namelist dfi_control not found in namelist.input. Using registry
> defaults for variables in dfi_control
>  Namelist tc not found in namelist.input. Using registry defaults for
> variables in tc
>  Namelist scm not found in namelist.input. Using registry defaults for
> variables in scm
>  Namelist fire not found in namelist.input. Using registry defaults for
> variables in fire
>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
> auxinput4_interval = 0 for all domains
>  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
> ending time to 0 for that domain.
>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain
> 1, setting sgfdda interval and ending time to 0 for that domain.
>  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
> interval and ending time to 0 for that domain.
>  --- NOTE: num_soil_layers has been set to      4
>  REAL_EM V3.2.1 PREPROCESSOR
>   *************************************
>   Parent domain
>   ids,ide,jds,jde            1          74           1          61
>   ims,ime,jms,jme           -4          79          -4          66
>   ips,ipe,jps,jpe            1          74           1          61
>   *************************************
>  DYNAMICS OPTION: Eulerian Mass Coordinate
>     alloc_space_field: domain            1 ,    110361480  bytes allocated
> Time period #   1 to process = 2011-01-07_22:00:00.
> Time period #   2 to process = 2011-01-07_22:06:00.
> Time period #   3 to process = 2011-01-07_22:12:00.
> Time period #   4 to process = 2011-01-07_22:18:00.
> Time period #   5 to process = 2011-01-07_22:24:00.
> Time period #   6 to process = 2011-01-07_22:30:00.
> Time period #   7 to process = 2011-01-07_22:36:00.
> Time period #   8 to process = 2011-01-07_22:42:00.
> Time period #   9 to process = 2011-01-07_22:48:00.
> Time period #  10 to process = 2011-01-07_22:54:00.
> Time period #  11 to process = 2011-01-07_23:00:00.
> Total analysis times to input =   11.
>
>
>  -----------------------------------------------------------------------------
>
>  Domain  1: Current date being processed: 2011-01-07_22:00:00.0000,
> which is loop #   1 out of   11
>  configflags%julyr, %julday, %gmt:        2011           7   22.000000
>  metgrid input_wrf.F first_date_input = 2011-01-07_22:00:00
>   metgrid input_wrf.F first_date_nml = 2011-01-07_22:00:00
>  d01 2011-01-07_22:00:00 Timing for input          0 s.
>  d01 2011-01-07_22:00:00          flag_soil_levels read from met_em
> file is  1
>  Max map factor in domain 1 =  0.98. Scale the dt in the model accordingly.
>  Converged znw(kte) should be about 0.0 =   3.89766930E-09
>  d01 2011-01-07_22:00:00 Old data, no inland lake information
>   Assume RUC LSM 6-level input
> *** glibc detected *** ./real.exe: free(): invalid next size (fast):
> 0x109b8980 ***
> ======= Backtrace: =========
> /lib/i686/cmov/libc.so.6[0xb75c6764]
> /lib/i686/cmov/libc.so.6(cfree+0x96)[0xb75c8966]
> ./real.exe[0x84c8c9c]
> ./real.exe[0x84d5314]
> ./real.exe[0x8086978]
> ./real.exe[0x808f86f]
> ./real.exe[0x8053e9a]
> ./real.exe[0x80550ac]
> ./real.exe[0x8dbc159]
> /lib/i686/cmov/libc.so.6(__libc_start_main+0xe5)[0xb756e455]
> ./real.exe[0x804aa11]
> ======= Memory map: ========
> 08048000-08eaa000 r-xp 00000000 08:01 4169734
> /home/ldm/WRFV3/main/real.exe
> 08eaa000-09a34000 rw-p 00e62000 08:01 4169734
> /home/ldm/WRFV3/main/real.exe
> 09a34000-0dfb0000 rw-p 09a34000 00:00 0
> 0fd59000-10ae0000 rw-p 0fd59000 00:00 0          [heap]
> b0400000-b0421000 rw-p b0400000 00:00 0
> b0421000-b0500000 ---p b0421000 00:00 0
> b05d3000-b7558000 rw-p b05d3000 00:00 0
> b7558000-b76ad000 r-xp 00000000 08:01 5529966    /lib/i686/cmov/
> libc-2.7.so
> b76ad000-b76ae000 r--p 00155000 08:01 5529966    /lib/i686/cmov/
> libc-2.7.so
> b76ae000-b76b0000 rw-p 00156000 08:01 5529966    /lib/i686/cmov/
> libc-2.7.so
> b76b0000-b76b3000 rw-p b76b0000 00:00 0
> b76b3000-b76bf000 r-xp 00000000 08:01 5529603    /lib/libgcc_s.so.1
> b76bf000-b76c0000 rw-p 0000b000 08:01 5529603    /lib/libgcc_s.so.1
> b76c0000-b76c1000 rw-p b76c0000 00:00 0
> b76c1000-b76e5000 r-xp 00000000 08:01 5529619    /lib/i686/cmov/
> libm-2.7.so
> b76e5000-b76e7000 rw-p 00023000 08:01 5529619    /lib/i686/cmov/
> libm-2.7.so
> b76e7000-b7797000 r-xp 00000000 08:01 548076
> /usr/lib/libgfortran.so.3.0.0
> b7797000-b7798000 rw-p 000af000 08:01 548076
> /usr/lib/libgfortran.so.3.0.0
> b7798000-b7799000 rw-p b7798000 00:00 0
> b77a2000-b77a4000 rw-p b77a2000 00:00 0
> b77a4000-b77a5000 r-xp b77a4000 00:00 0          [vdso]
> b77a5000-b77bf000 r-xp 00000000 08:01 5529939    /lib/ld-2.7.so
> b77bf000-b77c1000 rw-p 0001a000 08:01 5529939    /lib/ld-2.7.so
> bfe20000-bfe3d000 rw-p bffe2000 00:00 0          [stack]
> Aborted
>
>
>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 77, Issue 5
> ****************************************
>



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From moudipascal at yahoo.fr  Wed Jan 12 06:10:20 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Wed, 12 Jan 2011 13:10:20 +0000 (GMT)
Subject: [Wrf-users] How to modify e_vert.
Message-ID: <984653.41310.qm@web25102.mail.ukl.yahoo.com>

Hi to all,
I want to modify e_vert when running wrf. But when i change it, it always 
remains to 27.
How to change it? is it in the namelist.wps ? when i put it there, the 
completion is unsuccessful.
I've remarqued that, when i run ncdump -c met_em*  :BOTTOM-TOP_GRID_DIMENSION = 
27.
How to change it from 27 to 41 for example?
Thank you

 Pascal MOUDI IGRI

Ph-D Student at the 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52



      
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From M.Collins at exeter.ac.uk  Fri Jan 14 09:12:51 2011
From: M.Collins at exeter.ac.uk (Collins, Matthew)
Date: Fri, 14 Jan 2011 16:12:51 +0000
Subject: [Wrf-users] Papers for IPCC AR5 Ch12 - Long term Climate Change
 Projections, Commitments and Irreversibility
Message-ID: <C7666AA7-220A-47D5-B0B9-A1A3039A0068@exeter.ac.uk>

Dear Colleagues,

We would like you to send us any papers you have submitted, in press or have recently published that are relevant for the forthcoming IPCC WG1 AR5 Chapter 12  "Long term Climate Change: Projections, Commitments and Irreversibility". An outline of the Chapter is included below. Please send all papers to reto.knutti at env.etchz.ch and he will arrange to hold them in a central place and pass them on to the relevant Lead Author.

Also, please do keep us up-to-date on the progress of papers and send revised versions via Reto. Papers need to be submitted by July 31 2012 and accepted by 15 March 2013 in order to be cited in the report. Note however that there is no guarantee that your paper will be cited even if you send it to us.

Please feel free to pass this message on to any of your colleagues we may have missed. Apologies if you get more than one copy.

Best wishes, IPCC WG1 AR5 Chapter 12 authors

Chapter 12 Outline
1    General introduction
	1.2.   Uncertainties in the chain from emissions to projections
2.   Projected changes in emissions, concentrations and radiative forcing
	2.1.   Description of scenarios
	2.2.   Implementation of scenarios and forcings in CMIP5
3.   Projected changes over the 21st century
	3.1.   Time-evolving global quantities
	3.2.   Changes in temperature and energy budget
	3.3.   Changes in the Water Cycle
	3.4.   Changes in Atmospheric Circulation
	3.5.   Pattern scaling 
	3.6.   Changes in high-latitude climate and cryosphere
	3.7.   Changes in the ocean
	3.8.   Consistency and main differences CMIP3/CMIP5 and SRES/RCP
	3.9.   Changes associated with biogeochemical feedbacks
4.   Global measures of climate sensitivity and transient response
	4.1.   Estimates based on climatology, ranges of CMIP5 and comparison to earlier CMIPs
	4.2.   Forcing and response, timescales of feedbacks 
5.   Long Term Climate Change, Commitment and Irreversibility 
	5.1.   RCP extensions 
	5.2.   Commitment
	5.3.   Climate stabilization 
	5.4.   Abrupt change and irreversibility 

From Chris.Franks at noaa.gov  Fri Jan 14 20:46:25 2011
From: Chris.Franks at noaa.gov (Chris Franks)
Date: Fri, 14 Jan 2011 21:46:25 -0600
Subject: [Wrf-users] WPP errors with sub hourly data
Message-ID: <4D311891.90904@noaa.gov>

Hi all,

I tried tweaking the minutes script but haven't been able to get it to 
run. I didn't actually compile WPP as I'm actually working off someone 
else's machine, but seems there weren't any compilation errors. So, 
looks like something wrong with my script (itag file looks off).

I've attached my script...do you see my problems here? Think my paths 
are right. Doesn't look like one needs to change much.

I'm testing it out on a small sample set of wrf output:

wrfout_d01_2010-06-17_18:00:00
wrfout_d01_2010-06-17_18:15:00
wrfout_d01_2010-06-17_18:30:00
wrfout_d01_2010-06-17_18:45:00
wrfout_d01_2010-06-17_19:00:00
wrfout_d01_2010-06-17_19:15:00
wrfout_d01_2010-06-17_19:30:00
wrfout_d01_2010-06-17_19:45:00

Thanks,
Chris
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From eric.kemp at nasa.gov  Fri Jan 14 11:25:08 2011
From: eric.kemp at nasa.gov (Kemp, Eric M. (GSFC-610.0)[NORTHROP GRUMMAN INFORMATION TECH])
Date: Fri, 14 Jan 2011 12:25:08 -0600
Subject: [Wrf-users] FW: DRAFT WRF 3.2.1 Bug Report
In-Reply-To: <C9531E1F.348F%Eric.Kemp@nasa.gov>
Message-ID: <C955FF34.34EB%Eric.Kemp@nasa.gov>


Dear wrfhelp:

I am experiencing problems running WRF3.2.1 on a case that works with WRF3.1.1.  Two grids are used:

 max_dom                             = 2,
 s_we                                = 1,     1,     1,
 e_we                                = 1200, 393, 400,
 s_sn                                = 1,     1,     1,
 e_sn                                = 800, 385, 400,
 s_vert                              = 1,     1,     1,
 e_vert                              = 35,    35,    35,
 num_metgrid_levels                  = 40
 dx                                  = 4000,  2000,  1000,
 dy                                  = 4000,  2000,  1000,

And the initial and lateral boundary conditions are provided by the NAM (00Z 10 April 2009 - 12Z 11 April 2009).

The WRF 3.1.1 runs this case without incident.  However, the WRF3.2.1 will either fail with this message:

FATAL CALLED FROM FILE:  <stdin>  LINE:   15172
 -------------- FATAL CALLED ---------------
 frame/module_domain.f: Failed to allocate grid%smois(sm31:em31,1:model_config_r
 ec%num_soil_layers,sm33:em33).

Or else 3.2.1 will *usually* run with random and immediate CFL errors if "too many" MPI processes are used (above 40).  In a handful of cases, however, the same executable will run without issue.

I've noticed that the 3.2.1 real.exe executable also experiences the memory allocation error.  Also, these problems occur regardless of whether WPS 3.1.1 or 3.2.1 is used to process the NAM data.

I'm running on a Linux distributed cluster, using 40 nodes with 2 dual-core Intel Woodcrest chips with 4 GB RAM per node.  The WRF is compiled with ifort 11.1.038 and Intel MPI 3.2.011.  I've experimented with other MPI implementations (Intel MPI 4.0.0.025 and MVAPICH2-1.4.1) and I see the same behavior.

I have sample namelist.input, wrfinput and wrfbdy files available for upload.

Thanks,

-Eric


--------------------------------------------------------------------
Eric M. Kemp                   Northrop Grumman Corporation
Meteorologist                  Information Systems
Civil Enterprise Solutions     Civil Systems Division

                               Goddard Space Flight Center
                               Mailstop 610.3
                               Greenbelt, MD 20771
                               Telephone   301-286-9768
                               Fax         301-286-1775
                               E-mail:     eric.kemp at nasa.gov
                               E-mail:     eric.kemp at ngc.com
--------------------------------------------------------------------



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From miguel at gw-frias.homeip.net  Wed Jan 19 05:45:55 2011
From: miguel at gw-frias.homeip.net (Miguel Frias)
Date: Wed, 19 Jan 2011 12:45:55 +0000
Subject: [Wrf-users] Question about GFS data retrieval
Message-ID: <4D36DD03.6050508@gw-frias.homeip.net>

Hello,

I don't know if this is the correct place to ask this but here it goes.

I'm trying to use GFS to get upper air winds at a specific altitude. I 
found out about the partial http transfer using curkl and then wgrib to 
get the data.

Now my question is:

I need to supply as variables the latitude, longitude, altitude and that 
I want wind direction and speed. As an example, I would need the winds 
at 38N020W at 33000ft (11000m or a specific pressure level) which would 
then give me, for instance, 274/38  (274 degrees wind direction and 38 
knots [or whatever metric used]).

I know that GFS has all this information, it's how to ask for it and how 
to properly decode it that I'm in doubt.

Finally, the information I want must be treated in raw. Don't want any 
images/graphs or the like.

What I'm using:
http://nomads.ncep.noaa.gov/txt_descriptions/fast_downloading_grib.shtml

However the above doesn't let me specify latitude, longitude or altitude.

Thanks for any help,
Miguel Frias

From preeti at csa.iisc.ernet.in  Tue Jan 18 23:23:58 2011
From: preeti at csa.iisc.ernet.in (Preeti)
Date: Wed, 19 Jan 2011 11:53:58 +0530
Subject: [Wrf-users] Compressing NetCDF
Message-ID: <AANLkTin2_QSAmU8MnmW_ob1JnkxNKp2XMmwzO5d0p0pG@mail.gmail.com>

Hello

Does anyone know of any better compression software other than
zlib/gzip for data formats like NetCDF ? I find that if the WRF output
NetCDF file has only few variables say Pressure P, Temperature T etc.
then gzip/zlib performs very poorly, namely the compression is from
892K (original) to only 742K (gzip-ed).

Thanks
Preeti

From nriemer at illinois.edu  Thu Jan 20 15:09:07 2011
From: nriemer at illinois.edu (Nicole Riemer)
Date: Thu, 20 Jan 2011 16:09:07 -0600
Subject: [Wrf-users] Postdoc position in Atmospheric Chemistry Modeling at
	UIUC
Message-ID: <20231C69-ECE3-4ED6-ADF6-21E1FC8D26F9@illinois.edu>

Department of Atmospheric Sciences at the University of Illinois at Urbana-Champaign invites applications for Postdoctoral Researcher Opportunity

One Postdoctoral Researcher position is open at the Department of Atmospheric Sciences at the University of Illinois at Urbana-Champaign, starting in May 2011. The successful candidate will work on developing a state-of-the-art regional model representation of nighttime chemistry building on existing model capabilities of the community model WRF/Chem. The NOAA-funded project involves improving the understanding of interaction of transport and chemistry during nighttime, quantifying the impact of nighttime chemistry for chlorine cycling, nitrate formation and ozone production, and validating the model with field observations from the CalNeX Campaign 2010.

The initial appointment is for one year with the possibility of renewal for two additional years based on performance and continuation of funding. The stipend depends on qualifications. The applicant must have a Ph.D. in atmospheric sciences or a related field, with experience in regional modeling of atmospheric chemistry. Advanced scientific programming skills are essential and previous experience with WRF/Chem is highly desirable.

To apply for this opportunity please email a cover letter, brief research statement, CV including publications list, and contact information for three persons willing to serve as references to Dr. Nicole Riemer at nriemer at illinois.edu. Screening of applications will begin on January 31 2011 and will continue until the position is filled.


Nicole Riemer
Assistant Professor
Department of Atmospheric Sciences
University of Illinois at Urbana-Champaign
105 S. Gregory
Urbana, IL 61801
phone: 217-244-2844
nriemer at illinois.edu
http://www.atmos.uiuc.edu/~nriemer







From bbrashers at Environcorp.com  Thu Jan 20 18:11:59 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Thu, 20 Jan 2011 17:11:59 -0800
Subject: [Wrf-users] Using high resolution snow data
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF30852061ED7BC@irvine01.irvine.environ.local>

I would like to supply WRF with snow data at higher spatial resolution
than in my initialization dataset (12km NAM) for my inner-most grids.
Has anyone used one of the MODIS products, e.g.
http://nsidc.org/data/myd10c1v5.html?  It comes in HDF format, which is
quasi-related to netCDF format.  Has anyone written an
HDF-to-intermediate converter that they're willing to share (maybe
called unhdf)? Or a netCDF-to-intermediate converter?

 

Or perhaps there's another data source for ~1km snow data that people
like?  Any advice would be appreciated.

 

Bart

bbrashers at environcorp.com

 



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From giselezepka at bol.com.br  Fri Jan 21 13:13:42 2011
From: giselezepka at bol.com.br (Gisele Zepka)
Date: Fri, 21 Jan 2011 18:13:42 -0200
Subject: [Wrf-users] precipitation ice mass
Message-ID: <4D39E8F6.5080703@bol.com.br>

Dear users,

I was very interested in one of the storm parameters that can be 
extracted from the WRF, however I was unable to get that variable from 
my simulations. I wonder if you could tell me how can I extract the 
"precipitation ice mass" from the model. My domain has a 3 km grid 
spacing and I am using the wrf_post from version 2.2 and ARWpost from 
version 3.1 to post-process my data.

Thanks!

All best,

Gisele

From kganbour at yahoo.com  Fri Jan 21 01:01:45 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Fri, 21 Jan 2011 00:01:45 -0800 (PST)
Subject: [Wrf-users]  How to get data for my domain
Message-ID: <718472.69699.qm@web46306.mail.sp1.yahoo.com>

Dear All:
I have compile WRF Model with real_em,and I have run it with? case which in the online tutorial "January 2000 Case".
I would like to run the model on my domain as example Libya area.
Please how can I get the Input data for my domain?


I am looking forward for your replay.

With best regards


Khaled



      
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From kganbour at yahoo.com  Fri Jan 21 01:03:01 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Fri, 21 Jan 2011 00:03:01 -0800 (PST)
Subject: [Wrf-users] wrf-users@ucar.edu
Message-ID: <732917.23414.qm@web46307.mail.sp1.yahoo.com>

Dear All:
I have compile WRF Model with real_em,and I have run it with? case which in the online tutorial "January 2000 Case".
I would like to run the model on my domain as example Libya area.
Please how can I get the Input data fro my domain?


I am looking forward for your replay.

With best regards


Khaled





      
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From kganbour at yahoo.com  Fri Jan 21 02:17:24 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Fri, 21 Jan 2011 01:17:24 -0800 (PST)
Subject: [Wrf-users] WRF Compile for many cases
Message-ID: <492106.24473.qm@web46302.mail.sp1.yahoo.com>

Dear All:
I have run ARW WRF model with em_real.
Can I compile with another case such Idealized cases or NMM WRF and keep the the first? compilation?

best regards


Khaled



      
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From kganbour at yahoo.com  Fri Jan 21 02:18:23 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Fri, 21 Jan 2011 01:18:23 -0800 (PST)
Subject: [Wrf-users] WRF Compile for many cases
Message-ID: <141918.29712.qm@web46303.mail.sp1.yahoo.com>

Dear All:
I have run ARW WRF model with em_real.
Can I compile with another case such Idealized cases or NMM WRF and keep the the first? compilation?

best regards


Khaled




      
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From totangjie at gmail.com  Thu Jan 20 23:29:44 2011
From: totangjie at gmail.com (Jie TANG)
Date: Fri, 21 Jan 2011 14:29:44 +0800
Subject: [Wrf-users] where can I find the detail introduction of IDEAL test
	of WRF?
Message-ID: <AANLkTikpdm3gW6rLD8jnZeYz1m+8kxA+ByL-epGC48g7@mail.gmail.com>

Hi ,wrf user group:
  Now I want to find some detail description of the numerical  scheme of the
ideal test given by WRF.
for example: em_quarter_ss,em_grav2d_x  em_hill2d_x .
 the readme of these ideal test is too simple and I can not get the detail.
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From FLiu at azmag.gov  Mon Jan 24 09:09:43 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Mon, 24 Jan 2011 16:09:43 +0000
Subject: [Wrf-users] WRF Compile for many cases
In-Reply-To: <492106.24473.qm@web46302.mail.sp1.yahoo.com>
References: <492106.24473.qm@web46302.mail.sp1.yahoo.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C029EA14D@mag9006>

Hi Khaled,
You may save all current executable files in another specific directory but not in ../main/, alternatively, you can change those executable file names if you still want to keep them in the directory of ../main when you do ./clean -a and compile with another case. You can invoke different *.exe files in different name or in different directory when you run different cases. Please keep in mind you may use different Registry for compiling with different case. Thanks.
Feng


From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Khaled Ganbour
Sent: Friday, January 21, 2011 2:17 AM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF Compile for many cases

Dear All:
I have run ARW WRF model with em_real.
Can I compile with another case such Idealized cases or NMM WRF and keep the the first  compilation?

best regards


Khaled


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From kganbour at yahoo.com  Mon Jan 24 09:18:24 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Mon, 24 Jan 2011 08:18:24 -0800 (PST)
Subject: [Wrf-users] [wrf-users]I couldn't run NCL
Message-ID: <729147.9049.qm@web46305.mail.sp1.yahoo.com>


Dear All

I have tried to install NCL program.but always I have errors,I attached the log file for installation if you can help me

I am looking forward for your replay.

With best regards








      


      
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From mkudsy at gmail.com  Sat Jan 22 20:58:47 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Sun, 23 Jan 2011 10:58:47 +0700
Subject: [Wrf-users] How to get data for my domain
In-Reply-To: <718472.69699.qm@web46306.mail.sp1.yahoo.com>
References: <718472.69699.qm@web46306.mail.sp1.yahoo.com>
Message-ID: <AANLkTimJtur6TjT2HZZbZf1Rjq93GfNbNy4y2FP4EuFk@mail.gmail.com>

You can get the input data from many sources, for example
from

ftp://ftpprd.ncep.noaa.gov/pub/data/nccf/com/gfs/prod
under its sub-dir there are daily global forecast products based from 00Z up
to several days in grin format

Other source of input can be obtained from pages indicated by
http://www.mmm.ucar.edu/wrf/users/download/free_data.html

Have a try.

Mahally

On Fri, Jan 21, 2011 at 3:01 PM, Khaled Ganbour <kganbour at yahoo.com> wrote:

> Dear All:
> I have compile WRF Model with real_em,and I have run it with  case which in
> the online tutorial "January 2000 Case".
> I would like to run the model on my domain as example Libya area.
> Please how can I get the Input data for my domain?
>
>
> I am looking forward for your replay.
>
> With best regards
>
>
> Khaled
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 
Dr.Mahally Kudsy
Weather Modification Technology Center
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From mkudsy at gmail.com  Sat Jan 22 21:14:54 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Sun, 23 Jan 2011 11:14:54 +0700
Subject: [Wrf-users] precipitation ice mass
In-Reply-To: <4D39E8F6.5080703@bol.com.br>
References: <4D39E8F6.5080703@bol.com.br>
Message-ID: <AANLkTinwnSB31z-FiM2vn+fV_DYwzVMAhMiL3xa3dCVV@mail.gmail.com>

Can you describe your domain? .


On Sat, Jan 22, 2011 at 3:13 AM, Gisele Zepka <giselezepka at bol.com.br>wrote:

> Dear users,
>
> I was very interested in one of the storm parameters that can be
> extracted from the WRF, however I was unable to get that variable from
> my simulations. I wonder if you could tell me how can I extract the
> "precipitation ice mass" from the model. My domain has a 3 km grid
> spacing and I am using the wrf_post from version 2.2 and ARWpost from
> version 3.1 to post-process my data.
>
> Thanks!
>
> All best,
>
> Gisele
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 
Dr.Mahally Kudsy
Weather Modification Technology Center
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From kganbour at yahoo.com  Mon Jan 24 10:40:23 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Mon, 24 Jan 2011 09:40:23 -0800 (PST)
Subject: [Wrf-users] [wrf-users]WPPS
Message-ID: <925436.65956.qm@web46305.mail.sp1.yahoo.com>

Dear All:
I compiled WPPS but I think It was n't compatible with my system.
Does WPPS work with some processors.
I attached the compilation and config.wpp file and the wrong after I run it.


best regards



      
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From mkudsy at gmail.com  Mon Jan 24 17:17:44 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Tue, 25 Jan 2011 07:17:44 +0700
Subject: [Wrf-users] [wrf-users]I couldn't run NCL
In-Reply-To: <729147.9049.qm@web46305.mail.sp1.yahoo.com>
References: <729147.9049.qm@web46305.mail.sp1.yahoo.com>
Message-ID: <AANLkTimu4fSu8EyTicZZ5znjuOxF-03YmJSy8XegCx=7@mail.gmail.com>

Khaled,

I think you haven't specified X11 libraries location. In Unix system they
may be located in different places
such as /usr/X11/lib, /usr/lib/X11 or /usr/X11/lib/X11
Try to locate such as Xaw using command
locate Xaw |more

Greet,
Mahally

On Mon, Jan 24, 2011 at 11:18 PM, Khaled Ganbour <kganbour at yahoo.com> wrote:

>
> Dear All
>
> I have tried to install NCL program.but always I have errors,I attached the
> log file for installation if you can help me
>
> I am looking forward for your replay.
>
> With best regards
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 
Dr.Mahally Kudsy
Weather Modification Technology Center
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From maemarcus at gmail.com  Tue Jan 25 14:04:47 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Wed, 26 Jan 2011 00:04:47 +0300
Subject: [Wrf-users] [wrf-users]WPPS
In-Reply-To: <925436.65956.qm@web46305.mail.sp1.yahoo.com>
References: <925436.65956.qm@web46305.mail.sp1.yahoo.com>
Message-ID: <AANLkTi=Tw0wmf=RjzvdD4dv9yH44Bii0BL9Fz24jofhj@mail.gmail.com>

Khaled,

Application complains about absence of SSE3 instructions support on your
cpu. In compile_wpp.log you attached there is a line

ifort -free -O3 -xT

here -xT, according to Intel Fortran manual, means use of SSE3. I think if
you disable this option, the application should work fine for you.

Good luck,
- D.

2011/1/24 Khaled Ganbour <kganbour at yahoo.com>

> Dear All:
> I compiled WPPS but I think It was n't compatible with my system.
> Does WPPS work with some processors.
> I attached the compilation and config.wpp file and the wrong after I run
> it.
>
>
> best regards
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From FLiu at azmag.gov  Wed Jan 26 16:08:53 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Wed, 26 Jan 2011 23:08:53 +0000
Subject: [Wrf-users] wrong time interval for wrfout
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C2262F1A1@mag9006>

Hi, Users,
I want to have hourly output for d01,d02, and d03 but 5 minutes for d04, please see time control session in namelist.input attached. I do not know why the time in wrfout_d04 increases by 2 seconds in each time level, that is not exact  5-minute interval.  The output file name looks messy (see attached wrfout_d04_files attached). Any hint will be helpful. Thank you.

Times =
  "2008-03-13_00:00:00",
  "2008-03-13_00:05:02",
  "2008-03-13_00:10:04",
  "2008-03-13_00:15:06",
  "2008-03-13_00:20:08",
  "2008-03-13_00:25:11",
  "2008-03-13_00:30:13",
  "2008-03-13_00:35:15",
  "2008-03-13_00:40:17",
  "2008-03-13_00:45:20",
  "2008-03-13_00:50:22",
  "2008-03-13_00:55:24" ;

Feng

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From kganbour at yahoo.com  Wed Jan 26 13:33:45 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Wed, 26 Jan 2011 12:33:45 -0800 (PST)
Subject: [Wrf-users] [wrf-users]ARWpost.exe fail to run
Message-ID: <910736.46103.qm@web46312.mail.sp1.yahoo.com>

Dear All:
After I have run ARW WRF model?I compiled ARWpost fine but when I run ARWpost.exe I get an error segmentation ?fault .I work on small computer but I inserted :ulimit -s unlimitedand no result.I attached the error and comile.log of ARWpost.

Best regards

Khaled




      
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From jliang at arb.ca.gov  Thu Jan 27 14:00:18 2011
From: jliang at arb.ca.gov (Liang, Jinyou@ARB)
Date: Thu, 27 Jan 2011 13:00:18 -0800
Subject: [Wrf-users] WPS: ungrib input data
Message-ID: <730450480DDFFB42A80EE000074F3E3005D8309ACA@MDTSSWECCR15.rf01.itservices.ca.gov>

Dear WRF expert,

I am a new user of WRF, and intend to run WRF-arw during Aug 16 (12Z) --- Aug 26 (12Z), 2010 in the following domain, as defined in the namelist.wps:

__________________________________________________________________________________________________
&share
 wrf_core = 'ARW',
 max_dom = 2,
 io_form_geogrid = 2,
 start_date = '2010-08-16_12:00:00','2010-08-16_12:00:00',
 end_date   = '2010-08-26_12:00:00','2010-08-26_12:00:00',
 interval_seconds = 10800
/
&geogrid
 parent_id         =   1,   1,
 parent_grid_ratio =   1,   3,
 s_we              =   1,   1,
 s_sn              =   1,   1,
 e_we              = 273, 190,
 e_sn              = 273, 190,
 i_parent_start    =   1,  29,
 j_parent_start    =   1,  49,
 geog_data_res     = 'modis_landuse_20class_30s+5m','modis_landuse_20class_30s+2m',
 dx = 12000,
 dy = 12000,
 map_proj = 'lambert',
 ref_lat   =  37.0,
 ref_lon   = -120.5,
 truelat1  =  30.0,
 truelat2  =  60.0,
 stand_lon = -120.5,
...

At the WPS steps, ungrib needs input GRIB files, for 'link_grib.csh', which I do not have. If you could provide the necessary data files, I would greatly appreciate your kindness.

With best regards,
Paul
Jinyou (Paul) Liang, Ph.D.
Staff Air Pollution Specialist
California Air Resources Board
Sacramento, CA 95812
Phone: (916) 327-8543

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From maemarcus at gmail.com  Thu Jan 27 14:00:49 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Fri, 28 Jan 2011 00:00:49 +0300
Subject: [Wrf-users] [wrf-users]ARWpost.exe fail to run
In-Reply-To: <910736.46103.qm@web46312.mail.sp1.yahoo.com>
References: <910736.46103.qm@web46312.mail.sp1.yahoo.com>
Message-ID: <AANLkTimKKZa8XopCYKbWJPOjTOYTbw5=ot-d=H6wwDg5@mail.gmail.com>

Khaled,

This is just a segfault message with no exact place where it happens. You
can try collecting core dump or run the app under debugger, for example gdb.
It's simple, first check "-g" option is added with your compilation options,
if yes, just  issue

[khaled at localhost ARWpost]$ gdb ./ARWpost.exe

then type "r" (without quotes) or "run" in gdb prompt, then after error
occurs, type "bt" for backtrace to see the trace of functions inside
applications. Post your trace here, this way it should get clearer, where it
fails.

2011/1/26 Khaled Ganbour <kganbour at yahoo.com>

> Dear All:
> After I have run ARW WRF model I compiled ARWpost fine but when I run
> ARWpost.exe I get an error segmentation  fault .
> I work on small computer but I inserted :ulimit -s unlimited
> and no result.
> I attached the error and comile.log of ARWpost.
>
>
> Best regards
>
>
> Khaled
>
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From hedde.cea at gmail.com  Mon Jan 31 05:25:15 2011
From: hedde.cea at gmail.com (Thierry HEDDE)
Date: Mon, 31 Jan 2011 13:25:15 +0100
Subject: [Wrf-users] WPS: ungrib input data
In-Reply-To: <730450480DDFFB42A80EE000074F3E3005D8309ACA@MDTSSWECCR15.rf01.itservices.ca.gov>
References: <730450480DDFFB42A80EE000074F3E3005D8309ACA@MDTSSWECCR15.rf01.itservices.ca.gov>
Message-ID: <AANLkTinCVrbPkr9yHRULLjF70_KHs5TAyqdZ9BNR3ptJ@mail.gmail.com>

Dear Jinyou
you may find the GFS data there :

http://nomads.ncep.noaa.gov/

For a beginner I would give you the advice to use wrfPortal to start with
wrf :

http://www.wrfportal.org/

Cordially

Thierry HEDDE
Laboratoire de Mod?lisation des Transferts dans l'Environnement
CEA/CADARACHE
13108 ST PAUL LEZ DURANCE CEDEX
FRANCE

2011/1/27 Liang, Jinyou at ARB <jliang at arb.ca.gov>

>  Dear WRF expert,
>
>
>
> I am a new user of WRF, and intend to run WRF-arw during Aug 16 (12Z) ---
> Aug 26 (12Z), 2010 in the following domain, as defined in the namelist.wps:
>
>
>
>
> __________________________________________________________________________________________________
>
> &share
>
>  wrf_core = 'ARW',
>
>  max_dom = 2,
>
>  io_form_geogrid = 2,
>
>  start_date = '2010-08-16_12:00:00','2010-08-16_12:00:00',
>
>  end_date   = '2010-08-26_12:00:00','2010-08-26_12:00:00',
>
>  interval_seconds = 10800
>
> /
>
> &geogrid
>
>  parent_id         =   1,   1,
>
>  parent_grid_ratio =   1,   3,
>
>  s_we              =   1,   1,
>
>  s_sn              =   1,   1,
>
>  e_we              = 273, 190,
>
>  e_sn              = 273, 190,
>
>  i_parent_start    =   1,  29,
>
>  j_parent_start    =   1,  49,
>
>  geog_data_res     =
> 'modis_landuse_20class_30s+5m','modis_landuse_20class_30s+2m',
>
>  dx = 12000,
>
>  dy = 12000,
>
>  map_proj = 'lambert',
>
>  ref_lat   =  37.0,
>
>  ref_lon   = -120.5,
>
>  truelat1  =  30.0,
>
>  truelat2  =  60.0,
>
>  stand_lon = -120.5,
>
> ?
>
>
>
> At the WPS steps, ungrib needs input GRIB files, for ?link_grib.csh?, which
> I do not have. If you could provide the necessary data files, I would
> greatly appreciate your kindness.
>
>
>
> With best regards,
>
> Paul
>
> *Jinyou (Paul) Liang, Ph.D.*
>
> *Staff Air Pollution Specialist*
>
> *California** Air Resources Board*
>
> *Sacramento**, CA 95812*
>
> *Phone: (916) 327-8543*
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


--
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From dbh409 at ku.edu  Mon Jan 31 23:28:56 2011
From: dbh409 at ku.edu (Huber, David)
Date: Tue, 1 Feb 2011 06:28:56 +0000
Subject: [Wrf-users] Compile WPS with gfortran and gcc
Message-ID: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>

Hello all,

I have run into a situation where I need to have a version of WPS compiled with the GNU compilers.  I need to be able to write WPS intermediate files in NCL using a Fortran stub so that WPS can process them and generate NetCDF input files.  I am using a GNU precompiled binaries version of NCL, so WPS and the stub must also be compiled with the GNU compilers.  This build of WPS will not be used normally, and I don't need any of the utilities, geogrid.exe, or ungrib.exe, just metgrid.exe.  It's a 64-bit CentOS machine running bash.  The architecture specific settings in configure.wps are as follows:

#### Architecture specific settings ####

# Settings for PC Linux x86_64, gfortran compiler,   serial, NO GRIB2
#
COMPRESSION_LIBS        =
COMPRESSION_INC         =
FDEFS                   =
FC              =       gfortran
SFC             =       gfortran
FFLAGS          =       -ffree-form -w -fno-underscoring
F77FLAGS        =       -ffixed-form -w -fno-underscoring
FNGFLAGS        =       $(FFLAGS)
LDFLAGS         =       -w
CC              =       gcc
SCC             =       gcc
CFLAGS          =       -w
CPP             =       /usr/bin/cpp -C -P -traditional
CPPFLAGS        =       -D_UNDERSCORE -DBYTESWAP -DLINUX -DIO_NETCDF -DBIT32

I get several errors with this and the compilation is not successful.  I'm not sure what flags I have wrong here, but any guidance would be much appreciated.

Thanks,

Dave

From dbh409 at ku.edu  Tue Feb  1 12:55:17 2011
From: dbh409 at ku.edu (Huber, David)
Date: Tue, 1 Feb 2011 19:55:17 +0000
Subject: [Wrf-users] Compile WPS with gfortran and gcc
In-Reply-To: <AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>
References: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>,
	<AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>
Message-ID: <A644457BC398E2478714678865618326AF8F@EXCH10-MBX-02.home.ku.edu>

Dmitry,

Primarily "undefined reference" errors.  For instance,


module_debug.o: In function `__module_debug__mprintf':
module_debug.f90:(.text+0xfe): undefined reference to `cio_set_log_filename'
module_debug.f90:(.text+0x1cb): undefined reference to `cio_set_log_filename'
module_debug.f90:(.text+0x2a4): undefined reference to `cio_set_log_filename'
module_debug.f90:(.text+0x7b5): undefined reference to `cio_prints'
module_debug.f90:(.text+0xbe9): undefined reference to `cio_prints'
module_debug.f90:(.text+0xc93): undefined reference to `cio_prints'
module_debug.f90:(.text+0x10c8): undefined reference to `cio_prints'
module_debug.f90:(.text+0x1185): undefined reference to `cio_prints'
module_debug.o:module_debug.f90:(.text+0x11a0): more undefined references to `cio_prints' follow


output_module.o: In function `__output_module__output_close':
output_module.f90:(.text+0x3f): undefined reference to `ext_int_ioclose'
output_module.f90:(.text+0x58): undefined reference to `ext_ncd_ioclose'
output_module.f90:(.text+0x71): undefined reference to `ext_gr1_ioclose'
output_module.f90:(.text+0x1e2): undefined reference to `ext_int_ioexit'
output_module.f90:(.text+0x1f6): undefined reference to `ext_ncd_ioexit'
output_module.f90:(.text+0x20a): undefined reference to `ext_gr1_ioexit'
output_module.o: In function `__output_module__ext_put_dom_ti_char':
output_module.f90:(.text+0x3fd): undefined reference to `ext_int_put_dom_ti_char'
output_module.f90:(.text+0x47e): undefined reference to `ext_ncd_put_dom_ti_char'
output_module.f90:(.text+0x4ff): undefined reference to `ext_gr1_put_dom_ti_char'

Dave

From dbh409 at ku.edu  Tue Feb  1 14:24:36 2011
From: dbh409 at ku.edu (Huber, David)
Date: Tue, 1 Feb 2011 21:24:36 +0000
Subject: [Wrf-users] Compile WPS with gfortran and gcc
In-Reply-To: <AANLkTikjA6m-5vyz5c7t-3nV0HqQJzeGJn4VmHbiYssj@mail.gmail.com>
References: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>
	<AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>
	<A644457BC398E2478714678865618326AF8F@EXCH10-MBX-02.home.ku.edu>,
	<AANLkTikjA6m-5vyz5c7t-3nV0HqQJzeGJn4VmHbiYssj@mail.gmail.com>
Message-ID: <A644457BC398E2478714678865618326AFB8@EXCH10-MBX-02.home.ku.edu>

Dmitry,

Thanks for the recipe!  This resulted in different erros, so I tried adding the flags -DIO_BINARY and -DIO_GRIB1 to CPPFLAGS, but that didn't change anything.  Also, in LDFLAGS, I tried explicitly adding the library directory with -L/home/dbh409/WRFV3/external/iogrib1 to no avail.  I'm getting the same "undefined reference" errors but also

/usr/bin/ld: cannot find -lio_grib1
collect2: ld returned 1 exit status


________________________________________
From: Dmitry N. Mikushin [maemarcus at gmail.com]
Sent: Tuesday, February 01, 2011 2:38 PM
To: Huber, David
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Compile WPS with gfortran and gcc

David,

Here's a common recipe to lookup for missing symbols. Navigate to the
project dir and grep for particular symbol you have issue with, for
instance:

marcusmae at msiwind:~$ cd Programming/wrfv3/
marcusmae at msiwind:~/Programming/wrfv3$ grep ext_gr1_put_dom_ti_char * -R
arch/md_calls.inc:           CALL ext_gr1_put_dom_ti_char ( Hndl,
Element,   Data, &
external/io_grib1/io_grib1.f90:SUBROUTINE ext_gr1_put_dom_ti_char (
DataHandle,Element,   Data,  &
external/io_grib1/io_grib1.f90:  call wrf_debug ( DEBUG , 'Entering
ext_gr1_put_dom_ti_char')
external/io_grib1/io_grib1.f90:END SUBROUTINE ext_gr1_put_dom_ti_char
Binary file external/io_grib1/libio_grib1.a matches
external/io_grib1/io_grib1.F:SUBROUTINE ext_gr1_put_dom_ti_char (
DataHandle,Element,   Data,  &
external/io_grib1/io_grib1.F:  call wrf_debug ( DEBUG , 'Entering
ext_gr1_put_dom_ti_char')
external/io_grib1/io_grib1.F:END SUBROUTINE ext_gr1_put_dom_ti_char
Binary file external/io_grib1/io_grib1.o matches
frame/module_io.f90:           CALL ext_gr1_put_dom_ti_char ( Hndl,
Element, Data, &
frame/md_calls.inc:           CALL ext_gr1_put_dom_ti_char ( Hndl,
Element,   Data, &
Binary file frame/module_io.o matches
frame/module_io_quilt.F:                    CALL
ext_gr1_put_dom_ti_char ( handle(DataHandle), TRIM(Element),
TRIM(CData), Status)
Binary file main/wrf.exe matches
Binary file main/libwrflib.a matches
Binary file main/ideal.exe matches

So, we've found some sources define target symbol, and some libraries
incorporate either its references or definitions. Now we can look
which libraries just use the symbol, and where is it really defined.
The nm tool can help:

marcusmae at msiwind:~/Programming/wrfv3$ nm main/libwrflib.a | grep
ext_gr1_put_dom_ti_char
         U ext_gr1_put_dom_ti_char_

"U" means libwrflib.a references, but does not define. It could be in
some other library:

marcusmae at msiwind:~/Programming/wrfv3$ nm
external/io_grib1/libio_grib1.a | grep ext_gr1_put_dom_ti_char
0000df30 T ext_gr1_put_dom_ti_char_
00d63600 b ext_gr1_put_dom_ti_char_$TMPSTR.0.56

- aha, "T" - means function body defined here, in libio_grib1.

So my guess would be to check if your app is linked with -lio_grib1,
and if not, adding -lio_grib1 to LDFLAGS should help.

Hope it helps,
- D.

2011/2/1 Huber, David <dbh409 at ku.edu>:
> Dmitry,
>
> Primarily "undefined reference" errors.  For instance,
>
>
> module_debug.o: In function `__module_debug__mprintf':
> module_debug.f90:(.text+0xfe): undefined reference to `cio_set_log_filename'
> module_debug.f90:(.text+0x1cb): undefined reference to `cio_set_log_filename'
> module_debug.f90:(.text+0x2a4): undefined reference to `cio_set_log_filename'
> module_debug.f90:(.text+0x7b5): undefined reference to `cio_prints'
> module_debug.f90:(.text+0xbe9): undefined reference to `cio_prints'
> module_debug.f90:(.text+0xc93): undefined reference to `cio_prints'
> module_debug.f90:(.text+0x10c8): undefined reference to `cio_prints'
> module_debug.f90:(.text+0x1185): undefined reference to `cio_prints'
> module_debug.o:module_debug.f90:(.text+0x11a0): more undefined references to `cio_prints' follow
>
>
> output_module.o: In function `__output_module__output_close':
> output_module.f90:(.text+0x3f): undefined reference to `ext_int_ioclose'
> output_module.f90:(.text+0x58): undefined reference to `ext_ncd_ioclose'
> output_module.f90:(.text+0x71): undefined reference to `ext_gr1_ioclose'
> output_module.f90:(.text+0x1e2): undefined reference to `ext_int_ioexit'
> output_module.f90:(.text+0x1f6): undefined reference to `ext_ncd_ioexit'
> output_module.f90:(.text+0x20a): undefined reference to `ext_gr1_ioexit'
> output_module.o: In function `__output_module__ext_put_dom_ti_char':
> output_module.f90:(.text+0x3fd): undefined reference to `ext_int_put_dom_ti_char'
> output_module.f90:(.text+0x47e): undefined reference to `ext_ncd_put_dom_ti_char'
> output_module.f90:(.text+0x4ff): undefined reference to `ext_gr1_put_dom_ti_char'
>
> Dave

From dbh409 at ku.edu  Tue Feb  1 15:01:58 2011
From: dbh409 at ku.edu (Huber, David)
Date: Tue, 1 Feb 2011 22:01:58 +0000
Subject: [Wrf-users] Compile WPS with gfortran and gcc
In-Reply-To: <AANLkTim=MShFbFpmFnqK-5HqYRjQw8Z+sr0LU28UdGpX@mail.gmail.com>
References: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>
	<AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>
	<A644457BC398E2478714678865618326AF8F@EXCH10-MBX-02.home.ku.edu>
	<AANLkTikjA6m-5vyz5c7t-3nV0HqQJzeGJn4VmHbiYssj@mail.gmail.com>
	<A644457BC398E2478714678865618326AFB8@EXCH10-MBX-02.home.ku.edu>,
	<AANLkTim=MShFbFpmFnqK-5HqYRjQw8Z+sr0LU28UdGpX@mail.gmail.com>
Message-ID: <A644457BC398E2478714678865618326AFD0@EXCH10-MBX-02.home.ku.edu>

Dmitry,

Oh now that was just silly.  OK, that takes care of the bulk of the errors.  There are still a few undefined references, but, I think I can take it from here.

Thanks a bunch!

Dave
________________________________________
From: Dmitry N. Mikushin [maemarcus at gmail.com]
Sent: Tuesday, February 01, 2011 3:46 PM
To: Huber, David
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Compile WPS with gfortran and gcc

David,

I think you're very close to get a working solution! The "-D" prefix
just defines symbol in fortran or C source code, e.g. if there is

#ifdef IO_BINARY
...
#endif

in code, then it will be effective with -DIO_BINARY. Is it what you want?

Also, with -L option you're right, but is there a "_" missing, i.e.
-L/home/dbh409/WRFV3/external/io_grib1

marcusmae at msiwind:~$ cd Programming/wrfv3/
marcusmae at msiwind:~/Programming/wrfv3$ find . -type f -name "libio_grib1.a"
./external/io_grib1/libio_grib1.a

?

- D.

2011/2/2 Huber, David <dbh409 at ku.edu>:
> Dmitry,
>
> Thanks for the recipe!  This resulted in different erros, so I tried adding the flags -DIO_BINARY and -DIO_GRIB1 to CPPFLAGS, but that didn't change anything.  Also, in LDFLAGS, I tried explicitly adding the library directory with -L/home/dbh409/WRFV3/external/iogrib1 to no avail.  I'm getting the same "undefined reference" errors but also
>
> /usr/bin/ld: cannot find -lio_grib1
> collect2: ld returned 1 exit status
>
>
> ________________________________________
> From: Dmitry N. Mikushin [maemarcus at gmail.com]
> Sent: Tuesday, February 01, 2011 2:38 PM
> To: Huber, David
> Cc: wrf-users at ucar.edu
> Subject: Re: [Wrf-users] Compile WPS with gfortran and gcc
>
> David,
>
> Here's a common recipe to lookup for missing symbols. Navigate to the
> project dir and grep for particular symbol you have issue with, for
> instance:
>
> marcusmae at msiwind:~$ cd Programming/wrfv3/
> marcusmae at msiwind:~/Programming/wrfv3$ grep ext_gr1_put_dom_ti_char * -R
> arch/md_calls.inc:           CALL ext_gr1_put_dom_ti_char ( Hndl,
> Element,   Data, &
> external/io_grib1/io_grib1.f90:SUBROUTINE ext_gr1_put_dom_ti_char (
> DataHandle,Element,   Data,  &
> external/io_grib1/io_grib1.f90:  call wrf_debug ( DEBUG , 'Entering
> ext_gr1_put_dom_ti_char')
> external/io_grib1/io_grib1.f90:END SUBROUTINE ext_gr1_put_dom_ti_char
> Binary file external/io_grib1/libio_grib1.a matches
> external/io_grib1/io_grib1.F:SUBROUTINE ext_gr1_put_dom_ti_char (
> DataHandle,Element,   Data,  &
> external/io_grib1/io_grib1.F:  call wrf_debug ( DEBUG , 'Entering
> ext_gr1_put_dom_ti_char')
> external/io_grib1/io_grib1.F:END SUBROUTINE ext_gr1_put_dom_ti_char
> Binary file external/io_grib1/io_grib1.o matches
> frame/module_io.f90:           CALL ext_gr1_put_dom_ti_char ( Hndl,
> Element, Data, &
> frame/md_calls.inc:           CALL ext_gr1_put_dom_ti_char ( Hndl,
> Element,   Data, &
> Binary file frame/module_io.o matches
> frame/module_io_quilt.F:                    CALL
> ext_gr1_put_dom_ti_char ( handle(DataHandle), TRIM(Element),
> TRIM(CData), Status)
> Binary file main/wrf.exe matches
> Binary file main/libwrflib.a matches
> Binary file main/ideal.exe matches
>
> So, we've found some sources define target symbol, and some libraries
> incorporate either its references or definitions. Now we can look
> which libraries just use the symbol, and where is it really defined.
> The nm tool can help:
>
> marcusmae at msiwind:~/Programming/wrfv3$ nm main/libwrflib.a | grep
> ext_gr1_put_dom_ti_char
>         U ext_gr1_put_dom_ti_char_
>
> "U" means libwrflib.a references, but does not define. It could be in
> some other library:
>
> marcusmae at msiwind:~/Programming/wrfv3$ nm
> external/io_grib1/libio_grib1.a | grep ext_gr1_put_dom_ti_char
> 0000df30 T ext_gr1_put_dom_ti_char_
> 00d63600 b ext_gr1_put_dom_ti_char_$TMPSTR.0.56
>
> - aha, "T" - means function body defined here, in libio_grib1.
>
> So my guess would be to check if your app is linked with -lio_grib1,
> and if not, adding -lio_grib1 to LDFLAGS should help.
>
> Hope it helps,
> - D.
>
> 2011/2/1 Huber, David <dbh409 at ku.edu>:
>> Dmitry,
>>
>> Primarily "undefined reference" errors.  For instance,
>>
>>
>> module_debug.o: In function `__module_debug__mprintf':
>> module_debug.f90:(.text+0xfe): undefined reference to `cio_set_log_filename'
>> module_debug.f90:(.text+0x1cb): undefined reference to `cio_set_log_filename'
>> module_debug.f90:(.text+0x2a4): undefined reference to `cio_set_log_filename'
>> module_debug.f90:(.text+0x7b5): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0xbe9): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0xc93): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0x10c8): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0x1185): undefined reference to `cio_prints'
>> module_debug.o:module_debug.f90:(.text+0x11a0): more undefined references to `cio_prints' follow
>>
>>
>> output_module.o: In function `__output_module__output_close':
>> output_module.f90:(.text+0x3f): undefined reference to `ext_int_ioclose'
>> output_module.f90:(.text+0x58): undefined reference to `ext_ncd_ioclose'
>> output_module.f90:(.text+0x71): undefined reference to `ext_gr1_ioclose'
>> output_module.f90:(.text+0x1e2): undefined reference to `ext_int_ioexit'
>> output_module.f90:(.text+0x1f6): undefined reference to `ext_ncd_ioexit'
>> output_module.f90:(.text+0x20a): undefined reference to `ext_gr1_ioexit'
>> output_module.o: In function `__output_module__ext_put_dom_ti_char':
>> output_module.f90:(.text+0x3fd): undefined reference to `ext_int_put_dom_ti_char'
>> output_module.f90:(.text+0x47e): undefined reference to `ext_ncd_put_dom_ti_char'
>> output_module.f90:(.text+0x4ff): undefined reference to `ext_gr1_put_dom_ti_char'
>>
>> Dave
>

From francina at hwr.arizona.edu  Wed Feb  2 10:46:49 2011
From: francina at hwr.arizona.edu (Francina Dominguez)
Date: Wed, 2 Feb 2011 10:46:49 -0700
Subject: [Wrf-users] Postdoctoral Position University of Arizona
Message-ID: <AANLkTiktkGgL7q88meo4dTJbPZbJfNhHfSCw3GXP=L_W@mail.gmail.com>

Postdoctoral Scholar ? Exploring hydrologic extremes in a changing
climate using regional climate modeling

Starting in the Spring of 2011, we seek a motivated scientist to
become part of our expanding interdisciplinary regional modeling
group, with a focus on land-atmosphere interactions. The selected
candidate will work on a DOE-funded project that seeks to understand
if regional climate models (in particular WRF) reproduce observed
extreme historical hydrologic events and provide useful information
about future hydrologic extremes. The selected candidate will be
tasked with high-resolution nested simulations of extreme events, and
their statistical characterization. Experience with WRF, good
programming skills and a background in statistical analysis is
desired. As part of the Hydrometeorology program at the University of
Arizona, this project offers the opportunity to collaborate with an
interdisciplinary group of scientists. The interested candidates
should contact Francina Dominguez (francina at hwr.arizona.edu) or
Chistopher Castro (castro at atmo.arizona.edu).

-- 
Francina Dominguez
Assistant Professor
Department of Atmospheric Sciences
Department of Hydrology and Water Resources
University of Arizona

From maemarcus at gmail.com  Tue Feb  1 12:43:15 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Tue, 1 Feb 2011 22:43:15 +0300
Subject: [Wrf-users] Compile WPS with gfortran and gcc
In-Reply-To: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>
Message-ID: <AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>

David,

And what are the errors you've encountered?

- D.

2011/2/1 Huber, David <dbh409 at ku.edu>:
> Hello all,
>
> I have run into a situation where I need to have a version of WPS compiled with the GNU compilers. ?I need to be able to write WPS intermediate files in NCL using a Fortran stub so that WPS can process them and generate NetCDF input files. ?I am using a GNU precompiled binaries version of NCL, so WPS and the stub must also be compiled with the GNU compilers. ?This build of WPS will not be used normally, and I don't need any of the utilities, geogrid.exe, or ungrib.exe, just metgrid.exe. ?It's a 64-bit CentOS machine running bash. ?The architecture specific settings in configure.wps are as follows:
>
> #### Architecture specific settings ####
>
> # Settings for PC Linux x86_64, gfortran compiler, ? serial, NO GRIB2
> #
> COMPRESSION_LIBS ? ? ? ?=
> COMPRESSION_INC ? ? ? ? =
> FDEFS ? ? ? ? ? ? ? ? ? =
> FC ? ? ? ? ? ? ?= ? ? ? gfortran
> SFC ? ? ? ? ? ? = ? ? ? gfortran
> FFLAGS ? ? ? ? ?= ? ? ? -ffree-form -w -fno-underscoring
> F77FLAGS ? ? ? ?= ? ? ? -ffixed-form -w -fno-underscoring
> FNGFLAGS ? ? ? ?= ? ? ? $(FFLAGS)
> LDFLAGS ? ? ? ? = ? ? ? -w
> CC ? ? ? ? ? ? ?= ? ? ? gcc
> SCC ? ? ? ? ? ? = ? ? ? gcc
> CFLAGS ? ? ? ? ?= ? ? ? -w
> CPP ? ? ? ? ? ? = ? ? ? /usr/bin/cpp -C -P -traditional
> CPPFLAGS ? ? ? ?= ? ? ? -D_UNDERSCORE -DBYTESWAP -DLINUX -DIO_NETCDF -DBIT32
>
> I get several errors with this and the compilation is not successful. ?I'm not sure what flags I have wrong here, but any guidance would be much appreciated.
>
> Thanks,
>
> Dave
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>

From maemarcus at gmail.com  Tue Feb  1 13:38:24 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Tue, 1 Feb 2011 23:38:24 +0300
Subject: [Wrf-users] Compile WPS with gfortran and gcc
In-Reply-To: <A644457BC398E2478714678865618326AF8F@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>
	<AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>
	<A644457BC398E2478714678865618326AF8F@EXCH10-MBX-02.home.ku.edu>
Message-ID: <AANLkTikjA6m-5vyz5c7t-3nV0HqQJzeGJn4VmHbiYssj@mail.gmail.com>

David,

Here's a common recipe to lookup for missing symbols. Navigate to the
project dir and grep for particular symbol you have issue with, for
instance:

marcusmae at msiwind:~$ cd Programming/wrfv3/
marcusmae at msiwind:~/Programming/wrfv3$ grep ext_gr1_put_dom_ti_char * -R
arch/md_calls.inc:           CALL ext_gr1_put_dom_ti_char ( Hndl,
Element,   Data, &
external/io_grib1/io_grib1.f90:SUBROUTINE ext_gr1_put_dom_ti_char (
DataHandle,Element,   Data,  &
external/io_grib1/io_grib1.f90:  call wrf_debug ( DEBUG , 'Entering
ext_gr1_put_dom_ti_char')
external/io_grib1/io_grib1.f90:END SUBROUTINE ext_gr1_put_dom_ti_char
Binary file external/io_grib1/libio_grib1.a matches
external/io_grib1/io_grib1.F:SUBROUTINE ext_gr1_put_dom_ti_char (
DataHandle,Element,   Data,  &
external/io_grib1/io_grib1.F:  call wrf_debug ( DEBUG , 'Entering
ext_gr1_put_dom_ti_char')
external/io_grib1/io_grib1.F:END SUBROUTINE ext_gr1_put_dom_ti_char
Binary file external/io_grib1/io_grib1.o matches
frame/module_io.f90:           CALL ext_gr1_put_dom_ti_char ( Hndl,
Element, Data, &
frame/md_calls.inc:           CALL ext_gr1_put_dom_ti_char ( Hndl,
Element,   Data, &
Binary file frame/module_io.o matches
frame/module_io_quilt.F:                    CALL
ext_gr1_put_dom_ti_char ( handle(DataHandle), TRIM(Element),
TRIM(CData), Status)
Binary file main/wrf.exe matches
Binary file main/libwrflib.a matches
Binary file main/ideal.exe matches

So, we've found some sources define target symbol, and some libraries
incorporate either its references or definitions. Now we can look
which libraries just use the symbol, and where is it really defined.
The nm tool can help:

marcusmae at msiwind:~/Programming/wrfv3$ nm main/libwrflib.a | grep
ext_gr1_put_dom_ti_char
         U ext_gr1_put_dom_ti_char_

"U" means libwrflib.a references, but does not define. It could be in
some other library:

marcusmae at msiwind:~/Programming/wrfv3$ nm
external/io_grib1/libio_grib1.a | grep ext_gr1_put_dom_ti_char
0000df30 T ext_gr1_put_dom_ti_char_
00d63600 b ext_gr1_put_dom_ti_char_$TMPSTR.0.56

- aha, "T" - means function body defined here, in libio_grib1.

So my guess would be to check if your app is linked with -lio_grib1,
and if not, adding -lio_grib1 to LDFLAGS should help.

Hope it helps,
- D.

2011/2/1 Huber, David <dbh409 at ku.edu>:
> Dmitry,
>
> Primarily "undefined reference" errors. ?For instance,
>
>
> module_debug.o: In function `__module_debug__mprintf':
> module_debug.f90:(.text+0xfe): undefined reference to `cio_set_log_filename'
> module_debug.f90:(.text+0x1cb): undefined reference to `cio_set_log_filename'
> module_debug.f90:(.text+0x2a4): undefined reference to `cio_set_log_filename'
> module_debug.f90:(.text+0x7b5): undefined reference to `cio_prints'
> module_debug.f90:(.text+0xbe9): undefined reference to `cio_prints'
> module_debug.f90:(.text+0xc93): undefined reference to `cio_prints'
> module_debug.f90:(.text+0x10c8): undefined reference to `cio_prints'
> module_debug.f90:(.text+0x1185): undefined reference to `cio_prints'
> module_debug.o:module_debug.f90:(.text+0x11a0): more undefined references to `cio_prints' follow
>
>
> output_module.o: In function `__output_module__output_close':
> output_module.f90:(.text+0x3f): undefined reference to `ext_int_ioclose'
> output_module.f90:(.text+0x58): undefined reference to `ext_ncd_ioclose'
> output_module.f90:(.text+0x71): undefined reference to `ext_gr1_ioclose'
> output_module.f90:(.text+0x1e2): undefined reference to `ext_int_ioexit'
> output_module.f90:(.text+0x1f6): undefined reference to `ext_ncd_ioexit'
> output_module.f90:(.text+0x20a): undefined reference to `ext_gr1_ioexit'
> output_module.o: In function `__output_module__ext_put_dom_ti_char':
> output_module.f90:(.text+0x3fd): undefined reference to `ext_int_put_dom_ti_char'
> output_module.f90:(.text+0x47e): undefined reference to `ext_ncd_put_dom_ti_char'
> output_module.f90:(.text+0x4ff): undefined reference to `ext_gr1_put_dom_ti_char'
>
> Dave

From maemarcus at gmail.com  Tue Feb  1 14:46:52 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Wed, 2 Feb 2011 00:46:52 +0300
Subject: [Wrf-users] Compile WPS with gfortran and gcc
In-Reply-To: <A644457BC398E2478714678865618326AFB8@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>
	<AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>
	<A644457BC398E2478714678865618326AF8F@EXCH10-MBX-02.home.ku.edu>
	<AANLkTikjA6m-5vyz5c7t-3nV0HqQJzeGJn4VmHbiYssj@mail.gmail.com>
	<A644457BC398E2478714678865618326AFB8@EXCH10-MBX-02.home.ku.edu>
Message-ID: <AANLkTim=MShFbFpmFnqK-5HqYRjQw8Z+sr0LU28UdGpX@mail.gmail.com>

David,

I think you're very close to get a working solution! The "-D" prefix
just defines symbol in fortran or C source code, e.g. if there is

#ifdef IO_BINARY
...
#endif

in code, then it will be effective with -DIO_BINARY. Is it what you want?

Also, with -L option you're right, but is there a "_" missing, i.e.
-L/home/dbh409/WRFV3/external/io_grib1

marcusmae at msiwind:~$ cd Programming/wrfv3/
marcusmae at msiwind:~/Programming/wrfv3$ find . -type f -name "libio_grib1.a"
./external/io_grib1/libio_grib1.a

?

- D.

2011/2/2 Huber, David <dbh409 at ku.edu>:
> Dmitry,
>
> Thanks for the recipe! ?This resulted in different erros, so I tried adding the flags -DIO_BINARY and -DIO_GRIB1 to CPPFLAGS, but that didn't change anything. ?Also, in LDFLAGS, I tried explicitly adding the library directory with -L/home/dbh409/WRFV3/external/iogrib1 to no avail. ?I'm getting the same "undefined reference" errors but also
>
> /usr/bin/ld: cannot find -lio_grib1
> collect2: ld returned 1 exit status
>
>
> ________________________________________
> From: Dmitry N. Mikushin [maemarcus at gmail.com]
> Sent: Tuesday, February 01, 2011 2:38 PM
> To: Huber, David
> Cc: wrf-users at ucar.edu
> Subject: Re: [Wrf-users] Compile WPS with gfortran and gcc
>
> David,
>
> Here's a common recipe to lookup for missing symbols. Navigate to the
> project dir and grep for particular symbol you have issue with, for
> instance:
>
> marcusmae at msiwind:~$ cd Programming/wrfv3/
> marcusmae at msiwind:~/Programming/wrfv3$ grep ext_gr1_put_dom_ti_char * -R
> arch/md_calls.inc: ? ? ? ? ? CALL ext_gr1_put_dom_ti_char ( Hndl,
> Element, ? Data, &
> external/io_grib1/io_grib1.f90:SUBROUTINE ext_gr1_put_dom_ti_char (
> DataHandle,Element, ? Data, ?&
> external/io_grib1/io_grib1.f90: ?call wrf_debug ( DEBUG , 'Entering
> ext_gr1_put_dom_ti_char')
> external/io_grib1/io_grib1.f90:END SUBROUTINE ext_gr1_put_dom_ti_char
> Binary file external/io_grib1/libio_grib1.a matches
> external/io_grib1/io_grib1.F:SUBROUTINE ext_gr1_put_dom_ti_char (
> DataHandle,Element, ? Data, ?&
> external/io_grib1/io_grib1.F: ?call wrf_debug ( DEBUG , 'Entering
> ext_gr1_put_dom_ti_char')
> external/io_grib1/io_grib1.F:END SUBROUTINE ext_gr1_put_dom_ti_char
> Binary file external/io_grib1/io_grib1.o matches
> frame/module_io.f90: ? ? ? ? ? CALL ext_gr1_put_dom_ti_char ( Hndl,
> Element, Data, &
> frame/md_calls.inc: ? ? ? ? ? CALL ext_gr1_put_dom_ti_char ( Hndl,
> Element, ? Data, &
> Binary file frame/module_io.o matches
> frame/module_io_quilt.F: ? ? ? ? ? ? ? ? ? ?CALL
> ext_gr1_put_dom_ti_char ( handle(DataHandle), TRIM(Element),
> TRIM(CData), Status)
> Binary file main/wrf.exe matches
> Binary file main/libwrflib.a matches
> Binary file main/ideal.exe matches
>
> So, we've found some sources define target symbol, and some libraries
> incorporate either its references or definitions. Now we can look
> which libraries just use the symbol, and where is it really defined.
> The nm tool can help:
>
> marcusmae at msiwind:~/Programming/wrfv3$ nm main/libwrflib.a | grep
> ext_gr1_put_dom_ti_char
> ? ? ? ? U ext_gr1_put_dom_ti_char_
>
> "U" means libwrflib.a references, but does not define. It could be in
> some other library:
>
> marcusmae at msiwind:~/Programming/wrfv3$ nm
> external/io_grib1/libio_grib1.a | grep ext_gr1_put_dom_ti_char
> 0000df30 T ext_gr1_put_dom_ti_char_
> 00d63600 b ext_gr1_put_dom_ti_char_$TMPSTR.0.56
>
> - aha, "T" - means function body defined here, in libio_grib1.
>
> So my guess would be to check if your app is linked with -lio_grib1,
> and if not, adding -lio_grib1 to LDFLAGS should help.
>
> Hope it helps,
> - D.
>
> 2011/2/1 Huber, David <dbh409 at ku.edu>:
>> Dmitry,
>>
>> Primarily "undefined reference" errors. ?For instance,
>>
>>
>> module_debug.o: In function `__module_debug__mprintf':
>> module_debug.f90:(.text+0xfe): undefined reference to `cio_set_log_filename'
>> module_debug.f90:(.text+0x1cb): undefined reference to `cio_set_log_filename'
>> module_debug.f90:(.text+0x2a4): undefined reference to `cio_set_log_filename'
>> module_debug.f90:(.text+0x7b5): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0xbe9): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0xc93): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0x10c8): undefined reference to `cio_prints'
>> module_debug.f90:(.text+0x1185): undefined reference to `cio_prints'
>> module_debug.o:module_debug.f90:(.text+0x11a0): more undefined references to `cio_prints' follow
>>
>>
>> output_module.o: In function `__output_module__output_close':
>> output_module.f90:(.text+0x3f): undefined reference to `ext_int_ioclose'
>> output_module.f90:(.text+0x58): undefined reference to `ext_ncd_ioclose'
>> output_module.f90:(.text+0x71): undefined reference to `ext_gr1_ioclose'
>> output_module.f90:(.text+0x1e2): undefined reference to `ext_int_ioexit'
>> output_module.f90:(.text+0x1f6): undefined reference to `ext_ncd_ioexit'
>> output_module.f90:(.text+0x20a): undefined reference to `ext_gr1_ioexit'
>> output_module.o: In function `__output_module__ext_put_dom_ti_char':
>> output_module.f90:(.text+0x3fd): undefined reference to `ext_int_put_dom_ti_char'
>> output_module.f90:(.text+0x47e): undefined reference to `ext_ncd_put_dom_ti_char'
>> output_module.f90:(.text+0x4ff): undefined reference to `ext_gr1_put_dom_ti_char'
>>
>> Dave
>

From maemarcus at gmail.com  Tue Feb  1 15:06:09 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Wed, 2 Feb 2011 01:06:09 +0300
Subject: [Wrf-users] Compile WPS with gfortran and gcc
In-Reply-To: <A644457BC398E2478714678865618326AFD0@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E2478714678865618326AED4@EXCH10-MBX-02.home.ku.edu>
	<AANLkTin1h4WX7X6fpGFa2kxczwS+3HoODH2yYwyOc9Kr@mail.gmail.com>
	<A644457BC398E2478714678865618326AF8F@EXCH10-MBX-02.home.ku.edu>
	<AANLkTikjA6m-5vyz5c7t-3nV0HqQJzeGJn4VmHbiYssj@mail.gmail.com>
	<A644457BC398E2478714678865618326AFB8@EXCH10-MBX-02.home.ku.edu>
	<AANLkTim=MShFbFpmFnqK-5HqYRjQw8Z+sr0LU28UdGpX@mail.gmail.com>
	<A644457BC398E2478714678865618326AFD0@EXCH10-MBX-02.home.ku.edu>
Message-ID: <AANLkTikv19dQzo5vz5H==9gHws9Y4+j4U-y_s4yAri+i@mail.gmail.com>

Great to hear it's solved now, good luck! :)

- D.

2011/2/2 Huber, David <dbh409 at ku.edu>:
> Dmitry,
>
> Oh now that was just silly. ?OK, that takes care of the bulk of the errors. ?There are still a few undefined references, but, I think I can take it from here.
>
> Thanks a bunch!
>
> Dave
> ________________________________________
> From: Dmitry N. Mikushin [maemarcus at gmail.com]
> Sent: Tuesday, February 01, 2011 3:46 PM
> To: Huber, David
> Cc: wrf-users at ucar.edu
> Subject: Re: [Wrf-users] Compile WPS with gfortran and gcc
>
> David,
>
> I think you're very close to get a working solution! The "-D" prefix
> just defines symbol in fortran or C source code, e.g. if there is
>
> #ifdef IO_BINARY
> ...
> #endif
>
> in code, then it will be effective with -DIO_BINARY. Is it what you want?
>
> Also, with -L option you're right, but is there a "_" missing, i.e.
> -L/home/dbh409/WRFV3/external/io_grib1
>
> marcusmae at msiwind:~$ cd Programming/wrfv3/
> marcusmae at msiwind:~/Programming/wrfv3$ find . -type f -name "libio_grib1.a"
> ./external/io_grib1/libio_grib1.a
>
> ?
>
> - D.
>
> 2011/2/2 Huber, David <dbh409 at ku.edu>:
>> Dmitry,
>>
>> Thanks for the recipe! ?This resulted in different erros, so I tried adding the flags -DIO_BINARY and -DIO_GRIB1 to CPPFLAGS, but that didn't change anything. ?Also, in LDFLAGS, I tried explicitly adding the library directory with -L/home/dbh409/WRFV3/external/iogrib1 to no avail. ?I'm getting the same "undefined reference" errors but also
>>
>> /usr/bin/ld: cannot find -lio_grib1
>> collect2: ld returned 1 exit status
>>
>>
>> ________________________________________
>> From: Dmitry N. Mikushin [maemarcus at gmail.com]
>> Sent: Tuesday, February 01, 2011 2:38 PM
>> To: Huber, David
>> Cc: wrf-users at ucar.edu
>> Subject: Re: [Wrf-users] Compile WPS with gfortran and gcc
>>
>> David,
>>
>> Here's a common recipe to lookup for missing symbols. Navigate to the
>> project dir and grep for particular symbol you have issue with, for
>> instance:
>>
>> marcusmae at msiwind:~$ cd Programming/wrfv3/
>> marcusmae at msiwind:~/Programming/wrfv3$ grep ext_gr1_put_dom_ti_char * -R
>> arch/md_calls.inc: ? ? ? ? ? CALL ext_gr1_put_dom_ti_char ( Hndl,
>> Element, ? Data, &
>> external/io_grib1/io_grib1.f90:SUBROUTINE ext_gr1_put_dom_ti_char (
>> DataHandle,Element, ? Data, ?&
>> external/io_grib1/io_grib1.f90: ?call wrf_debug ( DEBUG , 'Entering
>> ext_gr1_put_dom_ti_char')
>> external/io_grib1/io_grib1.f90:END SUBROUTINE ext_gr1_put_dom_ti_char
>> Binary file external/io_grib1/libio_grib1.a matches
>> external/io_grib1/io_grib1.F:SUBROUTINE ext_gr1_put_dom_ti_char (
>> DataHandle,Element, ? Data, ?&
>> external/io_grib1/io_grib1.F: ?call wrf_debug ( DEBUG , 'Entering
>> ext_gr1_put_dom_ti_char')
>> external/io_grib1/io_grib1.F:END SUBROUTINE ext_gr1_put_dom_ti_char
>> Binary file external/io_grib1/io_grib1.o matches
>> frame/module_io.f90: ? ? ? ? ? CALL ext_gr1_put_dom_ti_char ( Hndl,
>> Element, Data, &
>> frame/md_calls.inc: ? ? ? ? ? CALL ext_gr1_put_dom_ti_char ( Hndl,
>> Element, ? Data, &
>> Binary file frame/module_io.o matches
>> frame/module_io_quilt.F: ? ? ? ? ? ? ? ? ? ?CALL
>> ext_gr1_put_dom_ti_char ( handle(DataHandle), TRIM(Element),
>> TRIM(CData), Status)
>> Binary file main/wrf.exe matches
>> Binary file main/libwrflib.a matches
>> Binary file main/ideal.exe matches
>>
>> So, we've found some sources define target symbol, and some libraries
>> incorporate either its references or definitions. Now we can look
>> which libraries just use the symbol, and where is it really defined.
>> The nm tool can help:
>>
>> marcusmae at msiwind:~/Programming/wrfv3$ nm main/libwrflib.a | grep
>> ext_gr1_put_dom_ti_char
>> ? ? ? ? U ext_gr1_put_dom_ti_char_
>>
>> "U" means libwrflib.a references, but does not define. It could be in
>> some other library:
>>
>> marcusmae at msiwind:~/Programming/wrfv3$ nm
>> external/io_grib1/libio_grib1.a | grep ext_gr1_put_dom_ti_char
>> 0000df30 T ext_gr1_put_dom_ti_char_
>> 00d63600 b ext_gr1_put_dom_ti_char_$TMPSTR.0.56
>>
>> - aha, "T" - means function body defined here, in libio_grib1.
>>
>> So my guess would be to check if your app is linked with -lio_grib1,
>> and if not, adding -lio_grib1 to LDFLAGS should help.
>>
>> Hope it helps,
>> - D.
>>
>> 2011/2/1 Huber, David <dbh409 at ku.edu>:
>>> Dmitry,
>>>
>>> Primarily "undefined reference" errors. ?For instance,
>>>
>>>
>>> module_debug.o: In function `__module_debug__mprintf':
>>> module_debug.f90:(.text+0xfe): undefined reference to `cio_set_log_filename'
>>> module_debug.f90:(.text+0x1cb): undefined reference to `cio_set_log_filename'
>>> module_debug.f90:(.text+0x2a4): undefined reference to `cio_set_log_filename'
>>> module_debug.f90:(.text+0x7b5): undefined reference to `cio_prints'
>>> module_debug.f90:(.text+0xbe9): undefined reference to `cio_prints'
>>> module_debug.f90:(.text+0xc93): undefined reference to `cio_prints'
>>> module_debug.f90:(.text+0x10c8): undefined reference to `cio_prints'
>>> module_debug.f90:(.text+0x1185): undefined reference to `cio_prints'
>>> module_debug.o:module_debug.f90:(.text+0x11a0): more undefined references to `cio_prints' follow
>>>
>>>
>>> output_module.o: In function `__output_module__output_close':
>>> output_module.f90:(.text+0x3f): undefined reference to `ext_int_ioclose'
>>> output_module.f90:(.text+0x58): undefined reference to `ext_ncd_ioclose'
>>> output_module.f90:(.text+0x71): undefined reference to `ext_gr1_ioclose'
>>> output_module.f90:(.text+0x1e2): undefined reference to `ext_int_ioexit'
>>> output_module.f90:(.text+0x1f6): undefined reference to `ext_ncd_ioexit'
>>> output_module.f90:(.text+0x20a): undefined reference to `ext_gr1_ioexit'
>>> output_module.o: In function `__output_module__ext_put_dom_ti_char':
>>> output_module.f90:(.text+0x3fd): undefined reference to `ext_int_put_dom_ti_char'
>>> output_module.f90:(.text+0x47e): undefined reference to `ext_ncd_put_dom_ti_char'
>>> output_module.f90:(.text+0x4ff): undefined reference to `ext_gr1_put_dom_ti_char'
>>>
>>> Dave
>>
>

From pliu34 at gatech.edu  Wed Feb  2 13:41:01 2011
From: pliu34 at gatech.edu (Liu, Peng)
Date: Wed, 2 Feb 2011 15:41:01 -0500 (EST)
Subject: [Wrf-users] ungrib fixed data in NARR
Message-ID: <401451887.609307.1296679261902.JavaMail.root@mail5.gatech.edu>

Dear WRF users,
  I encounter a problem when trying to ungrib the fixed data of NARR.
I downloaded the 32km_native.EGDFIX.fixed data and ran link_grib.csh
and then ran ungrib.exe (just follow the advice in Vtable.NARR of WPS).
However, it turned out:
ungrib - grib edition num           1
 
GRIB SECTION 0:
     Grib Length                            :  172058
     Grib Edition                           :       1
 
GRIB SECTION 1:
     Length of PDS                          :      28
     Parameter Table Version                :     131
     Center ID                              :       7
     Process ID                             :      83
     Grid ID                                :     192
     Is there a Grid Desc. Section (GDS)?   :     Yes
     Is there a Bit Map Section (BMS)?      :      No
     Parameter                              :       7
     Level type                             :       1
     Height, pressure, etc                  :       0
     Year                                   :      79
     Month                                  :      11
     Day                                    :       8
     Hour                                   :       0
     Minute                                 :       0
     Forecast time unit                     :       1
     P1                                     :       0
     P2                                     :       0
     Time Range Indicator                   :       0
     Number in Ave?                         :       0
     Number missing from ave?               :       0
     Century                                :      20
     Sub-center                             :      15
     Decimal scale factor                   :       0
 
GRIB SECTION 2:
     Length of GRID Desc. Section           :      32
     Number of V. Coordinate Parms          :       0
     List Starting point                    :     255
     Data Representation type               :     203
 
GRIB SECTION 4:
     Length of BDS                          :       0
     0/1: grid-point or sph. harm. data     :       0
     0/1: simple or complex packing         :       0
     0/1: floating or integer               :       0
     0/1: No addl flags or addl flags       :       0
     Unused bits                            :       0
     Binary Scale Factor                    :       0
     Reference Value                        :        0.00000000
     Number of bits for packing             :       0
Unrecognized grid:      203
This grid is not currently supported.
Write your own program to put the data to the intermediate format
 
And the program ungrib can not run successfully.

Does anyone encounter such problem and know how to solve it?

Thanks in advance


Peng Liu

From thomas.schwitalla at uni-hohenheim.de  Thu Feb  3 00:03:15 2011
From: thomas.schwitalla at uni-hohenheim.de (Thomas Schwitalla)
Date: Thu, 03 Feb 2011 08:03:15 +0100
Subject: [Wrf-users] Wrf-users Digest, Vol 78, Issue 1
In-Reply-To: <mailman.9.1296673203.24740.wrf-users@ucar.edu>
References: <mailman.9.1296673203.24740.wrf-users@ucar.edu>
Message-ID: <4D4A5333.2050204@uni-hohenheim.de>

Dave,

that's what I successfully use:

FC                  =       gfortran
SFC                =       gfortran
FFLAGS          =       -ffree-form -O -fno-second-underscore
F77FLAGS      =       -ffixed-form -O -fno-second-underscore
FNGFLAGS     =       $(FFLAGS)
LDFLAGS       =
CC                 =       gcc
SCC               =       gcc
CFLAGS         =
CPP               =       /lib/cpp -C -P -traditional
CPPFLAGS     =       -D_UNDERSCORE -DBYTESWAP -DLINUX -DIO_NETCDF -DBIT32

Thomas


Am 02.02.2011 20:00, schrieb wrf-users-request at ucar.edu:
> Send Wrf-users mailing list submissions to
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> than "Re: Contents of Wrf-users digest..."
>
>
> Today's Topics:
>
>     1. Compile WPS with gfortran and gcc (Huber, David)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 1 Feb 2011 06:28:56 +0000
> From: "Huber, David"<dbh409 at ku.edu>
> Subject: [Wrf-users] Compile WPS with gfortran and gcc
> To: "wrf-users at ucar.edu"<wrf-users at ucar.edu>
> Message-ID:
> 	<A644457BC398E2478714678865618326AED4 at EXCH10-MBX-02.home.ku.edu>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hello all,
>
> I have run into a situation where I need to have a version of WPS compiled with the GNU compilers.  I need to be able to write WPS intermediate files in NCL using a Fortran stub so that WPS can process them and generate NetCDF input files.  I am using a GNU precompiled binaries version of NCL, so WPS and the stub must also be compiled with the GNU compilers.  This build of WPS will not be used normally, and I don't need any of the utilities, geogrid.exe, or ungrib.exe, just metgrid.exe.  It's a 64-bit CentOS machine running bash.  The architecture specific settings in configure.wps are as follows:
>
> #### Architecture specific settings ####
>
> # Settings for PC Linux x86_64, gfortran compiler,   serial, NO GRIB2
> #
> COMPRESSION_LIBS        =
> COMPRESSION_INC         =
> FDEFS                   =
> FC              =       gfortran
> SFC             =       gfortran
> FFLAGS          =       -ffree-form -w -fno-underscoring
> F77FLAGS        =       -ffixed-form -w -fno-underscoring
> FNGFLAGS        =       $(FFLAGS)
> LDFLAGS         =       -w
> CC              =       gcc
> SCC             =       gcc
> CFLAGS          =       -w
> CPP             =       /usr/bin/cpp -C -P -traditional
> CPPFLAGS        =       -D_UNDERSCORE -DBYTESWAP -DLINUX -DIO_NETCDF -DBIT32
>
> I get several errors with this and the compilation is not successful.  I'm not sure what flags I have wrong here, but any guidance would be much appreciated.
>
> Thanks,
>
> Dave
>
>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 78, Issue 1
> ****************************************

From Don.Morton at alaska.edu  Thu Feb  3 11:33:56 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Thu, 3 Feb 2011 09:33:56 -0900
Subject: [Wrf-users] ungrib fixed data in NARR
In-Reply-To: <401451887.609307.1296679261902.JavaMail.root@mail5.gatech.edu>
References: <401451887.609307.1296679261902.JavaMail.root@mail5.gatech.edu>
Message-ID: <AANLkTinTJNzhpGc_+J+ciwyaXT9yZGCe2NaFtSCXHDc-@mail.gmail.com>

On Wed, Feb 2, 2011 at 11:41 AM, Liu, Peng <pliu34 at gatech.edu> wrote:

> Dear WRF users,
>  I encounter a problem when trying to ungrib the fixed data of NARR.
> I downloaded the 32km_native.EGDFIX.fixed data and ran link_grib.csh
> and then ran ungrib.exe (just follow the advice in Vtable.NARR of WPS).
>

Howdy, I tend to use the 32km_output.AWIP32.fixed

I have some crude notes available in Appendix A of

http://weather.arsc.edu/Training/WRFTutorial-June2009/SampleCaseStudies_June2009.pdf

They're written for local use, but maybe they'll give you some ideas.

Cheers,

Don Morton

-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://www.arsc.edu/~morton/ <http://www.arsc.edu/%7Emorton/>
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From c.chemel at herts.ac.uk  Thu Feb  3 15:14:38 2011
From: c.chemel at herts.ac.uk (Chemel Charles)
Date: Thu, 3 Feb 2011 22:14:38 +0000
Subject: [Wrf-users] Research Fellows in Air Pollution - Health and Air
	Quality - Climate Interactions
In-Reply-To: <18EF08266D889C41A14D1099C7102CE2B6D488D40F@UH-MAILSTOR.herts.ac.uk>
References: <18EF08266D889C41A14D1099C7102CE2B6D488D40F@UH-MAILSTOR.herts.ac.uk>
Message-ID: <F718689D-FC44-4650-A0F4-6B17427385DD@herts.ac.uk>

Research Fellow in Air Pollution and Health ImpactsUniversity of  
Hertfordshire - Centre for Atmospheric and Instrumentation Research  
(CAIR)
Research Opportunities For A Self Motivated And Dynamic Scientist
Starting salary up to: ?31,671 (initially available for 3 years)
You will be a high achieving individual with the drive and ambition to  
undertake research into topics related to air pollution and health  
impacts, such as, measurement and characterisation of particulate  
matter, source apportionment, health impact of aerosols or multiscale  
integrated modelling of air quality. As part of your duties you will  
assist in managing projects and explore further development of CAIR  
research programmes. You must have excellent communication skills in  
English and some experience of project management involving multiple  
interdisciplinary partners, preferably as part of the European  
Framework Programme.

Closing Date: Friday 11 February 2011                               
Quote Reference: 001882AC

You must have a good first degree in a relevant subject and a PhD in  
atmospheric sciences or related fields. Please contact Professor  
Ranjeet S Sokhi for informal discussions Tel: +44 (0) 1707 284520  
Email: r.s.sokhi at herts.ac.uk. Information on CAIR can be found on the  
following link http://www.transphorm.eu and http://strc.herts.ac.uk/ 
cair.

FOR FIXED TERM CONTRACTS
?Under current UKBA regulations, the University is unlikely to be able  
to get a work permit in respect of this post. We can therefore only  
accept applications from people who will have the right to work in the  
UK for the total duration of the contract.?

The University offers a range of benefits including a final salary  
pension scheme, professional development, family friendly policies,  
child care vouchers, waiving of course fees for the children of staff  
at UH, discounted memberships at the Hertfordshire Sports Village and  
generous annual leave.

Apply online at http://www.herts.ac.uk/jobs or request an application  
pack from Human Resources on 01707 284802 (24hr voicemail), quoting  
the appropriate reference number.

-------------------------------------------------

Research Fellow in Modelling Air Quality and ClimateInteractions on  
Regional Scales

University of Hertfordshire - Centre for Atmospheric and  
Instrumentation Research (CAIR)
Research Opportunities For A Self Motivated And Dynamic Scientist
Starting salary up to: ?26,523 (initially available for 2 years)

You will be a high achieving research scientist who has the drive and  
ambition to work on frontier science problems in the field of air  
quality and climate interactions. As part of international project  
teams, you will develop methodologies for understanding the feedback  
interactions between air quality and climate processes. You will have  
experience of using and developing high resolution, regional and  
global scale air pollution and climate models in combination with  
measurements.

You must have a good first degree in a relevant subject and a PhD in  
atmospheric sciences or related fields. Please contact Professor  
Ranjeet S Sokhi for informal discussions Tel: +44 (0) 1707 284520  
Email: r.s.sokhi at herts.ac.uk. Information on CAIR can be found on the  
following link: http//strc.herts.ac.uk/cair.

Closing Date: 11 February  
2011                                            Quote Reference: 001282

FOR FIXED TERM CONTRACTS
?Under current UKBA regulations, the University is unlikely to be able  
to get a work permit in respect of this post. We can therefore only  
accept applications from people who will have the right to work in the  
UK for the total duration of the contract.?
The University offers a range of benefits including a final salary  
pension scheme, professional development, family friendly policies,  
child care vouchers, waiving of course fees for the children of staff  
at UH, discounted memberships at the Hertfordshire Sports Village and  
generous annual leave.

Apply online at http://www.herts.ac.uk/jobs or request an application  
pack from Human Resources on 01707 284802 (24hr voicemail), quoting  
the appropriate reference number.

From dbh409 at ku.edu  Thu Feb  3 15:01:50 2011
From: dbh409 at ku.edu (Huber, David)
Date: Thu, 3 Feb 2011 22:01:50 +0000
Subject: [Wrf-users] Plot a line on a map with WRF data
Message-ID: <A644457BC398E2478714678865618326B1AA@EXCH10-MBX-02.home.ku.edu>

Howdy all,

I've created a cross-section plot and I would like to plot a line on a map with land cover showing the location of the cross-section. Following is the snippet I've written for that purpose:

  in_C = addfile("/opt2/newC/wrfout_d01_2001-07-01_01.nc","r")
  file_pre_C = "/opt2/newC/wrfout_d01_2001-"
  file_pre_A = "/opt2/newA/wrfout_d01_2001-"
  t_max = int2flt(n-m)

  z_max = dimsizes(in_C->QVAPOR(0,:,0,0))
  zw2 = z_max+1

  x1 = 100
  x2 = 130
  xu1 = x1
  xu2 = x2+1
  y1 = 80
  y2 = 125
  yv1 = y1
  yv2 = y2+1
  y_max = y2-y1+1
  x_max = x2-x1+1
  xu_max = x_max+1
  yv_max = y_max+1

  lc = in_C->LU_INDEX(0,:,:)

  res = True
  res at cnFillOn  = True
  res at cnLevelSelectionMode = "ManualLevels"
  res at cnLevelSpacingF = 1
  res at cnFillMode = "RasterFill"

  wks3 = gsn_open_wks("eps", "slice_line")
  gsn_define_colormap(wks3, "wind_17lev")

  mpres = True
  mpres at mpUSStateLineThicknessF = 2
  mpres at mpUSStateLineColor = "black"
  mpres at mpGeophysicalLineColor = "black"
  mpres at mpGeophysicalLineThicknessF = 2
  mpres at mpNationalLineThicknessF = 2
  mpres at mpNationalLineColor = "black"

  plot_bg = wrf_contour(in_C,wks3,lc,res)

  pres = True
  pres at gsLineColor = "black"
  pres at gsLineThicknessF = 1.5

  plot_line = gsn_add_polyline(wks3,plot_bg,(/x1,y1/),(/x2,y2/),pres)
  map_line = wrf_map_overlays(in_C, wks3 ,(/plot_bg,plot_line/) ,True,mpres)

  delete(lc)
  delete(mpres)
  delete(pres)

When I run this code, I get the following warnings and errors:

[dbh409 at Starbuck ncl_scripts]$ ncl slice_winds.ncl 
Copyright (C) 1995-2010 - All Rights Reserved
University Corporation for Atmospheric Research
NCAR Command Language Version 5.2.0
The use of this software is governed by a License Agreement.
See http://www.ncl.ucar.edu/ for more details.
warning:tiMainString isn't a resource in this object
warning:NhlGetValues:Error retrieving tiMainString
fatal:Execute: Error occurred at or near line 3426 in file /usr/local/lib/ncarg/nclscripts/wrf/WRFUserARW.ncl

fatal:Execute: Error occurred at or near line 52 in file slice_winds.ncl


Where line 52 corresponds to the line "map_line = wrf_map_overlays(in_C, wks3 ,(/plot_bg,plot_line/) ,True,mpres)".  It's fairly apparent that wrf_map_overlays doesn't like adding the gsn_add_polyline plot to the mix. I've gone looking for other built in functions for this purpose, but have yet to find anything else that might work. Has anyone else found a suitable function? If not, is there a way to force gsn_add_polyline to play nice?

Thanks,

Dave

From k_radhika at tropmet.res.in  Sun Feb  6 23:44:56 2011
From: k_radhika at tropmet.res.in (Kanase Radhika D.)
Date: Mon, 7 Feb 2011 12:14:56 +0530 (IST)
Subject: [Wrf-users] BMJ Cumulus rain
In-Reply-To: <313405511.145597.1297060958065.JavaMail.root@mail1.tropmet.res.in>
Message-ID: <510971665.145614.1297061096722.JavaMail.root@mail1.tropmet.res.in>

Hi all,

     I ran the WRF (3.1.1) model for a tropical cyclone case with cumulus, microphysics and PBL sensitivity. But when I checked the cumulus rain for BMJ scheme for all combinations of PBL and microphysics in GrADS, it shows constant field value 0(even though the cumulus convection is kept on). But for KF and GD scheme this parameter is displayed well. 
     I am not able to resolve the problem.

The namelist file is attached for reference.

    
Suggestions are welcome

Smt. Radhika D. Kanase
IITM Research Fellow
T.S. Division
IITM, Pune-08


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From shachen at ucdavis.edu  Sun Feb  6 23:54:53 2011
From: shachen at ucdavis.edu (Shu-Hua Chen)
Date: Sun, 06 Feb 2011 22:54:53 -0800
Subject: [Wrf-users] Upcoming deadline for the 14th Mesoscale conference
Message-ID: <4D4F973D.8090202@ucdavis.edu>

Dear WRF users,

I would like to bring your attention for the upcoming 14th conference on 
mesoscale processes, which will be held 1-4 August 2011 in Los Angles 
collocated with ARAM. The abstract deadline is 1 April. Below is the 
link to the call for papers!

http://www.ametsoc.org/MEET/ann/callforpapers.html#14meso

Shuhua

-- 
+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+
| Shu-Hua Chen                                        |
+ Dept. of Land, Air&  Water Resources                +
| University of California                            |
+ Tel:  530-752-1822,                                 +
| Fax:  530-752-1793                                  |
+ email:shachen at ucdavis.edu                           +
| http://atm.ucdavis.edu/mmg                          |
+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+--+

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From izzaroyan at yahoo.com  Tue Feb  8 01:16:17 2011
From: izzaroyan at yahoo.com (fatkhuroyan -)
Date: Tue, 8 Feb 2011 00:16:17 -0800 (PST)
Subject: [Wrf-users] wrf-var3.2.1 gen_be error
Message-ID: <843374.40900.qm@web46109.mail.sp1.yahoo.com>





----- Forwarded Message ----
From: fatkhuroyan - <izzaroyan at yahoo.com>
To: wrfhelp at ucar.edu
Sent: Mon, February 7, 2011 4:01:52 PM
Subject: wrf-var3.2.1 gen_be error



 
 
Dear all,
I try to create my own be.dat but there were error messages when i run 
gen_be_wrapper.ksh using my  wrfout.

"Run Stage 3: Read 3D control variable fields, and calculate vertical 
covariances.
---------------------------------------------------------------
Beginning CPU time: Mon Feb  7 10:40:09 WIT 2011
Ending CPU time: Mon Feb  7 10:40:33 WIT 2011
Beginning CPU time: Mon Feb  7 10:40:33 WIT 2011
---------------------------------------------------------------
Run Stage 4: Calculate horizontal covariances (regional  lengthscales).
---------------------------------------------------------------
Ending CPU time: Mon Feb  7 11:14:12 WIT 2011
Stage gen_be_diags failed with error 2 "

But when i use wrfout test data,then run ge_be_wrapper,it was SUCCES.I don't 
know,there was something wrong with my wrfout.Could someone help me,please !
here i attach my namelist.wps,namelist.input,two file from gen_be result.

Thanks


      
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From soleiman at rambler.ru  Tue Feb  8 10:23:50 2011
From: soleiman at rambler.ru (Mostamandy Soleiman)
Date: Tue, 8 Feb 2011 20:23:50 +0300
Subject: [Wrf-users] WRFV3.2 compilation Error
Message-ID: <1162519986.20110208202350@rambler.ru>

Hello, Wrf-users.

I tried  to compile WRF V3.2.1 with gfortran + gcc with but
unfortunately i haven't got success . I attached the compile.log and
configure.wps
could someone help me !what is the problem.

thanks in advance !




-- 
? ?????????,
 Mostamandy                          mailto:soleiman at rambler.ru


From eric.kemp at nasa.gov  Tue Feb  8 12:10:42 2011
From: eric.kemp at nasa.gov (Kemp, Eric M. (GSFC-610.0)[NORTHROP GRUMMAN INFORMATION TECH])
Date: Tue, 8 Feb 2011 13:10:42 -0600
Subject: [Wrf-users] Problems running WRF-Var 3.2.1 with PREPBUFR
Message-ID: <C976FF62.1938%Eric.Kemp@nasa.gov>


Dear wrfhelp/wrf-users:

I am learning to use the WRF-Var 3.2.1 program and following the example in the on-line User?s Guide.  I can successfully run the program using the conventional observations in ASCII format.  However, when I try reading the PREPBUFR file instead of the ASCII version I encounter run-time errors and fail to execute an analysis.

I am running on an Intel Xeon platform with the ifort/icc 11.1.038 compilers and Intel MPI 3.2.011 (I?m not using the shared memory build option).  I set the BUFR environment variable to 1 before running ?configure? and see ?-DBUFR? in the resulting ?configure.wrf? file.  I also confirm that BUFRLIB in var/external/bufr is built ? I modified preproc.sh to echo all commands as they are executed before I compiled WRFDA.

So far I?ve attempted six different tests (BUFRLIB compiled with ?DLITTLE_ENDIAN unless otherwise noted):

Test 1.  Compile w/ -convert big_endian in configure.wrf.  Use linux PREPBUFR.  BUFRLIB aborts, cannot file "BUFR" in file.

Test 2.  Compile w/ -convert big_endian in configure.wrf.  Use regular PREPBUFR.   BUFRLIB doesn't return any obs, program completes w/o data assimilation.

Test 3.  Compile w/o -convert big_endian in configure.wrf.  Use linux PREPBUFR.  Reads obs.  Cannot read be file.

Test 4.  Compile w/o -convert big_endian in configure.wrf.  Use regular PREPBUFR.  BUFRLIB aborts; cannot find "BUFR" in file.

Test 5.  Compile w/ -convert big_endian, force BUFRLIB compile with -DBIG_ENDIAN.  Use linux PREPBUFR.  BUFRLIB aborts, can't determine machine native language.

Test 6.  Compile w/ -convert big_endian, force BUFRLIB compile with -DBIG_ENDIAN.  Use regular PREPBUFR.  BUFRLIB aborts, can't determine machine
native language.

Note that I?m only trying to assimilate conventional obs at this point (satellite radiances will come later).  Also, I have a separate utility that can successfully read the linux PREPBUFR file (it can?t read the regular PREPBUFR).

Can anyone help?

Thanks,

-Eric

--------------------------------------------------------------------
Eric M. Kemp                   Northrop Grumman Corporation
Meteorologist                  Information Systems
Civil Enterprise Solutions     Civil Systems Division

                               Goddard Space Flight Center
                               Mailstop 610.3
                               Greenbelt, MD 20771
                               Telephone   301-286-9768
                               Fax         301-286-1775
                               E-mail:     eric.kemp at nasa.gov
                               E-mail:     eric.kemp at ngc.com
--------------------------------------------------------------------


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From soleiman at rambler.ru  Tue Feb  8 10:47:59 2011
From: soleiman at rambler.ru (Mostamandy Soleiman)
Date: Tue, 8 Feb 2011 20:47:59 +0300
Subject: [Wrf-users] WRFV3.2 compilation Error
Message-ID: <69822787.20110208204759@rambler.ru>

Hello, Wrf-users.

I tried  to compile WRF V3.2.1 with gfortran + gcc with but
unfortunately i haven't got success . I attached the compile.log and
configure.wps
could someone help me !what is the problem.

thanks in advance !




-- 
? ?????????,
 Mostamandy                          mailto:soleiman at rambler.ru
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From albi.jk at gmail.com  Wed Feb  9 02:15:09 2011
From: albi.jk at gmail.com (alberto giacomini)
Date: Wed, 9 Feb 2011 10:15:09 +0100
Subject: [Wrf-users] WRFV3.2 compilation Error
In-Reply-To: <1162519986.20110208202350@rambler.ru>
References: <1162519986.20110208202350@rambler.ru>
Message-ID: <AANLkTi=VCiacCDquR2rsep+oDrOHLSrcd6Dxc=d9_R1d@mail.gmail.com>

hi,
  I gave a suggestion some time ago; the problem arised usually with
old versions of gcc/gfortran. update the compiler suite or that time I
suggested as follows:

substitute the Times definition (in external/io_grib2/io_grib2.F):
!     character (DateStrLen), dimension(:),allocatable  :: Times(:)
    character (DateStrLen), pointer       :: Times(:)

and use associated() instead of allocated:
!     if (allocated(fileinfo(DataHandle)%Times)) then
!        deallocate(fileinfo(DataHandle)%Times)
    if (associated(fileinfo(DataHandle)%Times)) then
       deallocate(fileinfo(DataHandle)%Times)

it compiles with gfortran 4.1.2 but i don't know if it really works.

Let me know the perfomances if you compare with commercial compilers.

alberto

2011/2/8 Mostamandy Soleiman <soleiman at rambler.ru>:
> Hello, Wrf-users.
>
> I tried ?to compile WRF V3.2.1 with gfortran + gcc with but
> unfortunately i haven't got success . I attached the compile.log and
> configure.wps
> could someone help me !what is the problem.
>
> thanks in advance !
>
>
>
>
> --
> ? ?????????,
> ?Mostamandy ? ? ? ? ? ? ? ? ? ? ? ? ?mailto:soleiman at rambler.ru
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 
Web site: http://www.webalice.it/albi.jk/

From hamed319 at yahoo.com  Wed Feb  9 10:25:43 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Wed, 9 Feb 2011 09:25:43 -0800 (PST)
Subject: [Wrf-users] Fatal -Onlone Tutorial
Message-ID: <46587.73479.qm@web161210.mail.bf1.yahoo.com>

Dear all,
I set every thing just as online tutorial. but when I run the ./wrf.exe for domain 2 I got this error:
any suggestion?

Timing for Writing wrfout_d01_2007-08-16_00:00:00 for domain??????? 1:??? 0.15610 elapsed seconds.
??????????? 2 input_wrf: wrf_get_next_time current_date: 2007-08-16_00:00:00 Status =?????????? -4
?-------------- FATAL CALLED ---------------
?FATAL CALLED FROM FILE:? <stdin>? LINE:???? 705
?? ... May have run out of valid boundary conditions in file wrfbdy_d01

Thanks in advance,
Hamed




 
____________________________________________________________________________________
Finding fabulous fares is fun.  
Let Yahoo! FareChase search your favorite travel sites to find flight and hotel bargains.
http://farechase.yahoo.com/promo-generic-14795097
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From hedde.cea at gmail.com  Wed Feb  9 05:37:40 2011
From: hedde.cea at gmail.com (Thierry HEDDE)
Date: Wed, 9 Feb 2011 13:37:40 +0100
Subject: [Wrf-users] WRFV3.2 compilation Error
In-Reply-To: <1162519986.20110208202350@rambler.ru>
References: <1162519986.20110208202350@rambler.ru>
Message-ID: <AANLkTi=+ywHh-BVyRjkD_D9E83KWL_w2M21S=j+9CbY6@mail.gmail.com>

Hi,

I had the pb with WRF 3.1 and I see it is not corrected yet. Question for
WRF team : how should I do to contribute to improve WRF?


Here is the reference to my question :
http://mailman.ucar.edu/pipermail/wrf-users/2009/001410.html

The fortran90 coding used in the routine io_grib2.F is not the standard, so
I had to modify a bit this routine.

I join the modified routine for WRF 3.1 (be carrefull for merging!)

here is the lines I had to change around the variable "Times" :
allocatable becomes pointer
allocated becomes associated

     character (DateStrLen), dimension(:), pointer :: Times(:)
...
     if (associated(fileinfo(DataHandle)%Times)) then
...
           if (associated(fileinfo(DataHandle)%Times)) &

Good luck!

-- 
Thierry HEDDE
Laboratoire de Mod?lisation des Transferts dans l'Environnement
CEA/CADARACHE
DEN/DTN/SMTM/LMTE
B?t. 307 Pi?ce 9
13108 ST PAUL LEZ DURANCE CEDEX
FRANCE

2011/2/8 Mostamandy Soleiman <soleiman at rambler.ru>

> Hello, Wrf-users.
>
> I tried  to compile WRF V3.2.1 with gfortran + gcc with but
> unfortunately i haven't got success . I attached the compile.log and
> configure.wps
> could someone help me !what is the problem.
>
> thanks in advance !
>
>
>
>
> --
> ? ?????????,
>  Mostamandy                          mailto:soleiman at rambler.ru
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
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From maemarcus at gmail.com  Tue Feb  8 15:20:10 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Wed, 9 Feb 2011 01:20:10 +0300
Subject: [Wrf-users] WRFV3.2 compilation Error
In-Reply-To: <69822787.20110208204759@rambler.ru>
References: <69822787.20110208204759@rambler.ru>
Message-ID: <AANLkTi=pYy7ZvOt740Tej6vd+VvNZUEzeiN3k3nfAfkR@mail.gmail.com>

Mostamandy,

At least one of your errors

     character (DateStrLen), dimension(:),allocatable  :: Times(:)
                                                    1
Error: Attribute at (1) is not allowed in a TYPE definition

can't be reproduced with gfortran 4.4.3. What version of gfortran are you using?

8 ??????? 2011??. 20:47 ???????????? Mostamandy Soleiman
<soleiman at rambler.ru> ???????:
> Hello, Wrf-users.
>
> I tried ?to compile WRF V3.2.1 with gfortran + gcc with but
> unfortunately i haven't got success . I attached the compile.log and
> configure.wps
> could someone help me !what is the problem.
>
> thanks in advance !
>
>
>
>
> --
> ? ?????????,
> ?Mostamandy ? ? ? ? ? ? ? ? ? ? ? ? ?mailto:soleiman at rambler.ru
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>

From ZWu at trcsolutions.com  Wed Feb  9 12:01:17 2011
From: ZWu at trcsolutions.com (Wu, Zhong-Xiang (Lowell,MA-US))
Date: Wed, 9 Feb 2011 14:01:17 -0500
Subject: [Wrf-users] NAM 12-km Tiled data for WRF Initialization
Message-ID: <10BD6AED41582E47946AABB34C58D1F803112C2778@EXVMBX2.EMPLOYEES.ROOT.local>

Hi,

I am trying to use NAM 12-km tiled forecasts from NCEP in the WPS processing to create met initial files for WRF modeling.  My WRF domain covers an area more than one NAM 12-km tile, so multiple NAM files are needed at one hour.

Is there anyone who used the NAM 12-km tiled forecasts to initialize WRF in the similar way? And how should I use the data if WPS accepts multiple tiled files?

Thanks,

Zhong



*********************************************************
Zhong-Xiang Wu, Ph.D
TRC
650 Suffolk Street
Lowell, Massachusetts, 01854

Email: zwu at trcsolutions.com<mailto:zwu at trcsolutions.com>
          zhong at alum.mit.edu<mailto:zhong at alum.mit.edu>
Tel:     978-656-3667
 Fax:   978-453-1995
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From FLiu at azmag.gov  Thu Feb 10 11:44:05 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Thu, 10 Feb 2011 18:44:05 +0000
Subject: [Wrf-users] NAM 12-km Tiled data for WRF Initialization
In-Reply-To: <10BD6AED41582E47946AABB34C58D1F803112C2778@EXVMBX2.EMPLOYEES.ROOT.local>
References: <10BD6AED41582E47946AABB34C58D1F803112C2778@EXVMBX2.EMPLOYEES.ROOT.local>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C226414F9@mag9006>

Zhong,
There are two resources you can download the datasets from 12-km NAM model

(1)    http://nomads.ncdc.noaa.gov/data.php#hires_weather_datasets, you may have a direct access to this site.

(2)    http://dss.ucar.edu/datasets/ds335.0/matrix.html you may need to register before you get access. That is free.

The grid value is 218 (B). You should build your WPS with GRB2 option because 12-km NAM are GRIB2 data. You may check out the basic grid information about the datasets as below before you download them. In respect to application of WPS with multiple tiles in a data, please refer to 3-34~ 37 in the latest version of User's Guide issued in July 2010. I hope it is helpful.

VALUE  GRID DESCRIPTIONS about 12-km NAM Data
218 (B)[B]   Grid over the Contiguous United States (used by the 12-km NAM Model) (Lambert Confo
rmal)
Nx 614
Ny 428
La1 12.190N
Lo1 226.514E = 133.459W
Res. & Comp. Flag 0 0 0 0 1 0 0 0
Lov 265.000E = 95.000W
Dx 12.19058 km
Dy 12.19058 km
Projection Flag (bit 1) 0 (not bipolar)
Scanning Mode (bits 1 2 3) 0 1 0
Lat/Lon values of the corners of the grid
(1,1) 12.190N, 133.459W
(1,428) 54.564N, 152.878W
(614,428) 57.328N, 49.420W
(614,1) 14.342N, 65.127W
Pole point
(I,J) (347.668, 1190.097)

Good luck.
Feng

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Wu, Zhong-Xiang (Lowell,MA-US)
Sent: Wednesday, February 09, 2011 12:01 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] NAM 12-km Tiled data for WRF Initialization

Hi,

I am trying to use NAM 12-km tiled forecasts from NCEP in the WPS processing to create met initial files for WRF modeling.  My WRF domain covers an area more than one NAM 12-km tile, so multiple NAM files are needed at one hour.

Is there anyone who used the NAM 12-km tiled forecasts to initialize WRF in the similar way? And how should I use the data if WPS accepts multiple tiled files?

Thanks,

Zhong



*********************************************************
Zhong-Xiang Wu, Ph.D
TRC
650 Suffolk Street
Lowell, Massachusetts, 01854

Email: zwu at trcsolutions.com<mailto:zwu at trcsolutions.com>
          zhong at alum.mit.edu<mailto:zhong at alum.mit.edu>
Tel:     978-656-3667
 Fax:   978-453-1995
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From hamed319 at yahoo.com  Thu Feb 10 09:03:05 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Thu, 10 Feb 2011 08:03:05 -0800 (PST)
Subject: [Wrf-users] ./real.exe - FATAL
Message-ID: <124414.2730.qm@web161207.mail.bf1.yahoo.com>

Dear All,

When I run the ./real.exe I just get this Fatal:

?Namelist dfi_control not found in namelist.input. Using registry defaults for v
?ariables in dfi_control
?Namelist tc not found in namelist.input. Using registry defaults for variables 
?in tc
?Namelist scm not found in namelist.input. Using registry defaults for variables
? in scm
?Namelist fire not found in namelist.input. Using registry defaults for variable
?s in fire
?--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval
? = 0 for all domains
?--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval
? = 0 for all domains
?--- NOTE: grid_fdda is 0 for domain????? 1, setting gfdda interval and ending t
?ime to 0 for that domain.
?--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain????? 1, setting
? sgfdda interval and ending time to 0 for that domain.
?--- NOTE: obs_nudge_opt is 0 for domain????? 1, setting obs nudging interval an
?d ending time to 0 for that domain.
?--- NOTE: grid_fdda is 0 for domain????? 2, setting gfdda interval and ending t
?ime to 0 for that domain.
?--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain????? 2, setting
? sgfdda interval and ending time to 0 for that domain.
?--- NOTE: obs_nudge_opt is 0 for domain????? 2, setting obs nudging interval an
?d ending time to 0 for that domain.
?--- NOTE: num_soil_layers has been set to????? 4
?REAL_EM V3.2.1 PREPROCESSOR
? *************************************
? Parent domain
? ids,ide,jds,jde??????????? 1????????? 74?????????? 1????????? 61
? ims,ime,jms,jme?????????? -4????????? 79????????? -4????????? 66
? ips,ipe,jps,jpe??????????? 1????????? 74?????????? 1????????? 61
? *************************************
?DYNAMICS OPTION: Eulerian Mass Coordinate
??? alloc_space_field: domain??????????? 1,??? 104874600 bytes allocated
Time period #?? 1 to process = 2007-07-23_00:00:00.
Time period #?? 2 to process = 2007-07-23_01:00:00.
Time period #?? 3 to process = 2007-07-23_02:00:00.
Time period #?? 4 to process = 2007-07-23_03:00:00.
Time period #?? 5 to process = 2007-07-23_04:00:00.
Time period #?? 6 to process = 2007-07-23_05:00:00.
Time period #?? 7 to process = 2007-07-23_06:00:00.
Total analysis times to input =??? 7.
? 
?-----------------------------------------------------------------------------
? 
?Domain? 1: Current date being processed: 2007-07-23_00:00:00.0000, which is loop #?? 1 out of??? 7
?configflags%julyr, %julday, %gmt:??????? 2007???????? 204? 0.0000000E+00
?metgrid input_wrf.F first_date_input = 2007-07-23_00:00:00
? metgrid input_wrf.F first_date_nml = 2007-07-23_00:00:00
?-------------- FATAL CALLED ---------------
?FATAL CALLED FROM FILE:? <stdin>? LINE:???? 678
? input_wrf.F: SIZE MISMATCH:? namelist ide,jde,num_metgrid_levels=????????? 74 
????????? 61????????? 27; input data ide,jde,num_metgrid_levels=???????? 100??? 
????? 111????????? 27?????????????????????????????????????????????????????????? 
??????????????????? 
?-------------------------------------------

Any suggestion would be appreciated.
Hamed




      
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From mmkamal at sciborg.uwaterloo.ca  Wed Feb  9 21:35:14 2011
From: mmkamal at sciborg.uwaterloo.ca (mmkamal at sciborg.uwaterloo.ca)
Date: Wed, 09 Feb 2011 23:35:14 -0500
Subject: [Wrf-users] NetCDF error with NARR data
Message-ID: <20110209233514.16204717mkq1fjsw@www.nexusmail.uwaterloo.ca>

Hi All,


I have been trying to run WRF 3.2.1 in Linux 2.6.18-194.32.1.el5  
x86_64 GNU/Linux with the following module :

intel/intel-v11.1.072
openmpi/1.4.1-intel-v11.0-ofed
fftw/2.1.5-intel-openmpi
netcdf/4.0.1_nc3_intel

I have compiled WPS serial and WRFV3 OpenMP option and successfully  
finished running the winter storm 2000 test case and output is okay.  
But while I am trying to run a simulation using NARR (North American  
Regional Reanalysis ) found the following message during real.exe but  
the following file wrfbdy_d01 and wrfinput_d01 is generate. In the log  
file I get the following message:


Domain 1: Current date being processed: 2005-08-28_00:00:00.0000,  
which is loop # 1 out of 9
configflags%julyr, %julday, %gmt: 2005 240 0.0000000E+00
med_sidata_input: calling open_r_dataset for met_em.d<domain>.<date>
med_sidata_input: calling input_auxinput1
metgrid input_wrf.F first_date_input = 2005-08-28_00:00:00
metgrid input_wrf.F first_date_nml = 2005-08-28_00:00:00
NetCDF error: NetCDF: Attribute not found
NetCDF error in ext_ncd_get_dom_ti.code REAL, line 83 Element P_TOP
NetCDF error: NetCDF: Attribute not found
NetCDF error in ext_ncd_get_dom_ti.code REAL, line 83 Element GMT
NetCDF error: NetCDF: Attribute not found
..............
...............
...............
...............

med_sidata_input: back from init_domain
LBC valid between these times 2005-08-28_21:00:00.0000 2005-08-29_00:00:00
Timing for output 0 s.
Timing for loop # 9 = 0 s.
backfrom med_sidata_input
real_em: SUCCESS COMPLETE REAL_EM INIT
----------------------------------------
Begin PBS Epilogue Wed Feb 9 22:58:32 EST 2011 1297310312
Job ID: 4353809.gpc-sched
Username: mkamal
Group: jcl
Job Name: T74-04-1cpu-8d
Session: 30241
Limits: neednodes=1:ppn=8,nodes=1:ppn=8,walltime=02:00:00
Resources: cput=00:00:01,mem=112668kb,vmem=206264kb,walltime=00:00:08
Queue: batch_eth
Account:
Nodes: gpc-f104n027
Killing leftovers...

End PBS Epilogue Wed Feb 9 22:58:32 EST 2011 1297310312


I could not succeed running WRF using NARR data. Could any one please  
help me to find out the problem.



Thanks in advance
Kamal





From wrf at nusculus.com  Wed Feb  9 18:33:10 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Wed, 9 Feb 2011 18:33:10 -0700
Subject: [Wrf-users] NAM 12-km Tiled data for WRF Initialization
In-Reply-To: <10BD6AED41582E47946AABB34C58D1F803112C2778@EXVMBX2.EMPLOYEES.ROOT.local>
References: <AcvIi7slP8n4ddAzTP+QYie+VUlX4A==>
	<10BD6AED41582E47946AABB34C58D1F803112C2778@EXVMBX2.EMPLOYEES.ROOT.local>
Message-ID: <AANLkTindO58ZUQ6z3gk0NopgCyA=X460a87LzFMn0mhK@mail.gmail.com>

I have not personally tried using tiled data, but you could probably handle
the different tiles as different sources of data. There is a section in the
WRF users guide that describes how to do that. It is titled: Using Multiple
Meteorological Data Sources

Or perhaps someone else has the experience to give specific directions.

Kevin

On Wed, Feb 9, 2011 at 12:01 PM, Wu, Zhong-Xiang (Lowell,MA-US) <
ZWu at trcsolutions.com> wrote:

> Hi,
>
>
>
> I am trying to use NAM 12-km tiled forecasts from NCEP in the WPS
> processing to create met initial files for WRF modeling.  My WRF domain
> covers an area more than one NAM 12-km tile, so multiple NAM files are
> needed at one hour.
>
>
>
> Is there anyone who used the NAM 12-km tiled forecasts to initialize WRF in
> the similar way? And how should I use the data if WPS accepts multiple tiled
> files?
>
>
>
> Thanks,
>
>
>
> Zhong
>
>
>
>
>
>
>
> *********************************************************
>
> *Zhong-Xiang Wu, Ph.D*
>
> TRC
>
> 650 Suffolk Street
>
> Lowell, Massachusetts, 01854
>
>
>
> Email: zwu at trcsolutions.com
>
>           zhong at alum.mit.edu
>
> Tel:     978-656-3667
>
>  Fax:   978-453-1995
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From wrf at nusculus.com  Wed Feb  9 18:45:13 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Wed, 9 Feb 2011 18:45:13 -0700
Subject: [Wrf-users] Fatal -Onlone Tutorial
In-Reply-To: <46587.73479.qm@web161210.mail.bf1.yahoo.com>
References: <46587.73479.qm@web161210.mail.bf1.yahoo.com>
Message-ID: <AANLkTinNznM3s8B_LpetZXTwxcjbLCzRajU18QC+feHg@mail.gmail.com>

Greetings,

When I get that message it usually means that real.exe, which creates the
wrfbdy_d01 file, had different run times than wrf.exe, which uses the
wrfbdy_d01 file. That can happen when I have run_days, run_hours, etc that
do not match the start_year, start_month, etc and the end_year, end_month,
etc.  That is because wrf.exe uses the end_year, end_month, etc but real.exe
uses the run_days, run_hours, etc. However, in newer versions of WRF, if you
completely leave the run_days, run_hours, etc out of the namelist.input
file, that forces real.exe to use the end_year, end_month, etc fields.

That is a bit confusing, but try looking into that part of the
namelist.input file.

Kevin

On Wed, Feb 9, 2011 at 10:25 AM, Hamed Sharifi <hamed319 at yahoo.com> wrote:

> Dear all,
> I set every thing just as online tutorial. but when I run the ./wrf.exe for
> domain 2 I got this error:
> any suggestion?
>
> Timing for Writing wrfout_d01_2007-08-16_00:00:00 for domain        1:
> 0.15610 elapsed seconds.
>             2 input_wrf: wrf_get_next_time current_date:
> 2007-08-16_00:00:00 Status =           -4
>  -------------- FATAL CALLED ---------------
>  FATAL CALLED FROM FILE:  <stdin>  LINE:     705
>    ... May have run out of valid boundary conditions in file wrfbdy_d01
>
> Thanks in advance,
> Hamed
>
>
> ------------------------------
> We won't tell. Get more on shows you hate to love<http://us.rd.yahoo.com/evt=49980/*http://tv.yahoo.com/collections/265>
> (and love to hate): Yahoo! TV's Guilty Pleasures list.<http://us.rd.yahoo.com/evt=49980/*http://tv.yahoo.com/collections/265>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From FLiu at azmag.gov  Fri Feb 11 11:43:53 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Fri, 11 Feb 2011 18:43:53 +0000
Subject: [Wrf-users] ./real.exe - FATAL
In-Reply-To: <124414.2730.qm@web161207.mail.bf1.yahoo.com>
References: <124414.2730.qm@web161207.mail.bf1.yahoo.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C22641794@mag9006>

Hamed,
Try to check the num_metgrid_levels in met_em.d0* files by `ncdump -h | grep num_metgrid_levels` , then set the consistent number for  num_metgrid_levels in your namelist.input. Thanks.
Feng


From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Hamed Sharifi
Sent: Thursday, February 10, 2011 9:03 AM
To: wrf-users at ucar.edu
Subject: [Wrf-users] ./real.exe - FATAL

Dear All,

When I run the ./real.exe I just get this Fatal:

 Namelist dfi_control not found in namelist.input. Using registry defaults for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval
  = 0 for all domains
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1, setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging interval an
 d ending time to 0 for that domain.
 --- NOTE: grid_fdda is 0 for domain      2, setting gfdda interval and ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      2, setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      2, setting obs nudging interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 REAL_EM V3.2.1 PREPROCESSOR
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,    104874600 bytes allocated
Time period #   1 to process = 2007-07-23_00:00:00.
Time period #   2 to process = 2007-07-23_01:00:00.
Time period #   3 to process = 2007-07-23_02:00:00.
Time period #   4 to process = 2007-07-23_03:00:00.
Time period #   5 to process = 2007-07-23_04:00:00.
Time period #   6 to process = 2007-07-23_05:00:00.
Time period #   7 to process = 2007-07-23_06:00:00.
Total analysis times to input =    7.

 -----------------------------------------------------------------------------

 Domain  1: Current date being processed: 2007-07-23_00:00:00.0000, which is loop #   1 out of    7
 configflags%julyr, %julday, %gmt:        2007         204  0.0000000E+00
 metgrid input_wrf.F first_date_input = 2007-07-23_00:00:00
  metgrid input_wrf.F first_date_nml = 2007-07-23_00:00:00
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:     678
  input_wrf.F: SIZE MISMATCH:  namelist ide,jde,num_metgrid_levels=          74
          61          27; input data ide,jde,num_metgrid_levels=         100
      111          27

 -------------------------------------------

Any suggestion would be appreciated.
Hamed


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From df6.626 at gmail.com  Sat Feb 12 04:15:07 2011
From: df6.626 at gmail.com (Dmitry Vinokurov)
Date: Sat, 12 Feb 2011 16:15:07 +0500
Subject: [Wrf-users]  NetCDF paths
Message-ID: <AANLkTikjK1U-OSSHGV41r5cw-v9uLf2LO0cs5cdiiW83@mail.gmail.com>

Hi!

I'm trying to compile WRF 3.2.1 on CentOS 5.5 (netcdf packages from rep) and
get following error after ./configure:
----
grep: /usr/include/netcdf.inc: No such file or directory
----
NETCDF environment variable is set to "/usr", so as I understand WRF expect
includes to be in "${NETCDF}/include" etc.

Actually grep is right, there is no such file "/usr/include/netcdf.inc",
NetCDF includes are located in "/usr/include/netcdf-3/" and libraries are in
"/usr/lib64".

The question is: is it possible to set separate paths for NetCDF includes
and libraries? For example, Jasper uses $JASPERINC and $JASPERLIB variables
and I think it'll be nice to work with NetCDF in the same way.

Thanks.

--
Best regards,
Dmitry Vinokurov
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From Matthew.Foster at noaa.gov  Mon Feb 14 09:28:10 2011
From: Matthew.Foster at noaa.gov (Matt Foster)
Date: Mon, 14 Feb 2011 10:28:10 -0600
Subject: [Wrf-users] Using RUC input data with NOAH LSM
Message-ID: <4D59581A.40900@noaa.gov>

Is the use of RUC input data (for initial and/or boundary conditions) 
possible when using the NOAH LSM?  Comments I found in 
module_initialize_real seem to imply that it is, however, when I try it 
real hangs.

Matt

-- 
Do not go where the path may lead; go instead where there is no path and leave a trail.
-- Ralph Waldo Emerson

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From irene.gallai at arpa.fvg.it  Tue Feb 15 00:51:59 2011
From: irene.gallai at arpa.fvg.it (Irene Gallai)
Date: Tue, 15 Feb 2011 08:51:59 +0100
Subject: [Wrf-users] ./real.exe - FATAL
In-Reply-To: <124414.2730.qm@web161207.mail.bf1.yahoo.com>
References: <124414.2730.qm@web161207.mail.bf1.yahoo.com>
Message-ID: <4D5A309F.7050401@arpa.fvg.it>


Your domain size in namelist.input (ide and jde entries) need to be 
exactly the same used to run the preprocessing (namelist of WPS) . In 
your case the input files you are using are defined over a grid of 
100x111 points whereas in your namelist you defined a domain of 74x61 
points. The vertical levels are correct





On 02/10/2011 05:03 PM, Hamed Sharifi wrote:
> Dear All,
>
> When I run the ./real.exe I just get this Fatal:
>
>  Namelist dfi_control not found in namelist.input. Using registry 
> defaults for v
>  ariables in dfi_control
>  Namelist tc not found in namelist.input. Using registry defaults for 
> variables
>  in tc
>  Namelist scm not found in namelist.input. Using registry defaults for 
> variables
>   in scm
>  Namelist fire not found in namelist.input. Using registry defaults 
> for variable
>  s in fire
>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and 
> auxinput4_interval
>   = 0 for all domains
>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and 
> auxinput4_interval
>   = 0 for all domains
>  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval 
> and ending t
>  ime to 0 for that domain.
>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      
> 1, setting
>   sgfdda interval and ending time to 0 for that domain.
>  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging 
> interval an
>  d ending time to 0 for that domain.
>  --- NOTE: grid_fdda is 0 for domain      2, setting gfdda interval 
> and ending t
>  ime to 0 for that domain.
>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      
> 2, setting
>   sgfdda interval and ending time to 0 for that domain.
>  --- NOTE: obs_nudge_opt is 0 for domain      2, setting obs nudging 
> interval an
>  d ending time to 0 for that domain.
>  --- NOTE: num_soil_layers has been set to      4
>  REAL_EM V3.2.1 PREPROCESSOR
>   *************************************
>   Parent domain
>   ids,ide,jds,jde            1          74           1          61
>   ims,ime,jms,jme           -4          79          -4          66
>   ips,ipe,jps,jpe            1          74           1          61
>   *************************************
>  DYNAMICS OPTION: Eulerian Mass Coordinate
>     alloc_space_field: domain            1,    104874600 bytes allocated
> Time period #   1 to process = 2007-07-23_00:00:00.
> Time period #   2 to process = 2007-07-23_01:00:00.
> Time period #   3 to process = 2007-07-23_02:00:00.
> Time period #   4 to process = 2007-07-23_03:00:00.
> Time period #   5 to process = 2007-07-23_04:00:00.
> Time period #   6 to process = 2007-07-23_05:00:00.
> Time period #   7 to process = 2007-07-23_06:00:00.
> Total analysis times to input =    7.
>
>  -----------------------------------------------------------------------------
>
>  Domain  1: Current date being processed: 2007-07-23_00:00:00.0000, 
> which is loop #   1 out of    7
>  configflags%julyr, %julday, %gmt:        2007         204  0.0000000E+00
>  metgrid input_wrf.F first_date_input = 2007-07-23_00:00:00
>   metgrid input_wrf.F first_date_nml = 2007-07-23_00:00:00
>  -------------- FATAL CALLED ---------------
> FATAL CALLED FROM FILE: <stdin>  LINE:     678
>   input_wrf.F: SIZE MISMATCH:  namelist 
> ide,jde,num_metgrid_levels=          74
>           61          27; input data 
> ide,jde,num_metgrid_levels=         100
>       111          27
>
>  -------------------------------------------
>
> Any suggestion would be appreciated.
> Hamed
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users


-- 
+------------------------------------+
   Irene Gallai

   Agenzia Regionale per la Protezione dell'Ambiente (ARPA FVG )
Via Cairoli 14
I-33057 Palmanova (UD) ITALY
tel centr.: +39 0432 922611
e-mail : irene.gallai at arpa.fvg.it
+------------------------------------+

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From hamed319 at yahoo.com  Tue Feb 15 02:23:09 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Tue, 15 Feb 2011 01:23:09 -0800 (PST)
Subject: [Wrf-users] wrfcamx Compiling
Message-ID: <950937.80965.qm@web161216.mail.bf1.yahoo.com>

Dear All,
I use "make --check" command to compile the wrfcamx program, but I got this error:

ld: cannot find -lnetcdf

Any suggestion?
Thanks in advance,
Hamed


 
____________________________________________________________________________________
It's here! Your new message!  
Get new email alerts with the free Yahoo! Toolbar.
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From objacoe at hotmail.com  Tue Feb 15 07:37:26 2011
From: objacoe at hotmail.com (Obadias Cossa)
Date: Tue, 15 Feb 2011 16:37:26 +0200
Subject: [Wrf-users] ECHAM5 data to ingest in WRF
Message-ID: <COL108-W10A14884413A06C6FE9F7EA0D30@phx.gbl>


Dear Users

I have to ingest into WRF data from a global model, say ECHAM5. The problem however is that WRF requests data in vertical pressure coordinates, but ECHAM5, gives in sigma coordinates. May one help on how to handle this problem.
What would be the steps to follow on building Vtables, and other necessary inputs for the WRF?

The choice of ECHAM5, was due to the possibility is has of reproducing the past climates. In fact, I intend to simulate the climates of the past in my region (Africa) using WRF.

Thanks,

Obadias Cossa
Student at UCT
Department of Oceanography


 		 	   		  
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From maemarcus at gmail.com  Mon Feb 14 09:51:29 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Mon, 14 Feb 2011 19:51:29 +0300
Subject: [Wrf-users] NetCDF paths
In-Reply-To: <AANLkTikjK1U-OSSHGV41r5cw-v9uLf2LO0cs5cdiiW83@mail.gmail.com>
References: <AANLkTikjK1U-OSSHGV41r5cw-v9uLf2LO0cs5cdiiW83@mail.gmail.com>
Message-ID: <AANLkTin7iMAzysc=WL2jTbQZQ9yss6hYZLkMfWUMc9VU@mail.gmail.com>

Hi,

Different distros often move around the stuff that goes in dev (devel)
packages, e.g. headers or static libraries. There is less deviation
with shared libraries, but still sometimes they are also kept under
subdirectiories, rather than in /usr/lib64, for example, mpich on red
hats is in /usr/lib64/mpich2/lib/ and will also fail with simple
-lmpich linking. So, *manual* adjustment of paths can't be fully
avoided, there are too many different situations. It should be better
to make configure script to perform some basic search and prompt for
input if one of multiple variants can be used. Also, ./configure can
use pkg-config to locate dependencies, if package provides .pc info.

- D.

2011/2/12 Dmitry Vinokurov <df6.626 at gmail.com>:
> Hi!
>
> I'm trying to compile WRF 3.2.1 on CentOS 5.5 (netcdf packages from rep) and
> get following error after ./configure:
> ----
> grep: /usr/include/netcdf.inc: No such file or directory
> ----
> NETCDF environment variable is set to "/usr", so as I understand WRF expect
> includes to be in "${NETCDF}/include" etc.
>
> Actually grep is right, there is no such file "/usr/include/netcdf.inc",
> NetCDF includes are located in "/usr/include/netcdf-3/" and libraries are in
> "/usr/lib64".
>
> The question is: is it possible to set separate paths for NetCDF includes
> and libraries? For example, Jasper uses $JASPERINC and $JASPERLIB variables
> and I think it'll be nice to work with NetCDF in the same way.
>
> Thanks.
>
> --
> Best regards,
> Dmitry Vinokurov
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>

From wrf at nusculus.com  Tue Feb 15 11:05:28 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Tue, 15 Feb 2011 11:05:28 -0700
Subject: [Wrf-users] NetCDF paths
In-Reply-To: <AANLkTikjK1U-OSSHGV41r5cw-v9uLf2LO0cs5cdiiW83@mail.gmail.com>
References: <AANLkTikjK1U-OSSHGV41r5cw-v9uLf2LO0cs5cdiiW83@mail.gmail.com>
Message-ID: <AANLkTinrepenrtFb5r0+DR2AA6iReuaKBZ0_h2yn5_V1@mail.gmail.com>

Hi,

Perhaps this would work (or not):

Create your own NetCDF directory and simply have links, with the proper
names that point to the include and library directories that have the wrong
names. Then have $NETCDF point to your directory.

mkdir myNetcdf
cd myNetcdf
ln -s /usr/include/netcdf-3/ include
ln -s /usr/lib64 lib
export NETCDF=`pwd`

If it works, perhaps you could reply to the group. It seems like a problems
others might encounter. Otherwise, folks have to compile their own NetCDF
libraries just to get the correct directory structure. If it doesn't work -
sorry 'bout that.

Kevin

On Sat, Feb 12, 2011 at 4:15 AM, Dmitry Vinokurov <df6.626 at gmail.com> wrote:

> Hi!
>
> I'm trying to compile WRF 3.2.1 on CentOS 5.5 (netcdf packages from rep)
> and get following error after ./configure:
> ----
> grep: /usr/include/netcdf.inc: No such file or directory
> ----
> NETCDF environment variable is set to "/usr", so as I understand WRF expect
> includes to be in "${NETCDF}/include" etc.
>
> Actually grep is right, there is no such file "/usr/include/netcdf.inc",
> NetCDF includes are located in "/usr/include/netcdf-3/" and libraries are in
> "/usr/lib64".
>
> The question is: is it possible to set separate paths for NetCDF includes
> and libraries? For example, Jasper uses $JASPERINC and $JASPERLIB variables
> and I think it'll be nice to work with NetCDF in the same way.
>
> Thanks.
>
> --
> Best regards,
> Dmitry Vinokurov
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From kganbour at yahoo.com  Wed Feb 16 03:25:57 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Wed, 16 Feb 2011 02:25:57 -0800 (PST)
Subject: [Wrf-users] [WRF-users] data for my domain
Message-ID: <449815.85099.qm@web46312.mail.sp1.yahoo.com>

Dear all:

I would like to run WRF with real data.
I tried to download from site of http://polar.... and ncep.....but there are many files and I downloaded files but they were very large mab be 400MB.
Please If you know the best site to get data and If possible to get this data only on my domain,tell me


best regards


Khaled



      
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From ahsanshah01 at gmail.com  Thu Feb 17 20:23:19 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Fri, 18 Feb 2011 08:23:19 +0500
Subject: [Wrf-users] Wrf-users Digest, Vol 78, Issue 17
In-Reply-To: <mailman.11.1297969204.9681.wrf-users@ucar.edu>
References: <mailman.11.1297969204.9681.wrf-users@ucar.edu>
Message-ID: <AANLkTimN6xOt6PkZM5AgOXK0+moYWwNbTZ8kQnfrgx4n@mail.gmail.com>

Try this

http://nomad3.ncep.noaa.gov/
<http://nomad3.ncep.noaa.gov/>
On Fri, Feb 18, 2011 at 12:00 AM, <wrf-users-request at ucar.edu> wrote:

> Send Wrf-users mailing list submissions to
>        wrf-users at ucar.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
>        http://mailman.ucar.edu/mailman/listinfo/wrf-users
> or, via email, send a message with subject or body 'help' to
>        wrf-users-request at ucar.edu
>
> You can reach the person managing the list at
>        wrf-users-owner at ucar.edu
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Wrf-users digest..."
>
>
> Today's Topics:
>
>   1. [WRF-users] data for my domain (Khaled Ganbour)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 16 Feb 2011 02:25:57 -0800 (PST)
> From: Khaled Ganbour <kganbour at yahoo.com>
> Subject: [Wrf-users] [WRF-users] data for my domain
> To: wrf-users at ucar.edu
> Message-ID: <449815.85099.qm at web46312.mail.sp1.yahoo.com>
> Content-Type: text/plain; charset="us-ascii"
>
> Dear all:
>
> I would like to run WRF with real data.
> I tried to download from site of http://polar.... and ncep.....but there
> are many files and I downloaded files but they were very large mab be 400MB.
> Please If you know the best site to get data and If possible to get this
> data only on my domain,tell me
>
>
> best regards
>
>
> Khaled
>
>
>
>
> -------------- next part --------------
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> http://mailman.ucar.edu/pipermail/wrf-users/attachments/20110216/85752e7c/attachment-0001.html
>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 78, Issue 17
> *****************************************
>



-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From jonathan.case-1 at nasa.gov  Fri Feb 18 12:01:46 2011
From: jonathan.case-1 at nasa.gov (Case, Jonathan (MSFC-VP61)[ENSCO INC])
Date: Fri, 18 Feb 2011 13:01:46 -0600
Subject: [Wrf-users] WRF-NMM mis-handling of SEAICE for small lakes
In-Reply-To: <4D5EB695.1060002@noaa.gov>
References: <4D5EB695.1060002@noaa.gov>
Message-ID: <C1333A631BF21841864F141194ED3D4A1A84167394@NDMSSCC02.ndc.nasa.gov>

Hello Dave/All,

Here is just a quick point of clarification on how the WRF-NMM incorporates sea ice into the initial condition for version 3.1.1.   Upon looking at the real_nmm code, I realized that the WRF-NMM initialization routine does NOT allow the user to set any sea ice based on input skin temperature thresholds.   The only way the WRF-NMM can initialize ice is by reading in a SEAICE grid from an external GRIB2 file (e.g. NAM or SPoRT's Great Lakes SEAICE via the icegl option in the EMS).

As a result, smaller water bodies in Canada and the Northeast U.S. are left as open water and assigned unrealistically cold water temperatures well below freezing in high-resolution NMM runs.   I have not confirmed whether this has been fixed in WRF v3.2, but in case it hasn't been fixed, I have CC'd the wrfhelp and wrf-users forum email lists , as well as Bob Rozumalski to the reply.

Best regards,
Jonathan Case
(NASA SPoRT Center)


From: Dave Radell [mailto:David.Radell at noaa.gov]
Sent: Friday, February 18, 2011 12:13 PM
To: Michael Evans; Paul Sisson; Molthan, Andrew L. (MSFC-VP61); David Zaff; Robert LaPlante; Jeff Waldstreicher; Kenneth Johnson; Brian Miretzky; Joshua Watson; Fred Pierce; Christopher Mello; Chuck McGill; Ron Murphy; David Radell
Cc: Case, Jonathan (MSFC-VP61)[ENSCO INC]; Vasil Koleci
Subject: Update: Northeast WRF Ensemble

Hi All,

I figured I'd take this opportunity, while the winter weather is somewhat quieter, to give everyone an update on some recent WRF LES ensemble developments.

1. NMM Ice Cover Mask Issues

SSD discovered a problem with the SpORT ice mask used in the NMM core of the WRF-EMS. We noticed this last week during the Feb. 9-11 event in Buffalo's CWA, though the problem has likely persisted much longer.  Essentially, the SpORT ice mask in the NMM-WRF was supposed to be set by the SpORT SST product (if SST<273K, set the point to ice) , and that was not happening correctly.  So for each model run, the NMM would revert back to deriving ice cover from NAM skin temperatures which for last week's event covered most of Lake Ontario with ice---not very realistic.  So the SpORT group quickly came up with a fix that involved creating a separate ice mask (independent of the SST product) grib file for use in creating the initial WRF conditions.  We have tested this here with NMM runs, and it's working correctly, giving the proper lake ice cover.  Note that this did not affect those running the ARW core.  Here are the configuration options to check in your NMM configuration files to ensure that you're set up correctly for the SpORT SST and ice cover product:

To set up a run using both our SSTs (ftp://ftp.nsstc.org/outgoing/lafonta/sst/grib2/conus/) and the Great Lakes ice mask (ftp://ftp.nsstc.org/outgoing/lafonta/sst/grib2/great_lakes/) requires setting the following parameters in the conf/ems_auto/ems_autorun.conf file:
SFC = sstsport,icegl
BESTHR = sstsport (optional, for the diurnal matching of SSTs to model initialization hour)
If running the EMS manually, then the following options should be used in ems_prep (as a working example):
ems_prep --dslist namptile --sfc sstsport,icegl
Also, EMS users must be using at least EMS v3.1.1.5.1 for the "icegl" option to work.
A quick test of running 'ems_prep --dslist ' will reveal if the icegl option is available.

If you have questions on this, please let me know, and we'll coordinate with Andrew Molthan and Jon Case at SPoRT as appropriate.

2. BUFKIT Soundings

Ensemble soundings look to be generating regularly on the ER FTP server in \share\BTV\BUFKIT.  A quick check this morning has sounding data for the following locations: CHD, CLE, COLT, EON, ERI, GOU, HZY, KBGM, KBTV, KITH, KMSS, KSLK, KSYR, RME, STAR.  It appears CLE, BTV, and BGM are regularly providing their ensemble members for inclusion.

3. LES Ensemble Configurations

As promised and for those interested, I have posted the information I've received from you all on the individual ensemble members on the ER Local Model Wiki page at the address below.  If would to like to make changes or updates to these configurations, please feel free to edit away directly on the Wiki page.
https://collaborate.werh.noaa.gov/wiki/index.php/Great_Lakes_Ensemble_Configuration
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From yesubabu2006 at gmail.com  Thu Feb 17 19:33:48 2011
From: yesubabu2006 at gmail.com (V.YesuBabu)
Date: Fri, 18 Feb 2011 08:03:48 +0530
Subject: [Wrf-users] "Re: Contents of Wrf-users digest Vol 78, Issue 17
Message-ID: <AANLkTikueTfNMF1qTEZSZ5vEkpekeDDqgKK_SOUWs5xU@mail.gmail.com>

Dear Khaled,
You can get input global data for WRF  from
http://nomads.ncdc.noaa.gov/data.php?name=access#hires_weather_datasets
or you can refer to
http://www.mmm.ucar.edu/wrf/users/download/free_data.html to get free data
to initialize WRF code.




On 18 February 2011 00:30, <wrf-users-request at ucar.edu> wrote:

> Send Wrf-users mailing list submissions to
>        wrf-users at ucar.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
>        http://mailman.ucar.edu/mailman/listinfo/wrf-users
> or, via email, send a message with subject or body 'help' to
>        wrf-users-request at ucar.edu
>
> You can reach the person managing the list at
>        wrf-users-owner at ucar.edu
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Wrf-users digest..."
>
>
> Today's Topics:
>
>   1. [WRF-users] data for my domain (Khaled Ganbour)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 16 Feb 2011 02:25:57 -0800 (PST)
> From: Khaled Ganbour <kganbour at yahoo.com>
> Subject: [Wrf-users] [WRF-users] data for my domain
> To: wrf-users at ucar.edu
> Message-ID: <449815.85099.qm at web46312.mail.sp1.yahoo.com>
> Content-Type: text/plain; charset="us-ascii"
>
> Dear all:
>
> I would like to run WRF with real data.
> I tried to download from site of http://polar.... and ncep.....but there
> are many files and I downloaded files but they were very large mab be 400MB.
> Please If you know the best site to get data and If possible to get this
> data only on my domain,tell me
>
>
> best regards
>
>
> Khaled
>
>
>
>
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL:
> http://mailman.ucar.edu/pipermail/wrf-users/attachments/20110216/85752e7c/attachment-0001.html
>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 78, Issue 17
> *****************************************
>



-- 
***********************************
V.Yesubabu, Project Engineer,
CAS/SECG,C-DAC,Main Building,
Pune University,Ganeshkhind,Pune.
Phone :020-25704226
Cell: 07276298863
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From ahsanshah01 at gmail.com  Fri Feb 18 20:29:22 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Sat, 19 Feb 2011 08:29:22 +0500
Subject: [Wrf-users] Restart Run
Message-ID: <AANLkTi=X0DvO+GzC26D92BMs8_8r8gbMAAZbXdj=iHZ2@mail.gmail.com>

Dear,

When we restart WRF from a specific time using a restart file a new wrf
output file is made rather then writing the output to the previously saved
file. Is there any was that the wrf output file remain the same although we
restart it.

-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From ebeigi3 at tigers.lsu.edu  Sat Feb 19 23:04:14 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Sun, 20 Feb 2011 00:04:14 -0600
Subject: [Wrf-users] input and output data
Message-ID: <AANLkTinZRJ3m5YyTDPh8ixdLwvajRJLQpc=q6z4KDWcD@mail.gmail.com>

I am PhD student at LSU, and I want to dynamically  downcale coarse
resolution data of GCM and then evaluate the climate change effect on
hyrologic cycle( temperature, precipitation, ...) . Is there avilabe input
data for WRF to run in Lousiana state? i am not familiar with input and
output data of WRF software.

I am looking forward to hearing form you.

Best Regards



-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From hedde.cea at gmail.com  Mon Feb 21 08:36:12 2011
From: hedde.cea at gmail.com (Thierry HEDDE)
Date: Mon, 21 Feb 2011 16:36:12 +0100
Subject: [Wrf-users] wrfcamx Compiling
In-Reply-To: <950937.80965.qm@web161216.mail.bf1.yahoo.com>
References: <950937.80965.qm@web161216.mail.bf1.yahoo.com>
Message-ID: <AANLkTiko_7U3e8ryhLXwrfqyexsRTN=dFbmyg84S1sqa@mail.gmail.com>

Hi

make -check doesn't compile, it is just a checking you can run after
compiling.

you have to run "make" alone to compile your code.

If you still have the error msg, you have to check for netCDF library
directory. may be you should add netcdf path in your configure or add a
NETCDF environnement variable.
type ./configure --help

bye

2011/2/15 Hamed Sharifi <hamed319 at yahoo.com>

> Dear All,
> I use "make --check" command to compile the wrfcamx program, but I got this
> error:
>
> ld: cannot find -lnetcdf
>
> Any suggestion?
> Thanks in advance,
> Hamed
> ------------------------------
> Need Mail bonding?
> Go to the Yahoo! Mail Q&A<http://answers.yahoo.com/dir/index;_ylc=X3oDMTFvbGNhMGE3BF9TAzM5NjU0NTEwOARfcwMzOTY1NDUxMDMEc2VjA21haWxfdGFnbGluZQRzbGsDbWFpbF90YWcx?link=ask&sid=396546091>for great
> tips from Yahoo! Answers<http://answers.yahoo.com/dir/index;_ylc=X3oDMTFvbGNhMGE3BF9TAzM5NjU0NTEwOARfcwMzOTY1NDUxMDMEc2VjA21haWxfdGFnbGluZQRzbGsDbWFpbF90YWcx?link=ask&sid=396546091>users.
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
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>
>


-- 
Thierry HEDDE
Laboratoire de Mod?lisation des Transferts dans l'Environnement
CEA/CADARACHE
DEN/DTN/SMTM/LMTE
B?t. 307 Pi?ce 9
13108 ST PAUL LEZ DURANCE CEDEX
FRANCE
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From hedde.cea at gmail.com  Mon Feb 21 08:45:07 2011
From: hedde.cea at gmail.com (Thierry HEDDE)
Date: Mon, 21 Feb 2011 16:45:07 +0100
Subject: [Wrf-users] WRFV3.2 compilation Error
In-Reply-To: <AANLkTi=pYy7ZvOt740Tej6vd+VvNZUEzeiN3k3nfAfkR@mail.gmail.com>
References: <69822787.20110208204759@rambler.ru>
	<AANLkTi=pYy7ZvOt740Tej6vd+VvNZUEzeiN3k3nfAfkR@mail.gmail.com>
Message-ID: <AANLkTi=dRNawuGhrfpC-otKSTKLXEHufZvFE1XaOZ8Hn@mail.gmail.com>

I am using this version of gcc:
gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)

I'm waiting for an update from my support. I tell you if it works as soon as
I can....

cordially

2011/2/8 Dmitry N. Mikushin <maemarcus at gmail.com>

> Mostamandy,
>
> At least one of your errors
>
>     character (DateStrLen), dimension(:),allocatable  :: Times(:)
>                                                     1
> Error: Attribute at (1) is not allowed in a TYPE definition
>
> can't be reproduced with gfortran 4.4.3. What version of gfortran are you
> using?
>
> 8 ??????? 2011 ?. 20:47 ???????????? Mostamandy Soleiman
> <soleiman at rambler.ru> ???????:
> > Hello, Wrf-users.
> >
> > I tried  to compile WRF V3.2.1 with gfortran + gcc with but
> > unfortunately i haven't got success . I attached the compile.log and
> > configure.wps
> > could someone help me !what is the problem.
> >
> > thanks in advance !
> >
> >
> >
> >
> > --
> > ? ?????????,
> >  Mostamandy                          mailto:soleiman at rambler.ru
> > _______________________________________________
> > Wrf-users mailing list
> > Wrf-users at ucar.edu
> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
> >
> >
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 
Thierry HEDDE
Laboratoire de Mod?lisation des Transferts dans l'Environnement
CEA/CADARACHE
DEN/DTN/SMTM/LMTE
B?t. 307 Pi?ce 9
13108 ST PAUL LEZ DURANCE CEDEX
FRANCE
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From doyle at cima.fcen.uba.ar  Tue Feb 22 10:20:55 2011
From: doyle at cima.fcen.uba.ar (doyle at cima.fcen.uba.ar)
Date: Tue, 22 Feb 2011 14:20:55 -0300 (ART)
Subject: [Wrf-users] 2m temperature error
Message-ID: <38745.157.92.4.71.1298395255.squirrel@www.cima.fcen.uba.ar>

Hi everyone

I am running WRF-ARW on a linux cluster with 16 processors over all south
America with the following physics in the namelist

&physics
 mp_physics                          = 5,     3,     3,
 ra_lw_physics                       = 99,     1,     1,
 ra_sw_physics                       = 99,     1,     1,
 radt                                = 50,    30,    30,
 sf_sfclay_physics                   = 2,     1,     1,
 sf_surface_physics                  = 2,     2,     2,
 bl_pbl_physics                      = 2,     1,     1,
 bldt                                = 0,     0,     0,
 cu_physics                          = 2,     1,     0,
 cudt                                = 5,     5,     5,
 isfflx                              = 1,
 ifsnow                              = 1,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 4,
 sf_urban_physics                    = 0,     0,     0,
 maxiens                             = 1,
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,


When I look at the 2m temperature field (first figure in the pdf file) it
seems to behave with horizontal stripes, far from reality. When I change
 ra_lw_physics and  ra_sw_physics to 1 the field is close to reality
(figure 2). The same occurs when changing just one ra_lw_physics or
ra_sw_physics  (figures 3 and 4). I tried running ARW V3.2.1 and 3.0 and
find the same problem, in the last case with values vary far from
reality.

Has anyone run using this physics configuration? Any idea why this
combination is not working?

Thanks a lot

Moira Doyle
Dpt Atmospheric and Oceanic Sciences
Univ. Buenos Aires



-- 
Este mensaje ha sido analizado por el Servidor de Mail de CIMA
en busca de virus y otros contenidos peligrosos,
y se considera que esta limpio.


-- 
Este mensaje ha sido analizado por el Servidor de Mail de CIMA
en busca de virus y otros contenidos peligrosos,
y se considera que esta limpio.

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From ahsanshah01 at gmail.com  Tue Feb 22 21:02:51 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Wed, 23 Feb 2011 09:02:51 +0500
Subject: [Wrf-users] Running wrf parallel problem
Message-ID: <AANLkTimXoaNpRkN9xpEWKWJOYPhw1HCQjsPRV_V+Tyab@mail.gmail.com>

Hello,

 I an stuck in a problem that is regarding the running for WRFV 3.2.1. I get
the following error while running with mpirun. Any help would be highly
appreciated.


*[pmdtest at pmd02 em_real]$ mpirun -np 4 wrf.exe
starting wrf task 0 of 4
starting wrf task 1 of 4
starting wrf task 3 of 4
starting wrf task 2 of 4
--------------------------------------------------------------------------
mpirun noticed that process rank 3 with PID 6044 on node
pmd02.pakmet.com exited
on signal 11 (Segmentation fault).**
*

Any help would be highly appreciated.
-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From nbon0004 at um.edu.mt  Wed Feb 23 02:19:28 2011
From: nbon0004 at um.edu.mt (Norbert Bonnici)
Date: Wed, 23 Feb 2011 10:19:28 +0100
Subject: [Wrf-users] forecasting procedure
Message-ID: <AANLkTimLZcg7VbmfwLJRX+yFjmMfePG=DU5mRco7gUBG@mail.gmail.com>

Dear all,
I would like to know how to set up a simulations which involves a
forecast. Till now all I managed to do is run a simulation from
previous data.
Thanks,
-- 
Norbert Bonnici

From tnquanghuy at gmail.com  Wed Feb 23 08:54:01 2011
From: tnquanghuy at gmail.com (Huy Tran)
Date: Wed, 23 Feb 2011 06:54:01 -0900
Subject: [Wrf-users] WRF one-way nesting error
Message-ID: <4D652D99.20106@gmail.com>

Good morning everyone,

I'm currently having trouble with running one-way nesting in WRF. The 
domain configuration includes 1 coarse domain of 300x400 grid-cells x 
12km (domain 1)  and 1 fine domain of 201x201 grid-cells x 4km (domain 
2). The time steps are 36s and 12s for the domain 1 and domain 2, 
respectively. Frame output is every 1hour. Simulations are conducted 
with 8 processors machine.

I finished running domain 1 successfully and the frame output is every 
1hour. Then  I follow the instruction of running one-way nesting with 
ndown (http://www.mmm.ucar.edu/wrf/users/wrfv2/runwrf.html#oneway). I 
finished all the steps and got the wrfinput_d02 and wrfbdy_d02 for the 
domain 2 with ndown, and renamed them to wrfinput_d01 and wrfbdy_d01, 
respectively. I took a look into these files and verified that all 
timestep and domain configuration are correctly.

But when I run wrf.exe, it just finished upto 5 time steps and stopped 
there with the error
"APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)"
and there is no error recorded in the rsl.error.* files.

Note that if I run the domain 2 without ndown (i.e. generated the 
wrfinput_d01 and wrfbdy_d01 with real.exe and go no further with ndown), 
wrf.exe run flawlessly without any error.

I attach the rsl.error.0000, the namelist.input of domain 1 and domain 2 
for your more information. Your suggestions are highly appreciated.

Thanks.

Huy
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From drostkier at yahoo.com  Thu Feb 24 05:35:21 2011
From: drostkier at yahoo.com (Dorita Rostkier-Edelstein)
Date: Thu, 24 Feb 2011 04:35:21 -0800 (PST)
Subject: [Wrf-users] WRF and stratus
Message-ID: <27627.27479.qm@web113104.mail.gq1.yahoo.com>

Hi,

I am looking for publications on this subject. Sensitivity to parameterizations, 
etc.
I appreciate getting any references.

Thanks,

Dorita
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From FLiu at azmag.gov  Wed Feb 23 14:57:34 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Wed, 23 Feb 2011 21:57:34 +0000
Subject: [Wrf-users] WRF one-way nesting error
In-Reply-To: <4D652D99.20106@gmail.com>
References: <4D652D99.20106@gmail.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C2266359B@mag9006>

Hi Huy,
Switch off microphysics and set mp_physics = 0 because ndown.exe does not work with mp_physics.
Hope this is the solution to your problem.
Feng

-----Original Message-----
From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Huy Tran
Sent: Wednesday, February 23, 2011 8:54 AM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF one-way nesting error

Good morning everyone,

I'm currently having trouble with running one-way nesting in WRF. The domain configuration includes 1 coarse domain of 300x400 grid-cells x 12km (domain 1)  and 1 fine domain of 201x201 grid-cells x 4km (domain 2). The time steps are 36s and 12s for the domain 1 and domain 2, respectively. Frame output is every 1hour. Simulations are conducted with 8 processors machine.

I finished running domain 1 successfully and the frame output is every 1hour. Then  I follow the instruction of running one-way nesting with ndown (http://www.mmm.ucar.edu/wrf/users/wrfv2/runwrf.html#oneway). I finished all the steps and got the wrfinput_d02 and wrfbdy_d02 for the domain 2 with ndown, and renamed them to wrfinput_d01 and wrfbdy_d01, respectively. I took a look into these files and verified that all timestep and domain configuration are correctly.

But when I run wrf.exe, it just finished upto 5 time steps and stopped there with the error "APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)"
and there is no error recorded in the rsl.error.* files.

Note that if I run the domain 2 without ndown (i.e. generated the
wrfinput_d01 and wrfbdy_d01 with real.exe and go no further with ndown), wrf.exe run flawlessly without any error.

I attach the rsl.error.0000, the namelist.input of domain 1 and domain 2 for your more information. Your suggestions are highly appreciated.

Thanks.

Huy

From FLiu at azmag.gov  Wed Feb 23 15:26:20 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Wed, 23 Feb 2011 22:26:20 +0000
Subject: [Wrf-users] 2m temperature error
In-Reply-To: <38745.157.92.4.71.1298395255.squirrel@www.cima.fcen.uba.ar>
References: <38745.157.92.4.71.1298395255.squirrel@www.cima.fcen.uba.ar>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C22663629@mag9006>

Hi Doyle,
You have taken cloud effect to the optical depth in radiation (icloud = 1) which only works for ra_sw_physics =1 and ra_lw_physics = 1 ). It makes no sense to compare the results if you take other long wave and short wave radiation schemes. Please refer to Page 5-42 in the USER's GUIDE. Thanks.
Feng
  

-----Original Message-----
From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of doyle at cima.fcen.uba.ar
Sent: Tuesday, February 22, 2011 10:21 AM
To: wrf-users at ucar.edu
Subject: [Wrf-users] 2m temperature error

Hi everyone

I am running WRF-ARW on a linux cluster with 16 processors over all south America with the following physics in the namelist

&physics
 mp_physics                          = 5,     3,     3,
 ra_lw_physics                       = 99,     1,     1,
 ra_sw_physics                       = 99,     1,     1,
 radt                                = 50,    30,    30,
 sf_sfclay_physics                   = 2,     1,     1,
 sf_surface_physics                  = 2,     2,     2,
 bl_pbl_physics                      = 2,     1,     1,
 bldt                                = 0,     0,     0,
 cu_physics                          = 2,     1,     0,
 cudt                                = 5,     5,     5,
 isfflx                              = 1,
 ifsnow                              = 1,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 4,
 sf_urban_physics                    = 0,     0,     0,
 maxiens                             = 1,
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,


When I look at the 2m temperature field (first figure in the pdf file) it seems to behave with horizontal stripes, far from reality. When I change  ra_lw_physics and  ra_sw_physics to 1 the field is close to reality (figure 2). The same occurs when changing just one ra_lw_physics or ra_sw_physics  (figures 3 and 4). I tried running ARW V3.2.1 and 3.0 and find the same problem, in the last case with values vary far from reality.

Has anyone run using this physics configuration? Any idea why this combination is not working?

Thanks a lot

Moira Doyle
Dpt Atmospheric and Oceanic Sciences
Univ. Buenos Aires



--
Este mensaje ha sido analizado por el Servidor de Mail de CIMA en busca de virus y otros contenidos peligrosos, y se considera que esta limpio.


-- 
Este mensaje ha sido analizado por el Servidor de Mail de CIMA
en busca de virus y otros contenidos peligrosos,
y se considera que esta limpio.


From kotroni at meteo.noa.gr  Tue Mar  1 01:38:44 2011
From: kotroni at meteo.noa.gr (Vassiliki Kotroni)
Date: Tue, 1 Mar 2011 10:38:44 +0200
Subject: [Wrf-users] WRF execution problem on amd processors + intel
Message-ID: <002801cbd7ec$136968c0$3a3c3a40$@noa.gr>

Dear colleagues

we have been successfully running WRF on our AMD-Opteron cluster with
pgfortran and mpi.

We are trying to switch to ifortran and we have the following problem:

(we tested both in aour amd-opteron cluster and on a 6-core amd-phenom)

we successfully compiled mpich2, netcdf and  wrf with ifort

and wrf crashes just after writing the 00 hour wrfout and before giving the
first timestep.

Has anybody else encountered the same problem?

 

On the other hand on the same processors we have successfully compiled

mm5 with ifort and we are running it without any problem.

 

We would appreciate any help on the subject

best regards

Vasso 

 

----------------------------------------------------------------------------
--------

Dr. Vassiliki KOTRONI

Institute of Environmental Research

National Observatory of Athens

Lofos Koufou, P. Pendeli, GR-15236

Athens, Greece

Tel: +30 2 10  8109126

Fax: +30 2 10 8103236

Daily weather forecasts at:

www.noa.gr/forecast (in english)

www.meteo.gr       (in greek)

www.eurometeo.gr

 

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From df6.626 at gmail.com  Tue Mar  1 02:53:54 2011
From: df6.626 at gmail.com (Dmitry Vinokurov)
Date: Tue, 1 Mar 2011 14:53:54 +0500
Subject: [Wrf-users] NetCDF paths
In-Reply-To: <AANLkTinrepenrtFb5r0+DR2AA6iReuaKBZ0_h2yn5_V1@mail.gmail.com>
References: <AANLkTikjK1U-OSSHGV41r5cw-v9uLf2LO0cs5cdiiW83@mail.gmail.com>
	<AANLkTinrepenrtFb5r0+DR2AA6iReuaKBZ0_h2yn5_V1@mail.gmail.com>
Message-ID: <AANLkTi=KqA+JwZ_qfNhV=8EJkyTLr-YrkJ8fSHDTCehG@mail.gmail.com>

We were moving to another office, now I've returned to work on WRF
compiling.

Thanks all for tips. Seems like suggested solution with symlinks worked, I
don't get configure error anymore.

Anyway, I think using 2 environment variables for NetCDF will improve
portability and convenience. If sources and online tutorial will be fixed in
this way, new user will not waste time on searching error and googling. If
my reasoning are correct, maybe I should contact WRF developers?

2011/2/15 Kevin Matthew Nuss <wrf at nusculus.com>

> Hi,
>
> Perhaps this would work (or not):
>
> Create your own NetCDF directory and simply have links, with the proper
> names that point to the include and library directories that have the wrong
> names. Then have $NETCDF point to your directory.
>
> mkdir myNetcdf
> cd myNetcdf
> ln -s /usr/include/netcdf-3/ include
> ln -s /usr/lib64 lib
> export NETCDF=`pwd`
>
> If it works, perhaps you could reply to the group. It seems like a problems
> others might encounter. Otherwise, folks have to compile their own NetCDF
> libraries just to get the correct directory structure. If it doesn't work -
> sorry 'bout that.
>
> Kevin
>
> On Sat, Feb 12, 2011 at 4:15 AM, Dmitry Vinokurov <df6.626 at gmail.com>wrote:
>
>> Hi!
>>
>> I'm trying to compile WRF 3.2.1 on CentOS 5.5 (netcdf packages from rep)
>> and get following error after ./configure:
>> ----
>> grep: /usr/include/netcdf.inc: No such file or directory
>> ----
>> NETCDF environment variable is set to "/usr", so as I understand WRF
>> expect includes to be in "${NETCDF}/include" etc.
>>
>> Actually grep is right, there is no such file "/usr/include/netcdf.inc",
>> NetCDF includes are located in "/usr/include/netcdf-3/" and libraries are in
>> "/usr/lib64".
>>
>> The question is: is it possible to set separate paths for NetCDF includes
>> and libraries? For example, Jasper uses $JASPERINC and $JASPERLIB variables
>> and I think it'll be nice to work with NetCDF in the same way.
>>
>> Thanks.
>>
>> --
>> Best regards,
>> Dmitry Vinokurov
>>
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
>>
>
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From eric.kemp at nasa.gov  Mon Feb 28 11:08:51 2011
From: eric.kemp at nasa.gov (Kemp, Eric M. (GSFC-610.0)[NORTHROP GRUMMAN INFORMATION TECH])
Date: Mon, 28 Feb 2011 12:08:51 -0600
Subject: [Wrf-users] Bug in WRF 3.2.1 RSL_LITE library
Message-ID: <C9914EE3.1C43%Eric.Kemp@nasa.gov>


Dear wrfhelp:

I continue to investigate a problem I reported several months ago:  occasional CFL errors and/or crashes with identical initial conditions when running a particular domain.  While I have not found a solution to this problem, I have found a bug in the RSL_LITE library.

In WRFV3/external/RSL_LITE/c_code.c, function RSL_LITE_INIT_EXCH contains two local variables (nbytes_x_recv and nbytes_y_recv).  These variables are declared without initial values.  If the code is compiled with MPI support, these variables are assigned values within if blocks (i.e., under special conditions; in some cases the statements in the if blocks are not executed).  If RSL_LITE is compiled serially, then the if statements are removed by the preprocessor.   At the end of the function (near line 300), these variables are used to calculate xp_curs_recv and yp_curs_recv.

My bug patch:

Near line 229:

#ifndef STUBMPI
  MPI_Comm comm, *comm0, dummy_comm ;

  nbytes_x_recv = 0; /* Bug fix */
  nbytes_y_recv = 0; /* Bug fix */

  comm0 = &dummy_comm ;

Near line 295:

       buffer_for_proc ( xm , nbytes, RSL_SENDBUF ) ;
    }
  }
#else  /* Bug fix */
  nbytes_x_recv = 0; /* Bug fix */
  nbytes_y_recv = 0; /* Bug fix */
#endif
  yp_curs = 0 ; ym_curs = 0 ; xp_curs = 0 ; xm_curs = 0 ;

I found this bug using ifort 11.1.038 and the ?-check? compiler flag.

Cheers,

-Eric

--------------------------------------------------------------------
Eric M. Kemp                   Northrop Grumman Corporation
Meteorologist                  Information Systems
Civil Enterprise Solutions     Civil Systems Division

                               Goddard Space Flight Center
                               Mailstop 610.3
                               Greenbelt, MD 20771
                               Telephone   301-286-9768
                               Fax         301-286-1775
                               E-mail:     eric.kemp at nasa.gov
                               E-mail:     eric.kemp at ngc.com
--------------------------------------------------------------------


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From moudipascal at yahoo.fr  Wed Mar  2 06:21:42 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Wed, 2 Mar 2011 13:21:42 +0000 (GMT)
Subject: [Wrf-users] How can i attache my simulation to wrfhelp
Message-ID: <945851.47753.qm@web25107.mail.ukl.yahoo.com>

Dear all,
I am having troubles with gen_be generation (obtaining be.dat file). I would 
like  to upload my simulations (52 MB of space each). How can i do. I want 
wrfhelp to compile it so that they help me to fix the problem

 Pascal MOUDI IGRI

Ph-D Student at the 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52



      
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From geeta124 at hotmail.com  Thu Mar  3 03:57:30 2011
From: geeta124 at hotmail.com (Geeta Geeta)
Date: Thu, 3 Mar 2011 10:57:30 +0000
Subject: [Wrf-users] WRF 3.2 Model not running after 4hrs of Integration.
Message-ID: <BLU152-w4D3D9DC7BA60D09ABFAFE8AC30@phx.gbl>


Dear All, 
I am running WRF3.2 for 3 domains, at 27, 9 and 3kms.  After integrating for 4hours, the model  gives segmentation fault. and 
these directories are created and does not integrate beyond. 

bash-3.2$ ncdump -v Times wrfout_d01_2010-08-04_00:00:00
Times =
  "2010-08-04_00:00:00",
  "2010-08-04_01:00:00",
  "2010-08-04_02:00:00",
  "2010-08-04_03:00:00",
  "2010-08-04_04:00:00" ;
}

bash-3.2$ ncdump -v Times wrfout_d02_2010-08-04_00:00:00
Times =
  "2010-08-04_00:00:00",
  "2010-08-04_01:00:00",
  "2010-08-04_02:00:00",
  "2010-08-04_03:00:00",
  "2010-08-04_04:00:00" ;

bash-3.2$ ncdump -v Times wrfout_d03_2010-08-04_00:00:00
Times =
  "2010-08-04_00:00:00",
  "2010-08-04_01:00:00",
  "2010-08-04_02:00:00",
  "2010-08-04_03:00:00",
  "2010-08-04_04:00:00" ;

After integrating for 4hours, the model  gives segmentation fault. and these directories are created and does not integrate beyond. 
drwxr-xr-x    2            256 Mar 03 04:20 coredir.5
drwxr-xr-x    2            256 Mar 03 04:20 coredir.3
drwxr-xr-x    2            256 Mar 03 04:20 coredir.2
drwxr-xr-x    2            256 Mar 03 04:20 coredir.1

Kindly help. The namelist.input file is also attached for reference. 

Geeta 

 		 	   		  
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From nbon0004 at um.edu.mt  Thu Mar  3 04:39:12 2011
From: nbon0004 at um.edu.mt (Norbert Bonnici)
Date: Thu, 3 Mar 2011 12:39:12 +0100
Subject: [Wrf-users] RSL CTL error
Message-ID: <AANLkTim8W9pk11PF23_u72yjNGDg4okx+gs+NYSg96HT@mail.gmail.com>

Dear all,
I made a domain over Australia to simulate the Yasi tropical storm
(1-2Feb2011) When I ran the simulation with this namelist.input I got
this error. (files are attached)
Can someone help me please.
Regards
-- 
Norbert Bonnici
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From jagabandhu at gmail.com  Thu Mar  3 22:17:39 2011
From: jagabandhu at gmail.com (jagabandhu panda)
Date: Fri, 4 Mar 2011 13:17:39 +0800
Subject: [Wrf-users] problem with arwpost
In-Reply-To: <FD8CAD0D6C5D8E44B65715A7DB706A8318C99092DA@EXCHANGE32.staff.main.ntu.edu.sg>
References: <FD8CAD0D6C5D8E44B65715A7DB706A8318C99092DA@EXCHANGE32.staff.main.ntu.edu.sg>
Message-ID: <AANLkTikbnj4mCNXX6tPVHVx_c-AuFaOAnpjn2zM1Cd7H@mail.gmail.com>

Hi



     I am trying to compute cape, cin and mcape through ARWpost (these are
calculated through the fortran code called module_calc_cape.f90 which is
provided in ARWpost). These variables are diagnostics through this package
and are expected to be diagnosed if the package is compiled successfully.
However, I am not able to do so even though I am successfult in compiling
the package successfully and correct in specifying the variables in the
namelist. Some other variables calculated through module_calc_dbz.f90 are
also not being diagnosed.



Even I tried the latest version of ARWpost uploaded in the website
yesterday! However, it is the same! I am specifying the things properly
through the namelist. However, I see segmentation fault when I include cape
or mcape or cin or dbz.



Even if I increase the debug level, still it is not coming. I tried in
various directions actually. But, I am not successful in this!



I am not sure what to do now! I will really be happy and thankful if I get
some help in this direction.



Thanks in advance

~Jagabandhu
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From geeta124 at hotmail.com  Thu Mar  3 21:32:04 2011
From: geeta124 at hotmail.com (Geeta Geeta)
Date: Fri, 4 Mar 2011 04:32:04 +0000
Subject: [Wrf-users] WRF 3.2 Model not running after 4hrs of Integration.
In-Reply-To: <4D703059.7000203@ucar.edu>
References: <BLU152-w4D3D9DC7BA60D09ABFAFE8AC30@phx.gbl>,
	<4D703059.7000203@ucar.edu>
Message-ID: <BLU152-w39AE089447A86098136EB88AC20@phx.gbl>


Dear Sir, 
Thanks for the reply. I am running WRf 3.2 for the 3 domains 27, 9 and 3 km for the 48hrs Forecast on the IBM P570 Machine. The Operating system is AIX5.3 and the code is compiled using xlf with POE in place. 
I had given the command bash$ time poe ../wrf.exe -procs 8. 

1. The model gave segmentation fault after 4hrs of Integration. I also plotted the Model forecast for 2nd and 3rd hour at 27km resolution (Domain 1) So it showed me some data being plotted 
But when I tried to plot the output for the 2nd and 3rd domain, IT says ENTIRE GRID UNDEFINED. Kindly suggest.  

2. >>>What data I have used ??
I am using the .grib2 files as Initial and BC taken from ftp://ftpprd.ncep.noaa.gov.in at 1x1 degree resolution.  

3. >>>What is the error message in your output file? Did you find any CFL
    violation?  Your namelist.input looks fine. Please send us error messages in
    your run.
I am attatching the rsl.error* and the rsl.out* files, namelist.input and namelist.wps files. It seems to me that there is no CFL violation. 

Thanks. 
geeta



Date: Thu, 3 Mar 2011 17:20:41 -0700
From: wrfhelp at ucar.edu
To: geeta124 at hotmail.com
Subject: Re: WRF 3.2 Model not running after 4hrs of Integration.



  


    
  
  
    Geeta,

    

    What is the error message in your output file? Did you find any CFL
    violation? 

    

    Your namelist.input looks fine. Please send us error messages in
    your run. 

    

    

    On 3/3/2011 3:57 AM, Geeta Geeta wrote:
    
      
      Dear All, 

      I am running WRF3.2 for 3 domains, at 27, 9 and 3kms.  After
      integrating for 4hours, the model  gives segmentation fault. and
      these directories are created and does not integrate beyond. 

      

      bash-3.2$ ncdump -v Times wrfout_d01_2010-08-04_00:00:00

      Times =

        "2010-08-04_00:00:00",

        "2010-08-04_01:00:00",

        "2010-08-04_02:00:00",

        "2010-08-04_03:00:00",

        "2010-08-04_04:00:00" ;

      }

      

      bash-3.2$ ncdump -v Times wrfout_d02_2010-08-04_00:00:00

      Times =

        "2010-08-04_00:00:00",

        "2010-08-04_01:00:00",

        "2010-08-04_02:00:00",

        "2010-08-04_03:00:00",

        "2010-08-04_04:00:00" ;

      

      bash-3.2$ ncdump -v Times wrfout_d03_2010-08-04_00:00:00

      Times =

        "2010-08-04_00:00:00",

        "2010-08-04_01:00:00",

        "2010-08-04_02:00:00",

        "2010-08-04_03:00:00",

        "2010-08-04_04:00:00" ;

      

      After integrating for 4hours, the model  gives segmentation fault.
      and these directories are created and does not integrate beyond. 

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.5

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.3

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.2

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.1

      

      Kindly help. The namelist.input file is also attached for
      reference. 

      

      Geeta 

      

    
    
 		 	   		  
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From gorangas at gmail.com  Fri Mar  4 07:21:39 2011
From: gorangas at gmail.com (Goran Gasparac)
Date: Fri, 4 Mar 2011 15:21:39 +0100
Subject: [Wrf-users] wrf exe stops without error
Message-ID: <AANLkTim0_cgS4JyK=8SyJjbzCCzrvqO5wydBuTi1ggaL@mail.gmail.com>

Dear users,

how can I find out type of an error beside from rsl.* files?
Mine WRF stops after few second, real and all preprocessing was successful,
but wrf.exe stops and doesn't give any error in rsl.* files.

Thanks,
Regards,
Goran

*rsl.errror*:
*
taskid: 0 hostname:
 Quilting with   1 groups of   0 I/O tasks.
 Namelist dfi_control not found in namelist.input. Using registry defaults
for variables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variables in fire
  Ntasks in X             1 , ntasks in Y             1
 WRF V3.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde             1          102            1           95
  ims,ime,jms,jme            -4          107           -4          100
  ips,ipe,jps,jpe             1          102            1           95
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
   med_initialdata_input: calling input_model_input
 INPUT LandUse = "USGS"
 LANDUSE TYPE = "USGS" FOUND           33  CATEGORIES            2  SEASONS
  WATER CATEGORY =            16  SNOW CATEGORY =            24
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
  *************************************
  Nesting domain
  ids,ide,jds,jde             1          139            1          130
  ims,ime,jms,jme            -4          144           -4          135
  ips,ipe,jps,jpe             1          139            1          130
  INTERMEDIATE domain
  ids,ide,jds,jde            29           80           23           71
  ims,ime,jms,jme            24           85           18           76
  ips,ipe,jps,jpe            27           82           21           73
  *************************************
 d01 2011-03-02_00:00:00 *** Initializing nest domain # 2 by horizontally
interpolating parent domain # 1. ***
 INPUT LandUse = "USGS"
 LANDUSE TYPE = "USGS" FOUND           33  CATEGORIES            2  SEASONS
  WATER CATEGORY =            16  SNOW CATEGORY =            24
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 INPUT LandUse = "USGS"
 LANDUSE TYPE = "USGS" FOUND           33  CATEGORIES            2  SEASONS
  WATER CATEGORY =            16  SNOW CATEGORY =            24
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
Timing for Writing wrfout_d01_2011-03-02_00:00:00 for domain        1:
0.30316 elapsed seconds.
Timing for processing lateral boundary for domain        1:    0.01309
elapsed seconds.
 WRF NUMBER OF TILES =   1*
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From tnquanghuy at gmail.com  Thu Mar  3 12:52:24 2011
From: tnquanghuy at gmail.com (Huy Tran)
Date: Thu, 03 Mar 2011 10:52:24 -0900
Subject: [Wrf-users] WRF 3.2 Model not running after 4hrs of Integration.
In-Reply-To: <BLU152-w4D3D9DC7BA60D09ABFAFE8AC30@phx.gbl>
References: <BLU152-w4D3D9DC7BA60D09ABFAFE8AC30@phx.gbl>
Message-ID: <4D6FF178.80506@gmail.com>

Hi Geeta,

I would suggest you to turn off the feedback option (feedback = 0 in the 
&domains) to see if this can solve the problem. This option may or may 
not be important depends on your study.

Otherwise, it's quite difficult to tell the reason for the segmentation 
fault. You might want to acquire more memory to run wrf, and/or optimize 
the fortran compiler and mpi with appropriate flag settings. The latter 
option highly depends on your system and the compiler you chose.

Hope this can help.

Huy


On 3/3/2011 1:57 AM, Geeta Geeta wrote:
> Dear All,
> I am running WRF3.2 for 3 domains, at 27, 9 and 3kms.  After 
> integrating for 4hours, the model  gives segmentation fault. and these 
> directories are created and does not integrate beyond.
>
> bash-3.2$ ncdump -v Times wrfout_d01_2010-08-04_00:00:00
> Times =
>   "2010-08-04_00:00:00",
>   "2010-08-04_01:00:00",
>   "2010-08-04_02:00:00",
>   "2010-08-04_03:00:00",
>   "2010-08-04_04:00:00" ;
> }
>
> bash-3.2$ ncdump -v Times wrfout_d02_2010-08-04_00:00:00
> Times =
>   "2010-08-04_00:00:00",
>   "2010-08-04_01:00:00",
>   "2010-08-04_02:00:00",
>   "2010-08-04_03:00:00",
>   "2010-08-04_04:00:00" ;
>
> bash-3.2$ ncdump -v Times wrfout_d03_2010-08-04_00:00:00
> Times =
>   "2010-08-04_00:00:00",
>   "2010-08-04_01:00:00",
>   "2010-08-04_02:00:00",
>   "2010-08-04_03:00:00",
>   "2010-08-04_04:00:00" ;
>
> After integrating for 4hours, the model  gives segmentation fault. and 
> these directories are created and does not integrate beyond.
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.5
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.3
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.2
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.1
>
> Kindly help. The namelist.input file is also attached for reference.
>
> Geeta
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

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From hamed319 at yahoo.com  Sat Mar  5 07:02:00 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Sat, 5 Mar 2011 06:02:00 -0800 (PST)
Subject: [Wrf-users] LAMBERT 2 UTM convertor
Message-ID: <73610.63440.qm@web161206.mail.bf1.yahoo.com>

Hi All,

Does anyone know about a free software for converting LAMBERT parameters to UTM ones.

Thanks in advance,
Hamed



      
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From hedde.cea at gmail.com  Mon Mar  7 01:47:44 2011
From: hedde.cea at gmail.com (Thierry HEDDE)
Date: Mon, 7 Mar 2011 09:47:44 +0100
Subject: [Wrf-users] RSL CTL error
In-Reply-To: <AANLkTim8W9pk11PF23_u72yjNGDg4okx+gs+NYSg96HT@mail.gmail.com>
References: <AANLkTim8W9pk11PF23_u72yjNGDg4okx+gs+NYSg96HT@mail.gmail.com>
Message-ID: <AANLkTin15w0nfmn5RtCtNNBPOQK8qW+utFpD_gggjfS6@mail.gmail.com>

Hi Norbert,

I just found that you are asking for a 2 days simulation whereas your start
and end times give a 42 hours simulation.
I'm not enough experienced on the physics and dynamics parts to tell
anything.

Cordially

2011/3/3 Norbert Bonnici <nbon0004 at um.edu.mt>

> Dear all,
> I made a domain over Australia to simulate the Yasi tropical storm
> (1-2Feb2011) When I ran the simulation with this namelist.input I got
> this error. (files are attached)
> Can someone help me please.
> Regards
> --
> Norbert Bonnici
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 
Thierry HEDDE
Laboratoire de Mod?lisation des Transferts dans l'Environnement
CEA/CADARACHE
DEN/DTN/SMTM/LMTE
B?t. 307 Pi?ce 9
13108 ST PAUL LEZ DURANCE CEDEX
FRANCE
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From k_radhika at tropmet.res.in  Fri Mar  4 22:21:35 2011
From: k_radhika at tropmet.res.in (Kanase Radhika D.)
Date: Sat, 5 Mar 2011 10:51:35 +0530 (IST)
Subject: [Wrf-users] Wrf-users Digest, Vol 79, Issue 4, message 1
In-Reply-To: <mailman.2757.1299264831.2202.wrf-users@ucar.edu>
Message-ID: <165235044.169815.1299302495117.JavaMail.root@mail1.tropmet.res.in>



are u using grads to see the output. if yes then try the latest version of grads and also check the space on your system. 
Also try the output with ncview, if it shows something, then ARWpost don't have any problem, probably the problem is with the grads or the software ur using for display.

Radhika


----- Original Message -----
From: wrf-users-request at ucar.edu
To: wrf-users at ucar.edu
Sent: Saturday, March 5, 2011 12:23:51 AM
Subject: Wrf-users Digest, Vol 79, Issue 4

Send Wrf-users mailing list submissions to
	wrf-users at ucar.edu

To subscribe or unsubscribe via the World Wide Web, visit
	http://mailman.ucar.edu/mailman/listinfo/wrf-users
or, via email, send a message with subject or body 'help' to
	wrf-users-request at ucar.edu

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When replying, please edit your Subject line so it is more specific
than "Re: Contents of Wrf-users digest..."


Today's Topics:

   1. problem with arwpost (jagabandhu panda)
   2. Re: WRF 3.2 Model not running after 4hrs of Integration.
      (Geeta Geeta)


----------------------------------------------------------------------

Message: 1
Date: Fri, 4 Mar 2011 13:17:39 +0800
From: jagabandhu panda <jagabandhu at gmail.com>
Subject: [Wrf-users] problem with arwpost
To: wrf-users at ucar.edu
Message-ID:
	<AANLkTikbnj4mCNXX6tPVHVx_c-AuFaOAnpjn2zM1Cd7H at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

Hi



     I am trying to compute cape, cin and mcape through ARWpost (these are
calculated through the fortran code called module_calc_cape.f90 which is
provided in ARWpost). These variables are diagnostics through this package
and are expected to be diagnosed if the package is compiled successfully.
However, I am not able to do so even though I am successfult in compiling
the package successfully and correct in specifying the variables in the
namelist. Some other variables calculated through module_calc_dbz.f90 are
also not being diagnosed.



Even I tried the latest version of ARWpost uploaded in the website
yesterday! However, it is the same! I am specifying the things properly
through the namelist. However, I see segmentation fault when I include cape
or mcape or cin or dbz.



Even if I increase the debug level, still it is not coming. I tried in
various directions actually. But, I am not successful in this!



I am not sure what to do now! I will really be happy and thankful if I get
some help in this direction.



Thanks in advance

~Jagabandhu
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------------------------------

Message: 2
Date: Fri, 4 Mar 2011 04:32:04 +0000
From: Geeta Geeta <geeta124 at hotmail.com>
Subject: Re: [Wrf-users] WRF 3.2 Model not running after 4hrs of
	Integration.
To: wrf help <wrfhelp at ucar.edu>
Cc: wrf users group <wrf-users at ucar.edu>
Message-ID: <BLU152-w39AE089447A86098136EB88AC20 at phx.gbl>
Content-Type: text/plain; charset="iso-8859-1"


Dear Sir, 
Thanks for the reply. I am running WRf 3.2 for the 3 domains 27, 9 and 3 km for the 48hrs Forecast on the IBM P570 Machine. The Operating system is AIX5.3 and the code is compiled using xlf with POE in place. 
I had given the command bash$ time poe ../wrf.exe -procs 8. 

1. The model gave segmentation fault after 4hrs of Integration. I also plotted the Model forecast for 2nd and 3rd hour at 27km resolution (Domain 1) So it showed me some data being plotted 
But when I tried to plot the output for the 2nd and 3rd domain, IT says ENTIRE GRID UNDEFINED. Kindly suggest.  

2. >>>What data I have used ??
I am using the .grib2 files as Initial and BC taken from ftp://ftpprd.ncep.noaa.gov.in at 1x1 degree resolution.  

3. >>>What is the error message in your output file? Did you find any CFL
    violation?  Your namelist.input looks fine. Please send us error messages in
    your run.
I am attatching the rsl.error* and the rsl.out* files, namelist.input and namelist.wps files. It seems to me that there is no CFL violation. 

Thanks. 
geeta



Date: Thu, 3 Mar 2011 17:20:41 -0700
From: wrfhelp at ucar.edu
To: geeta124 at hotmail.com
Subject: Re: WRF 3.2 Model not running after 4hrs of Integration.



  


    
  
  
    Geeta,

    

    What is the error message in your output file? Did you find any CFL
    violation? 

    

    Your namelist.input looks fine. Please send us error messages in
    your run. 

    

    

    On 3/3/2011 3:57 AM, Geeta Geeta wrote:
    
      
      Dear All, 

      I am running WRF3.2 for 3 domains, at 27, 9 and 3kms.  After
      integrating for 4hours, the model  gives segmentation fault. and
      these directories are created and does not integrate beyond. 

      

      bash-3.2$ ncdump -v Times wrfout_d01_2010-08-04_00:00:00

      Times =

        "2010-08-04_00:00:00",

        "2010-08-04_01:00:00",

        "2010-08-04_02:00:00",

        "2010-08-04_03:00:00",

        "2010-08-04_04:00:00" ;

      }

      

      bash-3.2$ ncdump -v Times wrfout_d02_2010-08-04_00:00:00

      Times =

        "2010-08-04_00:00:00",

        "2010-08-04_01:00:00",

        "2010-08-04_02:00:00",

        "2010-08-04_03:00:00",

        "2010-08-04_04:00:00" ;

      

      bash-3.2$ ncdump -v Times wrfout_d03_2010-08-04_00:00:00

      Times =

        "2010-08-04_00:00:00",

        "2010-08-04_01:00:00",

        "2010-08-04_02:00:00",

        "2010-08-04_03:00:00",

        "2010-08-04_04:00:00" ;

      

      After integrating for 4hours, the model  gives segmentation fault.
      and these directories are created and does not integrate beyond. 

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.5

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.3

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.2

      drwxr-xr-x    2            256 Mar 03 04:20 coredir.1

      

      Kindly help. The namelist.input file is also attached for
      reference. 

      

      Geeta 

      

    
    
 		 	   		  
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------------------------------

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End of Wrf-users Digest, Vol 79, Issue 4
****************************************

From manas.soni at gmail.com  Sat Mar  5 02:08:23 2011
From: manas.soni at gmail.com (manish soni)
Date: Sat, 5 Mar 2011 14:38:23 +0530
Subject: [Wrf-users]  problem with arwpost Liquid water content
Message-ID: <AANLkTinAQv7ENgApFuN3UgB48TTa3DyETbjZUogPqU6Y@mail.gmail.com>

Hi,

*How to derive Liquid Water Content (LWC) from the output of WRF model? *


-- 
*--
(?`?.???)
`?.?(?`?.???)
(?`?.???)?.??
`?.?.??
Manish Soni
System Administrator & Jr.Scientific Officer,
RSD,
BIT Extension Center
Jaipur*
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From manas.soni at gmail.com  Sat Mar  5 02:16:30 2011
From: manas.soni at gmail.com (manish soni)
Date: Sat, 5 Mar 2011 14:46:30 +0530
Subject: [Wrf-users]  problem with arwpost Liquid water content
Message-ID: <AANLkTi=3sY=wrjkBGKpRb9y9LKOnUSKE4ug5b4ra2M48@mail.gmail.com>

Hi,

*How to derive Liquid Water Content (LWC) from the output of WRF model? *

-- 
*--
(?`?.???)
`?.?(?`?.???)
(?`?.???)?.??
`?.?.??
Manish Soni
Jaipur*
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From Michael.Zulauf at iberdrolaren.com  Fri Mar  4 17:09:52 2011
From: Michael.Zulauf at iberdrolaren.com (Zulauf, Michael)
Date: Fri, 4 Mar 2011 16:09:52 -0800
Subject: [Wrf-users] problem with "shifted" SST grid when using RTG_SST_HR
Message-ID: <B2A259FAA3CF26469FF9A7C7402C49970DE40652@POREXUW03.ppmenergy.us>

Hi WRF Community. . .

I'm attempting to use the 1/12 degree RTG_SST_HR data with WRF (from
http://polar.ncep.noaa.gov/sst/) in conjunction with 1/2 degree GFS
output, and I'm having some problems.  What I'm seeing is that the SST
data is not being properly mapped to the model grid - instead it is
being offset by a small (but significant) amount.

For example, my d03 domain covers the Pacific Northwest at 3km
resolution.  If I examine the met_em.d03 files and look at the SST
field, I see that the coastline is shifted west by approximately 1
degree (and by a smaller amount north) compared to the GFS and static
fields.  It appears to me as if the ungrib/metgrid combo isn't reading
the grid locations properly.

I'm guessing that might be because the grid definition in the RTG_SST_HR
files seems a bit wonky.  Using wgrib2 to output the grid information, I
get this:

% wgrib2 -grid /filer_data/tmp/rtgssthr_grb_0.083.grib2
1:0:grid_template=0:
        lat-lon grid:(4320 x 2160) units 1e-06 input WE:NS output WE:SN
res 48
        lat 89.958000 to -89.958000 by 0.083000
        lon 0.042000 to 359.958000 by 0.083000 #points=9331200

The number of points is correct (assuming a 1/12 degree spacing), but
the stated spacing and start/stop lat/lon values are only approximate.
It seems to me that the lat and lon should be defined as:
	lon = (i - 1/2) * ds            (i from 1 to 4320)
	lat = -90 + (j - 1/2) * ds      (j from 1 to 2160)

	ds = 1/12 degree

Is there any way to override the internal grid description in the grib
file?  Or rewrite the grid description in the grib file?  Has anybody
seen this problem before?

Thanks,
Mike

-- 

PLEASE NOTE - NEW E-MAIL ADDRESS:
michael.zulauf at iberdrolaren.com

Mike Zulauf
Meteorologist, Lead Senior
Wind Asset Management 
Iberdrola Renewables
1125 NW Couch, Suite 700
Portland, OR 97209
Office: 503-478-6304  Cell: 503-913-0403



Please be advised that email addresses for Iberdrola Renewables personnel have changed to first.last at iberdrolaREN.com effective Aug. 16, 2010.  Please make a note.  Thank you.

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From nbon0004 at um.edu.mt  Mon Mar  7 11:56:44 2011
From: nbon0004 at um.edu.mt (Norbert Bonnici)
Date: Mon, 7 Mar 2011 19:56:44 +0100
Subject: [Wrf-users] RSL CTL error
In-Reply-To: <AANLkTin15w0nfmn5RtCtNNBPOQK8qW+utFpD_gggjfS6@mail.gmail.com>
References: <AANLkTim8W9pk11PF23_u72yjNGDg4okx+gs+NYSg96HT@mail.gmail.com>
	<AANLkTin15w0nfmn5RtCtNNBPOQK8qW+utFpD_gggjfS6@mail.gmail.com>
Message-ID: <AANLkTinL+oDjbAUXBQQrWMecEyhxFS_Pni5XNAe6n=2g@mail.gmail.com>

thanks :)

On Mon, Mar 7, 2011 at 9:47 AM, Thierry HEDDE <hedde.cea at gmail.com> wrote:
> Hi Norbert,
>
> I just found that you are asking for a 2 days simulation whereas your start
> and end times give a 42 hours simulation.
> I'm not enough experienced on the physics and dynamics parts to tell
> anything.
>
> Cordially
>
> 2011/3/3 Norbert Bonnici <nbon0004 at um.edu.mt>
>>
>> Dear all,
>> I made a domain over Australia to simulate the Yasi tropical storm
>> (1-2Feb2011) When I ran the simulation with this namelist.input I got
>> this error. (files are attached)
>> Can someone help me please.
>> Regards
>> --
>> Norbert Bonnici
>>
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
>
>
>
> --
> Thierry HEDDE
> Laboratoire de Mod?lisation des Transferts dans l'Environnement
> CEA/CADARACHE
> DEN/DTN/SMTM/LMTE
> B?t. 307 Pi?ce 9
> 13108 ST PAUL LEZ DURANCE CEDEX
> FRANCE
>
>



-- 
Norbert Bonnici

From bbrashers at Environcorp.com  Tue Mar  8 11:17:07 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Tue, 8 Mar 2011 10:17:07 -0800
Subject: [Wrf-users] Recent smpar-only benchmarks?
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF308520691BB35@irvine01.irvine.environ.local>

Has anyone done some recent smpar-only WRF benchmarking of these two
systems:

Intel Xeon X5660 (6 core, 2.8 GHz)
AMD Opteron 6174 (12 core, 2.2. GHz)

You can get twice as many cores from the AMD system compared to the
Intel system, for about the same amount of money.  

Note I'm not interested in dmpar scaling, so only up to 24 (Intel) or 48
(AMD) cores per run.  I typically have many 5-day chunks to run, so I
use smpar only.

Thanks,

Bart




This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.

From df6.626 at gmail.com  Tue Mar  8 08:20:21 2011
From: df6.626 at gmail.com (Dmitry Vinokurov)
Date: Tue, 08 Mar 2011 20:20:21 +0500
Subject: [Wrf-users]  WPS linking error,
 undefined reference to `_gfortran_pow_r4_i4' etc
Message-ID: <4D764935.5010404@gmail.com>

Hi!

I'm trying to compile WRF for real data on CentOS 5.5 with gcc44 WRF was 
built successfully (after some digging and rebuilding netcdf with gcc44 
from srpm), but WPS didn't. According to manual ( 
http://www.mmm.ucar.edu/wrf/users/docs/user_guide_V3/users_guide_chap2.htm#Build_WPS 
) only plotfmt.exe and plotgrids.exe are missing, other executables 
(geogrid.exe, metgrid.exe, ungrib.exe, and avg_tsfc.exe, 
calc_ecmwf_p.exe, g1print.exe, g2print.exe, height_ukmo.exe, 
mod_levs.exe, rd_intermediate.exe) were built successfully. As far I see 
from build log, there are a couple of linker errors:
----------------
...
gfortran44 -o plotfmt.exe -g plotfmt.o read_met_module.o module_debug.o \
                 misc_definitions_module.o cio.o met_data_module.o \
                 -L/usr/lib64/ncarg 
-L/usr/lib/gcc/x86_64-redhat-linux6E/4.4.0/ -lgfortran -lg2c -lncarg 
-lncarg_gks -lncarg_c -L/usr/X11R6/lib -lX1
/usr/lib64/ncarg/libncarg.a(cpcldr.o): In function `cpcldr_':
(.text+0x734): undefined reference to `_gfortran_pow_r4_i4'
/usr/lib64/ncarg/libncarg.a(cpcldr.o): In function `cpcldr_':
(.text+0x79e): undefined reference to `_gfortran_pow_r4_i4'
/usr/lib64/ncarg/libncarg.a(cpcldr.o): In function `cpcldr_':
(.text+0xd2c): undefined reference to `_gfortran_copy_string'
...
gfortran44 -o plotgrids.exe -g module_map_utils.o module_debug.o cio.o 
constants_module.o misc_definitions_module.o \
                 plotgrids.o -L/usr/lib64/ncarg 
-L/usr/lib/gcc/x86_64-redhat-linux6E/4.4.0/ -lgfortran -lg2c -lncarg 
-lncarg_gks -lncarg_c -L/usr/X11R6/lib -lX11
/usr/lib64/ncarg/libncarg.a(mdpit.o): In function `mdpit_':
(.text+0x7ec): undefined reference to `_gfortran_pow_r8_i4'
/usr/lib64/ncarg/libncarg.a(mdpit.o): In function `mdpit_':
(.text+0xdef): undefined reference to `_gfortran_pow_r8_i4'
/usr/lib64/ncarg/libncarg.a(mdlndr.o): In function `mdlndr_':
...
----------------

As I understand, _gfortran functions are from libgfortran.so. Here are 
results of searching for one of such functions:
----------------
[user at localhost ~]$ nm -D 
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/libgfortran.so | grep 
_gfortran_pow_r4_i4
0000003e7c665c40 T _gfortran_pow_r4_i4
[user at localhost ~]$ nm -D 
/usr/lib/gcc/x86_64-redhat-linux6E/4.4.0/libgfortran.so | grep 
_gfortran_pow_r4_i4
[user at localhost ~]$
----------------

Seems like there is no such function in 4.4 libs at all.

Could anybody advise, how could I fix these errors or where they come 
from? Maybe I should rebuild ncl packages with gcc44?

-- 
Best regards,
Dmitry Vinokurov
+7 905 862 17 11
skype: d.a.vinokurov
<df6.626 at gmail.com>


From francisco.salamanca at ciemat.es  Tue Mar  8 02:29:13 2011
From: francisco.salamanca at ciemat.es (Salamanca Palou, Francisco)
Date: Tue, 8 Mar 2011 10:29:13 +0100
Subject: [Wrf-users] (no subject)
Message-ID: <19034_1299576554_4D75F6EA_19034_6655_1_AB6D2377B3C7434F88A329B01223649A166C8C@STRC.ciemat.es>


Dear all,
I am simulating with WRF V3.2.1 a fog episode of three days. The model
overstimates the fog formation and consequently the air temperature
close to the ground is very low against measurements. 
How can i improve the results ? Any help will be welcome.
Thanks so much  
Francisco Salamanca Palou
CIEMAT (Research Centre for Energy, Environment and Technology)
Avenida Complutense 22
28040 (MADRID)
SPAIN 

----------------------------
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From francisco.salamanca at ciemat.es  Tue Mar  8 02:33:35 2011
From: francisco.salamanca at ciemat.es (Salamanca Palou, Francisco)
Date: Tue, 8 Mar 2011 10:33:35 +0100
Subject: [Wrf-users] problem with arwpost Liquid water content
Message-ID: <AB6D2377B3C7434F88A329B01223649A166C8D@STRC.ciemat.es>

Hi Manish,
The variable QCLOUD is the liquid water content (kg kg -1) and QVAPOR is the vapor water content ( kg kg-1).
Warm regards
Francisco

________________________________

De: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] En nombre de manish soni
Enviado el: s?bado, 05 de marzo de 2011 10:17
Para: wrf-users at ucar.edu
Asunto: [Wrf-users] problem with arwpost Liquid water content



Hi,

How to derive Liquid Water Content (LWC) from the output of WRF model? 

-- 
-- 
(?`?.???)
`?.?(?`?.???)
(?`?.???)?.?? 
`?.?.?? 
Manish Soni
Jaipur

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From gorangas at gmail.com  Tue Mar  8 07:03:45 2011
From: gorangas at gmail.com (Goran Gasparac)
Date: Tue, 8 Mar 2011 15:03:45 +0100
Subject: [Wrf-users] wrf exe stops without error
In-Reply-To: <EB03C6A8-2CE6-414F-B03A-72046B8E10C7@chalmers.se>
References: <AANLkTim0_cgS4JyK=8SyJjbzCCzrvqO5wydBuTi1ggaL@mail.gmail.com>
	<EB03C6A8-2CE6-414F-B03A-72046B8E10C7@chalmers.se>
Message-ID: <AANLkTimUzKNFnt5qQ_2ofTejQcLS04wYyN+KP5V957g7@mail.gmail.com>

Dear users,

thanks everybody for useful tips, after all, I didn't change anything and
it's working now.
Very strange ?!
In fact I got that kind of an error for quite a long time. Sometimes I need
to start wrf.exe for 5,6 - 10,...15 times and WRF start working. Every time
it stoped (if stopping) after calling RRTM? I don't know is this connected.
Hm..in rsl* files (with debug options 5000) there isn't any sign of "error"
or "warning" word.
Anybody got that kind of problem?

Strange is also that WRF run (that WRF run that stopped few times, and
finally, after few tries start working) had excellent results without any
sign of extreme values which will give a clue that WRF is breaking because
of possible CFL......,wrong parameter combination,...?

I also did a check on met_em files with ncview, and there is also everything
OK.

Any suggestion what could be wrong?
Maybe configuration, compilation?

Just for recall, here is mine old post:
http://mailman.ucar.edu/pipermail/wrf-users/2010/001550.html

Thanks,
kind regards,
Goran Ga?parac
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From yesubabu2006 at gmail.com  Mon Mar  7 21:39:26 2011
From: yesubabu2006 at gmail.com (V.YesuBabu)
Date: Tue, 8 Mar 2011 10:09:26 +0530
Subject: [Wrf-users] Contents of Wrf-users digest...
Message-ID: <AANLkTimEsT-x_xRjOt=oSbyRNTdTsLx2=Fi-u-HsgH__@mail.gmail.com>

Reply for : Wrf-users Digest, Vol 79, Issue 6 [ problem with "shifted" SST
grid when using RTG_SST_ Zulauf, Michael ]

Dear Mike,
The intermediate
**<http://www.mmm.ucar.edu/wrf/OnLineTutorial/Basics/IM_files/index.html>file
format of  WRF WPS   ,SST and SKIN Temperature of land are represented by
same parameter "SKINTEMP*"* .If we want to replace gfs sst by satellite sst
,first we need to make gfs SKIN Temperature  to 1/12 degree resolution
binary or acsii data then replace your RTG_SST_HR data to the same gfs SST
grid points.Use the sample  program and steps for ingesting other data in
intermediate formate in WRF online tutorial
http://www.mmm.ucar.edu/wrf/OnLineTutorial/Basics/UNGRIB/index.html




-- 
***********************************
V.Yesubabu, Project Engineer,
CAS/SECG,C-DAC,Main Building,
Pune University,Pune.
India-411007.
Phone :020-25704226
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From kotroni at meteo.noa.gr  Tue Mar  8 13:38:09 2011
From: kotroni at meteo.noa.gr (Vassiliki Kotroni)
Date: Tue, 8 Mar 2011 22:38:09 +0200
Subject: [Wrf-users] amd processors and intel compilers
Message-ID: <001801cbddd0$bd2907f0$377b17d0$@noa.gr>

dear colleagues

has anyone been able to run wrf on amd processors with intel fortran
compilers (dmpar)?

I would be grateful if I could get any feedback about eventual
incompatibilities

 

thank you in advance

Vasso

----------------------------------------------------------------------------
--------

Dr. Vassiliki KOTRONI

Institute of Environmental Research

National Observatory of Athens

Lofos Koufou, P. Pendeli, GR-15236

Athens, Greece

Tel: +30 2 10  8109126

Fax: +30 2 10 8103236

Daily weather forecasts at:

www.noa.gr/forecast (in english)

www.meteo.gr       (in greek)

www.eurometeo.gr

 

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From andrew.robbie at gmail.com  Tue Mar  8 15:16:22 2011
From: andrew.robbie at gmail.com (Andrew Robbie (Gmail))
Date: Wed, 9 Mar 2011 09:16:22 +1100
Subject: [Wrf-users] Recent smpar-only benchmarks?
In-Reply-To: <1B8D1B9BF4DCDC4A90A42E312FF308520691BB35@irvine01.irvine.environ.local>
References: <1B8D1B9BF4DCDC4A90A42E312FF308520691BB35@irvine01.irvine.environ.local>
Message-ID: <1EEC4D3D-0C05-47D9-8478-75B768FCF091@gmail.com>

On 09/03/2011, at 5:17 AM, Bart Brashers wrote:

> Has anyone done some recent smpar-only WRF benchmarking of these two
> systems:
>
> Intel Xeon X5660 (6 core, 2.8 GHz)
> AMD Opteron 6174 (12 core, 2.2. GHz)
>
> You can get twice as many cores from the AMD system compared to the
> Intel system, for about the same amount of money.

I'd like to see some numbers on this too. It actually quite possible  
to get a quad-socket
board populated with AMD 8 core (eg 6134) for less than a dual socket  
X5660 system.
So 32 AMD opteron cores for the same price as 12 nehalem ones, because  
the AMD
CPU has no price penalty for running quad socket.

However I think the more relevant limitation is the memory bandwidth  
available. Each AMD
socket addresses one four-way interleave RAM bank, and each Intel has  
a three-way
interleave bank. However, especially in the case of the AMD 12 core,  
that bandwidth is being
split among many cores. The AMD chip also has an unusual cache design  
and each
pair of cores has shared access to a pair of FPUs -- hard to guess how  
this effects real
world performance.
c.f:  http://www.realworldtech.com/page.cfm?ArticleID=RWT082610181333&p=3

> Note I'm not interested in dmpar scaling, so only up to 24 (Intel)  
> or 48
> (AMD) cores per run.  I typically have many 5-day chunks to run, so I
> use smpar only.

I think dmpar benchmarks might also be greatly influenced by other  
tunables to do with MPI.

Regards,
Andrew


From ebeigi3 at tigers.lsu.edu  Tue Mar  8 15:37:00 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Tue, 8 Mar 2011 16:37:00 -0600
Subject: [Wrf-users] run an example
Message-ID: <AANLkTinxnyhS+uJonNtqxw18spzEswOTd9=vLw-QDSYQ@mail.gmail.com>

Dear Sir/Madam,

I want to run an example in WRF model, it  installed WRF version 3.2.1 and I
tried to run an example which mentioned in page in 89 ARWUsersGuideV3.pdf
(Real Data Test Case: 2000 January 24/12 through 25/12), but i couldn't run
it because of this error " Fortan 71 ( intger devied by zero)" , is this
example run only for WRF version 2.2? Is there any example i can run for WRF
3.2.1
Please inform me t how can i  find some example for running WRF 3.2.1 .

Best Regards



-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From ahsanshah01 at gmail.com  Tue Mar  8 20:37:47 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Wed, 9 Mar 2011 08:37:47 +0500
Subject: [Wrf-users] Vtable
In-Reply-To: <AANLkTimaQ9gdqYpUACXOJdQrO=VHQ5a1-tCusick8852@mail.gmail.com>
References: <AANLkTimaQ9gdqYpUACXOJdQrO=VHQ5a1-tCusick8852@mail.gmail.com>
Message-ID: <AANLkTikVy9td+DyAsAM3_zgxtYwTxsipQhHzF7ULvoz7@mail.gmail.com>

Dear,

 I am using GFS Grib2 data for WRF run. I am little confused about the use
of variable tables. In GFS data there are many variables present then why
 there are just few variables in Vtable.GFS (the default Vtable). Also there
is field regarding humidity in the Vtable as well as in the GFS data but
there is no humidity in the wrf output file. Files are attached. Please help
me.
Thanking you in advance.
regards,




-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From ahsanshah01 at gmail.com  Tue Mar  8 20:38:25 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Wed, 9 Mar 2011 08:38:25 +0500
Subject: [Wrf-users] Vtable
In-Reply-To: <AANLkTimaQ9gdqYpUACXOJdQrO=VHQ5a1-tCusick8852@mail.gmail.com>
References: <AANLkTimaQ9gdqYpUACXOJdQrO=VHQ5a1-tCusick8852@mail.gmail.com>
Message-ID: <AANLkTinRth=gn7oKrpdWiX8EdvGqW2fwfChkiimr0dVv@mail.gmail.com>

Dear,

 I am using GFS Grib2 data for WRF run. I am little confused about the use
of variable tables. In GFS data there are many variables present then why
 there are just few variables in Vtable.GFS (the default Vtable). Also there
is field regarding humidity in the Vtable as well as in the GFS data but
there is no humidity in the wrf output file. Files are attached. Please help
me.
Thanking you in advance.
regards,




-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From ahsanshah01 at gmail.com  Tue Mar  8 20:44:53 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Wed, 9 Mar 2011 08:44:53 +0500
Subject: [Wrf-users] Winds
Message-ID: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>

Hello,

 I am running WRF 3.2.1 at 11km resolution for selected region. I am having
problem while visualizing Winds at different pressure levels. while going
down from 200hpa to 850hpa there is increasing white patch in some area
showing no winds. The images are attached. Help is needed.

Regards,

-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From bbrashers at Environcorp.com  Tue Mar  8 16:09:03 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Tue, 8 Mar 2011 15:09:03 -0800
Subject: [Wrf-users] SNODAS in WRF?
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF308520691BEDC@irvine01.irvine.environ.local>

Has anyone used the SNODAS data in WRF?  It's available in netCDF format
here: http://nsidc.org/data/polaris/.  1km resolution snow data,
including snow depth and liquid water coverage.

Any suggestions on the mechanics of getting it to work, or feedback on
whether it helped the simulation, would be greatly appreciated. 

Bart



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.

From geeta124 at hotmail.com  Wed Mar  9 02:35:09 2011
From: geeta124 at hotmail.com (Geeta Geeta)
Date: Wed, 9 Mar 2011 09:35:09 +0000
Subject: [Wrf-users] WRF 3.2 Model not running after 4hrs of Integration.
Message-ID: <BLU152-w42083D88CB35BC542CDA598AC90@phx.gbl>





Dear all, 
I was running the model on the IBM P570 machine with 3 nested domains, 27, 9 and 3 kms. This problem I had reported earlier as well. The time step I have used is 120sec. The model was running up to 6hrs and after which It aborted by giving Core file. 


I am attatching the namelist.input file and the rsl files. 

bash-3.2$ ls -lrt wrfout* 
-rw-r--r--    1       51017984 Mar 08 03:06 wrfout_d01_2010-08-06_00:00:00
-rw-r--r--    1      176907272 Mar 08 03:06 wrfout_d02_2010-08-06_00:00:00
-rw-r--r--    1      252611432 Mar 08 03:06 wrfout_d03_2010-08-06_00:00:00
bash-3.2$ 
bash-3.2$ ncdump -v Times wrfout_d01_2010-08-06_00:00:00
imes =
  "2010-08-06_00:00:00",
  "2010-08-06_01:00:00",
  "2010-08-06_02:00:00",
  "2010-08-06_03:00:00",
  "2010-08-06_04:00:00",
  "2010-08-06_05:00:00",
  "2010-08-06_06:00:00" ;
}
bash-3.2$ 
AS SUGGESTED, I have tried to look for NaN in the wrfout files but It does not exist.!!!!!!

bash-3.2$ ncdump  wrfout_d01_2010-08-06_00:00:00 | grep -i NaN 
                IVGTYP:description = "DOMINANT VEGETATION CATEGORY" ;
                ISLTYP:description = "DOMINANT SOIL CATEGORY" ;
bash-3.2$ ncdump  wrfout_d02_2010-08-06_00:00:00 | grep -i NaN
                IVGTYP:description = "DOMINANT VEGETATION CATEGORY" ;
                ISLTYP:description = "DOMINANT SOIL CATEGORY" ;
bash-3.2$ ncdump  wrfout_d03_2010-08-06_00:00:00 | grep -i NaN
                IVGTYP:description = "DOMINANT VEGETATION CATEGORY" ;
                ISLTYP:description = "DOMINANT SOIL CATEGORY" ;
bash-3.2$ 
bash-3.2$ date
Tue Mar  8 03:29:15 IST 2011
bash-3.2$ 

bash-3.2$ ls -lrt core*
coredir.5:
total 655848
-rw-r--r--    1      335790224 Mar 08 03:07 core

coredir.3:
total 643664
-rw-r--r--    1      329553200 Mar 08 03:07 core

coredir.2:
total 646352
-rw-r--r--    1     330929600 Mar 08 03:07 core

coredir.1:
total 611240
-rw-r--r--    1    312953392 Mar 08 03:07 core

coredir.7:
total 606376
-rw-r--r--    1     310461104 Mar 08 03:07 core

coredir.6:
total 605224
-rw-r--r--    1     309871168 Mar 07 05:15 core

coredir.4:
total 658528
-rw-r--r--    1      337166176 Mar 08 03:07 core

coredir.0:
total 758952
-rw-r--r--    1      388580736 Mar 08 03:07 core
bash-3.2$ ls -lrt core*

I have used GREP in the rsl files 




ash-3.2$ grep -i NAN
rsl.error.0000

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 22 1 -NaNQ 5000.000000

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 49 1 NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.error.0001

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 65 1 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.error.0002

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 1 32 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.error.0003

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 63 32 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.error.0004

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 1 63 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.error.0005

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 63 81 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.error.0006

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 2 94 NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.error.0007

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 63 94 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.out.0000

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 22 1 -NaNQ 5000.000000

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 49 1 NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.out.0001

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 65 1 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.out.0002

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 1 32 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.out.0003

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 63 32 -NaNQ 5000.000000

bash-3.2$ grep -i NAN
rsl.out.0004

  WOULD GO OFF TOP:
KF_ETA_PARA I,J,DPTHMX,DPMIN 1 63 -NaNQ 5000.000000


I have Decreases the TIME step to 90sec but It has not helped me. The model aborts after running successfully for about 2-3 hours. 
PLS suggest. 

geeta



Date: Fri, 4 Mar 2011 12:46:29 -0700
From: wrfhelp at ucar.edu
To: geeta124 at hotmail.com
Subject: Re: WRF 3.2 Model not running after 4hrs of Integration.



  


    
    Message body
  
  
    Can you use ncview to look at your wrfout files? You may need to do
    to those outputs that are right before model stopped. Please check
    whether there is any weird data in those output files? 

    

    Did you see any NaN when typing ncdump wrfout | grep -i Nan? 

    

    

    On 3/3/2011 9:32 PM, Geeta Geeta wrote:
    
      
      Dear Sir, 

      Thanks for the reply. I am running WRf 3.2 for the 3 domains 27, 9
      and 3 km for the 48hrs Forecast on the IBM P570 Machine. The
      Operating system is AIX5.3 and the code is compiled using xlf with
      POE in place. 

      I had given the command bash$ time poe ../wrf.exe -procs 8. 

      

      1. The model gave segmentation fault after 4hrs of Integration. I
      also plotted the Model forecast for 2nd and 3rd hour at 27km
      resolution (Domain 1) So it showed me some data being plotted 

       But when I tried to plot the output for the 2nd and 3rd
          domain, IT says ENTIRE GRID UNDEFINED. Kindly suggest.  
       

      

      2. >>>What data I have used ??

      I am using the .grib2 files as Initial and BC taken from
          ftp://ftpprd.ncep.noaa.gov.in at 1x1 degree resolution.  

       

      3. >>>What is the error message in your output file? Did
      you find any CFL violation?  Your namelist.input looks fine.
      Please send us error messages in your run.

      I am attatching the rsl.error* and the rsl.out* files,
          namelist.input and namelist.wps files. It seems to me
        that there is no CFL violation.  

      

      Thanks. 

      geeta

      

      

      

      Date: Thu, 3 Mar 2011 17:20:41 -0700

      From: wrfhelp at ucar.edu

      To: geeta124 at hotmail.com

      Subject: Re: WRF 3.2 Model not running after 4hrs of Integration.

      

      Geeta,

      

      What is the error message in your output file? Did you find any
      CFL violation? 

      

      Your namelist.input looks fine. Please send us error messages in
      your run. 

      

      

      On 3/3/2011 3:57 AM, Geeta Geeta wrote:
      
        Dear All, 

        I am running WRF3.2 for 3 domains, at 27, 9 and 3kms.  After
        integrating for 4hours, the model  gives segmentation fault. and
        these directories are created and does not integrate beyond. 

        

        bash-3.2$ ncdump -v Times wrfout_d01_2010-08-04_00:00:00

        Times =

          "2010-08-04_00:00:00",

          "2010-08-04_01:00:00",

          "2010-08-04_02:00:00",

          "2010-08-04_03:00:00",

          "2010-08-04_04:00:00" ;

        }

        

        bash-3.2$ ncdump -v Times wrfout_d02_2010-08-04_00:00:00

        Times =

          "2010-08-04_00:00:00",

          "2010-08-04_01:00:00",

          "2010-08-04_02:00:00",

          "2010-08-04_03:00:00",

          "2010-08-04_04:00:00" ;

        

        bash-3.2$ ncdump -v Times wrfout_d03_2010-08-04_00:00:00

        Times =

          "2010-08-04_00:00:00",

          "2010-08-04_01:00:00",

          "2010-08-04_02:00:00",

          "2010-08-04_03:00:00",

          "2010-08-04_04:00:00" ;

        

        After integrating for 4hours, the model  gives segmentation
        fault. and these directories are created and does not integrate
        beyond. 

        drwxr-xr-x    2            256 Mar 03 04:20 coredir.5

        drwxr-xr-x    2            256 Mar 03 04:20 coredir.3

        drwxr-xr-x    2            256 Mar 03 04:20 coredir.2

        drwxr-xr-x    2            256 Mar 03 04:20 coredir.1

        

        Kindly help. The namelist.input file is also attached for
        reference. 

        

        Geeta 

        

      
      

    
    
 		 	   		  
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From rcalmeida at terra.com.br  Wed Mar  9 12:40:28 2011
From: rcalmeida at terra.com.br (Ricardo Almeida)
Date: Wed, 9 Mar 2011 16:40:28 -0300
Subject: [Wrf-users] Wrf-users Digest, Vol 79, Issue 11
In-Reply-To: <mailman.3305.1299696202.2202.wrf-users@ucar.edu>
References: <mailman.3305.1299696202.2202.wrf-users@ucar.edu>
Message-ID: <969B40445D244E338F945DB910232A63@ricardoPC>

Dear Syed,

That happens because some isobaric surfaces are "below" the surface level. 
Therefore winds are not defined on them.

You should use some post processing software that extrapolates winds to 
those surfaces. I suggest you check WRF documentation.

Regards,

Ricardo
----- Original Message ----- 
From: <wrf-users-request at ucar.edu>
To: <wrf-users at ucar.edu>
Sent: Wednesday, March 09, 2011 3:43 PM
Subject: Wrf-users Digest, Vol 79, Issue 11


> Send Wrf-users mailing list submissions to
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>
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> Today's Topics:
>
>   1. Winds (Ahsan Ali)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 9 Mar 2011 08:44:53 +0500
> From: Ahsan Ali <ahsanshah01 at gmail.com>
> Subject: [Wrf-users] Winds
> To: wrf-users at ucar.edu
> Message-ID:
> <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hello,
>
> I am running WRF 3.2.1 at 11km resolution for selected region. I am having
> problem while visualizing Winds at different pressure levels. while going
> down from 200hpa to 850hpa there is increasing white patch in some area
> showing no winds. The images are attached. Help is needed.
>
> Regards,
>
> -- 
> Syed Ahsan Ali Bokhari
> Electronic Engineer (EE)
>
> Research & Development Division
> Pakistan Meteorological Department H-8/4, Islamabad.
> Phone # off  +92518358714
> Cell # +923155145014
> -------------- next part --------------
> An HTML attachment was scrubbed...
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> http://mailman.ucar.edu/pipermail/wrf-users/attachments/20110309/03f1edc5/attachment.html
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>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 79, Issue 11
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From agnes.mika at bmtargoss.com  Thu Mar 10 00:52:07 2011
From: agnes.mika at bmtargoss.com (Agnes Mika)
Date: Thu, 10 Mar 2011 08:52:07 +0100
Subject: [Wrf-users] Winds
In-Reply-To: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>
References: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>
Message-ID: <20110310075207.GA16554@aggedor.argoss.nl>

Hallo Ahsan,

 It looks like there are mountains in your region. ;-) So no wonder
 that you see no wind when the mountains are higher than the altitude
 of your pressure level (e.g., 850 hPa corresponds to roughly 1500
 m). WRF does not produce forecasts under the ground level.

Greetings,
Agnes

Ahsan Ali wrote:
> Hello,
> 
>  I am running WRF 3.2.1 at 11km resolution for selected region. I am having
> problem while visualizing Winds at different pressure levels. while going
> down from 200hpa to 850hpa there is increasing white patch in some area
> showing no winds. The images are attached. Help is needed.
> 
> Regards,
> 
> -- 
> Syed Ahsan Ali Bokhari
> Electronic Engineer (EE)
> 
> Research & Development Division
> Pakistan Meteorological Department H-8/4, Islamabad.
> Phone # off  +92518358714
> Cell # +923155145014







> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

--
Dr. ?gnes Mika
Advisor, Meteorology and Air Quality

Tel:    +31 (0)527-242299
Fax:    +31 (0)527-242016
Web:    www.bmtargoss.com

BMT ARGOSS
P.O. Box 61, 8325 ZH Vollenhove
Voorsterweg 28, 8316 PT Marknesse
The Netherlands

Confidentiality Notice & Disclaimer

The contents of this e-mail and any attachments are intended for the
use of the mail addressee(s) shown. If you are not that person, you
are not allowed to take any action based upon it or to copy it,
forward, distribute or disclose its contents and you should delete it
from your system. BMT ARGOSS does not accept liability for any errors
or omissions in the context of this e-mail or its attachments which
arise as a result of internet transmission, nor accept liability for
statements which are those of the author and clearly not made on
behalf of BMT ARGOSS.



From agnes.mika at bmtargoss.com  Thu Mar 10 01:01:30 2011
From: agnes.mika at bmtargoss.com (Agnes Mika)
Date: Thu, 10 Mar 2011 09:01:30 +0100
Subject: [Wrf-users] WRF 3.2 Model not running after 4hrs of Integration.
In-Reply-To: <BLU152-w42083D88CB35BC542CDA598AC90@phx.gbl>
References: <BLU152-w42083D88CB35BC542CDA598AC90@phx.gbl>
Message-ID: <20110310080130.GB16554@aggedor.argoss.nl>

Hallo Geeta,

 The "WOULD GO OFF TOP" messages mean vertical CFL criteria
 violations. You do have to reduce your timestep further or decrease
 your vertical level spacing. It can happen in (primarily) convective
 situations that there are high vertical velocities and your timestep
 is too large to be able to resolve those (hence the CFL error).

 Where is your domain? If you are runnning the model for mountainous
 regions these errors are even more likely to occur. In this case you
 can also opt for smoothing your terrain data first so that you get
 less steep slopes. For instance, when I did simulations for
 Switzerland at 1 km resolution, without terrain smoothing, I had to
 use a timestep of 1 second to avoid violations to the CFL criterium -
 which makes the model very slooooooow...

 In most cases you can re-set the timestep to a larger value after
 after several hours (so to speed up your model run you could consider
 writing restart files, running the first say 5 hours with your
 original (120 sec) timestep, then running as long as needed with a
 much shorter timestep, then the rest of the simulation again with a
 larger timestep).

Hope this helps,
Agnes

Geeta Geeta wrote:
> 
> Dear all, 
> I was running the model on the IBM P570 machine with 3 nested domains, 27, 9 and 3 kms. This problem I had reported earlier as well. The time step I have used is 120sec. The model was running up to 6hrs and after which It aborted by giving Core file. 
> 
> 
> I am attatching the namelist.input file and the rsl files. 
> 
> bash-3.2$ ls -lrt wrfout* 
> -rw-r--r--    1       51017984 Mar 08 03:06 wrfout_d01_2010-08-06_00:00:00
> -rw-r--r--    1      176907272 Mar 08 03:06 wrfout_d02_2010-08-06_00:00:00
> -rw-r--r--    1      252611432 Mar 08 03:06 wrfout_d03_2010-08-06_00:00:00
> bash-3.2$ 
> bash-3.2$ ncdump -v Times wrfout_d01_2010-08-06_00:00:00
> imes =
>   "2010-08-06_00:00:00",
>   "2010-08-06_01:00:00",
>   "2010-08-06_02:00:00",
>   "2010-08-06_03:00:00",
>   "2010-08-06_04:00:00",
>   "2010-08-06_05:00:00",
>   "2010-08-06_06:00:00" ;
> }
> bash-3.2$ 
> AS SUGGESTED, I have tried to look for NaN in the wrfout files but It does not exist.!!!!!!
> 
> bash-3.2$ ncdump  wrfout_d01_2010-08-06_00:00:00 | grep -i NaN 
>                 IVGTYP:description = "DOMINANT VEGETATION CATEGORY" ;
>                 ISLTYP:description = "DOMINANT SOIL CATEGORY" ;
> bash-3.2$ ncdump  wrfout_d02_2010-08-06_00:00:00 | grep -i NaN
>                 IVGTYP:description = "DOMINANT VEGETATION CATEGORY" ;
>                 ISLTYP:description = "DOMINANT SOIL CATEGORY" ;
> bash-3.2$ ncdump  wrfout_d03_2010-08-06_00:00:00 | grep -i NaN
>                 IVGTYP:description = "DOMINANT VEGETATION CATEGORY" ;
>                 ISLTYP:description = "DOMINANT SOIL CATEGORY" ;
> bash-3.2$ 
> bash-3.2$ date
> Tue Mar  8 03:29:15 IST 2011
> bash-3.2$ 
> 
> bash-3.2$ ls -lrt core*
> coredir.5:
> total 655848
> -rw-r--r--    1      335790224 Mar 08 03:07 core
> 
> coredir.3:
> total 643664
> -rw-r--r--    1      329553200 Mar 08 03:07 core
> 
> coredir.2:
> total 646352
> -rw-r--r--    1     330929600 Mar 08 03:07 core
> 
> coredir.1:
> total 611240
> -rw-r--r--    1    312953392 Mar 08 03:07 core
> 
> coredir.7:
> total 606376
> -rw-r--r--    1     310461104 Mar 08 03:07 core
> 
> coredir.6:
> total 605224
> -rw-r--r--    1     309871168 Mar 07 05:15 core
> 
> coredir.4:
> total 658528
> -rw-r--r--    1      337166176 Mar 08 03:07 core
> 
> coredir.0:
> total 758952
> -rw-r--r--    1      388580736 Mar 08 03:07 core
> bash-3.2$ ls -lrt core*
> 
> I have used GREP in the rsl files 
> 
> 
> 
> 
> ash-3.2$ grep -i NAN
> rsl.error.0000
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 22 1 -NaNQ 5000.000000
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 49 1 NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.error.0001
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 65 1 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.error.0002
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 1 32 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.error.0003
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 63 32 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.error.0004
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 1 63 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.error.0005
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 63 81 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.error.0006
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 2 94 NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.error.0007
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 63 94 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.out.0000
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 22 1 -NaNQ 5000.000000
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 49 1 NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.out.0001
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 65 1 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.out.0002
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 1 32 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.out.0003
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 63 32 -NaNQ 5000.000000
> 
> bash-3.2$ grep -i NAN
> rsl.out.0004
> 
>   WOULD GO OFF TOP:
> KF_ETA_PARA I,J,DPTHMX,DPMIN 1 63 -NaNQ 5000.000000
> 
> 
> I have Decreases the TIME step to 90sec but It has not helped me. The model aborts after running successfully for about 2-3 hours. 
> PLS suggest. 
> 
> geeta
> 
> 
> 
> Date: Fri, 4 Mar 2011 12:46:29 -0700
> From: wrfhelp at ucar.edu
> To: geeta124 at hotmail.com
> Subject: Re: WRF 3.2 Model not running after 4hrs of Integration.
> 
> 
> 
>   
> 
> 
>     
>     Message body
>   
>   
>     Can you use ncview to look at your wrfout files? You may need to do
>     to those outputs that are right before model stopped. Please check
>     whether there is any weird data in those output files? 
> 
>     
> 
>     Did you see any NaN when typing ncdump wrfout | grep -i Nan? 
> 
>     
> 
>     
> 
>     On 3/3/2011 9:32 PM, Geeta Geeta wrote:
>     
>       
>       Dear Sir, 
> 
>       Thanks for the reply. I am running WRf 3.2 for the 3 domains 27, 9
>       and 3 km for the 48hrs Forecast on the IBM P570 Machine. The
>       Operating system is AIX5.3 and the code is compiled using xlf with
>       POE in place. 
> 
>       I had given the command bash$ time poe ../wrf.exe -procs 8. 
> 
>       
> 
>       1. The model gave segmentation fault after 4hrs of Integration. I
>       also plotted the Model forecast for 2nd and 3rd hour at 27km
>       resolution (Domain 1) So it showed me some data being plotted 
> 
>        But when I tried to plot the output for the 2nd and 3rd
>           domain, IT says ENTIRE GRID UNDEFINED. Kindly suggest.  
>        
> 
>       
> 
>       2. >>>What data I have used ??
> 
>       I am using the .grib2 files as Initial and BC taken from
>           ftp://ftpprd.ncep.noaa.gov.in at 1x1 degree resolution.  
> 
>        
> 
>       3. >>>What is the error message in your output file? Did
>       you find any CFL violation?  Your namelist.input looks fine.
>       Please send us error messages in your run.
> 
>       I am attatching the rsl.error* and the rsl.out* files,
>           namelist.input and namelist.wps files. It seems to me
>         that there is no CFL violation.  
> 
>       
> 
>       Thanks. 
> 
>       geeta
> 
>       
> 
>       
> 
>       
> 
>       Date: Thu, 3 Mar 2011 17:20:41 -0700
> 
>       From: wrfhelp at ucar.edu
> 
>       To: geeta124 at hotmail.com
> 
>       Subject: Re: WRF 3.2 Model not running after 4hrs of Integration.
> 
>       
> 
>       Geeta,
> 
>       
> 
>       What is the error message in your output file? Did you find any
>       CFL violation? 
> 
>       
> 
>       Your namelist.input looks fine. Please send us error messages in
>       your run. 
> 
>       
> 
>       
> 
>       On 3/3/2011 3:57 AM, Geeta Geeta wrote:
>       
>         Dear All, 
> 
>         I am running WRF3.2 for 3 domains, at 27, 9 and 3kms.  After
>         integrating for 4hours, the model  gives segmentation fault. and
>         these directories are created and does not integrate beyond. 
> 
>         
> 
>         bash-3.2$ ncdump -v Times wrfout_d01_2010-08-04_00:00:00
> 
>         Times =
> 
>           "2010-08-04_00:00:00",
> 
>           "2010-08-04_01:00:00",
> 
>           "2010-08-04_02:00:00",
> 
>           "2010-08-04_03:00:00",
> 
>           "2010-08-04_04:00:00" ;
> 
>         }
> 
>         
> 
>         bash-3.2$ ncdump -v Times wrfout_d02_2010-08-04_00:00:00
> 
>         Times =
> 
>           "2010-08-04_00:00:00",
> 
>           "2010-08-04_01:00:00",
> 
>           "2010-08-04_02:00:00",
> 
>           "2010-08-04_03:00:00",
> 
>           "2010-08-04_04:00:00" ;
> 
>         
> 
>         bash-3.2$ ncdump -v Times wrfout_d03_2010-08-04_00:00:00
> 
>         Times =
> 
>           "2010-08-04_00:00:00",
> 
>           "2010-08-04_01:00:00",
> 
>           "2010-08-04_02:00:00",
> 
>           "2010-08-04_03:00:00",
> 
>           "2010-08-04_04:00:00" ;
> 
>         
> 
>         After integrating for 4hours, the model  gives segmentation
>         fault. and these directories are created and does not integrate
>         beyond. 
> 
>         drwxr-xr-x    2            256 Mar 03 04:20 coredir.5
> 
>         drwxr-xr-x    2            256 Mar 03 04:20 coredir.3
> 
>         drwxr-xr-x    2            256 Mar 03 04:20 coredir.2
> 
>         drwxr-xr-x    2            256 Mar 03 04:20 coredir.1
> 
>         
> 
>         Kindly help. The namelist.input file is also attached for
>         reference. 
> 
>         
> 
>         Geeta 
> 
>         
> 
>       
>       
> 
>     
>     
>  		 	   		  

> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

--
Dr. ?gnes Mika
Advisor, Meteorology and Air Quality

Tel:    +31 (0)527-242299
Fax:    +31 (0)527-242016
Web:    www.bmtargoss.com

BMT ARGOSS
P.O. Box 61, 8325 ZH Vollenhove
Voorsterweg 28, 8316 PT Marknesse
The Netherlands

Confidentiality Notice & Disclaimer

The contents of this e-mail and any attachments are intended for the
use of the mail addressee(s) shown. If you are not that person, you
are not allowed to take any action based upon it or to copy it,
forward, distribute or disclose its contents and you should delete it
from your system. BMT ARGOSS does not accept liability for any errors
or omissions in the context of this e-mail or its attachments which
arise as a result of internet transmission, nor accept liability for
statements which are those of the author and clearly not made on
behalf of BMT ARGOSS.



From bbrashers at Environcorp.com  Wed Mar  9 12:27:44 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Wed, 9 Mar 2011 11:27:44 -0800
Subject: [Wrf-users] Winds
In-Reply-To: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>
References: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF308520697471C@irvine01.irvine.environ.local>

The white areas are where that pressure level is below the ground.  850
hPa is about 1350 meters above sea level, so those areas have no data at
that pressure level.

 

Bart

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Ahsan Ali
Sent: Tuesday, March 08, 2011 7:45 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] Winds

 

Hello,

 

 I am running WRF 3.2.1 at 11km resolution for selected region. I am
having problem while visualizing Winds at different pressure levels.
while going down from 200hpa to 850hpa there is increasing white patch
in some area showing no winds. The images are attached. Help is needed.

 

Regards,

-- 
Syed Ahsan Ali Bokhari 
Electronic Engineer (EE)


Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714

Cell # +923155145014

 



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From bbrashers at Environcorp.com  Mon Mar 14 13:08:49 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Mon, 14 Mar 2011 12:08:49 -0700
Subject: [Wrf-users] Benchmarking problems
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF30852069D17E8@irvine01.irvine.environ.local>

I'm trying to benchmark WRF on two comparable systems, Intel X5660 and
AMD 6174, before I buy.  I'm also trying to do a benchmark for those of
us who have many 5-day WRF runs to complete -- many runs with relatively
low core counts, rather than a single run with large core counts (the
focus of most benchmarks).

I downloaded the WRF 3.0 Benchmark parts from
http://www.mmm.ucar.edu/wrf/WG2/bench/.  I compiled using option 2
(smpar for PGI/gcc) with no problems.  In the namelist.input I specified
(for one particular run):

&domains
...snip...
 numtiles                            = 1,
 nproc_x                             = 3,
 nproc_y                             = 2,
 num_metgrid_levels                  = 40,
/

I set OMP_NUM_THREADS to 6 in my run script that calls wrf.exe.

And yet, when I look in the resulting wrf.out file I see:

 WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS =   6
 WRF NUMBER OF TILES =   6

Hey! I told you to use 1 tile and split it 3 by 2!

Is this a problem with WRF v3.0?  Looking at some WRF 3.2.1 runs where I
have numtiles = 1 and specified 4 by 1, I got more verbose output like "
WRF TILE   1 IS      1 IE    165 JS      1 JE     33".

Scaling is poor after only 4 cores, so I suspect something is going
wrong.  Any suggestions you have would be greatly appreciated.

Bart



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.

From claudiomet at gmail.com  Wed Mar  9 13:20:24 2011
From: claudiomet at gmail.com (claudiomet)
Date: Wed, 9 Mar 2011 17:20:24 -0300
Subject: [Wrf-users] Winds
In-Reply-To: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>
References: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>
Message-ID: <AANLkTin4DjJQbq-srPJW=LVvBHvFyEZdApwD5299R83+@mail.gmail.com>

Is there are topography in the blank areas, mountains perhaps ?
Look at the wind vectors around the blank areas, the vectors behavior
looks like affected by topography
cheers !

2011/3/9 Ahsan Ali <ahsanshah01 at gmail.com>:
> Hello,
> ?I am running WRF 3.2.1 at 11km resolution for selected region. I am having
> problem while visualizing Winds at different pressure levels. while going
> down from 200hpa to 850hpa there is?increasing?white patch in some area
> showing no winds. The images are attached. Help is needed.
> Regards,
>
> --
> Syed Ahsan Ali Bokhari
> Electronic Engineer (EE)
> Research & Development Division
> Pakistan Meteorological Department H-8/4, Islamabad.
> Phone?#?off ?+92518358714
> Cell # +923155145014
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>



-- 
Claudio Cortes
+56 (2) 2994121

Meteorologo
Laboratorio de Inform?tica Ambiental (LIA)
Unidad de Modelacion y Gestion de la Calidad del Aire (UMGCA)
Centro Nacional del Medio Ambiente (CENMA)

--
Claudio Cortes
+56 (2) 2994121

Meteorologist
Laboratory Research, Innovation and Applied Informatics
Modeling and Air Quality Management Unit
National Enviroment Center, Chile (CENMA)

From claudiomet at gmail.com  Wed Mar  9 13:22:57 2011
From: claudiomet at gmail.com (claudiomet)
Date: Wed, 9 Mar 2011 17:22:57 -0300
Subject: [Wrf-users] Vtable
In-Reply-To: <AANLkTikVy9td+DyAsAM3_zgxtYwTxsipQhHzF7ULvoz7@mail.gmail.com>
References: <AANLkTimaQ9gdqYpUACXOJdQrO=VHQ5a1-tCusick8852@mail.gmail.com>
	<AANLkTikVy9td+DyAsAM3_zgxtYwTxsipQhHzF7ULvoz7@mail.gmail.com>
Message-ID: <AANLkTinBpQeRuhB5ec_5UewotEGAQ-r=QmSLSOunsky3@mail.gmail.com>

Add diagnostic fields in your ARWpost namelist

&io
 io_form_input  = 2,
 input_root_name = 'INPUT_FILE',
 output_root_name = 'OUTPUT_FILE',
 plot = 'all_list'
 fields = 'height,geopt,theta,tc,tk,td,td2,rh,rh2,umet,vmet,pressure,u10m,v10m,wdir,wspd,wd10,ws10,slp,mcape,mcin,lcl,lfc,cape,cin,dbz,max_dbz,clfr'
 output_type = 'grads'
 mercator_defs = .true.
/

Cheers !

2011/3/9 Ahsan Ali <ahsanshah01 at gmail.com>:
>
> Dear,
> ?I am using GFS Grib2 data for WRF run. I am little confused about the use
> of variable tables. In GFS data there are many variables present then why
> ?there are just few variables in Vtable.GFS (the default Vtable). Also there
> is field regarding humidity in the Vtable as well as in the GFS data but
> there is no humidity in the wrf output file. Files are attached. Please help
> me.
> Thanking you in advance.
> regards,
>
>
>
> --
> Syed Ahsan Ali Bokhari
> Electronic Engineer (EE)
> Research & Development Division
> Pakistan Meteorological Department H-8/4, Islamabad.
> Phone?#?off ?+92518358714
> Cell # +923155145014
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>



-- 
Claudio Cortes
+56 (2) 2994121

Meteorologo
Laboratorio de Inform?tica Ambiental (LIA)
Unidad de Modelacion y Gestion de la Calidad del Aire (UMGCA)
Centro Nacional del Medio Ambiente (CENMA)

--
Claudio Cortes
+56 (2) 2994121

Meteorologist
Laboratory Research, Innovation and Applied Informatics
Modeling and Air Quality Management Unit
National Enviroment Center, Chile (CENMA)

From claudiomet at gmail.com  Thu Mar 10 05:20:02 2011
From: claudiomet at gmail.com (claudiomet)
Date: Thu, 10 Mar 2011 09:20:02 -0300
Subject: [Wrf-users] Winds
In-Reply-To: <AANLkTikMGjh1prQB=LOoXXkgcDgt06WGXCN_krCg65Mf@mail.gmail.com>
References: <AANLkTimSyv-zH5SJwfTe2MO-RnDegrHfy4+69c_A3r6o@mail.gmail.com>
	<AANLkTin4DjJQbq-srPJW=LVvBHvFyEZdApwD5299R83+@mail.gmail.com>
	<AANLkTikMGjh1prQB=LOoXXkgcDgt06WGXCN_krCg65Mf@mail.gmail.com>
Message-ID: <AANLkTim4TNKKCf4b7KOpyDEC463wNMkZaVRXP7wwadyR@mail.gmail.com>

Set

extrapolate = .true.

In yor ARWpost namelist to extrapolate variables below ground.
According to my experience the extrapolation it's not accurate,
because the variables loses the modification influenced by the
topography

Cheers !

2011/3/10 Ahsan Ali <ahsanshah01 at gmail.com>:
> Yeah That area is hilly and having high mountains (upper areas of Pakistan).
> But we are using another model HRM (High resolutions regional model) at
> 11km, that is showing winds at all levels in this area. So is there any was
> to change topograhy. Also there is much differennce in model height and
> actual height of this area.
>
> On Thu, Mar 10, 2011 at 1:20 AM, claudiomet <claudiomet at gmail.com> wrote:
>>
>> Is there are topography in the blank areas, mountains perhaps ?
>> Look at the wind vectors around the blank areas, the vectors behavior
>> looks like affected by topography
>> cheers !
>>
>> 2011/3/9 Ahsan Ali <ahsanshah01 at gmail.com>:
>> > Hello,
>> > ?I am running WRF 3.2.1 at 11km resolution for selected region. I am
>> > having
>> > problem while visualizing Winds at different pressure levels. while
>> > going
>> > down from 200hpa to 850hpa there is?increasing?white patch in some area
>> > showing no winds. The images are attached. Help is needed.
>> > Regards,
>> >
>> > --
>> > Syed Ahsan Ali Bokhari
>> > Electronic Engineer (EE)
>> > Research & Development Division
>> > Pakistan Meteorological Department H-8/4, Islamabad.
>> > Phone?#?off ?+92518358714
>> > Cell # +923155145014
>> >
>> >
>> > _______________________________________________
>> > Wrf-users mailing list
>> > Wrf-users at ucar.edu
>> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
>> >
>> >
>>
>>
>>
>> --
>> Claudio Cortes
>> +56 (2) 2994121
>>
>> Meteorologo
>> Laboratorio de Inform?tica Ambiental (LIA)
>> Unidad de Modelacion y Gestion de la Calidad del Aire (UMGCA)
>> Centro Nacional del Medio Ambiente (CENMA)
>>
>> --
>> Claudio Cortes
>> +56 (2) 2994121
>>
>> Meteorologist
>> Laboratory Research, Innovation and Applied Informatics
>> Modeling and Air Quality Management Unit
>> National Enviroment Center, Chile (CENMA)
>
>
>
> --
> Syed Ahsan Ali Bokhari
> Electronic Engineer (EE)
> Research & Development Division
> Pakistan Meteorological Department H-8/4, Islamabad.
> Phone?#?off ?+92518358714
> Cell # +923155145014
>
>



-- 
Claudio Cortes
+56 (2) 2994121

Meteorologo
Laboratorio de Inform?tica Ambiental (LIA)
Unidad de Modelacion y Gestion de la Calidad del Aire (UMGCA)
Centro Nacional del Medio Ambiente (CENMA)

--
Claudio Cortes
+56 (2) 2994121

Meteorologist
Laboratory Research, Innovation and Applied Informatics
Modeling and Air Quality Management Unit
National Enviroment Center, Chile (CENMA)

From ebeigi3 at tigers.lsu.edu  Fri Mar 11 15:34:07 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Fri, 11 Mar 2011 16:34:07 -0600
Subject: [Wrf-users] running an Idealized test case em_b_wave
Message-ID: <AANLkTi=tpS0DAHd2nV6YC9xMed88k1TcoG_F_Fqj=Trg@mail.gmail.com>

I have this problem when i want to run an idealized test case (em_b_wave), I
have ifort and Icc compiler. what should i do?

( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm
-I/home/ehsan/WRFV3/external/
esmf_time_f90  -I/home/ehsan/WRFV3/main
-I/home/ehsan/WRFV3/external/io_netcdf -I/home/ehsan/WRFV3/external/io_int
-I/home/ehsan/WRFV3/frame -I/home/ehsan/WRFV3/share -I/home/ehsan/WRFV3/phys
-I/home/ehsan/WRFV3/chem -I/home/ehsan/WRFV3/inc
-I/home/ehsan/netcdf3/include " SOLVER=em IDEAL_CASE=b_wave em_ideal )
make[1]: Entering directory `/home/ehsan/WRFV3/main'
( cd ../dyn_em ;  make -i -r module_initialize_b_wave.o )
make[2]: Entering directory `/home/ehsan/WRFV3/dyn_em'
make[2]: `module_initialize_b_wave.o' is up to date.
make[2]: Leaving directory `/home/ehsan/WRFV3/dyn_em'
ranlib libwrflib.a
ifort -o ideal.exe  -O3 -w -ftz -align all -fno-alias -fp-model precise -FR
-convert big_endian  -ip  ideal.o ../dyn_em/module_initialize_b_wave.o
libwrflib.a /home/ehsan/WRFV3/external/fftpack/fftpack5/libfftpack.a
/home/ehsan/WRFV3/external/io_grib1/libio_grib1.a
/home/ehsan/WRFV3/external/io_grib_share/libio_grib_share.a
/home/ehsan/WRFV3/external/io_int/libwrfio_int.a
/home/ehsan/WRFV3/external/esmf_time_f90/libesmf_time.a
/home/ehsan/WRFV3/external/RSL_LITE/librsl_lite.a
/home/ehsan/WRFV3/frame/module_internal_header_util.o
/home/ehsan/WRFV3/frame/pack_utils.o
/home/ehsan/WRFV3/external/io_netcdf/libwrfio_nf.a
-L/home/ehsan/netcdf3/lib  -lnetcdf
make[1]: ifort: Command not found
make[1]: [em_ideal] Error 127 (ignored)
make[1]: Leaving directory `/home/ehsan/WRFV3/main'
( cd test/em_b_wave ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
( cd test/em_b_wave ; /bin/rm -f ideal.exe ; ln -s ../../main/ideal.exe . )
( cd test/em_b_wave ; /bin/rm -f README.namelist ; ln -s
../../run/README.namelist . )
( cd test/em_b_wave ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt .
)
( cd test/em_b_wave ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl
. )
( cd run ; /bin/rm -f ideal.exe ; ln -s ../main/ideal.exe . )
( cd run ; if test -f namelist.input ; then \
        /bin/cp -f namelist.input namelist.input.backup ; fi ; \
        /bin/rm -f namelist.input ; ln -s ../test/em_b_wave/namelist.input .
)
( cd run ; /bin/rm -f input_jet ; ln -s ../test/em_b_wave/input_jet . )
build started:   Thu Mar 10 18:36:50 CST 2011
build completed: Thu Mar 10 18:36:56 CST 2011



after typing ./ideal.exe in WRFV3/main dir, i see this error:
-------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:    6919
 ERROR OPENING namelist.input


What should i do?

Best Regards


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From ebeigi3 at tigers.lsu.edu  Sun Mar 13 11:35:14 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Sun, 13 Mar 2011 12:35:14 -0500
Subject: [Wrf-users] running an idealized test case
In-Reply-To: <AANLkTi=t-Zw0jbxxwqOE1r5hn1ovMDZehRCBZWPp8JkN@mail.gmail.com>
References: <AANLkTimq2GSzP1_3P0oyU=obNk1NQbwB6RXjLeV-qcC3@mail.gmail.com>
	<672E3C46-C28B-4A06-A3D1-0136FF09A707@ucar.edu>
	<AANLkTikNUL+5ywn90+O0NJTBqwyeEJOng=e2MidHuvwF@mail.gmail.com>
	<5947CCA8-ADC0-4A0E-9209-C140A22D3776@ucar.edu>
	<AANLkTi=t-Zw0jbxxwqOE1r5hn1ovMDZehRCBZWPp8JkN@mail.gmail.com>
Message-ID: <AANLkTi=AptcmdUBfOMOJYfD_4ZTicVdjrDVh+WQd4Uj3@mail.gmail.com>

Dear Sir/Madam,

Thanks for your previous help,I installed the ifrot version (
l_fcompxe_ia32_2011.2.137.tgz  ,  l_fc_p_10.0.023.tar.gz , and alos
l_fc_p_10.1.026_ia32.tar.gz ), I configured the WRF with these three kind of
ifort, after compiling em_real and also em_b_wave , I didn't see any error
in compile.log :

ar: creating ./libio_grib_share.a
ar: creating ../libio_grib1.a
ar: creating libesmf_time.a
ar: creating libfftpack.a
registry.c(22): warning #1079: return type of function "main" must be "int"
  main( int argc, char *argv[], char *env[] )
  ^

registry.c(59): warning #266: function "sym_forget" declared implicitly
    sym_forget() ;
    ^

registry.c(131): warning #266: function "gen_io_boilerplate" declared
implicitly
    gen_io_boilerplate() ;  /* 20091213 jm.  Generate the
io_boilerplate_temporary.inc file */
    ^

registry.c(133): warning #266: function "init_parser" declared implicitly
    init_parser() ;
    ^

registry.c(156): warning #266: function "pre_parse" declared implicitly
    if ( pre_parse( dir, fp_in, fp_tmp ) ) {
         ^

registry.c(176): warning #266: function "check_dimspecs" declared implicitly
    check_dimspecs() ;
    ^

registry.c(186): warning #266: function "gen_actual_args_new" declared
implicitly
    gen_actual_args_new( "inc" ) ;
    ^

registry.c(188): warning #266: function "gen_dummy_args_new" declared
implicitly
    gen_dummy_args_new( "inc" ) ;
    ^

registry.c(190): warning #266: function "gen_dummy_decls_new" declared
implicitly
    gen_dummy_decls_new( "inc" ) ;
    ^

registry.c(192): warning #266: function "gen_namelist_statements" declared
implicitly
    gen_namelist_statements("inc") ;
    ^

registry.c(202): warning #266: function "gen_nest_interp" declared
implicitly
    gen_nest_interp( "inc" ) ;
    ^

registry.c(204): warning #266: function "gen_streams" declared implicitly
    gen_streams("inc") ;
    ^

registry.c(207): warning #266: function "gen_comms" declared implicitly
    gen_comms( "inc" ) ;    /* this is either package supplied (by copying a
*/
    ^

reg_parse.c(227): warning #266: function "tolower" declared implicitly
            x = tolower(tokens[F_DIMS][i]) ;
                ^

reg_parse.c(292): warning #177: label "normal" was declared but never
referenced
  normal:
  ^

reg_parse.c(453): warning #266: function "tolower" declared implicitly
      if ( tolower(tokens[FIELD_STAG][i]) == 'x' || sw_all_x_staggered )
field_struct->stag_x = 1 ;
           ^

reg_parse.c(454): warning #266: function "tolower" declared implicitly
      if ( tolower(tokens[FIELD_STAG][i]) == 'y' || sw_all_y_staggered )
field_struct->stag_y = 1 ;
           ^

reg_parse.c(455): warning #266: function "tolower" declared implicitly
      if ( tolower(tokens[FIELD_STAG][i]) == 'z' ) field_struct->stag_z = 1
;
           ^

reg_parse.c(474): warning #266: function "tolower" declared implicitly
        x = tolower(tmp[i]) ;
            ^

reg_parse.c(514): warning #266: function "tolower" declared implicitly
        x = tolower(tokens[FIELD_IO][i]) ;
            ^

misc.c(175): warning #1011: missing return statement at end of non-void
function "range_of_dimension"
  }
  ^

misc.c(217): warning #592: variable "zdex" is used before its value is set
            sprintf(tmp,"%ssm3%d,%ssm3%d,1,1", r,bdex,r,zdex ) ;
                                                        ^

misc.c(321): warning #1011: missing return statement at end of non-void
function "get_elem"
  }
  ^

misc.c(423): warning #1011: missing return statement at end of non-void
function "close_the_file"
  }
  ^

misc.c(430): warning #266: function "getpid" declared implicitly
    sprintf(tempfile,"regtmp1%d",getpid()) ;
                                 ^

misc.c(444): warning #266: function "getpid" declared implicitly
    sprintf(tempfile,"regtmp1%d",getpid()) ;
                                 ^

misc.c(462): warning #266: function "toupper" declared implicitly
    for ( p = str ; *p ; p++ ) *p = toupper(*p) ;
                                    ^

misc.c(472): warning #266: function "tolower" declared implicitly
    for ( p = str ; *p ; p++ ) *p = tolower(*p) ;
                                    ^

misc.c(645): warning #1011: missing return statement at end of non-void
function "dimension_size_expression"
  }
  ^

gen_allocs.c(73): warning #1011: missing return statement at end of non-void
function "get_count_for_alloc"
  }
  ^

gen_allocs.c(109): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(dname_tmp) ;
      ^

gen_scalar_indices.c(197): warning #266: function "make_lower_case" declared
implicitly
                    make_lower_case(fname)  ;
                    ^

gen_config.c(135): warning #266: function "sym_forget" declared implicitly
    sym_forget() ;
    ^

gen_config.c(167): warning #266: function "toupper" declared implicitly
                    fputc(toupper(*i),fp);
                          ^

gen_config.c(172): warning #266: function "toupper" declared implicitly
                       fputc(toupper(*i),fp);
                             ^

gen_config.c(178): warning #266: function "toupper" declared implicitly
                      fputc(toupper(*i),fp);
                            ^

gen_config.c(409): warning #266: function "sym_forget" declared implicitly
    sym_forget() ;
    ^

sym.c(73): warning #266: function "create_ht" declared implicitly
      create_ht( &symtab ) ;
      ^

sym.c(77): warning #266: function "exit" declared implicitly
      exit(1) ;
      ^

sym.c(153): warning #266: function "create_ht" declared implicitly
    create_ht( &symtab ) ;
    ^

sym.c(157): warning #266: function "exit" declared implicitly
        exit(1) ;
        ^

symtab_gen.c(62): warning #266: function "hash" declared implicitly
      index = hash( name ) ;
              ^

gen_comms.c(157): warning #1011: missing return statement at end of non-void
function "print_4d_i1_decls"
  }
  ^

gen_comms.c(196): warning #1011: missing return statement at end of non-void
function "print_decl"
    }
    ^

gen_comms.c(206): warning #1011: missing return statement at end of non-void
function "print_body"
    }
    ^

gen_comms.c(248): warning #266: function "make_upper_case" declared
implicitly
          make_upper_case(commname) ;
          ^

gen_comms.c(266): warning #266: function "make_upper_case" declared
implicitly
        make_upper_case(commname) ;
        ^

gen_comms.c(985): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(commname) ;
      ^

gen_comms.c(1178): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(commname) ;
      ^

gen_comms.c(1312): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(commname) ;
      ^

gen_comms.c(1454): warning #266: function "make_upper_case" declared
implicitly
        make_upper_case(commname) ;
        ^

gen_comms.c(1672): warning #268: the format string ends before this argument
         sprintf(fname,"shift_halo",*direction) ;
                                    ^

gen_comms.c(1949): warning #1011: missing return statement at end of
non-void function "gen_shift"
  }
  ^

gen_comms.c(2428): warning #1011: missing return statement at end of
non-void function "gen_debug"
  }
  ^

set_dim_strs.c(145): warning #1011: missing return statement at end of
non-void function "set_dim_strs"
  }
  ^

set_dim_strs.c(153): warning #1011: missing return statement at end of
non-void function "set_dim_strs2"
  }
  ^

set_dim_strs.c(159): warning #1011: missing return statement at end of
non-void function "set_dim_strs3"
  }
  ^

gen_wrf_io.c(36): warning #266: function "sym_forget" declared implicitly
    OP_F(fp,"wrf_bdyout.inc") ;
    ^

gen_wrf_io.c(452): warning #266: function "make_upper_case" declared
implicitly
            make_upper_case(dname) ;
            ^

gen_streams.c(25): warning #266: function "gen_io_domain_defs" declared
implicitly
    gen_io_domain_defs( fp ) ;
    ^

gen_streams.c(33): warning #266: function "gen_set_timekeeping_defs"
declared implicitly
    gen_set_timekeeping_defs( fp ) ;
    ^

gen_streams.c(41): warning #266: function "gen_set_timekeeping_alarms"
declared implicitly
    gen_set_timekeeping_alarms( fp ) ;
    ^

gen_streams.c(49): warning #266: function "gen_io_form_for_dataset" declared
implicitly
    gen_io_form_for_dataset( fp ) ;
    ^

gen_streams.c(57): warning #266: function "gen_io_form_for_stream" declared
implicitly
    gen_io_form_for_stream( fp ) ;
    ^

gen_streams.c(65): warning #266: function "gen_switches_and_alarms" declared
implicitly
    gen_switches_and_alarms( fp ) ;
    ^

gen_streams.c(73): warning #266: function "gen_check_auxstream_alarms"
declared implicitly
    gen_check_auxstream_alarms( fp ) ;
    ^

gen_streams.c(81): warning #266: function "gen_fine_stream_input" declared
implicitly
    gen_fine_stream_input( fp ) ;
    ^

gen_streams.c(89): warning #266: function "gen_med_auxinput_in" declared
implicitly
    gen_med_auxinput_in( fp ) ;
    ^

gen_streams.c(97): warning #266: function "gen_med_hist_out_opens" declared
implicitly
    gen_med_hist_out_opens( fp ) ;
    ^

gen_streams.c(105): warning #266: function "gen_med_hist_out_closes"
declared implicitly
    gen_med_hist_out_closes( fp ) ;
    ^

gen_streams.c(113): warning #266: function "gen_med_auxinput_in_closes"
declared implicitly
    gen_med_auxinput_in_closes( fp ) ;
    ^

gen_streams.c(121): warning #266: function "gen_med_last_solve_io" declared
implicitly
    gen_med_last_solve_io( fp ) ;
    ^

gen_streams.c(129): warning #266: function "gen_med_open_esmf_calls"
declared implicitly
    gen_med_open_esmf_calls( fp ) ;
    ^

gen_streams.c(137): warning #266: function "gen_med_find_esmf_coupling"
declared implicitly
    gen_med_find_esmf_coupling( fp ) ;
    ^

gen_streams.c(145): warning #266: function "gen_shutdown_closes" declared
implicitly
    gen_shutdown_closes( fp ) ;
    ^

gen_streams.c(180): warning #1011: missing return statement at end of
non-void function "gen_io_domain_defs"
  }
  ^

gen_streams.c(213): warning #1011: missing return statement at end of
non-void function "gen_set_timekeeping_defs"
  }
  ^

gen_streams.c(296): warning #1011: missing return statement at end of
non-void function "gen_set_timekeeping_alarms"
  }
  ^

gen_streams.c(323): warning #1011: missing return statement at end of
non-void function "gen_io_form_for_dataset"
  }
  ^

gen_streams.c(350): warning #1011: missing return statement at end of
non-void function "gen_io_form_for_stream"
  }
  ^

gen_streams.c(369): warning #1011: missing return statement at end of
non-void function "gen_switches_and_alarms"
  }
  ^

gen_streams.c(400): warning #1011: missing return statement at end of
non-void function "gen_check_auxstream_alarms"
  }
  ^

gen_streams.c(422): warning #1011: missing return statement at end of
non-void function "gen_fine_stream_input"
  }
  ^

gen_streams.c(437): warning #1011: missing return statement at end of
non-void function "gen_med_auxinput_in"
  }
  ^

gen_streams.c(452): warning #1011: missing return statement at end of
non-void function "gen_med_hist_out_opens"
  }
  ^

gen_streams.c(468): warning #1011: missing return statement at end of
non-void function "gen_med_hist_out_closes"
  }
  ^

gen_streams.c(484): warning #1011: missing return statement at end of
non-void function "gen_med_auxinput_in_closes"
  }
  ^

gen_streams.c(497): warning #1011: missing return statement at end of
non-void function "gen_med_last_solve_io"
  }
  ^

gen_streams.c(508): warning #1011: missing return statement at end of
non-void function "gen_shutdown_closes"
  }
  ^

gen_streams.c(628): warning #1011: missing return statement at end of
non-void function "gen_io_boilerplate"
  }
  ^

standard.c(43): warning #266: function "strncpy" declared implicitly
          strncpy(q,p,4) ; q+=4 ;
          ^

standard.c(54): warning #266: function "strncmp" declared implicitly
          if ( !strncmp( wrf_error_fatal_str, "wrf_error_fatal", 15 ) &&
wrf_error_fatal_str[15] != '3' )
                ^

standard.c(78): warning #266: function "strcpy" declared implicitly
            strcpy(lineo,p+3+ns) ;
            ^

standard.c(88): warning #266: function "strcat" declared implicitly
              strcat(lineo,linei) ;
              ^

standard.c(166): warning #1011: missing return statement at end of non-void
function "drop_comment"
  }
  ^

standard.c(176): warning #1011: missing return statement at end of non-void
function "change_to_lower"
  }
  ^

opening Registry/registry.dimspec
including Registry/registry.dimspec
opening Registry/registry.les
including Registry/registry.les
opening Registry/registry.io_boilerplate
including Registry/registry.io_boilerplate
opening Registry/io_boilerplate_temporary.inc
including Registry/io_boilerplate_temporary.inc
opening Registry/registry.fire
including Registry/registry.fire
opening Registry/registry.avgflx
including Registry/registry.avgflx
Registry INFO variable counts: 0d 1823 1d 69 2d 469 3d 281
ADVISORY: RSL_LITE version of gen_comms is linked in with registry program.
ar: creating ../main/libwrflib.a




after typing ./real.exe  it see this error :

Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 REAL_EM V3.2.1 PREPROCESSOR
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,    104874600 bytes allocated
Time period #   1 to process = 2000-01-24_12:00:00.
Time period #   2 to process = 2000-01-24_18:00:00.
Time period #   3 to process = 2000-01-25_00:00:00.
Time period #   4 to process = 2000-01-25_06:00:00.
Time period #   5 to process = 2000-01-25_12:00:00.
Total analysis times to input =    5.

 -----------------------------------------------------------------------------

 Domain  1: Current date being processed: 2000-01-24_12:00:00.0000, which is
loop #   1 out of    5
 configflags%julyr, %julday, %gmt:        2000          24   12.00000
 metgrid input_wrf.F first_date_input = 2000-01-24_12:00:00
  metgrid input_wrf.F first_date_nml = 2000-01-24_12:00:00
 d01 2000-01-24_12:00:00 Timing for input          0 s.
 Max map factor in domain 1 =  1.03. Scale the dt in the model accordingly.
forrtl: severe (66): output statement overflows record, unit -5, file
Internal Formatted Write
Image              PC        Routine            Line
Source
real.exe           08DBF613  Unknown               Unknown  Unknown
real.exe           08DBE330  Unknown               Unknown  Unknown
real.exe           08D7B22E  Unknown               Unknown  Unknown
real.exe           08D32BBC  Unknown               Unknown  Unknown
real.exe           08D324BA  Unknown               Unknown  Unknown
real.exe           08D62029  Unknown               Unknown  Unknown
real.exe           08093551  Unknown               Unknown  Unknown
real.exe           0809C118  Unknown               Unknown  Unknown

after typing ./wrf.exe I see this error:

Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     98194920 bytes allocated
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:      67
  program wrf: error opening wrfinput_d01 for reading ierr=
-1021




I would appreciate it if you could help me solve the problem.



Best Regards

Ehsan Beigi

On Fri, Mar 11, 2011 at 7:20 PM, Ehsan Beigi <ebeigi3 at tigers.lsu.edu> wrote:

> I had  run the real test  case em_real and i had this error :
>
> *forrtl: severe (71): integer divide by zero*
>
>
>
> do I have problem with my intel fortran compiler?
>
> Best Regards
>
> Ehsan
>
>
>
>
> On Fri, Mar 11, 2011 at 7:13 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>
> You should first check whether the code is properly compiled. I see that
>> you have error messages like:
>>
>>
>> make[1]: ifort: Command not found
>>
>> that seems to suggest that the code is not compiled because it didn't find
>> the ifort compiler.
>>
>> wrfhelp
>>
>>
>> On Mar 11, 2011, at 6:04 PM, Ehsan Beigi wrote:
>>
>>  Thanks for your reply, I did run  in this directory = test/em_b_wave ,
>>> but the problem doesn't solve, what should i do?
>>>
>>> Best Regards
>>> Ehsan Beigi
>>>
>>>
>>>
>>> On Fri, Mar 11, 2011 at 6:58 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>>> You are supposed to run the model in test/em_b_wave directory, where a
>>> namelist file exists.
>>>
>>> wrfhelp
>>>
>>>
>>> On Mar 11, 2011, at 2:42 PM, Ehsan Beigi wrote:
>>>
>>>
>>> Dear Sir/Madam,
>>>
>>> I have this problem when i want to run an idealized test case
>>> (em_b_wave), I have ifort and Icc compiler. what should i do?
>>>
>>> ( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm
>>> -I/home/ehsan/WRFV3/external/esmf_time_f90  -I/home/ehsan/WRFV3/main
>>> -I/home/ehsan/WRFV3/external/io_netcdf -I/home/ehsan/WRFV3/external/io_int
>>> -I/home/ehsan/WRFV3/frame -I/home/ehsan/WRFV3/share -I/home/ehsan/WRFV3/phys
>>> -I/home/ehsan/WRFV3/chem -I/home/ehsan/WRFV3/inc
>>> -I/home/ehsan/netcdf3/include " SOLVER=em IDEAL_CASE=b_wave em_ideal )
>>> make[1]: Entering directory `/home/ehsan/WRFV3/main'
>>> ( cd ../dyn_em ;  make -i -r module_initialize_b_wave.o )
>>> make[2]: Entering directory `/home/ehsan/WRFV3/dyn_em'
>>> make[2]: `module_initialize_b_wave.o' is up to date.
>>> make[2]: Leaving directory `/home/ehsan/WRFV3/dyn_em'
>>> ranlib libwrflib.a
>>> ifort -o ideal.exe  -O3 -w -ftz -align all -fno-alias -fp-model precise
>>> -FR -convert big_endian  -ip  ideal.o ../dyn_em/module_initialize_b_wave.o
>>> libwrflib.a /home/ehsan/WRFV3/external/fftpack/fftpack5/libfftpack.a
>>> /home/ehsan/WRFV3/external/io_grib1/libio_grib1.a
>>> /home/ehsan/WRFV3/external/io_grib_share/libio_grib_share.a
>>> /home/ehsan/WRFV3/external/io_int/libwrfio_int.a
>>> /home/ehsan/WRFV3/external/esmf_time_f90/libesmf_time.a
>>> /home/ehsan/WRFV3/external/RSL_LITE/librsl_lite.a
>>> /home/ehsan/WRFV3/frame/module_internal_header_util.o
>>> /home/ehsan/WRFV3/frame/pack_utils.o
>>>  /home/ehsan/WRFV3/external/io_netcdf/libwrfio_nf.a
>>> -L/home/ehsan/netcdf3/lib  -lnetcdf
>>> make[1]: ifort: Command not found
>>> make[1]: [em_ideal] Error 127 (ignored)
>>> make[1]: Leaving directory `/home/ehsan/WRFV3/main'
>>> ( cd test/em_b_wave ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
>>> ( cd test/em_b_wave ; /bin/rm -f ideal.exe ; ln -s ../../main/ideal.exe .
>>> )
>>> ( cd test/em_b_wave ; /bin/rm -f README.namelist ; ln -s
>>> ../../run/README.namelist . )
>>> ( cd test/em_b_wave ; /bin/rm -f gribmap.txt ; ln -s
>>> ../../run/gribmap.txt . )
>>> ( cd test/em_b_wave ; /bin/rm -f grib2map.tbl ; ln -s
>>> ../../run/grib2map.tbl . )
>>> ( cd run ; /bin/rm -f ideal.exe ; ln -s ../main/ideal.exe . )
>>> ( cd run ; if test -f namelist.input ; then \
>>>       /bin/cp -f namelist.input namelist.input.backup ; fi ; \
>>>       /bin/rm -f namelist.input ; ln -s ../test/em_b_wave/namelist.input
>>> . )
>>> ( cd run ; /bin/rm -f input_jet ; ln -s ../test/em_b_wave/input_jet . )
>>> build started:   Thu Mar 10 18:36:50 CST 2011
>>> build completed: Thu Mar 10 18:36:56 CST 2011
>>>
>>>
>>>
>>> after typing ./ideal.exe in WRFV3/main dir, i see this error:
>>> -------------- FATAL CALLED ---------------
>>>  FATAL CALLED FROM FILE:  <stdin>  LINE:    6919
>>>  ERROR OPENING namelist.input
>>>
>>>
>>> What should i do?
>>>
>>> Best Regards
>>>
>>>
>>>
>>>
>>> --
>>> Ehsan Beigi
>>> PhD Student
>>> Department of Civil and and Environmental Engineering
>>> 2408 Patrick F. Taylor Hall
>>> Louisiana State University
>>> Baton Rouge, LA, 70803
>>>
>>>
>>>
>>> wrfhelp
>>> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>>>
>>>
>>>
>>>
>>>
>>>
>>> --
>>> Ehsan Beigi
>>> PhD Student
>>> Department of Civil and and Environmental Engineering
>>> 2408 Patrick F. Taylor Hall
>>> Louisiana State University
>>> Baton Rouge, LA, 70803
>>>
>>>
>>>
>> wrfhelp
>> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>>
>>
>>
>>
>
>
> --
> *Ehsan Beigi*
> *PhD Student*
> *Department of Civil and and Environmental Engineering
> 2408 Patrick F. Taylor Hall
> Louisiana State University
> Baton Rouge, LA, 70803*
>
>
>


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
-------------- next part --------------
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From ebeigi3 at tigers.lsu.edu  Sun Mar 13 13:17:55 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Sun, 13 Mar 2011 14:17:55 -0500
Subject: [Wrf-users] running real test case (em_real)
Message-ID: <AANLkTik2cqmY1BrsweEWDFDZQ_o-2bd98htm=O4a5TR6@mail.gmail.com>

*Dear Sir/Madam,
my compiler is ifort and icc, i compiled em_real , and this is* compile.log

ar: creating ./libio_grib_share.a
ar: creating ../libio_grib1.a
ar: creating libesmf_time.a
ar: creating libfftpack.a
registry.c(22): warning #1079: return type of function "main" must be "int"
  main( int argc, char *argv[], char *env[] )
  ^

registry.c(59): warning #266: function "sym_forget" declared implicitly
    sym_forget() ;
    ^

registry.c(131): warning #266: function "gen_io_boilerplate" declared
implicitly
    gen_io_boilerplate() ;  /* 20091213 jm.  Generate the
io_boilerplate_temporary.inc file */
    ^

registry.c(133): warning #266: function "init_parser" declared implicitly
    init_parser() ;
    ^

registry.c(156): warning #266: function "pre_parse" declared implicitly
    if ( pre_parse( dir, fp_in, fp_tmp ) ) {
         ^

registry.c(176): warning #266: function "check_dimspecs" declared implicitly
    check_dimspecs() ;
    ^

registry.c(186): warning #266: function "gen_actual_args_new" declared
implicitly
    gen_actual_args_new( "inc" ) ;
    ^

registry.c(188): warning #266: function "gen_dummy_args_new" declared
implicitly
    gen_dummy_args_new( "inc" ) ;
    ^

registry.c(190): warning #266: function "gen_dummy_decls_new" declared
implicitly
    gen_dummy_decls_new( "inc" ) ;
    ^

registry.c(192): warning #266: function "gen_namelist_statements" declared
implicitly
    gen_namelist_statements("inc") ;
    ^

registry.c(202): warning #266: function "gen_nest_interp" declared
implicitly
    gen_nest_interp( "inc" ) ;
    ^

registry.c(204): warning #266: function "gen_streams" declared implicitly
    gen_streams("inc") ;
    ^

registry.c(207): warning #266: function "gen_comms" declared implicitly
    gen_comms( "inc" ) ;    /* this is either package supplied (by copying a
*/
    ^

reg_parse.c(227): warning #266: function "tolower" declared implicitly
            x = tolower(tokens[F_DIMS][i]) ;
                ^

reg_parse.c(292): warning #177: label "normal" was declared but never
referenced
  normal:
  ^

reg_parse.c(453): warning #266: function "tolower" declared implicitly
      if ( tolower(tokens[FIELD_STAG][i]) == 'x' || sw_all_x_staggered )
field_struct->stag_x = 1 ;
           ^

reg_parse.c(454): warning #266: function "tolower" declared implicitly
      if ( tolower(tokens[FIELD_STAG][i]) == 'y' || sw_all_y_staggered )
field_struct->stag_y = 1 ;
           ^

reg_parse.c(455): warning #266: function "tolower" declared implicitly
      if ( tolower(tokens[FIELD_STAG][i]) == 'z' ) field_struct->stag_z = 1
;
           ^

reg_parse.c(474): warning #266: function "tolower" declared implicitly
        x = tolower(tmp[i]) ;
            ^

reg_parse.c(514): warning #266: function "tolower" declared implicitly
        x = tolower(tokens[FIELD_IO][i]) ;
            ^

misc.c(175): warning #1011: missing return statement at end of non-void
function "range_of_dimension"
  }
  ^

misc.c(217): warning #592: variable "zdex" is used before its value is set
            sprintf(tmp,"%ssm3%d,%ssm3%d,1,1", r,bdex,r,zdex ) ;
                                                        ^

misc.c(321): warning #1011: missing return statement at end of non-void
function "get_elem"
  }
  ^

misc.c(423): warning #1011: missing return statement at end of non-void
function "close_the_file"
  }
  ^

misc.c(430): warning #266: function "getpid" declared implicitly
    sprintf(tempfile,"regtmp1%d",getpid()) ;
                                 ^

misc.c(444): warning #266: function "getpid" declared implicitly
    sprintf(tempfile,"regtmp1%d",getpid()) ;
                                 ^

misc.c(462): warning #266: function "toupper" declared implicitly
    for ( p = str ; *p ; p++ ) *p = toupper(*p) ;
                                    ^

misc.c(472): warning #266: function "tolower" declared implicitly
    for ( p = str ; *p ; p++ ) *p = tolower(*p) ;
                                    ^

misc.c(645): warning #1011: missing return statement at end of non-void
function "dimension_size_expression"
  }
  ^

gen_allocs.c(73): warning #1011: missing return statement at end of non-void
function "get_count_for_alloc"
  }
  ^

gen_allocs.c(109): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(dname_tmp) ;
      ^

gen_scalar_indices.c(197): warning #266: function "make_lower_case" declared
implicitly
                    make_lower_case(fname)  ;
                    ^

gen_config.c(135): warning #266: function "sym_forget" declared implicitly
    sym_forget() ;
    ^

gen_config.c(167): warning #266: function "toupper" declared implicitly
                    fputc(toupper(*i),fp);
                          ^

gen_config.c(172): warning #266: function "toupper" declared implicitly
                       fputc(toupper(*i),fp);
                             ^

gen_config.c(178): warning #266: function "toupper" declared implicitly
                      fputc(toupper(*i),fp);
                            ^

gen_config.c(409): warning #266: function "sym_forget" declared implicitly
    sym_forget() ;
    ^

sym.c(73): warning #266: function "create_ht" declared implicitly
      create_ht( &symtab ) ;
      ^

sym.c(77): warning #266: function "exit" declared implicitly
      exit(1) ;
      ^

sym.c(153): warning #266: function "create_ht" declared implicitly
    create_ht( &symtab ) ;
    ^

sym.c(157): warning #266: function "exit" declared implicitly
        exit(1) ;
        ^

symtab_gen.c(62): warning #266: function "hash" declared implicitly
      index = hash( name ) ;
              ^

gen_comms.c(157): warning #1011: missing return statement at end of non-void
function "print_4d_i1_decls"
  }
  ^

gen_comms.c(196): warning #1011: missing return statement at end of non-void
function "print_decl"
    }
    ^

gen_comms.c(206): warning #1011: missing return statement at end of non-void
function "print_body"
    }
    ^

gen_comms.c(248): warning #266: function "make_upper_case" declared
implicitly
          make_upper_case(commname) ;
          ^

gen_comms.c(266): warning #266: function "make_upper_case" declared
implicitly
        make_upper_case(commname) ;
        ^

gen_comms.c(985): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(commname) ;
      ^

gen_comms.c(1178): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(commname) ;
      ^

gen_comms.c(1312): warning #266: function "make_upper_case" declared
implicitly
      make_upper_case(commname) ;
      ^

gen_comms.c(1454): warning #266: function "make_upper_case" declared
implicitly
        make_upper_case(commname) ;
        ^

gen_comms.c(1672): warning #268: the format string ends before this argument
         sprintf(fname,"shift_halo",*direction) ;
                                    ^

gen_comms.c(1949): warning #1011: missing return statement at end of
non-void function "gen_shift"
  }
  ^

gen_comms.c(2428): warning #1011: missing return statement at end of
non-void function "gen_debug"
  }
  ^

set_dim_strs.c(145): warning #1011: missing return statement at end of
non-void function "set_dim_strs"
  }
  ^

set_dim_strs.c(153): warning #1011: missing return statement at end of
non-void function "set_dim_strs2"
  }
  ^

set_dim_strs.c(159): warning #1011: missing return statement at end of
non-void function "set_dim_strs3"
  }
  ^

gen_wrf_io.c(36): warning #266: function "sym_forget" declared implicitly
    OP_F(fp,"wrf_bdyout.inc") ;
    ^

gen_wrf_io.c(452): warning #266: function "make_upper_case" declared
implicitly
            make_upper_case(dname) ;
            ^

gen_streams.c(25): warning #266: function "gen_io_domain_defs" declared
implicitly
    gen_io_domain_defs( fp ) ;
    ^

gen_streams.c(33): warning #266: function "gen_set_timekeeping_defs"
declared implicitly
    gen_set_timekeeping_defs( fp ) ;
    ^

gen_streams.c(41): warning #266: function "gen_set_timekeeping_alarms"
declared implicitly
    gen_set_timekeeping_alarms( fp ) ;
    ^

gen_streams.c(49): warning #266: function "gen_io_form_for_dataset" declared
implicitly
    gen_io_form_for_dataset( fp ) ;
    ^

gen_streams.c(57): warning #266: function "gen_io_form_for_stream" declared
implicitly
    gen_io_form_for_stream( fp ) ;
    ^

gen_streams.c(65): warning #266: function "gen_switches_and_alarms" declared
implicitly
    gen_switches_and_alarms( fp ) ;
    ^

gen_streams.c(73): warning #266: function "gen_check_auxstream_alarms"
declared implicitly
    gen_check_auxstream_alarms( fp ) ;
    ^

gen_streams.c(81): warning #266: function "gen_fine_stream_input" declared
implicitly
    gen_fine_stream_input( fp ) ;
    ^

gen_streams.c(89): warning #266: function "gen_med_auxinput_in" declared
implicitly
    gen_med_auxinput_in( fp ) ;
    ^

gen_streams.c(97): warning #266: function "gen_med_hist_out_opens" declared
implicitly
    gen_med_hist_out_opens( fp ) ;
    ^

gen_streams.c(105): warning #266: function "gen_med_hist_out_closes"
declared implicitly
    gen_med_hist_out_closes( fp ) ;
    ^

gen_streams.c(113): warning #266: function "gen_med_auxinput_in_closes"
declared implicitly
    gen_med_auxinput_in_closes( fp ) ;
    ^

gen_streams.c(121): warning #266: function "gen_med_last_solve_io" declared
implicitly
    gen_med_last_solve_io( fp ) ;
    ^

gen_streams.c(129): warning #266: function "gen_med_open_esmf_calls"
declared implicitly
    gen_med_open_esmf_calls( fp ) ;
    ^

gen_streams.c(137): warning #266: function "gen_med_find_esmf_coupling"
declared implicitly
    gen_med_find_esmf_coupling( fp ) ;
    ^

gen_streams.c(145): warning #266: function "gen_shutdown_closes" declared
implicitly
    gen_shutdown_closes( fp ) ;
    ^

gen_streams.c(180): warning #1011: missing return statement at end of
non-void function "gen_io_domain_defs"
  }
  ^

gen_streams.c(213): warning #1011: missing return statement at end of
non-void function "gen_set_timekeeping_defs"
  }
  ^

gen_streams.c(296): warning #1011: missing return statement at end of
non-void function "gen_set_timekeeping_alarms"
  }
  ^

gen_streams.c(323): warning #1011: missing return statement at end of
non-void function "gen_io_form_for_dataset"
  }
  ^

gen_streams.c(350): warning #1011: missing return statement at end of
non-void function "gen_io_form_for_stream"
  }
  ^

gen_streams.c(369): warning #1011: missing return statement at end of
non-void function "gen_switches_and_alarms"
  }
  ^

gen_streams.c(400): warning #1011: missing return statement at end of
non-void function "gen_check_auxstream_alarms"
  }
  ^

gen_streams.c(422): warning #1011: missing return statement at end of
non-void function "gen_fine_stream_input"
  }
  ^

gen_streams.c(437): warning #1011: missing return statement at end of
non-void function "gen_med_auxinput_in"
  }
  ^

gen_streams.c(452): warning #1011: missing return statement at end of
non-void function "gen_med_hist_out_opens"
  }
  ^

gen_streams.c(468): warning #1011: missing return statement at end of
non-void function "gen_med_hist_out_closes"
  }
  ^

gen_streams.c(484): warning #1011: missing return statement at end of
non-void function "gen_med_auxinput_in_closes"
  }
  ^

gen_streams.c(497): warning #1011: missing return statement at end of
non-void function "gen_med_last_solve_io"
  }
  ^

gen_streams.c(508): warning #1011: missing return statement at end of
non-void function "gen_shutdown_closes"
  }
  ^

gen_streams.c(628): warning #1011: missing return statement at end of
non-void function "gen_io_boilerplate"
  }
  ^

standard.c(43): warning #266: function "strncpy" declared implicitly
          strncpy(q,p,4) ; q+=4 ;
          ^

standard.c(54): warning #266: function "strncmp" declared implicitly
          if ( !strncmp( wrf_error_fatal_str, "wrf_error_fatal", 15 ) &&
wrf_error_fatal_str[15] != '3' )
                ^

standard.c(78): warning #266: function "strcpy" declared implicitly
            strcpy(lineo,p+3+ns) ;
            ^

standard.c(88): warning #266: function "strcat" declared implicitly
              strcat(lineo,linei) ;
              ^

standard.c(166): warning #1011: missing return statement at end of non-void
function "drop_comment"
  }
  ^

standard.c(176): warning #1011: missing return statement at end of non-void
function "change_to_lower"
  }
  ^

opening Registry/registry.dimspec
including Registry/registry.dimspec
opening Registry/registry.les
including Registry/registry.les
opening Registry/registry.io_boilerplate
including Registry/registry.io_boilerplate
opening Registry/io_boilerplate_temporary.inc
including Registry/io_boilerplate_temporary.inc
opening Registry/registry.fire
including Registry/registry.fire
opening Registry/registry.avgflx
including Registry/registry.avgflx
Registry INFO variable counts: 0d 1823 1d 69 2d 469 3d 281
ADVISORY: RSL_LITE version of gen_comms is linked in with registry program.
ar: creating ../main/libwrflib.a


*and then downloaded the  WRF Model Test Data (January 2000 WPS output
data:<http://www.mmm.ucar.edu/wrf/src/data/jan00_wps.tar.gz>
http://www.mmm.ucar.edu/wrf/users/download/get_source2.html), after that in
the test/em_real directory, I used this command :*

cp namelist.input.jan00 namelist.input

*and then ./real.exe . i saw this :*


Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 REAL_EM V3.2.1 PREPROCESSOR
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,    104874600 bytes allocated
Time period #   1 to process = 2000-01-24_12:00:00.
Time period #   2 to process = 2000-01-24_18:00:00.
Time period #   3 to process = 2000-01-25_00:00:00.
Time period #   4 to process = 2000-01-25_06:00:00.
Time period #   5 to process = 2000-01-25_12:00:00.
Total analysis times to input =    5.

 -----------------------------------------------------------------------------

 Domain  1: Current date being processed: 2000-01-24_12:00:00.0000, which is
loop #   1 out of    5
 configflags%julyr, %julday, %gmt:        2000          24   12.00000
 metgrid input_wrf.F first_date_input = 2000-01-24_12:00:00
  metgrid input_wrf.F first_date_nml = 2000-01-24_12:00:00
 d01 2000-01-24_12:00:00 Timing for input          0 s.
 Max map factor in domain 1 =  1.03. Scale the dt in the model accordingly.
forrtl: severe (66): output statement overflows record, unit -5, file
Internal Formatted Write
Image              PC        Routine            Line
Source
real.exe           08DBF613  Unknown               Unknown  Unknown
real.exe           08DBE330  Unknown               Unknown  Unknown
real.exe           08D7B22E  Unknown               Unknown  Unknown
real.exe           08D32BBC  Unknown               Unknown  Unknown
real.exe           08D324BA  Unknown               Unknown  Unknown
real.exe           08D62029  Unknown               Unknown  Unknown
real.exe           08093551  Unknown               Unknown  Unknown
real.exe           0809C118  Unknown               Unknown  Unknown

*and after that , wrf.exe : i saw this *


Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     98194920 bytes allocated
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:      67
  program wrf: error opening wrfinput_d01 for reading ierr=
-1021


What should i do? please help me with this.

Best Regards



-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From kganbour at yahoo.com  Sun Mar 13 05:21:25 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Sun, 13 Mar 2011 04:21:25 -0700 (PDT)
Subject: [Wrf-users] [WRF-users]
Message-ID: <786644.29253.qm@web46307.mail.sp1.yahoo.com>

Dear All:
I have run WRF model for NMM&ARW by test data according the tutorial.
And now I run by real data for NMM WRF,but I have an error when I execute real.exe
I? attached namelist.input file and the error in real.log file

Best regards


Khaled



      
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From wrf at nusculus.com  Wed Mar  9 12:23:11 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Wed, 9 Mar 2011 12:23:11 -0700
Subject: [Wrf-users] WRF 3.2 Model not running after 4hrs of Integration.
In-Reply-To: <BLU152-w39AE089447A86098136EB88AC20@phx.gbl>
References: <BLU152-w4D3D9DC7BA60D09ABFAFE8AC30@phx.gbl>
	<4D703059.7000203@ucar.edu>
	<BLU152-w39AE089447A86098136EB88AC20@phx.gbl>
Message-ID: <AANLkTinrWM5_vgQoN0CNW=8D66bNH4z04k_BCf1gm0Fh@mail.gmail.com>

Hi Geeta,

I noticed that in your rsl.error.0003 file you had multiple CFL errors.
These were kind of hidden because you did not delete the rsl file between
running real.exe and wrf.exe.

When CFL errors occur, I often get segmentation faults, usually because the
radiation scheme. Segmentation faults can cause core dumps. If not caused by
the radiation scheme, maybe it occured in the Kains Fritsch cumulus scheme.
I say that because you did get the message: "WOULD GO OFF TOP: KF_ETA_PARA
I,J,DPTHMX,DPMIN 40 18 NaNQ 5000.000000" which includes a NaN.

To fix the CFL error, you may have to keep reducing the timestep, even
though yours is not long for your grid resolution. That may fix things.
If the timestep becomes impractically short, try adding some vertical
dampening:
  w_damping = 1
or play around a little with epssm:
  epssm = 0.3, 0.3, 0.3
Increasing the vertical size of grid cells might help too with CFL errors,
but you probably have those where you want them.

It will help you find the errors I found if you delete or remove the rsl
files before running wrf.exe.

best wishes,
Kevin

On Thu, Mar 3, 2011 at 9:32 PM, Geeta Geeta <geeta124 at hotmail.com> wrote:

>  Dear Sir,
> Thanks for the reply. I am running WRf 3.2 for the 3 domains 27, 9 and 3 km
> for the 48hrs Forecast on the IBM P570 Machine. The Operating system is
> AIX5.3 and the code is compiled using xlf with POE in place.
> I had given the command *bash$ time poe ../wrf.exe -procs 8. *
>
> 1. The model gave segmentation fault after 4hrs of Integration. I also
> plotted the Model forecast for 2nd and 3rd hour at 27km resolution (Domain
> 1) So it showed me some data being plotted
> *But when I tried to plot the output for the 2nd and 3rd domain, IT says ENTIRE
> GRID UNDEFINED. Kindly suggest.  *
>
> 2. >>>What data I have used ??
> *I am using the .grib2 files as Initial and BC taken from
> ftp://ftpprd.ncep.noaa.gov.in at 1x1 degree resolution.
> *
> 3. >>>What is the error message in your output file? Did you find any CFL
> violation?  Your namelist.input looks fine. Please send us error messages in
> your run.
> *I am attatching the rsl.error* and the rsl.out* files, namelist.input and
> namelist.wps files. It seems to me that there is no CFL violation. *
>
> Thanks.
> geeta
>
>
>
> ------------------------------
> Date: Thu, 3 Mar 2011 17:20:41 -0700
> From: wrfhelp at ucar.edu
> To: geeta124 at hotmail.com
> Subject: Re: WRF 3.2 Model not running after 4hrs of Integration.
>
> Geeta,
>
> What is the error message in your output file? Did you find any CFL
> violation?
>
> Your namelist.input looks fine. Please send us error messages in your run.
>
>
> On 3/3/2011 3:57 AM, Geeta Geeta wrote:
>
> Dear All,
> I am running WRF3.2 for 3 domains, at 27, 9 and 3kms.  After integrating
> for 4hours, the model  gives segmentation fault. and these directories are
> created and does not integrate beyond.
>
> bash-3.2$ ncdump -v Times wrfout_d01_2010-08-04_00:00:00
> Times =
>   "2010-08-04_00:00:00",
>   "2010-08-04_01:00:00",
>   "2010-08-04_02:00:00",
>   "2010-08-04_03:00:00",
>   "2010-08-04_04:00:00" ;
> }
>
> bash-3.2$ ncdump -v Times wrfout_d02_2010-08-04_00:00:00
> Times =
>   "2010-08-04_00:00:00",
>   "2010-08-04_01:00:00",
>   "2010-08-04_02:00:00",
>   "2010-08-04_03:00:00",
>   "2010-08-04_04:00:00" ;
>
> bash-3.2$ ncdump -v Times wrfout_d03_2010-08-04_00:00:00
> Times =
>   "2010-08-04_00:00:00",
>   "2010-08-04_01:00:00",
>   "2010-08-04_02:00:00",
>   "2010-08-04_03:00:00",
>   "2010-08-04_04:00:00" ;
>
> After integrating for 4hours, the model  gives segmentation fault. and
> these directories are created and does not integrate beyond.
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.5
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.3
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.2
> drwxr-xr-x    2            256 Mar 03 04:20 coredir.1
>
> Kindly help. The namelist.input file is also attached for reference.
>
> Geeta
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From andrew.porter at stfc.ac.uk  Tue Mar 15 03:28:21 2011
From: andrew.porter at stfc.ac.uk (Andrew Porter)
Date: Tue, 15 Mar 2011 09:28:21 +0000
Subject: [Wrf-users] Benchmarking problems
In-Reply-To: <1B8D1B9BF4DCDC4A90A42E312FF30852069D17E8@irvine01.irvine.environ.local>
References: <1B8D1B9BF4DCDC4A90A42E312FF30852069D17E8@irvine01.irvine.environ.local>
Message-ID: <4D7F3135.6090909@stfc.ac.uk>

Hi Bart,
>
> &domains
> ...snip...
>   numtiles                            = 1,
>   nproc_x                             = 3,
>   nproc_y                             = 2,
>   num_metgrid_levels                  = 40,
> /
>
> I set OMP_NUM_THREADS to 6 in my run script that calls wrf.exe.
>
> And yet, when I look in the resulting wrf.out file I see:
>
>   WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS =   6
>   WRF NUMBER OF TILES =   6
>
> Hey! I told you to use 1 tile and split it 3 by 2!
>
I think nproc_x and nproc_y only applies to MPI processes. By telling it 
to use only 1 tile I think you'll end up with 5 threads not doing 
anything! You can leave ntiles out to have it set to OMP_NUM_THREADS by 
default or you can set it > OMP_NUM_THREADS to see whether that fits 
things into cache more successfully.

God bless,

Andy.

-- 
Dr. Andrew Porter
Computational Scientist
Advanced Research Computing Group
Computational Science and Engineering Dept.
STFC Daresbury Laboratory
Keckwick Lane
Daresbury
WA4 4AD
Tel. : +44 (0)1925 603607
email: andrew.porter at stfc.ac.uk


From Craig.Tierney at noaa.gov  Mon Mar 14 14:30:59 2011
From: Craig.Tierney at noaa.gov (Craig Tierney)
Date: Mon, 14 Mar 2011 14:30:59 -0600
Subject: [Wrf-users] Benchmarking problems
In-Reply-To: <1B8D1B9BF4DCDC4A90A42E312FF30852069D17E8@irvine01.irvine.environ.local>
References: <1B8D1B9BF4DCDC4A90A42E312FF30852069D17E8@irvine01.irvine.environ.local>
Message-ID: <4D7E7B03.6060006@noaa.gov>

On 3/14/11 1:08 PM, Bart Brashers wrote:
> I'm trying to benchmark WRF on two comparable systems, Intel X5660 and
> AMD 6174, before I buy.  I'm also trying to do a benchmark for those of
> us who have many 5-day WRF runs to complete -- many runs with relatively
> low core counts, rather than a single run with large core counts (the
> focus of most benchmarks).
>
> I downloaded the WRF 3.0 Benchmark parts from
> http://www.mmm.ucar.edu/wrf/WG2/bench/.  I compiled using option 2
> (smpar for PGI/gcc) with no problems.  In the namelist.input I specified
> (for one particular run):
>
> &domains
> ...snip...
>   numtiles                            = 1,
>   nproc_x                             = 3,
>   nproc_y                             = 2,
>   num_metgrid_levels                  = 40,
> /
>
> I set OMP_NUM_THREADS to 6 in my run script that calls wrf.exe.
>
> And yet, when I look in the resulting wrf.out file I see:
>
>   WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS =   6
>   WRF NUMBER OF TILES =   6
>
> Hey! I told you to use 1 tile and split it 3 by 2!
>
> Is this a problem with WRF v3.0?  Looking at some WRF 3.2.1 runs where I
> have numtiles = 1 and specified 4 by 1, I got more verbose output like "
> WRF TILE   1 IS      1 IE    165 JS      1 JE     33".
>
> Scaling is poor after only 4 cores, so I suspect something is going
> wrong.  Any suggestions you have would be greatly appreciated.
>

I am not sure about the split, but I do know that at low core core counts
you are going to get better performance using MPI, even if you are only
using a single node.

If you are using OpenMP, you need to look into issues related to
socket-affinity to ensure that your OpenMP threads stay local to the
socket.  If you don't get the affinity right, it is going to hurt scalability.

Craig




> Bart
>
>
>
> This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

From mmkamal at sciborg.uwaterloo.ca  Mon Mar 14 18:38:54 2011
From: mmkamal at sciborg.uwaterloo.ca (mmkamal at sciborg.uwaterloo.ca)
Date: Mon, 14 Mar 2011 20:38:54 -0400
Subject: [Wrf-users] Model  is not running  with  CAM radiation scheme
Message-ID: <20110314203854.214378yszfv4l9wc@www.nexusmail.uwaterloo.ca>

Hi All,


I have been trying to run WRF 3.2 over North-Eastern Canada & USA  
using CAM shortwave and longwave radiation scheme. But I am having  
problem with those two radiation scheme although I have no problem  
with RRTM ( longwave radiation ) & Dudhia scheme (shortwave).


I am attaching the two namelist file and rsl.errro & rsl.out log file.  
Could anybody please help me about the problem.

Thanks in advance
Kamal




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 &time_control
 run_days                            = 5,
 run_hours                           = 0,
 run_minutes                         = 0,
 run_seconds                         = 0,
 start_year                          = 2008, 2008, 2008,
 start_month                         = 06,   06,   06,
 start_day                           = 21,   21,   21,
 start_hour                          = 00,   00,   00,
 start_minute                        = 00,   00,   00,
 start_second                        = 00,   00,   00,
 end_year                            = 2008, 2008, 2008,
 end_month                           = 06,   06,   06,
 end_day                             = 29,   29,   29,
 end_hour                            = 00,   00,   00,
 end_minute                          = 00,   00,   00,
 end_second                          = 00,   00,   00,
 interval_seconds                    = 10800
 input_from_file                     = .true.,.true.,.true.,
 history_interval                    = 180,   180,   180,
 frames_per_outfile                  = 1000,  1000,  1000,
 restart                             = .false.,
 restart_interval                    = 5000,
 io_form_history                     = 2
 io_form_restart                     = 2
 io_form_input                       = 2
 io_form_boundary                    = 2
 debug_level                         = 50
 /

 &domains
 time_step                           = 48,
 time_step_fract_num                 = 0,
 time_step_fract_den                 = 1,
 max_dom                             = 3,
 e_we                                = 225,   202,   181,
 e_sn                                = 175,   202,   271,
 e_vert                              = 28,    28,    28,
 p_top_requested                     = 10000,
 num_metgrid_levels                  = 30
 num_metgrid_soil_levels             = 4,
 dx                                  = 8000,  2666.666, 888.888,
 dy                                  = 8000,  2666.666, 888.888,
 grid_id                             = 1,     2,        3,
 parent_id                           = 1,     1,        2,
 i_parent_start                      = 1,     75,       70,
 j_parent_start                      = 1,     65,       50,
 parent_grid_ratio                   = 1,     3,        3,
 parent_time_step_ratio              = 1,     3,        3,
 feedback                            = 1,
 smooth_option                       = 0
 /

 &physics
 mp_physics                          = 6,     6,     6,
 ra_lw_physics                       = 3,     3,     3,
 ra_sw_physics                       = 3,     3,     3,
 radt                                = 8,     8,     8,
 cam_abs_freq_s                      = 21600 
 levsiz                              = 59 
 paerlev                             = 29 
 cam_abs_dim1                        = 4 
 cam_abs_dim2                        = 28
 sf_sfclay_physics                   = 1,     1,     1,
 sf_surface_physics                  = 3,     3,     3,
 bl_pbl_physics                      = 1,     1,     1,
 bldt                                = 0,     0,     0,
 cu_physics                          = 1,     0,     0,
 cudt                                = 5,     5,     5,
 isfflx                              = 1,
 ifsnow                              = 0,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 6,
 sf_urban_physics                    = 0, 0, 0,
 maxiens                             = 1,
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,
 /


 &dynamics
 w_damping                           = 0,
 diff_opt                            = 1,
 km_opt                              = 4,
 diff_6th_opt                        = 0,      0,      0,
 diff_6th_factor                     = 0.12,   0.12,   0.12,
 base_temp                           = 290.
 damp_opt                            = 0,
 zdamp                               = 5000.,  5000.,  5000.,
 dampcoef                            = 0.2,    0.2,    0.2
 khdif                               = 0,      0,      0,
 kvdif                               = 0,      0,      0,
 non_hydrostatic                     = .true., .true., .true.,
 moist_adv_opt                       = 1,      1,      1,     
 scalar_adv_opt                      = 1,      1,      1,     
 /

 &bdy_control
 spec_bdy_width                      = 5,
 spec_zone                           = 1,
 relax_zone                          = 4,
 specified                           = .true., .false.,.false.,
 nested                              = .false., .true., .true.,
 /

 &grib2
 /

 &namelist_quilt
 nio_tasks_per_group = 0,
 nio_groups = 1,
 /
-------------- next part --------------
&share
 wrf_core = 'ARW',
 max_dom = 3,

 start_date = '2008-06-21_00:00:00','2008-06-21_00:00:00', '2008-06-21_00:00:00',
 end_date   = '2008-06-29_00:00:00','2008-06-21_00:00:00', '2008-06-21_00:00:00',

 interval_seconds = 10800
 io_form_geogrid = 2,
/

&geogrid
 parent_id         =   1,    1,     2,
 parent_grid_ratio =   1,    3,     3,
 i_parent_start    =   1,    75,    70,
 j_parent_start    =   1,    65,    50,
 e_we              =  225,   202,   181,
 e_sn              =  175,   202,   271,
 geog_data_res = ?modis_30s+10m?, ?modis_30s+2m?, ?modis_30s+30s?

 dx = 8000,
 dy = 8000,
 map_proj = 'lambert',
 ref_lat   =  43.0,
 ref_lon   = -80.0,
 truelat1  =  30.0,
 truelat2  =  60.0,
 stand_lon = -80.0,
 geog_data_path =  '/work/kamal/brown/DATA/geog'
/

&ungrib
 out_format = 'WPS',
 prefix = 'NARR',
/

&metgrid
 fg_name = 'NARR'
 io_form_metgrid = 2,
 constants_name ='./NARRFIX:1979-11-08_00' 
/

&mod_levs
 press_pa = 201300 , 200100 , 100000 ,
             95000 ,  90000 ,
             85000 ,  80000 ,
             75000 ,  70000 ,
             65000 ,  60000 ,
             55000 ,  50000 ,
             45000 ,  40000 ,
             35000 ,  30000 ,
             25000 ,  20000 ,
             15000 ,  10000 ,
              5000 ,   1000
/

-------------- next part --------------
taskid: 18 hostname: bro61
  Ntasks in X            8, ntasks in Y           16
 NOTE: CAM radiation is in use, setting:  paerlev=29, levsiz=59, cam_abs_dim1=4,
  cam_abs_dim2=e_vert
 NOTE: num_soil_layers has been set to      6
 WRF V3.2 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1         225           1         175
  ims,ime,jms,jme           50          91          16          40
  ips,ipe,jps,jpe           57          84          23          33
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     29081796 bytes allocated
   wrf main: calling open_r_dataset for wrfinput
   med_initialdata_input: calling input_input
   mminlu = 'USGS'
   WRF TILE   1 IS     57 IE     84 JS     23 JE     33
   set_tiles3: NUMBER OF TILES =   1
 INPUT LandUse = "USGS"
    num_months =           13
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source             
wrf.exe            00000000014217C1  Unknown               Unknown  Unknown
wrf.exe            0000000001423821  Unknown               Unknown  Unknown
wrf.exe            00000000014225FA  Unknown               Unknown  Unknown
wrf.exe            00000000011A6D5A  Unknown               Unknown  Unknown
wrf.exe            0000000000D2D2D8  Unknown               Unknown  Unknown
wrf.exe            0000000000D27583  Unknown               Unknown  Unknown
wrf.exe            0000000000A8B6F7  Unknown               Unknown  Unknown
wrf.exe            00000000009CA6AE  Unknown               Unknown  Unknown
wrf.exe            00000000009C82E7  Unknown               Unknown  Unknown
wrf.exe            000000000047FBC2  Unknown               Unknown  Unknown
wrf.exe            000000000047F009  Unknown               Unknown  Unknown
wrf.exe            000000000047EFAC  Unknown               Unknown  Unknown
libc.so.6          00002ACA1BAA0994  Unknown               Unknown  Unknown
wrf.exe            000000000047EEB9  Unknown               Unknown  Unknown
-------------- next part --------------
  Ntasks in X            8, ntasks in Y           16
 NOTE: CAM radiation is in use, setting:  paerlev=29, levsiz=59, cam_abs_dim1=4,
  cam_abs_dim2=e_vert
 NOTE: num_soil_layers has been set to      6
 WRF V3.2 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1         225           1         175
  ims,ime,jms,jme          190         230          38          62
  ips,ipe,jps,jpe          197         225          45          55
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     28547296 bytes allocated
   wrf main: calling open_r_dataset for wrfinput
   med_initialdata_input: calling input_input
   mminlu = 'USGS'
   WRF TILE   1 IS    197 IE    225 JS     45 JE     55
   set_tiles3: NUMBER OF TILES =   1
 INPUT LandUse = "USGS"
 LANDUSE TYPE = "USGS" FOUND          33  CATEGORIES           2  SEASONS
  WATER CATEGORY =           16  SNOW CATEGORY =           24
  *** SATURATION VAPOR PRESSURE TABLE COMPLETED ***
    num_months =           13
 AEROSOLS:  Background aerosol will be limited to bottom            6 
  model interfaces.

From yagnesh at lowtem.hokudai.ac.jp  Mon Mar 14 15:15:36 2011
From: yagnesh at lowtem.hokudai.ac.jp (yagnesh)
Date: Tue, 15 Mar 2011 06:15:36 +0900
Subject: [Wrf-users] automation scripts to run real case.?
Message-ID: <4D7E8578.8030408@lowtem.hokudai.ac.jp>

Hello wrf-users.,

is there any scripts(perl/bash) to automate the real case simulation.?

-- 
yyr

From bbrashers at Environcorp.com  Wed Mar 16 13:04:05 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Wed, 16 Mar 2011 12:04:05 -0700
Subject: [Wrf-users] OpenMPI vs MPICH2
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF3085206A55C5A@irvine01.irvine.environ.local>

Has anyone done any benchmark testing of WRF dmpar using OpenMPI vs.
MPICH2?  Which one is "better" or "faster"?

Bart



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.

From FLiu at azmag.gov  Tue Mar 15 11:22:39 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Tue, 15 Mar 2011 17:22:39 +0000
Subject: [Wrf-users] Model  is not running  with  CAM radiation scheme
In-Reply-To: <20110314203854.214378yszfv4l9wc@www.nexusmail.uwaterloo.ca>
References: <20110314203854.214378yszfv4l9wc@www.nexusmail.uwaterloo.ca>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C25471F9F@mag9006>

Kamal,
Notice that you are using NARR as initials, and I am sure Noah land surface model is applicable for your case. You may check the number of soil layer should be 4 in Vtable.NARR (also see num_metgrid_soil_levels             = 4 in your namelist.input) other than 6 which is used for RUC land surface model. Double check surface physics scheme in your namelist.input, and replace RUC with Noah in it as below, you should be fine then.

Change 
sf_surface_physics                  = 3,     3,     3,
into
sf_surface_physics                  = 2,     2,     2,

I hope it will be helpful
Feng
-----Original Message-----
From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of mmkamal at sciborg.uwaterloo.ca
Sent: Monday, March 14, 2011 5:39 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] Model is not running with CAM radiation scheme

Hi All,


I have been trying to run WRF 3.2 over North-Eastern Canada & USA using CAM shortwave and longwave radiation scheme. But I am having problem with those two radiation scheme although I have no problem with RRTM ( longwave radiation ) & Dudhia scheme (shortwave).


I am attaching the two namelist file and rsl.errro & rsl.out log file.  
Could anybody please help me about the problem.

Thanks in advance
Kamal





From maria.frediani at gmail.com  Tue Mar 15 12:28:06 2011
From: maria.frediani at gmail.com (Maria Eugenia)
Date: Tue, 15 Mar 2011 14:28:06 -0400
Subject: [Wrf-users] problem installing wrf v3.2.1 with gcc v4.2.4
Message-ID: <AANLkTintxGBWArE5O6AjUs09wa4-jST6sq03LiC-F=AP@mail.gmail.com>

Dear all,

I'm trying to install WRFV3.2.1 (dmpar, without support for grib2 io)
in a SGI Altix 3700 IA64 Itanium 2.
I'm using gcc/gfortran v 4.2.4, netcdf v4.1.1, mpich2 v1.3.2 and libpng v1.2.12.
I have successfully built WRF V3.2, with the above configuration, but
the newest version does not compile completely.

After compiling for em_real, I only have wrf.exe in the WRFV3/main
directory, no real.exe nor any of the other executables that should be
there. I don't understand why wrf.exe compiles and real.exe
doesn't....

I also tried to compile it serial only, to exclude a possible problem
with mpich2, but the result is the same.
Maybe it is relevant to mention that ggc is not the default compiler,
the default is ifort 9.0. However I have checked the paths and
installed the required softwares with gcc (netcdf,mpich2,libpng).
Besides that, when I run ./configure, I only see options to use intel
compiler:
   1.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (serial)
   2.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (smpar)
   3.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (dmpar)
   4.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (dm+sm)
Therefore I created my configure.wrf file based on gcc. Anyway, I
don't believe this is the problem given that I successfully built v3.2
with the same configuration.

The configure.wrf file for the serial and dmpar build are attached as
well as the compile.log.
I sincerely appreciate your help.

Maria E. B. Frediani
-------------------------------------------------------------------------------------
Visiting Scholar
University of Connecticut
School of Engineering
261 Glenbrook Rd
Storrs, CT 06269
frediani at engr.uconn.edu
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From Don.Morton at alaska.edu  Wed Mar 16 19:15:38 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Wed, 16 Mar 2011 17:15:38 -0800
Subject: [Wrf-users] OpenMPI vs MPICH2
In-Reply-To: <1B8D1B9BF4DCDC4A90A42E312FF3085206A55C5A@irvine01.irvine.environ.local>
References: <1B8D1B9BF4DCDC4A90A42E312FF3085206A55C5A@irvine01.irvine.environ.local>
Message-ID: <AANLkTi=exOfPkLA1hBsdU+1zqcYmyaA-J2U-UGENhoWH@mail.gmail.com>

Bart, we missed you at the Alaska Weather Symposium this year!

The only comment I'll offer is that we were running WRF dmpar using MPICH2
on a Sun Opteron system:

http://www.arsc.edu/resources/midnight.html

compiled with PGI and on large problems, especially those with nests, we
found intermittent "hang" problems with the scatterv operation of the LBC's
to the tasks.   On certain domains, the hang would inevitably occur, but not
always at the same time.  Since we've moved to OpenMPI we haven't had the
issue.  Other users on this system have experienced the same.

Best,

Don



On Wed, Mar 16, 2011 at 11:04 AM, Bart Brashers
<bbrashers at environcorp.com>wrote:

> Has anyone done any benchmark testing of WRF dmpar using OpenMPI vs.
> MPICH2?  Which one is "better" or "faster"?
>
> Bart
>
>
>
> This message contains information that may be confidential, privileged or
> otherwise protected by law from disclosure. It is intended for the exclusive
> use of the Addressee(s). Unless you are the addressee or authorized agent of
> the addressee, you may not review, copy, distribute or disclose to anyone
> the message or any information contained within. If you have received this
> message in error, please contact the sender by electronic reply to
> email at environcorp.com and immediately delete all copies of the message.
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://www.arsc.edu/~morton/
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From ebeigi3 at tigers.lsu.edu  Wed Mar 16 17:02:54 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Wed, 16 Mar 2011 18:02:54 -0500
Subject: [Wrf-users] running real test case (em_real)
In-Reply-To: <AANLkTinCtBkMYEZuv77BeQ-1BhZVSJUokhCQnNdLCHKF@mail.gmail.com>
References: <AANLkTik2cqmY1BrsweEWDFDZQ_o-2bd98htm=O4a5TR6@mail.gmail.com>
	<4D7E8A8D.5030601@ucar.edu>
	<AANLkTinCtBkMYEZuv77BeQ-1BhZVSJUokhCQnNdLCHKF@mail.gmail.com>
Message-ID: <AANLkTi=CfW2QqR4LtkozY7SbEBeQi48SroUE3NDdX4mu@mail.gmail.com>

Dear Sir/Madam,

There are a lot of data on the website  you mentioned in your previous email
(http://dss.ucar.edu/datasets/ds083.2/), I downloaded some file, but i don't
know how to run them, could you please send me just an example for running
wrf? I always have this error (    MMINLU error on input), and i am not able
to run any of the test case. could you please help me with that?

Best Regards

Ehsan Beigi


On Mon, Mar 14, 2011 at 5:10 PM, Ehsan Beigi <ebeigi3 at tigers.lsu.edu> wrote:

> Thanks for you reply. yes, the compile is successful and i can see all of
> the .exe file except plotgride.exe and
>
> On Mon, Mar 14, 2011 at 4:37 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>
>>  Those warning message doesn't matter. My question is, have you
>> successfully built WRF and WPS? Did you see all those .exe files in your
>> directory?
>>
>> Can you download FNL data from http://dss.ucar.edu/datasets/ds083.2/ ,
>> then go through WPS process by yourself? I make this suggestion because
>> sometimes our data at website doesn't work for some users. We are not sure
>> what is the problem. usually we suggest our users to run WPS by themselves,
>> then move on to REAL and WRF.
>>
>>
>>
>>
>> On 3/13/2011 1:17 PM, Ehsan Beigi wrote:
>>
>> *Dear Sir/Madam,
>> my compiler is ifort and icc, i compiled em_real , and this is* compile.log
>>
>>
>> ar: creating ./libio_grib_share.a
>> ar: creating ../libio_grib1.a
>> ar: creating libesmf_time.a
>> ar: creating libfftpack.a
>> registry.c(22): warning #1079: return type of function "main" must be
>> "int"
>>   main( int argc, char *argv[], char *env[] )
>>   ^
>>
>> registry.c(59): warning #266: function "sym_forget" declared implicitly
>>     sym_forget() ;
>>     ^
>>
>> registry.c(131): warning #266: function "gen_io_boilerplate" declared
>> implicitly
>>     gen_io_boilerplate() ;  /* 20091213 jm.  Generate the
>> io_boilerplate_temporary.inc file */
>>     ^
>>
>> registry.c(133): warning #266: function "init_parser" declared implicitly
>>     init_parser() ;
>>     ^
>>
>> registry.c(156): warning #266: function "pre_parse" declared implicitly
>>     if ( pre_parse( dir, fp_in, fp_tmp ) ) {
>>          ^
>>
>> registry.c(176): warning #266: function "check_dimspecs" declared
>> implicitly
>>     check_dimspecs() ;
>>     ^
>>
>> registry.c(186): warning #266: function "gen_actual_args_new" declared
>> implicitly
>>     gen_actual_args_new( "inc" ) ;
>>     ^
>>
>> registry.c(188): warning #266: function "gen_dummy_args_new" declared
>> implicitly
>>     gen_dummy_args_new( "inc" ) ;
>>     ^
>>
>> registry.c(190): warning #266: function "gen_dummy_decls_new" declared
>> implicitly
>>     gen_dummy_decls_new( "inc" ) ;
>>     ^
>>
>> registry.c(192): warning #266: function "gen_namelist_statements" declared
>> implicitly
>>     gen_namelist_statements("inc") ;
>>     ^
>>
>> registry.c(202): warning #266: function "gen_nest_interp" declared
>> implicitly
>>     gen_nest_interp( "inc" ) ;
>>     ^
>>
>> registry.c(204): warning #266: function "gen_streams" declared implicitly
>>     gen_streams("inc") ;
>>     ^
>>
>> registry.c(207): warning #266: function "gen_comms" declared implicitly
>>     gen_comms( "inc" ) ;    /* this is either package supplied (by copying
>> a */
>>     ^
>>
>> reg_parse.c(227): warning #266: function "tolower" declared implicitly
>>             x = tolower(tokens[F_DIMS][i]) ;
>>                 ^
>>
>> reg_parse.c(292): warning #177: label "normal" was declared but never
>> referenced
>>   normal:
>>   ^
>>
>> reg_parse.c(453): warning #266: function "tolower" declared implicitly
>>       if ( tolower(tokens[FIELD_STAG][i]) == 'x' || sw_all_x_staggered )
>> field_struct->stag_x = 1 ;
>>            ^
>>
>> reg_parse.c(454): warning #266: function "tolower" declared implicitly
>>       if ( tolower(tokens[FIELD_STAG][i]) == 'y' || sw_all_y_staggered )
>> field_struct->stag_y = 1 ;
>>            ^
>>
>> reg_parse.c(455): warning #266: function "tolower" declared implicitly
>>       if ( tolower(tokens[FIELD_STAG][i]) == 'z' ) field_struct->stag_z =
>> 1 ;
>>            ^
>>
>> reg_parse.c(474): warning #266: function "tolower" declared implicitly
>>         x = tolower(tmp[i]) ;
>>             ^
>>
>> reg_parse.c(514): warning #266: function "tolower" declared implicitly
>>         x = tolower(tokens[FIELD_IO][i]) ;
>>             ^
>>
>> misc.c(175): warning #1011: missing return statement at end of non-void
>> function "range_of_dimension"
>>   }
>>   ^
>>
>> misc.c(217): warning #592: variable "zdex" is used before its value is set
>>             sprintf(tmp,"%ssm3%d,%ssm3%d,1,1", r,bdex,r,zdex ) ;
>>                                                         ^
>>
>> misc.c(321): warning #1011: missing return statement at end of non-void
>> function "get_elem"
>>   }
>>   ^
>>
>> misc.c(423): warning #1011: missing return statement at end of non-void
>> function "close_the_file"
>>   }
>>   ^
>>
>> misc.c(430): warning #266: function "getpid" declared implicitly
>>     sprintf(tempfile,"regtmp1%d",getpid()) ;
>>                                  ^
>>
>> misc.c(444): warning #266: function "getpid" declared implicitly
>>     sprintf(tempfile,"regtmp1%d",getpid()) ;
>>                                  ^
>>
>> misc.c(462): warning #266: function "toupper" declared implicitly
>>     for ( p = str ; *p ; p++ ) *p = toupper(*p) ;
>>                                     ^
>>
>> misc.c(472): warning #266: function "tolower" declared implicitly
>>     for ( p = str ; *p ; p++ ) *p = tolower(*p) ;
>>                                     ^
>>
>> misc.c(645): warning #1011: missing return statement at end of non-void
>> function "dimension_size_expression"
>>   }
>>   ^
>>
>> gen_allocs.c(73): warning #1011: missing return statement at end of
>> non-void function "get_count_for_alloc"
>>   }
>>   ^
>>
>> gen_allocs.c(109): warning #266: function "make_upper_case" declared
>> implicitly
>>       make_upper_case(dname_tmp) ;
>>       ^
>>
>> gen_scalar_indices.c(197): warning #266: function "make_lower_case"
>> declared implicitly
>>                     make_lower_case(fname)  ;
>>                     ^
>>
>> gen_config.c(135): warning #266: function "sym_forget" declared implicitly
>>     sym_forget() ;
>>     ^
>>
>> gen_config.c(167): warning #266: function "toupper" declared implicitly
>>                     fputc(toupper(*i),fp);
>>                           ^
>>
>> gen_config.c(172): warning #266: function "toupper" declared implicitly
>>                        fputc(toupper(*i),fp);
>>                              ^
>>
>> gen_config.c(178): warning #266: function "toupper" declared implicitly
>>                       fputc(toupper(*i),fp);
>>                             ^
>>
>> gen_config.c(409): warning #266: function "sym_forget" declared implicitly
>>     sym_forget() ;
>>     ^
>>
>> sym.c(73): warning #266: function "create_ht" declared implicitly
>>       create_ht( &symtab ) ;
>>       ^
>>
>> sym.c(77): warning #266: function "exit" declared implicitly
>>       exit(1) ;
>>       ^
>>
>> sym.c(153): warning #266: function "create_ht" declared implicitly
>>     create_ht( &symtab ) ;
>>     ^
>>
>> sym.c(157): warning #266: function "exit" declared implicitly
>>         exit(1) ;
>>         ^
>>
>> symtab_gen.c(62): warning #266: function "hash" declared implicitly
>>       index = hash( name ) ;
>>               ^
>>
>> gen_comms.c(157): warning #1011: missing return statement at end of
>> non-void function "print_4d_i1_decls"
>>   }
>>   ^
>>
>> gen_comms.c(196): warning #1011: missing return statement at end of
>> non-void function "print_decl"
>>     }
>>     ^
>>
>> gen_comms.c(206): warning #1011: missing return statement at end of
>> non-void function "print_body"
>>     }
>>     ^
>>
>> gen_comms.c(248): warning #266: function "make_upper_case" declared
>> implicitly
>>           make_upper_case(commname) ;
>>           ^
>>
>> gen_comms.c(266): warning #266: function "make_upper_case" declared
>> implicitly
>>         make_upper_case(commname) ;
>>         ^
>>
>> gen_comms.c(985): warning #266: function "make_upper_case" declared
>> implicitly
>>       make_upper_case(commname) ;
>>       ^
>>
>> gen_comms.c(1178): warning #266: function "make_upper_case" declared
>> implicitly
>>       make_upper_case(commname) ;
>>       ^
>>
>> gen_comms.c(1312): warning #266: function "make_upper_case" declared
>> implicitly
>>       make_upper_case(commname) ;
>>       ^
>>
>> gen_comms.c(1454): warning #266: function "make_upper_case" declared
>> implicitly
>>         make_upper_case(commname) ;
>>         ^
>>
>> gen_comms.c(1672): warning #268: the format string ends before this
>> argument
>>          sprintf(fname,"shift_halo",*direction) ;
>>                                     ^
>>
>> gen_comms.c(1949): warning #1011: missing return statement at end of
>> non-void function "gen_shift"
>>   }
>>   ^
>>
>> gen_comms.c(2428): warning #1011: missing return statement at end of
>> non-void function "gen_debug"
>>   }
>>   ^
>>
>> set_dim_strs.c(145): warning #1011: missing return statement at end of
>> non-void function "set_dim_strs"
>>   }
>>   ^
>>
>> set_dim_strs.c(153): warning #1011: missing return statement at end of
>> non-void function "set_dim_strs2"
>>   }
>>   ^
>>
>> set_dim_strs.c(159): warning #1011: missing return statement at end of
>> non-void function "set_dim_strs3"
>>   }
>>   ^
>>
>> gen_wrf_io.c(36): warning #266: function "sym_forget" declared implicitly
>>     OP_F(fp,"wrf_bdyout.inc") ;
>>     ^
>>
>> gen_wrf_io.c(452): warning #266: function "make_upper_case" declared
>> implicitly
>>             make_upper_case(dname) ;
>>             ^
>>
>> gen_streams.c(25): warning #266: function "gen_io_domain_defs" declared
>> implicitly
>>     gen_io_domain_defs( fp ) ;
>>     ^
>>
>> gen_streams.c(33): warning #266: function "gen_set_timekeeping_defs"
>> declared implicitly
>>     gen_set_timekeeping_defs( fp ) ;
>>     ^
>>
>> gen_streams.c(41): warning #266: function "gen_set_timekeeping_alarms"
>> declared implicitly
>>     gen_set_timekeeping_alarms( fp ) ;
>>     ^
>>
>> gen_streams.c(49): warning #266: function "gen_io_form_for_dataset"
>> declared implicitly
>>     gen_io_form_for_dataset( fp ) ;
>>     ^
>>
>> gen_streams.c(57): warning #266: function "gen_io_form_for_stream"
>> declared implicitly
>>     gen_io_form_for_stream( fp ) ;
>>     ^
>>
>> gen_streams.c(65): warning #266: function "gen_switches_and_alarms"
>> declared implicitly
>>     gen_switches_and_alarms( fp ) ;
>>     ^
>>
>> gen_streams.c(73): warning #266: function "gen_check_auxstream_alarms"
>> declared implicitly
>>     gen_check_auxstream_alarms( fp ) ;
>>     ^
>>
>> gen_streams.c(81): warning #266: function "gen_fine_stream_input" declared
>> implicitly
>>     gen_fine_stream_input( fp ) ;
>>     ^
>>
>> gen_streams.c(89): warning #266: function "gen_med_auxinput_in" declared
>> implicitly
>>     gen_med_auxinput_in( fp ) ;
>>     ^
>>
>> gen_streams.c(97): warning #266: function "gen_med_hist_out_opens"
>> declared implicitly
>>     gen_med_hist_out_opens( fp ) ;
>>     ^
>>
>> gen_streams.c(105): warning #266: function "gen_med_hist_out_closes"
>> declared implicitly
>>     gen_med_hist_out_closes( fp ) ;
>>     ^
>>
>> gen_streams.c(113): warning #266: function "gen_med_auxinput_in_closes"
>> declared implicitly
>>     gen_med_auxinput_in_closes( fp ) ;
>>     ^
>>
>> gen_streams.c(121): warning #266: function "gen_med_last_solve_io"
>> declared implicitly
>>     gen_med_last_solve_io( fp ) ;
>>     ^
>>
>> gen_streams.c(129): warning #266: function "gen_med_open_esmf_calls"
>> declared implicitly
>>     gen_med_open_esmf_calls( fp ) ;
>>     ^
>>
>> gen_streams.c(137): warning #266: function "gen_med_find_esmf_coupling"
>> declared implicitly
>>     gen_med_find_esmf_coupling( fp ) ;
>>     ^
>>
>> gen_streams.c(145): warning #266: function "gen_shutdown_closes" declared
>> implicitly
>>     gen_shutdown_closes( fp ) ;
>>     ^
>>
>> gen_streams.c(180): warning #1011: missing return statement at end of
>> non-void function "gen_io_domain_defs"
>>   }
>>   ^
>>
>> gen_streams.c(213): warning #1011: missing return statement at end of
>> non-void function "gen_set_timekeeping_defs"
>>   }
>>   ^
>>
>> gen_streams.c(296): warning #1011: missing return statement at end of
>> non-void function "gen_set_timekeeping_alarms"
>>   }
>>   ^
>>
>> gen_streams.c(323): warning #1011: missing return statement at end of
>> non-void function "gen_io_form_for_dataset"
>>   }
>>   ^
>>
>> gen_streams.c(350): warning #1011: missing return statement at end of
>> non-void function "gen_io_form_for_stream"
>>   }
>>   ^
>>
>> gen_streams.c(369): warning #1011: missing return statement at end of
>> non-void function "gen_switches_and_alarms"
>>   }
>>   ^
>>
>> gen_streams.c(400): warning #1011: missing return statement at end of
>> non-void function "gen_check_auxstream_alarms"
>>   }
>>   ^
>>
>> gen_streams.c(422): warning #1011: missing return statement at end of
>> non-void function "gen_fine_stream_input"
>>   }
>>   ^
>>
>> gen_streams.c(437): warning #1011: missing return statement at end of
>> non-void function "gen_med_auxinput_in"
>>   }
>>   ^
>>
>> gen_streams.c(452): warning #1011: missing return statement at end of
>> non-void function "gen_med_hist_out_opens"
>>   }
>>   ^
>>
>> gen_streams.c(468): warning #1011: missing return statement at end of
>> non-void function "gen_med_hist_out_closes"
>>   }
>>   ^
>>
>> gen_streams.c(484): warning #1011: missing return statement at end of
>> non-void function "gen_med_auxinput_in_closes"
>>   }
>>   ^
>>
>> gen_streams.c(497): warning #1011: missing return statement at end of
>> non-void function "gen_med_last_solve_io"
>>   }
>>   ^
>>
>> gen_streams.c(508): warning #1011: missing return statement at end of
>> non-void function "gen_shutdown_closes"
>>   }
>>   ^
>>
>> gen_streams.c(628): warning #1011: missing return statement at end of
>> non-void function "gen_io_boilerplate"
>>   }
>>   ^
>>
>> standard.c(43): warning #266: function "strncpy" declared implicitly
>>           strncpy(q,p,4) ; q+=4 ;
>>           ^
>>
>> standard.c(54): warning #266: function "strncmp" declared implicitly
>>           if ( !strncmp( wrf_error_fatal_str, "wrf_error_fatal", 15 ) &&
>> wrf_error_fatal_str[15] != '3' )
>>                 ^
>>
>> standard.c(78): warning #266: function "strcpy" declared implicitly
>>             strcpy(lineo,p+3+ns) ;
>>             ^
>>
>> standard.c(88): warning #266: function "strcat" declared implicitly
>>               strcat(lineo,linei) ;
>>               ^
>>
>> standard.c(166): warning #1011: missing return statement at end of
>> non-void function "drop_comment"
>>   }
>>   ^
>>
>> standard.c(176): warning #1011: missing return statement at end of
>> non-void function "change_to_lower"
>>   }
>>   ^
>>
>> opening Registry/registry.dimspec
>> including Registry/registry.dimspec
>> opening Registry/registry.les
>> including Registry/registry.les
>> opening Registry/registry.io_boilerplate
>> including Registry/registry.io_boilerplate
>> opening Registry/io_boilerplate_temporary.inc
>> including Registry/io_boilerplate_temporary.inc
>> opening Registry/registry.fire
>> including Registry/registry.fire
>> opening Registry/registry.avgflx
>> including Registry/registry.avgflx
>> Registry INFO variable counts: 0d 1823 1d 69 2d 469 3d 281
>> ADVISORY: RSL_LITE version of gen_comms is linked in with registry
>> program.
>> ar: creating ../main/libwrflib.a
>>
>>
>> *and then downloaded the  WRF Model Test Data (January 2000 WPS output
>> data: <http://www.mmm.ucar.edu/wrf/src/data/jan00_wps.tar.gz>
>> http://www.mmm.ucar.edu/wrf/users/download/get_source2.html), after that
>> in the test/em_real directory, I used this command :*
>>
>> cp namelist.input.jan00 namelist.input
>>
>> *and then ./real.exe . i saw this :*
>>
>>
>> Namelist dfi_control not found in namelist.input. Using registry defaults
>> for v
>>  ariables in dfi_control
>>  Namelist tc not found in namelist.input. Using registry defaults for
>> variables
>>  in tc
>>  Namelist scm not found in namelist.input. Using registry defaults for
>> variables
>>   in scm
>>  Namelist fire not found in namelist.input. Using registry defaults for
>> variable
>>  s in fire
>>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
>> auxinput4_interval
>>   = 0 for all domains
>>  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
>> ending t
>>  ime to 0 for that domain.
>>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
>> setting
>>   sgfdda interval and ending time to 0 for that domain.
>>  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
>> interval an
>>  d ending time to 0 for that domain.
>>  --- NOTE: num_soil_layers has been set to      4
>>  REAL_EM V3.2.1 PREPROCESSOR
>>   *************************************
>>   Parent domain
>>   ids,ide,jds,jde            1          74           1          61
>>   ims,ime,jms,jme           -4          79          -4          66
>>   ips,ipe,jps,jpe            1          74           1          61
>>   *************************************
>>  DYNAMICS OPTION: Eulerian Mass Coordinate
>>     alloc_space_field: domain            1,    104874600 bytes allocated
>> Time period #   1 to process = 2000-01-24_12:00:00.
>> Time period #   2 to process = 2000-01-24_18:00:00.
>> Time period #   3 to process = 2000-01-25_00:00:00.
>> Time period #   4 to process = 2000-01-25_06:00:00.
>> Time period #   5 to process = 2000-01-25_12:00:00.
>> Total analysis times to input =    5.
>>
>>
>>  -----------------------------------------------------------------------------
>>
>>  Domain  1: Current date being processed: 2000-01-24_12:00:00.0000, which
>> is loop #   1 out of    5
>>  configflags%julyr, %julday, %gmt:        2000          24   12.00000
>>  metgrid input_wrf.F first_date_input = 2000-01-24_12:00:00
>>   metgrid input_wrf.F first_date_nml = 2000-01-24_12:00:00
>>  d01 2000-01-24_12:00:00 Timing for input          0 s.
>>  Max map factor in domain 1 =  1.03. Scale the dt in the model
>> accordingly.
>> forrtl: severe (66): output statement overflows record, unit -5, file
>> Internal Formatted Write
>> Image              PC        Routine            Line
>> Source
>> real.exe           08DBF613  Unknown               Unknown  Unknown
>> real.exe           08DBE330  Unknown               Unknown  Unknown
>> real.exe           08D7B22E  Unknown               Unknown  Unknown
>> real.exe           08D32BBC  Unknown               Unknown  Unknown
>> real.exe           08D324BA  Unknown               Unknown  Unknown
>> real.exe           08D62029  Unknown               Unknown  Unknown
>> real.exe           08093551  Unknown               Unknown  Unknown
>> real.exe           0809C118  Unknown               Unknown  Unknown
>>
>> *and after that , wrf.exe : i saw this *
>>
>>
>> Namelist dfi_control not found in namelist.input. Using registry defaults
>> for v
>>  ariables in dfi_control
>>  Namelist tc not found in namelist.input. Using registry defaults for
>> variables
>>  in tc
>>  Namelist scm not found in namelist.input. Using registry defaults for
>> variables
>>   in scm
>>  Namelist fire not found in namelist.input. Using registry defaults for
>> variable
>>  s in fire
>>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
>> auxinput4_interval
>>   = 0 for all domains
>>  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
>> ending t
>>  ime to 0 for that domain.
>>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
>> setting
>>   sgfdda interval and ending time to 0 for that domain.
>>  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
>> interval an
>>  d ending time to 0 for that domain.
>>  --- NOTE: num_soil_layers has been set to      4
>>  WRF V3.2.1 MODEL
>>   *************************************
>>   Parent domain
>>   ids,ide,jds,jde            1          74           1          61
>>   ims,ime,jms,jme           -4          79          -4          66
>>   ips,ipe,jps,jpe            1          74           1          61
>>   *************************************
>>  DYNAMICS OPTION: Eulerian Mass Coordinate
>>     alloc_space_field: domain            1,     98194920 bytes allocated
>>  -------------- FATAL CALLED ---------------
>>  FATAL CALLED FROM FILE:  <stdin>  LINE:      67
>>   program wrf: error opening wrfinput_d01 for reading ierr=
>> -1021
>>
>>
>> What should i do? please help me with this.
>>
>> Best Regards
>>
>>
>>
>> --
>> *Ehsan Beigi*
>> *PhD Student*
>> *Department of Civil and and Environmental Engineering
>> 2408 Patrick F. Taylor Hall
>> Louisiana State University
>> Baton Rouge, LA, 70803*
>>
>>
>>
>>
>
>
> --
> *Ehsan Beigi*
> *PhD Student*
> *Department of Civil and and Environmental Engineering
> 2408 Patrick F. Taylor Hall
> Louisiana State University
> Baton Rouge, LA, 70803*
>
>
>


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From ebeigi3 at tigers.lsu.edu  Thu Mar 17 15:09:33 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Thu, 17 Mar 2011 16:09:33 -0500
Subject: [Wrf-users] namelist.input file
Message-ID: <AANLkTin++AYkzjmECu-kx2KMp63g7e=Ca-nD0gmCs_0x@mail.gmail.com>

i am running the real test case which is mentioned on the "ARW USER GUIDE"
manual on page 93 , Real Data Test Case: 2000 January 24/12 through 25/12  ,
i already installed WPS , i have this error when i type ./real.exe

Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 REAL_EM V3.2.1 PREPROCESSOR
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,    104874600 bytes allocated
Time period #   1 to process = 2000-01-24_12:00:00.
Time period #   2 to process = 2000-01-24_18:00:00.
Time period #   3 to process = 2000-01-25_00:00:00.
Time period #   4 to process = 2000-01-25_06:00:00.
Time period #   5 to process = 2000-01-25_12:00:00.
Total analysis times to input =    5.

 -----------------------------------------------------------------------------

 Domain  1: Current date being processed: 2000-01-24_12:00:00.0000, which is
loop #   1 out of    5
 configflags%julyr, %julday, %gmt:        2000          24   12.00000
 metgrid input_wrf.F first_date_input = 2000-01-24_12:00:00
  metgrid input_wrf.F first_date_nml = 2000-01-24_12:00:00
 d01 2000-01-24_12:00:00 Timing for input          0 s.
 Max map factor in domain 1 =  1.03. Scale the dt in the model accordingly.
forrtl: severe (66): output statement overflows record, unit -5, file
Internal Formatted Write
Image              PC        Routine            Line
Source
real.exe           08DBF613  Unknown               Unknown  Unknown
real.exe           08DBE330  Unknown               Unknown  Unknown
real.exe           08D7B22E  Unknown               Unknown  Unknown
real.exe           08D32BBC  Unknown               Unknown  Unknown
real.exe           08D324BA  Unknown               Unknown  Unknown
real.exe           08D62029  Unknown               Unknown  Unknown
real.exe           08093551  Unknown               Unknown  Unknown
real.exe           0809C118  Unknown               Unknown  Unknown
 and when i type ./wrf,exe, i can see this
Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     98194920 bytes allocated
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:      67
  program wrf: error opening wrfinput_d01 for reading ierr=       -1021


i think the problem is ralated to the input file, could you please send me
an input file for jan 00 em_real test case?

Best Regards




-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From ebeigi3 at tigers.lsu.edu  Fri Mar 18 14:25:46 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Fri, 18 Mar 2011 15:25:46 -0500
Subject: [Wrf-users] running the real test case
Message-ID: <AANLkTi=DG-YwqF2=yuE-qYbWCKuAuHH1QnSAyieSFsSb@mail.gmail.com>

i am running the real test case which is mentioned on the "ARW USER GUIDE"
manual on page 93 , Real Data Test Case: 2000 January 24/12 through 25/12  ,
i already installed WPS , i have this error when i type ./real.exe

Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 REAL_EM V3.2.1 PREPROCESSOR
  ******************************
*******
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,    104874600 bytes allocated
Time period #   1 to process = 2000-01-24_12:00:00.
Time period #   2 to process = 2000-01-24_18:00:00.
Time period #   3 to process = 2000-01-25_00:00:00.
Time period #   4 to process = 2000-01-25_06:00:00.
Time period #   5 to process = 2000-01-25_12:00:00.
Total analysis times to input =    5.

 -----------------------------------------------------------------------------

 Domain  1: Current date being processed: 2000-01-24_12:00:00.0000, which is
loop #   1 out of    5
 configflags%julyr, %julday, %gmt:        2000          24   12.00000
 metgrid input_wrf.F first_date_input = 2000-01-24_12:00:00
  metgrid input_wrf.F first_date_nml = 2000-01-24_12:00:00
 d01 2000-01-24_12:00:00 Timing for input          0 s.
 Max map factor in domain 1 =  1.03. Scale the dt in the model accordingly.
forrtl: severe (66): output statement overflows record, unit -5, file
Internal Formatted Write
Image              PC        Routine            Line
Source
real.exe           08DBF613  Unknown               Unknown  Unknown
real.exe           08DBE330  Unknown               Unknown  Unknown
real.exe           08D7B22E  Unknown               Unknown  Unknown
real.exe           08D32BBC  Unknown               Unknown  Unknown
real.exe           08D324BA  Unknown               Unknown  Unknown
real.exe           08D62029  Unknown               Unknown  Unknown
real.exe           08093551  Unknown               Unknown  Unknown
real.exe           0809C118  Unknown               Unknown  Unknown
 and when i type ./wrf,exe, i can see this
Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1          74           1          61
  ims,ime,jms,jme           -4          79          -4          66
  ips,ipe,jps,jpe            1          74           1          61
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     98194920 bytes allocated
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:      67
  program wrf: error opening wrfinput_d01 for reading ierr=       -1021


i think the problem is ralated to the input file, could you please send me
an input file for jan 00 em_real test case?

Best Regards




-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*



-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From mmkamal at sciborg.uwaterloo.ca  Thu Mar 17 19:50:09 2011
From: mmkamal at sciborg.uwaterloo.ca (mmkamal at sciborg.uwaterloo.ca)
Date: Thu, 17 Mar 2011 21:50:09 -0400
Subject: [Wrf-users] Model is crashing with CAM shortwave scheme
Message-ID: <20110317215009.11151ig42kp8yr8k@www.nexusmail.uwaterloo.ca>

Hi All,


After finishing a successful run with Dudhia shortwave scheme I tried  
to use CAM shortwave scheme but could not succeed. I was wondering  
whether any one faced the same problem while using CAM radiation  
scheme. I get the following error message:



taskid: 0 hostname: bro95
Namelist fdda not found in namelist.input. Using registry defaults for  
variable
s in fdda
Namelist dfi_control not found in namelist.input. Using registry  
defaults for v
ariables in dfi_control
Namelist tc not found in namelist.input. Using registry defaults for variables
in tc
Namelist scm not found in namelist.input. Using registry defaults for  
variables
in scm
Namelist fire not found in namelist.input. Using registry defaults for  
variable
s in fire
Ntasks in X 2, ntasks in Y 4
NOTE: CAM radiation is in use, setting: paerlev=29, levsiz=59, cam_abs_dim1=4,
cam_abs_dim2=e_vert
NOTE: num_soil_layers has been set to 4
WRF V3.2 MODEL
wrf: calling alloc_and_configure_domain
*************************************
Parent domain
ids,ide,jds,jde 1 225 1 175
ims,ime,jms,jme -4 119 -4 51
ips,ipe,jps,jpe 1 112 1 44
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1, 184262200 bytes allocated
wrf: calling model_to_grid_config_rec
wrf: calling set_scalar_indices_from_config
wrf: calling init_wrfio
Entering ext_gr1_ioinit
setup_timekeeping: set xtime to 0.0000000E+00
setup_timekeeping: set julian to 172.0000
setup_timekeeping: returning...
wrf main: calling open_r_dataset for wrfinput
med_initialdata_input: calling input_input
input_wrf: set xtime to 0.0000000E+00
mminlu = 'USGS'
med_initialdata_input: back from input_input
checking boundary conditions for grid
boundary conditions OK for grid
start_domain_em: Before call to phy_init
WRF TILE 1 IS 1 IE 112 JS 1 JE 44
set_tiles3: NUMBER OF TILES = 1
top of phy_init
phy_init: start_of_simulation = T
calling nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
after nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
top of landuse_init
INPUT LandUse = "USGS"
returning from of landuse_init
reading CAM_ABS_DATA
num_months = 13
reading CAM_AEROPT_DATA
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
wrf.exe 00000000014217C1 Unknown Unknown Unknown
wrf.exe 0000000001423821 Unknown Unknown Unknown
wrf.exe 00000000014225FA Unknown Unknown Unknown
wrf.exe 00000000011A6D5A Unknown Unknown Unknown
wrf.exe 0000000000D2DB60 Unknown Unknown Unknown
wrf.exe 0000000000D27583 Unknown Unknown Unknown
wrf.exe 0000000000A8B6F7 Unknown Unknown Unknown
wrf.exe 00000000009CA6AE Unknown Unknown Unknown
wrf.exe 00000000009C82E7 Unknown Unknown Unknown
wrf.exe 000000000047FBC2 Unknown Unknown Unknown
wrf.exe 000000000047F009 Unknown Unknown Unknown
wrf.exe 000000000047EFAC Unknown Unknown Unknown
libc.so.6 00002AE11F2F9994 Unknown Unknown Unknown
wrf.exe 000000000047EEB9 Unknown Unknown Unknown



############################################################################
### The namelist.input file I am using is given below ##############
############################################################################
&time_control
run_days = 5,
run_hours = 0,
run_minutes = 0,
run_seconds = 0,
start_year = 2008, 2008, 2008,
start_month = 06, 06, 06,
start_day = 21, 21, 21,
start_hour = 00, 00, 00,
start_minute = 00, 00, 00,
start_second = 00, 00, 00,
end_year = 2008, 2008, 2008,
end_month = 06, 06, 06,
end_day = 29, 29, 29,
end_hour = 00, 00, 00,
end_minute = 00, 00, 00,
end_second = 00, 00, 00,
interval_seconds = 10800
input_from_file = .true.,.true.,.true.,
history_interval = 180, 180, 180,
frames_per_outfile = 1000, 1000, 1000,
restart = .false.,
restart_interval = 5000,
io_form_history = 2
io_form_restart = 2
io_form_input = 2
io_form_boundary = 2
debug_level = 100
/

&domains
time_step = 48,
time_step_fract_num = 0,
time_step_fract_den = 1,
max_dom = 3,
e_we = 225, 202, 181,
e_sn = 175, 202, 271,
e_vert = 28, 28, 28,
p_top_requested = 10000,
num_metgrid_levels = 30
num_metgrid_soil_levels = 4,
dx = 8000, 2666.666, 888.888,
dy = 8000, 2666.666, 888.888,
grid_id = 1, 2, 3,
parent_id = 1, 1, 2,
i_parent_start = 1, 75, 70,
j_parent_start = 1, 65, 50,
parent_grid_ratio = 1, 3, 3,
parent_time_step_ratio = 1, 3, 3,
feedback = 1,
smooth_option = 0
/
&physics
mp_physics = 6, 6, 6,
ra_lw_physics = 1, 1, 1,
ra_sw_physics = 3, 3, 3,
radt = 8, 8, 8,
sf_sfclay_physics = 1, 1, 1,
sf_surface_physics = 2, 2, 2,
bl_pbl_physics = 1, 1, 1,
bldt = 0, 0, 0,
cu_physics = 1, 0, 0,
cudt = 5, 5, 5,
isfflx = 1,
ifsnow = 0,
icloud = 1,
surface_input_source = 1,
num_soil_layers = 4,
sf_urban_physics = 0, 0, 0,
maxiens = 1,
maxens = 3,
maxens2 = 3,
maxens3 = 16,
ensdim = 144,
/
&dynamics
w_damping = 0,
diff_opt = 1,
km_opt = 4,
diff_6th_opt = 0, 0, 0,
diff_6th_factor = 0.12, 0.12, 0.12,
base_temp = 290.
damp_opt = 0,
zdamp = 5000., 5000., 5000.,
dampcoef = 0.2, 0.2, 0.2
khdif = 0, 0, 0,
kvdif = 0, 0, 0,
non_hydrostatic = .true., .true., .true.,
moist_adv_opt = 1, 1, 1,
scalar_adv_opt = 1, 1, 1,
/

&bdy_control
spec_bdy_width = 5,
spec_zone = 1,
relax_zone = 4,
specified = .true., .false.,.false.,
nested = .false., .true., .true.,
/

&grib2
/

&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/

############################################################################
### The namelist.wps file I am using is given below ##############
############################################################################

&share
wrf_core = 'ARW',
max_dom = 3,

start_date = '2008-06-21_00:00:00','2008-06-21_00:00:00',  
'2008-06-21_00:00:00',
end_date = '2008-06-29_00:00:00','2008-06-21_00:00:00', '2008-06-21_00:00:00',

interval_seconds = 10800
io_form_geogrid = 2,
/

&geogrid
parent_id = 1, 1, 2,
parent_grid_ratio = 1, 3, 3,
i_parent_start = 1, 75, 70,
j_parent_start = 1, 65, 50,
e_we = 225, 202, 181,
e_sn = 175, 202, 271,
geog_data_res = ?modis_30s+5m?, ?modis_30s+2m?, ?modis_30s+30s?

dx = 8000,
dy = 8000,
map_proj = 'lambert',
ref_lat = 43.0,
ref_lon = -80.0,
truelat1 = 30.0,
truelat2 = 60.0,
stand_lon = -80.0,
geog_data_path = '/work/kamal/brown/DATA/geog'
/

&ungrib
out_format = 'WPS',
prefix = 'NARR',
/

&metgrid
fg_name = 'NARR'
io_form_metgrid = 2,
constants_name ='./NARRFIX:1979-11-08_00'
/

&mod_levs
press_pa = 201300 , 200100 , 100000 ,
95000 , 90000 ,
85000 , 80000 ,
75000 , 70000 ,
65000 , 60000 ,
55000 , 50000 ,
45000 , 40000 ,
35000 , 30000 ,
25000 , 20000 ,
15000 , 10000 ,
5000 , 1000
/





So, it only seems to be a problem (for me) when I use CAM shortwave  
scheme instead of Dudhia scheme. Does anyone know the reason for this ?




Thanks
Kamal










From thomas.schwitalla at uni-hohenheim.de  Thu Mar 17 06:37:54 2011
From: thomas.schwitalla at uni-hohenheim.de (Thomas Schwitalla)
Date: Thu, 17 Mar 2011 13:37:54 +0100
Subject: [Wrf-users] Wrf-users Digest, Vol 79, Issue 19
In-Reply-To: <mailman.425.1300305220.2198.wrf-users@ucar.edu>
References: <mailman.425.1300305220.2198.wrf-users@ucar.edu>
Message-ID: <4D8200A2.1050103@uni-hohenheim.de>

Dear Maria,

the problems are the "intent(in)" and "intent(out)" statements at line 
2363/2364 of dyn_em/module_initialize_real.F . Try to delete the intent 
statements, it should help for gfortran 4.2.4. The other way would be to 
upgrade to gfortran 4.3.x which can handle these pointer declarations 
without problems.

Best regards,
Thomas

Am 16.03.2011 20:53, schrieb wrf-users-request at ucar.edu:
> Message: 3
> Date: Tue, 15 Mar 2011 14:28:06 -0400
> From: Maria Eugenia<maria.frediani at gmail.com>
> Subject: [Wrf-users] problem installing wrf v3.2.1 with gcc v4.2.4
> To: wrf-users at ucar.edu
> Message-ID:
> 	<AANLkTintxGBWArE5O6AjUs09wa4-jST6sq03LiC-F=AP at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Dear all,
>
> I'm trying to install WRFV3.2.1 (dmpar, without support for grib2 io)
> in a SGI Altix 3700 IA64 Itanium 2.
> I'm using gcc/gfortran v 4.2.4, netcdf v4.1.1, mpich2 v1.3.2 and libpng v1.2.12.
> I have successfully built WRF V3.2, with the above configuration, but
> the newest version does not compile completely.
>
> After compiling for em_real, I only have wrf.exe in the WRFV3/main
> directory, no real.exe nor any of the other executables that should be
> there. I don't understand why wrf.exe compiles and real.exe
> doesn't....
>
> I also tried to compile it serial only, to exclude a possible problem
> with mpich2, but the result is the same.
> Maybe it is relevant to mention that ggc is not the default compiler,
> the default is ifort 9.0. However I have checked the paths and
> installed the required softwares with gcc (netcdf,mpich2,libpng).
> Besides that, when I run ./configure, I only see options to use intel
> compiler:
>     1.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (serial)
>     2.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (smpar)
>     3.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (dmpar)
>     4.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (dm+sm)
> Therefore I created my configure.wrf file based on gcc. Anyway, I
> don't believe this is the problem given that I successfully built v3.2
> with the same configuration.
>
> The configure.wrf file for the serial and dmpar build are attached as
> well as the compile.log.
> I sincerely appreciate your help.
>
> Maria E. B. Frediani
> -------------------------------------------------------------------------------------
> Visiting Scholar
> University of Connecticut
> School of Engineering
> 261 Glenbrook Rd
> Storrs, CT 06269
> frediani at engr.uconn.edu
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>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 79, Issue 19
> *****************************************

From ahsanshah01 at gmail.com  Fri Mar 18 21:51:55 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Sat, 19 Mar 2011 08:51:55 +0500
Subject: [Wrf-users] Error Ungrib
Message-ID: <AANLkTik=7fGkoTvUTHpbsBT5LMbFRANmMajMia9+6FHW@mail.gmail.com>

Hello,

 I am trying to run WPS with NCEP GFS 1.0deg Global model data  at 00Z with
analysis and 180 hour forecasts included in each file. Forecast variables
are available at 3 hour intervals. But ./ungrib.exe is giving following
error. Namelist.wps attached.
Please help me.

*[pmdtest at pmd02 wps]$ ./ungrib.exe *
* *** Starting program ungrib.exe ****
*Start_date =  2010-07-20_00:00:00 ,      End_date = 2010-07-21_00:00:00*
*output format is WPS*
*Path to intermediate files is ./*
* ungrib - grib edition num           2*
*
*
*
###############################################################################
*
*
*
*Inventory for date = 2010-07-20 00:00:00*
*
*
*PRES   TT       UU       VV       RH       HGT      PSFC     PMSL
SM000010 SM010040 SM040100 SM100200 SM010200 ST000010 ST010040 ST040100
ST100200 ST010200 SEAICE   LANDSEA  SOILHGT  SKINTEMP SNOW     SOILCAT
 VEGCAT  *
*
-------------------------------------------------------------------------------
*
*2013.0  O        O        O        O        O        O        X        O
     O        O        O        O        O        O        O        O
 O        O        O        O        O        O        O        O      *
*2001.0  X        X        X        X        O        X        O        X
     X        X        X        O        X        X        X        X
 O        X        X        X        X        X        O        O      *
*1000.0  X        X        X        X        X

                                                                      *
* 975.0  X        X        X        X        X

                                                                      *
* 950.0  X        X        X        X        X

                                                                      *
* 925.0  X        X        X        X        X

                                                                      *
* 900.0  X        X        X        X        X

                                                                      *
* 850.0  X        X        X        X        X

                                                                      *
* 800.0  X        X        X        X        X

                                                                      *
* 750.0  X        X        X        X        X

                                                                      *
* 700.0  X        X        X        X        X

                                                                      *
* 650.0  X        X        X        X        X

                                                                      *
* 600.0  X        X        X        X        X

                                                                      *
* 550.0  X        X        X        X        X

                                                                      *
* 500.0  X        X        X        X        X

                                                                      *
* 450.0  X        X        X        X        X

                                                                      *
* 400.0  X        X        X        X        X

                                                                      *
* 350.0  X        X        X        X        X

                                                                      *
* 300.0  X        X        X        X        X

                                                                      *
* 250.0  X        X        X        X        X

                                                                      *
* 200.0  X        X        X        X        X

                                                                      *
* 150.0  X        X        X        X        X

                                                                      *
* 100.0  X        X        X        X        X

                                                                      *
*  70.0  X        X        X        X        X

                                                                      *
*  50.0  X        X        X        X        X

                                                                      *
*  30.0  X        X        X        X        X

                                                                      *
*  20.0  X        X        X                 X

                                                                      *
*  10.0  X        X        X        X        X

                                                                      *
*
-------------------------------------------------------------------------------
*
* Begin rrpr*
*Interpolating to fill in RH at level     2000*
*
*
*
###############################################################################
*
*
*
*Inventory for date = 2010-07-20 00:00:00*
*
*
*PRES   TT       UU       VV       RH       HGT      PSFC     PMSL
SM000010 SM010040 SM040100 SM100200 SM010200 ST000010 ST010040 ST040100
ST100200 ST010200 SEAICE   LANDSEA  SOILHGT  SKINTEMP SNOW     SOILCAT
 VEGCAT  *
*
-------------------------------------------------------------------------------
*
*2013.0  O        O        O        O        O        O        X        O
     O        O        O        O        O        O        O        O
 O        O        O        O        O        O        O        O      *
*2001.0  X        X        X        X        O        X        O        X
     X        X        X        O        X        X        X        X
 O        X        X        X        X        X        O        O      *
*1000.0  X        X        X        X        X

                                                                      *
* 975.0  X        X        X        X        X

                                                                      *
* 950.0  X        X        X        X        X

                                                                      *
* 925.0  X        X        X        X        X

                                                                      *
* 900.0  X        X        X        X        X

                                                                      *
* 850.0  X        X        X        X        X

                                                                      *
* 800.0  X        X        X        X        X

                                                                      *
* 750.0  X        X        X        X        X

                                                                      *
* 700.0  X        X        X        X        X

                                                                      *
* 650.0  X        X        X        X        X

                                                                      *
* 600.0  X        X        X        X        X

                                                                      *
* 550.0  X        X        X        X        X

                                                                      *
* 500.0  X        X        X        X        X

                                                                      *
* 450.0  X        X        X        X        X

                                                                      *
* 400.0  X        X        X        X        X

                                                                      *
* 350.0  X        X        X        X        X

                                                                      *
* 300.0  X        X        X        X        X

                                                                      *
* 250.0  X        X        X        X        X

                                                                      *
* 200.0  X        X        X        X        X

                                                                      *
* 150.0  X        X        X        X        X

                                                                      *
* 100.0  X        X        X        X        X

                                                                      *
*  70.0  X        X        X        X        X

                                                                      *
*  50.0  X        X        X        X        X

                                                                      *
*  30.0  X        X        X        X        X

                                                                      *
*  20.0  X        X        X        X        X

                                                                      *
*  10.0  X        X        X        X        X

                                                                      *
*
-------------------------------------------------------------------------------
*
*Subroutine DATINT: Interpolating 3-d files to fill in any missing data...*
*Looking for data at time 2010-07-20_00*
*Found file:      GFS:2010-07-20_00*
*Looking for data at time 2010-07-20_03*
*ERROR: Data not found: 2010-07-20_03:00:00.0000*

-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From claudiomet at gmail.com  Sat Mar 19 14:26:53 2011
From: claudiomet at gmail.com (claudiomet)
Date: Sat, 19 Mar 2011 17:26:53 -0300
Subject: [Wrf-users] vertical levels interpolation
Message-ID: <AANLkTi=uHCJYZHzfTqqMqGHB9Jq+-YgQC194z6R0-TnO@mail.gmail.com>

Greetings !

I have an operational WRF running for 1x1 km and 27 vertical levels.
Now, I need to extract information each 10 vertical meters for the first
2000 meters above ground.
It's possible to made this with ARWpost or I need another tool for this?

Greetings !

-- 
Claudio Cortes
+56 (2) 2994121

Meteorologo
Laboratorio de Innovaci?n e Inform?tica Ambiental (LIIA)
Unidad de Modelacion y Gestion de la Calidad del Aire (UMGCA)
Centro Nacional del Medio Ambiente (CENMA)

--
Claudio Cortes
+56 (2) 2994121

Meteorologist
Laboratory of Innovation and Environmental Informatics
Modeling and Air Quality Management Unit
National Enviroment Center, Chile (CENMA)
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From eric.kemp at nasa.gov  Mon Mar 21 07:25:05 2011
From: eric.kemp at nasa.gov (Kemp, Eric M. (GSFC-610.3)[NORTHROP GRUMMAN INFORMATION TECH])
Date: Mon, 21 Mar 2011 08:25:05 -0500
Subject: [Wrf-users] Wrf-users Digest, Vol 79, Issue 19
In-Reply-To: <4D8200A2.1050103@uni-hohenheim.de>
Message-ID: <C9ACC9F1.1FDB%Eric.Kemp@nasa.gov>


I've also encountered this problem with gfortran 4.2.  It's worth noting
that declaring pointer arguments with the intent attribute is illegal in
Fortran 90, and is only recently permitted with Fortran 2003.  So perhaps
those intent statements should be removed in the official source code
distribution for better standard conformance.

-Eric


On 3/17/11 8:37 AM, "Thomas Schwitalla" <thomas.schwitalla at uni-hohenheim.de>
wrote:

> Dear Maria,
> 
> the problems are the "intent(in)" and "intent(out)" statements at line
> 2363/2364 of dyn_em/module_initialize_real.F . Try to delete the intent
> statements, it should help for gfortran 4.2.4. The other way would be to
> upgrade to gfortran 4.3.x which can handle these pointer declarations
> without problems.
> 
> Best regards,
> Thomas
> 
> Am 16.03.2011 20:53, schrieb wrf-users-request at ucar.edu:
>> Message: 3
>> Date: Tue, 15 Mar 2011 14:28:06 -0400
>> From: Maria Eugenia<maria.frediani at gmail.com>
>> Subject: [Wrf-users] problem installing wrf v3.2.1 with gcc v4.2.4
>> To: wrf-users at ucar.edu
>> Message-ID:
>> <AANLkTintxGBWArE5O6AjUs09wa4-jST6sq03LiC-F=AP at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>> 
>> Dear all,
>> 
>> I'm trying to install WRFV3.2.1 (dmpar, without support for grib2 io)
>> in a SGI Altix 3700 IA64 Itanium 2.
>> I'm using gcc/gfortran v 4.2.4, netcdf v4.1.1, mpich2 v1.3.2 and libpng
>> v1.2.12.
>> I have successfully built WRF V3.2, with the above configuration, but
>> the newest version does not compile completely.
>> 
>> After compiling for em_real, I only have wrf.exe in the WRFV3/main
>> directory, no real.exe nor any of the other executables that should be
>> there. I don't understand why wrf.exe compiles and real.exe
>> doesn't....
>> 
>> I also tried to compile it serial only, to exclude a possible problem
>> with mpich2, but the result is the same.
>> Maybe it is relevant to mention that ggc is not the default compiler,
>> the default is ifort 9.0. However I have checked the paths and
>> installed the required softwares with gcc (netcdf,mpich2,libpng).
>> Besides that, when I run ./configure, I only see options to use intel
>> compiler:
>>     1.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (serial)
>>     2.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (smpar)
>>     3.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (dmpar)
>>     4.  Linux SGI Altix, ifort compiler with icc 9.x,10.x  (dm+sm)
>> Therefore I created my configure.wrf file based on gcc. Anyway, I
>> don't believe this is the problem given that I successfully built v3.2
>> with the same configuration.
>> 
>> The configure.wrf file for the serial and dmpar build are attached as
>> well as the compile.log.
>> I sincerely appreciate your help.
>> 
>> Maria E. B. Frediani
>> -----------------------------------------------------------------------------
>> --------
>> Visiting Scholar
>> University of Connecticut
>> School of Engineering
>> 261 Glenbrook Rd
>> Storrs, CT 06269
>> frediani at engr.uconn.edu
>> -------------- next part --------------
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>> Name: configure.wrfv3.2.1_x86_64_gfortran_gcc_serial
>> Type: application/octet-stream
>> Size: 19317 bytes
>> Desc: not available
>> Url : 
>> http://mailman.ucar.edu/pipermail/wrf-users/attachments/20110315/fbbd2fa2/att
>> achment.obj
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Eric M. Kemp                   Northrop Grumman Corporation
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From edonnell at weatherzone.com.au  Mon Mar 21 22:55:22 2011
From: edonnell at weatherzone.com.au (Elisabeth Donnell)
Date: Tue, 22 Mar 2011 15:55:22 +1100 (EST)
Subject: [Wrf-users] How to get RH field from dew point using ungrib?
In-Reply-To: <1656872308.549.1300768902148.JavaMail.root@zimbra.theweather.com.au>
Message-ID: <139141404.560.1300769722711.JavaMail.root@zimbra.theweather.com.au>

Hello wrf-users, 

I am using CMC to drive WRF-NMM (V3.2). My input grib files contain dew point at 2m and dew point depression at other vertical levels (not RH). 

I think that WRF needs as input an RH field. I noticed there is some code in the ungrib (rrpr.F) that looks like it should do the conversion for me (see at end of email). 
My question is therefore ...is there something I should be doing to utilise this code, as at present when I run ungrib, RH does not appear in the intermediate file ? Should I set up my Vtable (and METGRID.TBL) differently? 

Any ideas much appreciated. 

This is the section of code I am referring to in in rrpr.F 
! If surface RH is missing, see if we can compute RH from Specific Humidity 
! or Dewpoint or Dewpoint depression: 
! 
if (.not. is_there (200100, 'RH')) then 
if (is_there(200100, 'TT').and. & 
is_there(200100, 'PSFC' ) .and. & 
is_there(200100, 'SPECHUMD')) then 
call get_dims(200100, 'TT') 
call compute_rh_spechumd(map%nx, map%ny) 
call mprintf(.true.,DEBUG, & 
"RRPR: SURFACE RH is computed") 
elseif (is_there(200100, 'TT' ).and. & 
is_there(200100, 'DEWPT')) then 
call get_dims(200100, 'TT') 
call compute_rh_dewpt(map%nx, map%ny) 
elseif (is_there(200100, 'TT').and. & 
is_there(200100, 'DEPR')) then 
call get_dims(200100, 'TT') 
call compute_rh_depr(map%nx, map%ny, 200100.) 
endif 
endif 

and the Vtable 
wrf at model11:/var/domains/AUS9_CMC/wpsprd$ more Vtable 
GRIB1| Level| From | To | metgrid | metgrid | metgrid | 
Param| Type |Level1|Level2| Name | Units | Description | 
-----+------+------+------+----------+---------+------------------------------------------+ 
11 | 100 | * | | TT | K | Temperature | 
33 | 100 | * | | UU | m s-1 | U | 
34 | 100 | * | | VV | m s-1 | V | 
7 | 100 | * | | HGT | m | Height | 
11 | 105 | 2 | | TT | K | Temperature at 2 m | 
17 | 105 | 2 | | DEWPT | K | Dew point temperature at 2 m | 
33 | 105 | 10 | | UU | m s-1 | U at 10 m | 
34 | 105 | 10 | | VV | m s-1 | V at 10 m | 
81 | 1 | 0 | | LANDSEA | proprtn | Land/Sea flag (1=land,0=sea) | 
2 | 102 | 0 | | PMSL | Pa | Sea-level Pressure | 
80 | 1 | 0 | | SST | K | Sea Surface Temperature | 
76 | 100 | * | | QC | kg kg-1 | Cloud water mixing ratio 
-----+------+------+------+----------+---------+------------------------------------------+ 


Cheers, 

Liz 


Dr. Elisabeth Donnell 

weatherzone? 
M 0425322032 
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From guitingsong at ntu.edu.sg  Tue Mar 22 02:51:30 2011
From: guitingsong at ntu.edu.sg (Song Guiting)
Date: Tue, 22 Mar 2011 16:51:30 +0800
Subject: [Wrf-users] wrf_user_intrp3d problem
Message-ID: <AANLkTinOk0bsxybae_atW=oHkf2tyXkJ-K9Yqro6m+bJ@mail.gmail.com>

Dear WRF users and NCL guys,

when I use wrf_user_intrp3d in NCL to make a vertical interpolation (in meter), I found the first interpolating level is always missing value. For example my model top is 30 km, then the first interpolating level is 300 meter, and it is always a missing value. As you can from the figure-Z_Vertical_CrossSection.000004.png, the white part in the surface represents the missing value which contaminates the true terrain height.

I will be very appreciated if anyone give me some suggestion.

I copy the script as follows.

Best regards,
Guiting






load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"
load "$NCARG_ROOT/lib/ncarg/nclscripts/wrf/WRFUserARW.ncl"
;load "./WRFUserARW.ncl"

begin
;
; The WRF ARW input file.
; This needs to have a ".nc" appended, so just do it.
  a = addfile("./wrfout.nc<http://wrfout.nc>","r")


; We generate plots, but what kind do we prefer?
  type = "x11"
; type = "pdf"
; type = "ps"
; type = "ncgm"
type = "png"
  wks = gsn_open_wks(type,"Z_Vertical_CrossSection")


; Set some basic resources
  res = True
  res at MainTitle = "REAL-TIME WRF"
  res at Footer = False

  pltres = True


;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

; What times and how many time steps are in the data set?
  FirstTime = True
  FirstTimeMap = True
  times  = wrf_user_list_times(a)  ; get times in the file
  ntimes = dimsizes(times)         ; number of times in the file

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

  xlat = wrf_user_getvar(a, "XLAT",0)
  xlon = wrf_user_getvar(a, "XLONG",0)
  ter = wrf_user_getvar(a, "HGT",0)

  do it = 0,ntimes-1,2             ; TIME LOOP

    print("Working on time: " + times(it) )
    res at TimeLabel = times(it)   ; Set Valid time to use on plots

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
; First get the variables we will need

    tc   = wrf_user_getvar(a,"tc",it)      ; T in C
    rh   = wrf_user_getvar(a,"rh",it)      ; relative humidity
    z    = wrf_user_getvar(a, "z",it)      ; grid point height

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

    do ip = 1, 3          ; we are doing 3 plots
            ; all with the pivot point (plane) in the center of the domain
            ; at angles 0, 45 and 90
 ;                   |
 ;                   |
 ;       angle=0 is  |, angle=90 is ------
 ;                   |
 ;                   |

  ;   Build plane (pivot point) through which the cross section will go
  ;   OR set to zero, if start and end points are specified
  ;   IF using plane and angle, set opts in wrf_user_intrp3d to False
        dimsrh = dimsizes(rh)
        plane = new(2,float)
        plane = (/ dimsrh(2)/2, dimsrh(1)/2 /)    ; pivot point is center of domain
        opts = False

        if(ip .eq. 1) then
          angle = 90.
          X_plane = wrf_user_intrp2d(xlon,plane,angle,opts)
          X_desc = "longitude"
        end if
        if(ip .eq. 2) then
          angle = 0.
          X_plane = wrf_user_intrp2d(xlat,plane,angle,opts)
          X_desc = "latitude"
        end if
        if(ip .eq. 3) then
          angle = 45.
          X_plane = wrf_user_intrp2d(xlon,plane,angle,opts)
          X_desc = "longitude"
        end if

         ; X-axis lables
         dimsX = dimsizes(X_plane)
         xmin = X_plane(0)
         xmax = X_plane(dimsX(0)-1)
         xspan = dimsX(0)-1
         nxlabs = floattoint( (xmax-xmin)/2 + 1)

       if (FirstTimeMap) then
         lat_plane = wrf_user_intrp2d(xlat,plane,angle,opts)
         lon_plane = wrf_user_intrp2d(xlon,plane,angle,opts)
         mpres = True
         mpres at mpGeophysicalLineColor      = "Black"
         mpres at mpNationalLineColor         = "Black"
         mpres at mpUSStateLineColor          = "Black"
         mpres at mpGridLineColor             = "Black"
         mpres at mpLimbLineColor             = "Black"
         mpres at mpPerimLineColor            = "Black"
         pltres = True
         pltres at FramePlot = False
         optsM = res
         optsM at NoHeaderFooter = True
         optsM at cnFillOn = True
         optsM at lbTitleOn = False
         contour  = wrf_contour(a,wks,ter,optsM)
         plot = wrf_map_overlays(a,wks,(/contour/),pltres,mpres)
         lnres = True
         lnres at gsLineThicknessF = 3.0
         lnres at gsLineColor = "black";"Red"
         do ii = 0,dimsX(0)-2
           gsn_polyline(wks,plot,(/lon_plane(ii),lon_plane(ii+1)/),(/lat_plane(ii),lat_plane(ii+1)/),lnres)
         end do
         frame(wks)
         delete(lon_plane)
         delete(lat_plane)
         pltres at FramePlot = True
      end if


       if (FirstTime) then
         ; THIS IS NEEDED FOR LABLES - ALWAYS DO (Z axis only needed once. X everytime plane changes)

         ; Y-axis labels
         zmax = 6000.     ;  We only want to see the first 6 km
         zz = wrf_user_intrp3d(z,z,"v",plane,angle,opts)
         dims = dimsizes(zz)
         do imax = 0,dims(0)-1
         if ( .not.ismissing(zz(imax,0)) .and. zz(imax,0) .lt. zmax ) then
           zmax_pos = imax
         end if
         end do
         zspan = zmax_pos
         zmin = z(0,0,0)
         zmax = zz(zmax_pos,0)
    print(zmax)
         zmin=zmin/1000.
         zmax=zmax/1000.
         nzlabs = floattoint(zmax + 1)

         FirstTime = False
         ; END OF ALWAYS DO
      end if

        ; Interpolate data vertically (in z)

        rh_plane = wrf_user_intrp3d(rh,z,"v",plane,angle,opts)
        tc_plane = wrf_user_intrp3d(tc,z,"v",plane,angle,opts)

  ; Options for XY Plots
        opts_xy                         = res
        opts_xy at tiXAxisString           = X_desc
        opts_xy at tiYAxisString           = "Height (km)"
        opts_xy at cnMissingValPerimOn     = True
        opts_xy at cnMissingValFillColor   = 0
        opts_xy at cnMissingValFillPattern = 11
        opts_xy at tmXTOn                  = False
        opts_xy at tmYROn                  = False
        opts_xy at tmXBMode                = "Explicit"
        opts_xy at tmXBValues              = fspan(0,xspan,nxlabs) ; Create the correct tick marks
        opts_xy at tmXBLabels              = sprintf("%.1f",fspan(xmin,xmax,nxlabs)); Create labels
        opts_xy at tmXBLabelFontHeightF    = 0.015
        opts_xy at tmYLMode                = "Explicit"
        opts_xy at tmYLValues              = fspan(0,zspan,nzlabs) ; Create the correct tick marks
        opts_xy at tmYLLabels              = sprintf("%.1f",fspan(zmin,zmax,nzlabs)); Create labels
        opts_xy at tiXAxisFontHeightF      = 0.020
        opts_xy at tiYAxisFontHeightF      = 0.020
        opts_xy at tmXBMajorLengthF        = 0.02
        opts_xy at tmYLMajorLengthF        = 0.02
        opts_xy at tmYLLabelFontHeightF    = 0.015
        opts_xy at PlotOrientation         = tc_plane at Orientation


  ; Plotting options for RH
        opts_rh = opts_xy
        opts_rh at ContourParameters       = (/ 10., 90., 10. /)
        opts_rh at pmLabelBarOrthogonalPosF = -0.1
        opts_rh at cnFillOn                = True
        opts_rh at cnFillColors            = (/"White","White","White", \
                                            "White","Chartreuse","Green", \
                                            "Green3","Green4", \
                                            "ForestGreen","PaleGreen4"/)

  ; Plotting options for Temperature
        opts_tc = opts_xy
        opts_tc at cnInfoLabelZone = 1
        opts_tc at cnInfoLabelSide = "Top"
        opts_tc at cnInfoLabelPerimOn = True
        opts_tc at cnInfoLabelOrthogonalPosF = -0.00005
        opts_tc at ContourParameters  = (/ 5. /)


  ; Get the contour info for the rh and temp
        contour_tc = wrf_contour(a,wks,tc_plane(0:zmax_pos,:),opts_tc)
        contour_rh = wrf_contour(a,wks,rh_plane(0:zmax_pos,:),opts_rh)


  ; MAKE PLOTS
        plot = wrf_overlays(a,wks,(/contour_rh,contour_tc/),pltres)

  ; Delete options and fields, so we don't have carry over
        delete(opts_xy)
        delete(opts_tc)
        delete(opts_rh)
        delete(tc_plane)
        delete(rh_plane)
        delete(X_plane)

    end do  ; make next cross section

;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

    FirstTimeMap = False
  end do        ; END OF TIME LOOP

end

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From davidstephenbryan at yahoo.com  Wed Mar 23 12:02:02 2011
From: davidstephenbryan at yahoo.com (David Bryan)
Date: Wed, 23 Mar 2011 11:02:02 -0700 (PDT)
Subject: [Wrf-users] limiting WRF output
Message-ID: <552372.45132.qm@web56205.mail.re3.yahoo.com>

I want to limit the output of WRF 3.2 ARW?to just a few parameters--wind speed 
and temperature--while keeping the rest of its operation as a default 
installation.? After reading the User's Guide, I thought that perhaps changing 
the Registry file was the way to address that.? However, after looking at the 
Registry files, all the parameters seemed to affect the internal operation of 
the model; I didn't find a part that was solely concerned with output.

Should I be focusing on the namelist.output instead?

Also, is there a way to limit the output file to a subset of gridpoints within a 
given domain?

Thanks!


      

From J.Kala at murdoch.edu.au  Thu Mar 24 20:29:24 2011
From: J.Kala at murdoch.edu.au (Jatin Kala)
Date: Fri, 25 Mar 2011 10:29:24 +0800
Subject: [Wrf-users] WRF is "hanging"
Message-ID: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au>

Dear WRF-users,

 

I have compiled WRF3.2 on our new supercomputing facility, and having
some trouble. Namely, WRF is just "hanging" at:

 

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
84045408 b

 ytes allocated

 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
3084672 b

 ytes allocated

 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
file. **

 *

 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

 

 

The job remains in the queue, i.e, does not error out until walltime is
elapsed.

 

I have compiled with -O0 but that did not help. I have also compiled
with the updated "gen_allocs.c" form the WRF website, but that has not
helped either. I did do a "clean -a" before.

 

I have compiled WRF with the follows libs:

 

intel-compilers/2011.1.107

jasper/1.900.1

ncarg/5.2.1

mpi/intel/openmpi/1.4.2-qlc

netcdf/4.0.1/intel-2011.1.107

export WRFIO_NCD_LARGE_FILE_SUPPORT=1

 

Any help would be greatly appreciated!

 

Kind regards,

 

Jatin 

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From johannes.keller at psi.ch  Thu Mar 24 00:48:00 2011
From: johannes.keller at psi.ch (Keller Johannes)
Date: Thu, 24 Mar 2011 07:48:00 +0100
Subject: [Wrf-users] limiting WRF output
In-Reply-To: <552372.45132.qm@web56205.mail.re3.yahoo.com>
References: <552372.45132.qm@web56205.mail.re3.yahoo.com>
Message-ID: <9A1F6C5E-C547-46FA-897B-F8881E8C30AE@psi.ch>

David,

save the original Registry file Registry.EM as a backup, then remove the "h* (stands for history) in the "IO" column of those state variables you don't want to be written to the wrfout_.... file(s).

Hannes

On Mar 23, 2011, at 7:02 PM, David Bryan wrote:

> I want to limit the output of WRF 3.2 ARW to just a few parameters--wind speed 
> and temperature--while keeping the rest of its operation as a default 
> installation.  After reading the User's Guide, I thought that perhaps changing 
> the Registry file was the way to address that.  However, after looking at the 
> Registry files, all the parameters seemed to affect the internal operation of 
> the model; I didn't find a part that was solely concerned with output.
> 
> Should I be focusing on the namelist.output instead?
> 
> Also, is there a way to limit the output file to a subset of gridpoints within a 
> given domain?
> 
> Thanks!
> 
> 
> 
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

 
---------------------------------------------------------------------
Dr.Johannes Keller 
Paul Scherrer Institut (PSI)
Laboratory of Atmospheric Chemistry (LAC) 
Building OFLA / 012
CH-5232 Villigen PSI, Switzerland
Phone: +41 56 310 20 65,  Fax: +41 56 310 45 25
e-mail: johannes.keller(at)psi.ch
http://www.psi.ch/ 
http://lac.web.psi.ch 
---------------------------------------------------------------------






From nilima.2002 at gmail.com  Thu Mar 24 01:26:35 2011
From: nilima.2002 at gmail.com (nilima natoo)
Date: Thu, 24 Mar 2011 08:26:35 +0100
Subject: [Wrf-users] wps compilation error
In-Reply-To: <AANLkTikzXG=KL8Q4daVwND7yGTPtT84+RUYp-rEo6ThH@mail.gmail.com>
References: <AANLkTimJzv813d+gQgEi=_3VeidZ0x3BM19UQB-daEOw@mail.gmail.com>
	<AANLkTikzXG=KL8Q4daVwND7yGTPtT84+RUYp-rEo6ThH@mail.gmail.com>
Message-ID: <AANLkTikqCC=qu22JotygL2eYwSWD2D+g6rhPzHB=ud3b@mail.gmail.com>

Hello wrf users,

I have successfully compiled the WRFV3 and now trying to do for WPS.
However there are some errors while compiling WPS. Please find attached the
log file and kindly let me know what corrections are necessary..
I am using 64 bit cluster machine, 4.0.1 version netcdf compiled with
gfortran. I successfully compiled WRFV3 with gfortran and was trying the
same for WPS.

many thanks and regards,
nma
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From tnquanghuy at gmail.com  Thu Mar 24 12:12:38 2011
From: tnquanghuy at gmail.com (Huy Tran)
Date: Thu, 24 Mar 2011 10:12:38 -0800
Subject: [Wrf-users] limiting WRF output
In-Reply-To: <552372.45132.qm@web56205.mail.re3.yahoo.com>
References: <552372.45132.qm@web56205.mail.re3.yahoo.com>
Message-ID: <4D8B8996.9090200@gmail.com>

Hi David,

Modifying the Registry file is right path. You can read more on WRF 
Registry from here: 
http://www.mmm.ucar.edu/wrf/users/tutorial/200807/WRF%20Registry%20and%20Examples.pdf

For each parameter there is I/O description, such as "i01rhusdf". Here 
the "h" indicates how that parameter will be written out in WRF history 
output file. The "h" maybe followed by integer numbers, for example 
"h01" which indicate that the parameter will be written both in 
principle output and in the first auxiliary files. So if you eliminate 
the "h" and any number follow it, that parameter will not be written out.

If you just want to limit to a very few number of parameters to be 
written out, the best way to do is make those parameters be written out 
in a auxiliary file (e.g auxiliary 1). Then in the namelist.input set 
the auxhist1_interval to the desired frequency, and change the 
history_interval to much larger value to make WRF write the principle 
outputs less frequently. Doing this way will only require modifications 
to the concerned parameters and not have to pay attention to tons of 
other parameters in the Registry.

As far as I know there is no way to limit the output file to a subset of 
gridpoints of a domain.

Help this can help.

Huy

On 3/23/2011 10:02 AM, David Bryan wrote:
> I want to limit the output of WRF 3.2 ARW to just a few parameters--wind speed
> and temperature--while keeping the rest of its operation as a default
> installation.  After reading the User's Guide, I thought that perhaps changing
> the Registry file was the way to address that.  However, after looking at the
> Registry files, all the parameters seemed to affect the internal operation of
> the model; I didn't find a part that was solely concerned with output.
>
> Should I be focusing on the namelist.output instead?
>
> Also, is there a way to limit the output file to a subset of gridpoints within a
> given domain?
>
> Thanks!
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>


From bllamptey at gmail.com  Fri Mar 25 16:07:12 2011
From: bllamptey at gmail.com (Benjamin Lamptey)
Date: Fri, 25 Mar 2011 22:07:12 +0000
Subject: [Wrf-users] WRF Physics Schemes
Message-ID: <AANLkTi=4CE6XV+C+52zpz8gYYkjnT6+ZpUYEO9O6Vrbe@mail.gmail.com>

Hello,
I am preparing some notes on the WRF Physics schemes. I wish to have
information that
will ensure the appropriate use of the schemes. I am using the schemes in
v3.2.1.
I should be grateful if you could address the following questions/issues
about any of the schemes for me. I am willing to make the information
available after the compilation.

Thanks
Ben

WRF Physics Schemes (WRFV3.2.1)
The objective of this  is for the following issues to be answered for each
scheme;
1. What was the objective for with which the scheme was developed?
2. What temporal scale was it developed for?
3. What kind of weather phenomena was it developed for?
4. What spatial scale or resolution was it developed for?
5. Any other information to ensure appropriate use of the schemes
6. Include appropriate references

14.1 Microphysics Schemes
14.1.1 Kessler
14.1.2 Lin et al.
14.1.3 WRF Single Moment 3 (WSM3)
14.1.4 WRF Single Moment 5 (WSM5)
14.1.5 Ferrier (new Eta)
14.1.6 WRF Single Moment 6 (WSM6)
14.1.7 Goddard GCE
14.1.8 Thompson
14.1.9 Milbrandt-Yau
14.1.10 Morrison (2 moments)
14.1.11 WDM 5-class
14.1.12 WDM 6-class
14.1.13 Thompson scheme (version from V3.0)

14.2 Convective Schemes
14.2.1 Kain-Fritsch (new Eta)
14.2.2 Betts-Miller-Janjic
14.2.3 Grell-Devenyi ensemble scheme
14.2.4 Simpli?ed Arakawa-Schubert (NMM only)
14.2.5 Grell 3D ensemble scheme
14.2.6 previous Kain-Fritsch

14.3 Boundary Layer Schemes
14.3.1 YSU scheme
14.3.2 Mellor-Yamada-Janjic TKE scheme
14.3.3 NCEP Global Forecast System scheme (NMM only)
14.3.4 Quasi-Normal Scale Elimination PBL
14.3.5 MYNN 2.5 level TKE scheme, works with sf sfclay physics=1 or 2 as
well as 5
14.3.6 MYNN 3rd level TKE scheme, works only MYNNSFC (sf sfclay physics = 5)

14.3.7 ACM2 (Pleim) PBL (ARW)
14.3.8 Bougeault and Lacarrere (BouLac) PBL
14.3.9 MRF scheme

-- 
Benjamin Lamptey, PhD
Senior Lecturer
Nautical Science Department
Regional Maritime University
P.O. Box GP 1115, Accra Ghana

and

Scientist (Meteorologist and Geoscientist)
West African Science Service Centre for Climate and Adapted Land Use
c/o AGRA at CSIR Office Complex
PMB KIA 114, Airport-Accra, Ghana
FAX: +233 030 2 768602

Cell: +233(0)273135062
bllamptey at gmail.com
http://www.rap.ucar.edu/~lamptey
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From FLiu at azmag.gov  Fri Mar 25 19:04:28 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Sat, 26 Mar 2011 01:04:28 +0000
Subject: [Wrf-users] WRF is "hanging"
In-Reply-To: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au>
References: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C25478A31@mag9006>

Hi Jatin,
I do not know exactly what is wrong for your case, but one thing you can try is to reduce time_step in namelist.input by 3 times. Good luck.
Feng

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jatin Kala
Sent: Thursday, March 24, 2011 7:29 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF is "hanging"

Dear WRF-users,

I have compiled WRF3.2 on our new supercomputing facility, and having some trouble. Namely, WRF is just "hanging" at:

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,     84045408 b
 ytes allocated
 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,      3084672 b
 ytes allocated
 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input file. **
 *
 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input


The job remains in the queue, i.e, does not error out until walltime is elapsed.

I have compiled with -O0 but that did not help. I have also compiled with the updated "gen_allocs.c" form the WRF website, but that has not helped either. I did do a "clean -a" before.

I have compiled WRF with the follows libs:

intel-compilers/2011.1.107
jasper/1.900.1
ncarg/5.2.1
mpi/intel/openmpi/1.4.2-qlc
netcdf/4.0.1/intel-2011.1.107
export WRFIO_NCD_LARGE_FILE_SUPPORT=1

Any help would be greatly appreciated!

Kind regards,

Jatin
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From J.Kala at murdoch.edu.au  Sat Mar 26 01:19:03 2011
From: J.Kala at murdoch.edu.au (Jatin Kala)
Date: Sat, 26 Mar 2011 15:19:03 +0800
Subject: [Wrf-users] WRF is "hanging"
In-Reply-To: <9BDE2A7F9712AF45A0C08451B3CD8E5C25478A31@mag9006>
References: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C25478A31@mag9006>
Message-ID: <BB91CFD22006F54687E86A28D1AAC62C061B8AE7@PLUTO.ad.murdoch.edu.au>

Thanks for the suggestion Feng, but this is not related to namelist
inputs. The namelist I am running worked fine on  a different machine.

The issue here is that WRF simply hangs and does nothing at
initialisation of Grid 2. Ie, the rsl.out and rsl.error files print out:

 

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
84045408 b

 ytes allocated

 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
3084672 b

 ytes allocated

 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
file. **

 *

 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

 

and that's it. The rsl.error and rsl.out files do not keep growing in
size, there are no more prints, they just stop printing stuff. The job
however is still in the queue and does NOT error out, until the walltime
is elapsed. No wrfout_d0* files are created. 

 

Other people seem to have had this issue before:

 

http://mailman.ucar.edu/pipermail/wrf-users/2010/001749.html 

 

http://mailman.ucar.edu/pipermail/wrf-users/2010/001747.html 

 

 

Any help more than welcome.

 

Regards,

 

Jatin 

 

 

 

From: Feng Liu [mailto:FLiu at azmag.gov] 
Sent: Saturday, 26 March 2011 9:04 AM
To: Jatin Kala; wrf-users at ucar.edu
Subject: RE: WRF is "hanging"

 

Hi Jatin,

I do not know exactly what is wrong for your case, but one thing you can
try is to reduce time_step in namelist.input by 3 times. Good luck.

Feng

 

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Jatin Kala
Sent: Thursday, March 24, 2011 7:29 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF is "hanging"

 

Dear WRF-users,

 

I have compiled WRF3.2 on our new supercomputing facility, and having
some trouble. Namely, WRF is just "hanging" at:

 

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
84045408 b

 ytes allocated

 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
3084672 b

 ytes allocated

 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
file. **

 *

 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

 

 

The job remains in the queue, i.e, does not error out until walltime is
elapsed.

 

I have compiled with -O0 but that did not help. I have also compiled
with the updated "gen_allocs.c" form the WRF website, but that has not
helped either. I did do a "clean -a" before.

 

I have compiled WRF with the follows libs:

 

intel-compilers/2011.1.107

jasper/1.900.1

ncarg/5.2.1

mpi/intel/openmpi/1.4.2-qlc

netcdf/4.0.1/intel-2011.1.107

export WRFIO_NCD_LARGE_FILE_SUPPORT=1

 

Any help would be greatly appreciated!

 

Kind regards,

 

Jatin 

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From Don.Morton at alaska.edu  Mon Mar 28 12:55:27 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Mon, 28 Mar 2011 10:55:27 -0800
Subject: [Wrf-users] WRF is "hanging"
In-Reply-To: <BB91CFD22006F54687E86A28D1AAC62C061B8AE7@PLUTO.ad.murdoch.edu.au>
References: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C25478A31@mag9006>
	<BB91CFD22006F54687E86A28D1AAC62C061B8AE7@PLUTO.ad.murdoch.edu.au>
Message-ID: <AANLkTi=xsnK1Bo4koa8BxQb_=REf_uh6OuAr8W4Ywoys@mail.gmail.com>

I have run into these kinds of issues a number of times.  In one case, it
was buggy implementation of MPI, in the scatterv() call, and switching to
openmpi fixed the problem.  In other cases, there were simply bad nodes on
the machine.  My own theory (may be completely wrong) is that these things
hangs very frequently occur while the master task is scattering stuff to all
the slaves.  This is seems to be a good operation for stressing MPI and/or
node communications.   I have found that these kinds of problems are often
(but not always) intermittent, and sometimes reducing the number of tasks
will get it running (presumably because you're not stressing the underlying
software and hardware infrastructure.

To date, I've never found these to be "WRF" problems.

Good luck!

Don

On Fri, Mar 25, 2011 at 11:19 PM, Jatin Kala <J.Kala at murdoch.edu.au> wrote:

>  Thanks for the suggestion Feng, but this is not related to namelist
> inputs. The namelist I am running worked fine on  a different machine.
>
> The issue here is that WRF simply hangs and does nothing at initialisation
> of Grid 2. Ie, the rsl.out and rsl.error files print out:
>
>
>
> d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
> 84045408 b
>
>  ytes allocated
>
>  d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
> 3084672 b
>
>  ytes allocated
>
>  d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
> file. **
>
>  *
>
>  d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input
>
>
>
> and that?s it. The rsl.error and rsl.out files do not keep growing in size,
> there are no more prints, they just stop printing stuff. The job however is
> still in the queue and does NOT error out, until the walltime is elapsed. No
> wrfout_d0* files are created.
>
>
>
> Other people seem to have had this issue before:
>
>
>
> http://mailman.ucar.edu/pipermail/wrf-users/2010/001749.html
>
>
>
> http://mailman.ucar.edu/pipermail/wrf-users/2010/001747.html
>
>
>
>
>
> Any help more than welcome.
>
>
>
> Regards,
>
>
>
> Jatin
>
>
>
>
>
>
>
> *From:* Feng Liu [mailto:FLiu at azmag.gov]
> *Sent:* Saturday, 26 March 2011 9:04 AM
> *To:* Jatin Kala; wrf-users at ucar.edu
> *Subject:* RE: WRF is "hanging"
>
>
>
> Hi Jatin,
>
> I do not know exactly what is wrong for your case, but one thing you can
> try is to reduce time_step in namelist.input by 3 times. Good luck.
>
> Feng
>
>
>
>
>
> *From:* wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] *On
> Behalf Of *Jatin Kala
> *Sent:* Thursday, March 24, 2011 7:29 PM
> *To:* wrf-users at ucar.edu
> *Subject:* [Wrf-users] WRF is "hanging"
>
>
>
> Dear WRF-users,
>
>
>
> I have compiled WRF3.2 on our new supercomputing facility, and having some
> trouble. Namely, WRF is just ?hanging? at:
>
>
>
> d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
> 84045408 b
>
>  ytes allocated
>
>  d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
> 3084672 b
>
>  ytes allocated
>
>  d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
> file. **
>
>  *
>
>  d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input
>
>
>
>
>
> The job remains in the queue, i.e, does not error out until walltime is
> elapsed.
>
>
>
> I have compiled with ?O0 but that did not help. I have also compiled with
> the updated ?gen_allocs.c? form the WRF website, but that has not helped
> either. I did do a ?clean ?a? before.
>
>
>
> I have compiled WRF with the follows libs:
>
>
>
> intel-compilers/2011.1.107
>
> jasper/1.900.1
>
> ncarg/5.2.1
>
> mpi/intel/openmpi/1.4.2-qlc
>
> netcdf/4.0.1/intel-2011.1.107
>
> export WRFIO_NCD_LARGE_FILE_SUPPORT=1
>
>
>
> Any help would be greatly appreciated!
>
>
>
> Kind regards,
>
>
>
> Jatin
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://www.arsc.edu/~morton/
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From kotroni at meteo.noa.gr  Mon Mar 28 13:07:07 2011
From: kotroni at meteo.noa.gr (Vassiliki Kotroni)
Date: Mon, 28 Mar 2011 22:07:07 +0300
Subject: [Wrf-users] WRF is "hanging"
In-Reply-To: <AANLkTi=xsnK1Bo4koa8BxQb_=REf_uh6OuAr8W4Ywoys@mail.gmail.com>
References: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au>	<9BDE2A7F9712AF45A0C08451B3CD8E5C25478A31@mag9006>	<BB91CFD22006F54687E86A28D1AAC62C061B8AE7@PLUTO.ad.murdoch.edu.au>
	<AANLkTi=xsnK1Bo4koa8BxQb_=REf_uh6OuAr8W4Ywoys@mail.gmail.com>
Message-ID: <001f01cbed7b$56674580$0335d080$@noa.gr>

Dear all

we recently had the same problem.

We had compiled mpi and wrf with the latest available version of intel

and when trying to run the model was hanging.

We found out that the problem was that we has only installed 64-bit intel

(as our system is 64-bit, an amd-phaenom) but indeed

installation of 32-bit on the same system was also needed.

Once we installed the 32-bit

without any recompilation the model was running OK.

Bizar but that is what happened to us.

 

best

Vasso

 

----------------------------------------------------------------------------
--------

Dr. Vassiliki KOTRONI

Institute of Environmental Research

National Observatory of Athens

Lofos Koufou, P. Pendeli, GR-15236

Athens, Greece

Tel: +30 2 10  8109126

Fax: +30 2 10 8103236

Daily weather forecasts at:

 <http://www.noa.gr/forecast> www.noa.gr/forecast (in english)

 <http://www.meteo.gr> www.meteo.gr       (in greek)

 <http://www.eurometeo.gr> www.eurometeo.gr

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Don Morton
Sent: 28 March 2011 21:55
To: Jatin Kala
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] WRF is "hanging"

 

I have run into these kinds of issues a number of times.  In one case, it
was buggy implementation of MPI, in the scatterv() call, and switching to
openmpi fixed the problem.  In other cases, there were simply bad nodes on
the machine.  My own theory (may be completely wrong) is that these things
hangs very frequently occur while the master task is scattering stuff to all
the slaves.  This is seems to be a good operation for stressing MPI and/or
node communications.   I have found that these kinds of problems are often
(but not always) intermittent, and sometimes reducing the number of tasks
will get it running (presumably because you're not stressing the underlying
software and hardware infrastructure.

 

To date, I've never found these to be "WRF" problems.

 

Good luck!

 

Don

On Fri, Mar 25, 2011 at 11:19 PM, Jatin Kala <J.Kala at murdoch.edu.au> wrote:

Thanks for the suggestion Feng, but this is not related to namelist inputs.
The namelist I am running worked fine on  a different machine.

The issue here is that WRF simply hangs and does nothing at initialisation
of Grid 2. Ie, the rsl.out and rsl.error files print out:

 

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
84045408 b

 ytes allocated

 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
3084672 b

 ytes allocated

 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
file. **

 *

 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

 

and that's it. The rsl.error and rsl.out files do not keep growing in size,
there are no more prints, they just stop printing stuff. The job however is
still in the queue and does NOT error out, until the walltime is elapsed. No
wrfout_d0* files are created. 

 

Other people seem to have had this issue before:

 

http://mailman.ucar.edu/pipermail/wrf-users/2010/001749.html 

 

http://mailman.ucar.edu/pipermail/wrf-users/2010/001747.html 

 

 

Any help more than welcome.

 

Regards,

 

Jatin 

 

 

 

From: Feng Liu [mailto:FLiu at azmag.gov] 
Sent: Saturday, 26 March 2011 9:04 AM
To: Jatin Kala; wrf-users at ucar.edu
Subject: RE: WRF is "hanging"

 

Hi Jatin,

I do not know exactly what is wrong for your case, but one thing you can try
is to reduce time_step in namelist.input by 3 times. Good luck.

Feng

 

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Jatin Kala
Sent: Thursday, March 24, 2011 7:29 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF is "hanging"

 

Dear WRF-users,

 

I have compiled WRF3.2 on our new supercomputing facility, and having some
trouble. Namely, WRF is just "hanging" at:

 

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
84045408 b

 ytes allocated

 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
3084672 b

 ytes allocated

 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
file. **

 *

 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

 

 

The job remains in the queue, i.e, does not error out until walltime is
elapsed.

 

I have compiled with -O0 but that did not help. I have also compiled with
the updated "gen_allocs.c" form the WRF website, but that has not helped
either. I did do a "clean -a" before.

 

I have compiled WRF with the follows libs:

 

intel-compilers/2011.1.107

jasper/1.900.1

ncarg/5.2.1

mpi/intel/openmpi/1.4.2-qlc

netcdf/4.0.1/intel-2011.1.107

export WRFIO_NCD_LARGE_FILE_SUPPORT=1

 

Any help would be greatly appreciated!

 

Kind regards,

 

Jatin 


_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu
http://mailman.ucar.edu/mailman/listinfo/wrf-users




-- 

Voice:  907 450 8679

Arctic Region Supercomputing Center
http://weather.arsc.edu/

http://www.arsc.edu/~morton/

 

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From Amy.Maples at noblis.org  Tue Mar 29 08:51:05 2011
From: Amy.Maples at noblis.org (Maples, Amy C.)
Date: Tue, 29 Mar 2011 14:51:05 +0000
Subject: [Wrf-users] CCSM data into WPS
Message-ID: <732F5334E2229D4A9F0D8B22293489C10F532822@mbx1.mitretek.org>

WRF users,

We are attempting to run CCSM data through WRF using a domain of the continental US.  We've set up a preprocessing script to turn our netcdf data files into appropriately formatted grib files.  When we run NNRP data in netcdf through this script followed by WPS and WRF, the output appears fine.  However, the CCSM data, after being run through the exact same script, has extremely strange precipitation patterns when it comes out of WRF (at the moment, precipitation only over bodies of water).

We believe the main issues lies with the pressures.  Both input sets of grib files are set up on pressures levels and include variables for PMSL and PSFC (all in Pa).  When we run the NNRP data through WPS, the output PSFC and PMSL values look like the input grib data.  However, when we run the CCSM values through WPS, the output PSFC and PMSL have identical values which are over an unreasonably small range.

The two data sets are run through WPS using the same Vtable and without any changes to METGRID.TBL.   The only changes to namelist.wps are in the date fields.  The only real difference between the datasets, once in grib format, is that the CCSM data has missing values.  The CCSM data is interpolated from sigma levels and so has missing values below the surface of the earth, however we could extrapolate below the surface to eliminate the missing values.  But the NNRP data does not have missing values.  We have tried setting the missing_value parameters in METGRID.TBL to be the same as the grib files, but this doesn't change the WRF output.

Does anyone know what could be causing the difference in PSFC and PMSL?  Or other possible causes of the precipitation patterns?

Thanks,

Amy Maples
Center For Sustainability
Noblis, Inc.
Falls Church, VA
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From bbrashers at Environcorp.com  Wed Mar 30 09:50:46 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Wed, 30 Mar 2011 08:50:46 -0700
Subject: [Wrf-users] Alternative to RT_fdda_reformat_obsnud.pl?
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF3085206C6D606@irvine01.irvine.environ.local>

Hi all,

Does anyone have an alternative to RT_fdda_reformat_obsnud.pl?  

I'm running WRF in 5.5 day chunks, with about ~50 MB/hour of OBS in
LITTLE_R format.  Because the amount of data is so large, this perl
script takes a really long time to run -- about 4 days per 5.5-day init
(running on a compute node with 4 GB of RAM: I/O over NFS, and clearly
swapping).  That's longer than I expect my WRF run to take.

Has anyone re-written this program in FORTRAN or another compiled
language that might be more efficient?

Bart



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.

From ebouzeid at princeton.edu  Wed Mar 30 10:58:46 2011
From: ebouzeid at princeton.edu (Elie Bou-Zeid)
Date: Wed, 30 Mar 2011 12:58:46 -0400
Subject: [Wrf-users] postdoc or more senior position available in Princeton
	University
Message-ID: <4D936146.3040402@princeton.edu>

_*Postdoctoral Research Associate in Urban Hydrometeorology*_
A postdoctoral or more senior researcher position(s) in 
hydrometeorological modeling is available in the Department of Civil and 
Environmental Engineering at Princeton University. The prospective 
researcher will perform multi-scale atmospheric modeling to investigate 
the effects of urbanization and other anthropogenic forcings on the 
water cycle in China.

The work will use the Weather Research and Forecasting model for 
mesoscale and large-eddy simulations, focusing on droughts, floods, and 
land-atmospheric exchanges of relevance to the hydrological cycle. The 
research will be supervised by Professors Jim Smith 
(http://hydrometeorology.princeton.edu/) and Elie Bou-Zeid 
(http://efm.princeton.edu/).

Applicants from all academic backgrounds will be considered, but 
previous experience in atmospheric modeling and/or computational fluid 
dynamics is strongly desired. A PhD is required.  Interested candidates 
are encouraged to apply as soon as possible; the position will remain 
open until filled. All applications should be submitted through the 
Princeton University jobs site http://jobs.princeton.edu position number 
0110134.   Please include a CV, a brief statement of research experience 
and interests, and the names and emails of three references.  This 
appointment is for one year, and may be renewed pending satisfactory 
performance and sufficient funding.

Princeton University is an equal opportunity employer and complies with 
applicable EEO and affirmative action regulations.

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From FLiu at azmag.gov  Mon Mar 28 16:00:47 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Mon, 28 Mar 2011 22:00:47 +0000
Subject: [Wrf-users] WRF is "hanging"
In-Reply-To: <BB91CFD22006F54687E86A28D1AAC62C061B8AE7@PLUTO.ad.murdoch.edu.au>
References: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C25478A31@mag9006>
	<BB91CFD22006F54687E86A28D1AAC62C061B8AE7@PLUTO.ad.murdoch.edu.au>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C2547A0CF@mag9006>

Jatin and Don,
If the problem can not resolved by reducing time_step, I suspect and would say that it is highly resulted from your system. I experienced the similar issue before and took a lot of time to research what happened to system. We also asked wrfhelp for the solution but in vain, please see replies from wrfhelp immediate after my reply. We have a cluster to run different models such as WRF, WRF/Chem, CMAQ, CAMx, etc. our cluster equipped with 8 nodes each of which is dual quad-core, originally had a 100M switch and all models including WRF3.2.1 ran perfectly. In order to improve computing efficiency we upgraded the switch to 1 Gb and the CMAQ, CAMx models still run fine, however, WRF 3.2.1 model hang up more often with increasing the number of processor involved in the computing. But it seemed fairly random. When it hang up, no error message, no stop. We checked MPI libraries, MPICH, compiler flags..., many things. So we now leave it back to and on the 100 M switch. Everything works well and no hang up happens to WRF model any more though cluster slows down.  Why did CMAQ (parallel version) ran successfully with the 1 Gb switch and full nodes, but WRF 3.2.1 did not? Before we re-order another 1 Gb or more advanced switch and test it the question is still opened.
For effective test, you may use a pilot program test.f attached.  If your WRF hangs up, it should hang up too, but it lets you get quick check.
I hope it is helpful. I will keep a close eye on this issue.
Thanks.
Feng

--------------------------------------------
Wrfhelp repliy:


Since we have not had report from other users, I am guessing the problem has to do with your system than with the code. If you can get help from your system support or the vendor, that might be helpful.

wrfhelp



On Jan 21, 2011, at 9:41 AM, Feng Liu wrote:



> Hi,

> I re-compiled WRF3.2.1. The "hung up" problem sometimes still happens,

> sometimes does not, it seems fairly random. It hangs more often with

> increasing processor number. I also consulted with our IT staff but no

> solution so far. Your support is highly appreciated.

> Feng

>

>

> -----Original Message-----

> From: wrfhelp [mailto:wrfhelp at ucar.edu]<mailto:[mailto:wrfhelp at ucar.edu]>

> Sent: Thursday, January 06, 2011 4:38 PM

> To: Feng Liu

> Subject: Re: job hang up without error message when I used

>

> Could you work with your system support people and see if they can

> help?

> wrfhelp

>

> On Jan 5, 2011, at 8:15 PM, Feng Liu wrote:

>

>> Hi,

>> I had the hang up problem with version 3.2 no matter multiple

>> processors or single one used but when I modified namelist.input, it

>> did work. For version 3.2.1 I think the course of this problem is

>> different because it does work with master nodes.

>> On stability of computer you mentioned, you may be right. We updated

>> network work card from 100M switch to 1 G. We had stable WRF running

>> with old network card even though its performance was poor. However,

>> I can run CMAQ4.7.1 with 64 processors ( we have 8 nodes each of

>> which has 8 processors) successfully, and speedup factor is almost

>> 2.8 comparing against the system with old network card.

>> Thanks.

>> Feng

>>

>>

>> -----Original Message-----

>> From: wrfhelp [mailto:wrfhelp at ucar.edu]<mailto:[mailto:wrfhelp at ucar.edu]>

>> Sent: Wednesday, January 05, 2011 7:24 PM

>> To: Feng Liu

>> Subject: Re: job hang up without error message when I used

>>

>> Have you seen this problem with other versions of the model code

>> before? Is your system stable?

>> Can you run other MPI jobs steadily on this system? What I am saying

>> is that it is possible that it is problem with the computer, not the

>> model code.

>>

>> wrfhelp

>>

>> On Jan 5, 2011, at 5:11 PM, Feng Liu wrote:

>>

>>> Hi,

>>> Thanks for your response. But I am using WRF3.2.1 which has the same

>>> problem. I have no idea so far.

>>> Thanks.

>>> Feng

>>>

>>>

>>> -----Original Message-----

>>> From: wrfhelp [mailto:wrfhelp at ucar.edu]<mailto:[mailto:wrfhelp at ucar.edu]>

>>> Sent: Wednesday, January 05, 2011 4:20 PM

>>> To: Feng Liu

>>> Subject: Re: job hang up without error message when I used

>>>

>>> Mike was using 3.2 at the time, and the fix has been included in

>>> 3.2.1.

>>>

>>> wrfhelp

>>>

>>> On Jan 5, 2011, at 1:30 PM, Feng Liu wrote:

>>>

>>>> Hi,

>>>> I can run WRF3.2.1 successfully if I only use master node with 8

>>>> processors. However, my jobs (with MPI) hand up when I was using

>>>> more 16 processors or more than two nodes, no error message, no

>>>> crashes. This problem was described by Michael Zulauf as below:

>>>> (see http://mailman.ucar.edu/pipermail/wrf-users/2010/001745.html

>>>>

>>>> "My jobs sporadically (but usually eventually) hang up, most often

>>>> after a new wrfout file is opened.  No error messages, no crashes

>>>> - the processes continue, but _all_ output stops.  I eventually

>>>> just have to kill the job.  The wrfouts are small, and all output

>>>> looks good up until the failed wrfout."

>>>>

>>>> Mike mentioned he got a modified code from wrfhelp and seemed to

>>>> fix this issue. I also need to know which code need to be modified

>>>> and what is the problem related to? Thanks for support on fixing

>>>> this problem.

>>>> Feng

>>>>

>>>

>>> wrfhelp

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jatin Kala
Sent: Saturday, March 26, 2011 12:19 AM
To: wrf-users at ucar.edu
Subject: Re: [Wrf-users] WRF is "hanging"

Thanks for the suggestion Feng, but this is not related to namelist inputs. The namelist I am running worked fine on  a different machine.
The issue here is that WRF simply hangs and does nothing at initialisation of Grid 2. Ie, the rsl.out and rsl.error files print out:

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,     84045408 b
 ytes allocated
 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,      3084672 b
 ytes allocated
 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input file. **
 *
 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

and that's it. The rsl.error and rsl.out files do not keep growing in size, there are no more prints, they just stop printing stuff. The job however is still in the queue and does NOT error out, until the walltime is elapsed. No wrfout_d0* files are created.

Other people seem to have had this issue before:

http://mailman.ucar.edu/pipermail/wrf-users/2010/001749.html

http://mailman.ucar.edu/pipermail/wrf-users/2010/001747.html


Any help more than welcome.

Regards,

Jatin



From: Feng Liu [mailto:FLiu at azmag.gov]
Sent: Saturday, 26 March 2011 9:04 AM
To: Jatin Kala; wrf-users at ucar.edu
Subject: RE: WRF is "hanging"

Hi Jatin,
I do not know exactly what is wrong for your case, but one thing you can try is to reduce time_step in namelist.input by 3 times. Good luck.
Feng


From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jatin Kala
Sent: Thursday, March 24, 2011 7:29 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF is "hanging"

Dear WRF-users,

I have compiled WRF3.2 on our new supercomputing facility, and having some trouble. Namely, WRF is just "hanging" at:

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,     84045408 b
 ytes allocated
 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,      3084672 b
 ytes allocated
 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input file. **
 *
 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input


The job remains in the queue, i.e, does not error out until walltime is elapsed.

I have compiled with -O0 but that did not help. I have also compiled with the updated "gen_allocs.c" form the WRF website, but that has not helped either. I did do a "clean -a" before.

I have compiled WRF with the follows libs:

intel-compilers/2011.1.107
jasper/1.900.1
ncarg/5.2.1
mpi/intel/openmpi/1.4.2-qlc
netcdf/4.0.1/intel-2011.1.107
export WRFIO_NCD_LARGE_FILE_SUPPORT=1

Any help would be greatly appreciated!

Kind regards,

Jatin
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From J.Kala at murdoch.edu.au  Wed Mar 30 19:58:19 2011
From: J.Kala at murdoch.edu.au (Jatin Kala)
Date: Thu, 31 Mar 2011 09:58:19 +0800
Subject: [Wrf-users] WRF is "hanging"
In-Reply-To: <9BDE2A7F9712AF45A0C08451B3CD8E5C2547A0CF@mag9006>
References: <BB91CFD22006F54687E86A28D1AAC62C061B8A8A@PLUTO.ad.murdoch.edu.au><9BDE2A7F9712AF45A0C08451B3CD8E5C25478A31@mag9006>
	<BB91CFD22006F54687E86A28D1AAC62C061B8AE7@PLUTO.ad.murdoch.edu.au>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C2547A0CF@mag9006>
Message-ID: <BB91CFD22006F54687E86A28D1AAC62C061B8CD8@PLUTO.ad.murdoch.edu.au>

 

Hi all,

 

Thanks for all the replies.

 

It turns out that there was something "funny" with our openmpi library.
Our system admins have partly fixed the issue, so, now WRF only hangs on
certain numbers of CPUs per node. (Don't know why yet!).  They are still
working on it.

 

Cheers,

Jatin 

 

 

 

 

From: Feng Liu [mailto:FLiu at azmag.gov] 
Sent: Tuesday, 29 March 2011 6:01 AM
To: Jatin Kala; wrf-users at ucar.edu
Cc: Jatin Kala
Subject: RE: WRF is "hanging"

 

Jatin and Don, 

If the problem can not resolved by reducing time_step, I suspect and
would say that it is highly resulted from your system. I experienced the
similar issue before and took a lot of time to research what happened to
system. We also asked wrfhelp for the solution but in vain, please see
replies from wrfhelp immediate after my reply. We have a cluster to run
different models such as WRF, WRF/Chem, CMAQ, CAMx, etc. our cluster
equipped with 8 nodes each of which is dual quad-core, originally had a
100M switch and all models including WRF3.2.1 ran perfectly. In order to
improve computing efficiency we upgraded the switch to 1 Gb and the
CMAQ, CAMx models still run fine, however, WRF 3.2.1 model hang up more
often with increasing the number of processor involved in the computing.
But it seemed fairly random. When it hang up, no error message, no stop.
We checked MPI libraries, MPICH, compiler flags..., many things. So we
now leave it back to and on the 100 M switch. Everything works well and
no hang up happens to WRF model any more though cluster slows down.  Why
did CMAQ (parallel version) ran successfully with the 1 Gb switch and
full nodes, but WRF 3.2.1 did not? Before we re-order another 1 Gb or
more advanced switch and test it the question is still opened.    

For effective test, you may use a pilot program test.f attached.  If
your WRF hangs up, it should hang up too, but it lets you get quick
check. 

I hope it is helpful. I will keep a close eye on this issue. 

Thanks.

Feng

 

--------------------------------------------

Wrfhelp repliy:

 

 

Since we have not had report from other users, I am guessing the problem
has to do with your system than with the code. If you can get help from
your system support or the vendor, that might be helpful.

wrfhelp

 

On Jan 21, 2011, at 9:41 AM, Feng Liu wrote:

 

> Hi,

> I re-compiled WRF3.2.1. The "hung up" problem sometimes still happens,


> sometimes does not, it seems fairly random. It hangs more often with 

> increasing processor number. I also consulted with our IT staff but no


> solution so far. Your support is highly appreciated.

> Feng

> 

> 

> -----Original Message-----

> From: wrfhelp [mailto:wrfhelp at ucar.edu]

> Sent: Thursday, January 06, 2011 4:38 PM

> To: Feng Liu

> Subject: Re: job hang up without error message when I used

> 

> Could you work with your system support people and see if they can 

> help?

> wrfhelp

> 

> On Jan 5, 2011, at 8:15 PM, Feng Liu wrote:

> 

>> Hi,

>> I had the hang up problem with version 3.2 no matter multiple 

>> processors or single one used but when I modified namelist.input, it 

>> did work. For version 3.2.1 I think the course of this problem is 

>> different because it does work with master nodes.

>> On stability of computer you mentioned, you may be right. We updated 

>> network work card from 100M switch to 1 G. We had stable WRF running 

>> with old network card even though its performance was poor. However, 

>> I can run CMAQ4.7.1 with 64 processors ( we have 8 nodes each of 

>> which has 8 processors) successfully, and speedup factor is almost

>> 2.8 comparing against the system with old network card.

>> Thanks.

>> Feng

>> 

>> 

>> -----Original Message-----

>> From: wrfhelp [mailto:wrfhelp at ucar.edu]

>> Sent: Wednesday, January 05, 2011 7:24 PM

>> To: Feng Liu

>> Subject: Re: job hang up without error message when I used

>> 

>> Have you seen this problem with other versions of the model code 

>> before? Is your system stable?

>> Can you run other MPI jobs steadily on this system? What I am saying 

>> is that it is possible that it is problem with the computer, not the 

>> model code.

>> 

>> wrfhelp

>> 

>> On Jan 5, 2011, at 5:11 PM, Feng Liu wrote:

>> 

>>> Hi,

>>> Thanks for your response. But I am using WRF3.2.1 which has the same


>>> problem. I have no idea so far.

>>> Thanks.

>>> Feng

>>> 

>>> 

>>> -----Original Message-----

>>> From: wrfhelp [mailto:wrfhelp at ucar.edu]

>>> Sent: Wednesday, January 05, 2011 4:20 PM

>>> To: Feng Liu

>>> Subject: Re: job hang up without error message when I used

>>> 

>>> Mike was using 3.2 at the time, and the fix has been included in 

>>> 3.2.1.

>>> 

>>> wrfhelp

>>> 

>>> On Jan 5, 2011, at 1:30 PM, Feng Liu wrote:

>>> 

>>>> Hi,

>>>> I can run WRF3.2.1 successfully if I only use master node with 8 

>>>> processors. However, my jobs (with MPI) hand up when I was using 

>>>> more 16 processors or more than two nodes, no error message, no 

>>>> crashes. This problem was described by Michael Zulauf as below:

>>>> (see http://mailman.ucar.edu/pipermail/wrf-users/2010/001745.html

>>>> 

>>>> "My jobs sporadically (but usually eventually) hang up, most often 

>>>> after a new wrfout file is opened.  No error messages, no crashes

>>>> - the processes continue, but _all_ output stops.  I eventually 

>>>> just have to kill the job.  The wrfouts are small, and all output 

>>>> looks good up until the failed wrfout."

>>>> 

>>>> Mike mentioned he got a modified code from wrfhelp and seemed to 

>>>> fix this issue. I also need to know which code need to be modified 

>>>> and what is the problem related to? Thanks for support on fixing 

>>>> this problem.

>>>> Feng

>>>> 

>>> 

>>> wrfhelp

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Jatin Kala
Sent: Saturday, March 26, 2011 12:19 AM
To: wrf-users at ucar.edu
Subject: Re: [Wrf-users] WRF is "hanging"

 

Thanks for the suggestion Feng, but this is not related to namelist
inputs. The namelist I am running worked fine on  a different machine.

The issue here is that WRF simply hangs and does nothing at
initialisation of Grid 2. Ie, the rsl.out and rsl.error files print out:

 

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
84045408 b

 ytes allocated

 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
3084672 b

 ytes allocated

 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
file. **

 *

 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

 

and that's it. The rsl.error and rsl.out files do not keep growing in
size, there are no more prints, they just stop printing stuff. The job
however is still in the queue and does NOT error out, until the walltime
is elapsed. No wrfout_d0* files are created. 

 

Other people seem to have had this issue before:

 

http://mailman.ucar.edu/pipermail/wrf-users/2010/001749.html 

 

http://mailman.ucar.edu/pipermail/wrf-users/2010/001747.html 

 

 

Any help more than welcome.

 

Regards,

 

Jatin

 

 

 

From: Feng Liu [mailto:FLiu at azmag.gov] 
Sent: Saturday, 26 March 2011 9:04 AM
To: Jatin Kala; wrf-users at ucar.edu
Subject: RE: WRF is "hanging"

 

Hi Jatin,

I do not know exactly what is wrong for your case, but one thing you can
try is to reduce time_step in namelist.input by 3 times. Good luck.

Feng

 

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Jatin Kala
Sent: Thursday, March 24, 2011 7:29 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF is "hanging"

 

Dear WRF-users,

 

I have compiled WRF3.2 on our new supercomputing facility, and having
some trouble. Namely, WRF is just "hanging" at:

 

d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
84045408 b

 ytes allocated

 d01 2009-10-01_00:00:00  alloc_space_field: domain            2,
3084672 b

 ytes allocated

 d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input
file. **

 *

 d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input

 

 

The job remains in the queue, i.e, does not error out until walltime is
elapsed.

 

I have compiled with -O0 but that did not help. I have also compiled
with the updated "gen_allocs.c" form the WRF website, but that has not
helped either. I did do a "clean -a" before.

 

I have compiled WRF with the follows libs:

 

intel-compilers/2011.1.107

jasper/1.900.1

ncarg/5.2.1

mpi/intel/openmpi/1.4.2-qlc

netcdf/4.0.1/intel-2011.1.107

export WRFIO_NCD_LARGE_FILE_SUPPORT=1

 

Any help would be greatly appreciated!

 

Kind regards,

 

Jatin 

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From davidstephenbryan at yahoo.com  Fri Apr  1 12:07:11 2011
From: davidstephenbryan at yahoo.com (David Bryan)
Date: Fri, 1 Apr 2011 11:07:11 -0700 (PDT)
Subject: [Wrf-users] WRF Compilation Problems on Ubuntu 10.10
Message-ID: <413749.65936.qm@web56202.mail.re3.yahoo.com>

I'm compiling WRFv3.2.1 (gfortran, smpar, basic nesting) on Ubuntu 10.10 with 
gfortran. I succesfully compiled NetCDF, installing all needed packages (with 
the same gfortran) for
this build-essential, m4, gfortran and g++) and adding all
environment variables in the .bashrc. But the WRF compilation fails
with this first error:
?
"Fatal Error: Can't open module file 'wrf_data.mod' for reading at (1):
No such file or directory"
?
Can you please suggest a way to address this?? Thanks!
?
David Bryan

From jagan at tnau.ac.in  Fri Apr  1 23:05:44 2011
From: jagan at tnau.ac.in (jagan TNAU)
Date: Sat, 2 Apr 2011 10:35:44 +0530
Subject: [Wrf-users] solar radiation calculation
Message-ID: <BANLkTi=L8fy4vfYGd+Pii3XL3mOvnYYW5w@mail.gmail.com>

Hello Users,

I need to calculate the solar radiation received from the sun for the whole
day. The parameter SWDOWN output is likely to provide solution. But how to
calculate the accumulated solar radiation for the whole day.

-- 
With regards

Dr.R.Jagannathan
Professor of Agronomy,
Department of Agronomy
Tamil Nadu Agricultural University,
Coimbatore - 641 003 India

PHONE:  Mob: +91 94438 89891

DO NOT PRINT THIS E-MAIL UNLESS NECESSARY. THE ENVIRONMENT CONCERNS US ALL.
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From ahsanshah01 at gmail.com  Fri Apr  1 21:17:08 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Sat, 2 Apr 2011 08:17:08 +0500
Subject: [Wrf-users] WRF running parallel in cluster
Message-ID: <BANLkTinM_rttUP2HomgfaP=VTV3timT9Mw@mail.gmail.com>

Hello,

 I want to run WRF on multiple nodes in a linux cluster using openmpi,
giving the command *mpirun -np 4 ./wrf.exe* just submit it to the single
node . I don't know how to run it on other nodes as well. Help needed.

Regards,

-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From Jacob.Wimberley at noaa.gov  Sat Apr  2 13:07:50 2011
From: Jacob.Wimberley at noaa.gov (Jake Wimberley)
Date: Sat, 02 Apr 2011 14:07:50 -0500
Subject: [Wrf-users] WRF Compilation Problems on Ubuntu 10.10
Message-ID: <000301cbf169$4312d980$c9388c80$%wimberley@noaa.gov>

David:

 

This is likely a cascading error.  You might check to make sure that there
was not an error earlier in the build that prevented the wrf_data.mod module
from being compiled.  I have experienced lots of errors in the past where a
module fails to build, but Make ignores the error and continues compilation;
everything is OK in that case until something tries to use that module, then
you get another error similar to this one.

 

Jake Wimberley

Meteorologist

NWS WFO Milwaukee/Sullivan, Wis.

 

 

David Bryan said:

"I'm compiling WRFv3.2.1 (gfortran, smpar, basic nesting) on Ubuntu 10.10
with gfortran. I succesfully compiled NetCDF, installing all needed packages
(with the same gfortran) for this build-essential, m4, gfortran and g++) and
adding all environment variables in the .bashrc. But the WRF compilation
fails with this first error:

 

"Fatal Error: Can't open module file 'wrf_data.mod' for reading at (1):

No such file or directory""

 

 

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From moudipascal at yahoo.fr  Mon Apr  4 02:26:05 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Mon, 4 Apr 2011 09:26:05 +0100 (BST)
Subject: [Wrf-users] Need ncl  gen_be script
Message-ID: <85443.66952.qm@web29013.mail.ird.yahoo.com>

Hello to All,
Please, would someone sent me  the ncl gen_be scripts he has used? I would like 
to generate plots, but i got errors. I have some troubles.

 Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From william.gustafson at pnl.gov  Mon Apr  4 12:29:51 2011
From: william.gustafson at pnl.gov (Gustafson, William I)
Date: Mon, 4 Apr 2011 11:29:51 -0700
Subject: [Wrf-users] Vacancy: Post-doc for Scale-Adaptive Parameterization
 Development for Climate Models
Message-ID: <C9BF5C2F.8A74%william.gustafson@pnl.gov>

POST-DOC OPENING AT PACIFIC NORTHWEST NATIONAL LABORATORY

Job Title:   Post Doctorate RA - Scale-Adaptive Parameterization
             Development for Climate Models
Job ID:      300774
Location:    Pacific Northwest National Laboratories - Richland, WA
Directorate: Fundamental & Computational Sciences
Group:       Atmospheric Chemistry & Meteorology

Job Description
---------------
The Atmospheric Chemistry and Meteorology Group of the Atmospheric Sciences
and Global Change Division seeks a Post Doctoral Researcher to actively
participate in research involving the investigation and development of
scale-aware parameterizations for climate models. The position will target
the improvement of parameterizations for next-generation climate models with
multi-resolution domains. Work will focus on evaluating scale dependency of
current parameterization techniques and also on the development of new
techniques that will enable parameterizations to function across a range of
model grid spacings. Experience with regional and global models, along with
cloud parameterizations and the interplay between parameterizations is
desired. The PNNL group interacts with other leading climate science
activities nationally and internationally and this position can lead to high
visibility and leadership in the research community.

The successful candidate will be expected to:
*  Conduct technical research on reducing scale dependence of model
parameterizations 
*  Publish research results in highly visible, peer-reviewed venues
(conferences & journals)
*  Interact with internal and external research staff and domain scientists
for collaboration purposes
*  Participate and make presentations on the work
*  Participate in team meetings, and potentially interact with funding
clients

Minimum Requirements
--------------------
Candidates must have received a PhD within the past five years from an
accredited college or university.  All staff at the Pacific Northwest
National Laboratory must be able to demonstrate the legal right to work in
the United States.

Qualifications
--------------
* Familiarity with the WRF and/or CESM models, or equivalent, ideally for
applications ranging across scales
* Strong understanding of current climate model parameterization techniques
* Demonstrated ability to analyze observations and use them to evaluate and
understand model results
* Fluency in modern Fortran required, and at least a working familiarity
with an interpreted computer language (Perl, Python, IDL, etc.)
* Peer-reviewed publication record in a relevant area highly desired
* Ability to work independently and to efficiently deliver results
* Excellent verbal and written English communication skills

Equal Employment Opportunity
----------------------------
Pacific Northwest National Laboratory (PNNL) is an Affirmative Action /
Equal Opportunity Employer and supports diversity in the workplace.  All
employment decisions are made without regard to race, color, religion, sex,
national origin, age, disability, veteran status, marital or family status,
sexual orientation, gender identity, or genetic information.  All staff at
the Pacific Northwest National Laboratory must be able to demonstrate the
legal right to work in the United States.


Apply at <http://www.pnl.gov/atmospheric/jobs.stm> or <http://jobs.pnl.gov>.


_______________________________________________
William I. Gustafson Jr., Ph.D.
Scientist
ATMOSPHERIC SCIENCES AND GLOBAL CHANGE DIVISION
 
Pacific Northwest National Laboratory
P.O. 999, MSIN K9-30
Richland, WA  99352
Tel: 509-372-6110
William.Gustafson at pnl.gov
http://www.pnl.gov/atmospheric/staff/staff_info.asp?staff_num=5716
http://www.researcherid.com/rid/A-7732-2008


From bbrashers at Environcorp.com  Mon Apr  4 09:48:29 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Mon, 4 Apr 2011 08:48:29 -0700
Subject: [Wrf-users] WRF running parallel in cluster
In-Reply-To: <BANLkTinM_rttUP2HomgfaP=VTV3timT9Mw@mail.gmail.com>
References: <BANLkTinM_rttUP2HomgfaP=VTV3timT9Mw@mail.gmail.com>
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF3085206CC4155@irvine01.irvine.environ.local>

Are you using any queuing system like SGE, Torque, PBS, etc.?  In
OpenMPI, the mpirun (and mpiexec) are really just links to orterun.
Orterun is smart enough to get the list of hostnames to use from the
queuing system.

 

If you're not using a queuing system, then you need to tell orterun
which machines to use.  There's several ways, see `man orterun`.  You
could do any of these:

 

# cat hosts.txt

machine1

machine1

machine2

machine2

# orterun -np 4 -hostfile hosts.txt wrf.exe

# mpirun -np 4 -machinefile hosts.txt wrf.exe

# orterun -np 4 -host machine1,machine1,machine2,machine2 wrf.exe

 

Bart Brashers

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Ahsan Ali
Sent: Friday, April 01, 2011 8:17 PM
To: wrfhelp
Subject: [Wrf-users] WRF running parallel in cluster

 

Hello,

 

 I want to run WRF on multiple nodes in a linux cluster using openmpi,
giving the command mpirun -np 4 ./wrf.exe just submit it to the single
node . I don't know how to run it on other nodes as well. Help needed.

 

Regards,



-- 
Syed Ahsan Ali Bokhari 
Electronic Engineer (EE)


Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714

Cell # +923155145014

 



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From satyaban_2001 at rediffmail.com  Tue Apr  5 18:59:57 2011
From: satyaban_2001 at rediffmail.com (Satyaban Bishoyi Ratna)
Date: 6 Apr 2011 00:59:57 -0000
Subject: [Wrf-users] =?utf-8?q?Metgrid_problem-SST_in_ERA-Interim_data?=
Message-ID: <20110406005957.10400.qmail@f5mail-236-220.rediffmail.com>



		
			
			Dear User,I would like to update SST in my simulation with ERAIN data.
I could able to complete the simulation successfully, however the SST data
in the model is reading wrongly.
I have tried to verify the "met_em......" files in WPS and came to know that
the SST values are not correct in these files.
I have post processed the "met_em..." file for one tine using ARWpost and 
seen using GrADS that the SST values are "Contouring: -1.1e+30 to 1e+29 interval 1e+29".
The original SST grib data provided to WPS are correct and in degree K but 
I am surprise to see the wrong values in the files generated by "metgrid".
Can you please suggest how to solve this error.
Thanks in advance.

Best regards
Satyaban
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From Don.Morton at alaska.edu  Wed Apr  6 18:59:12 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Wed, 6 Apr 2011 16:59:12 -0800
Subject: [Wrf-users] WRF on bluefire
Message-ID: <BANLkTikcw_JAhNpZ9N3GzbutfhdiQUJ2Lw@mail.gmail.com>

Howdy, I'm getting ready to do some basic WRF testing on bluefire, and am
wondering if there are some centralized WRF resources already installed (for
example, all the geog files), so that I don't have to use up valuable disc
space repeating what possibly many other users have already done.  And, is
there a pre-compiled WPS and WRF on bluefire that people tend to use (at
least until they get into something that requires more fine-tuning)?  If so,
is there a resource out there that might describe all of this?  Or, does
everybody just install their own geog and WRF/WPS, etc. in their own user
space?

Thanks,

Don Morton

-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://www.arsc.edu/~morton/
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From bbrashers at Environcorp.com  Wed Apr  6 09:46:07 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Wed, 6 Apr 2011 08:46:07 -0700
Subject: [Wrf-users] WRF Problem running in Parallel
In-Reply-To: <BANLkTi=X_QS+hMQTL+iC-Z-9Ukf3+gO65Q@mail.gmail.com>
References: <BANLkTi=X_QS+hMQTL+iC-Z-9Ukf3+gO65Q@mail.gmail.com>
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF3085206D3CAD4@irvine01.irvine.environ.local>

Looks the me like OpenMPI is not installed on all the compute nodes
within your cluster.  Note the line:

 

bash: orted: command not found

 

which says it can't run, because the executable daemon for OpenMPI
doesn't exist (on the compute node).

 

You need to install OpenMPI on all the nodes.  It looks like you're
using a RocksCluster.org cluster (based on the naming of the compute
nodes).  If so, you could install OpenMPI in /share/apps/openmpi (or
something similar under /share/apps).  Everything in /share/apps is
shared via NFS to all the nodes in the cluster.  Alternatively, you
could create an RPM of the OpenMPI bits, and install the RPM on all the
nodes in your cluster.

 

When running OpenMPI's configure, you could use something like this:

 

# configure --with-tm=/opt/lsf --prefix=/share/apps/openmpi

 

Where you'll have to adjust the path to LSF to be the real path.

 

When you run WRF using a properly installed orterun, you won't have to
specify the -np or -hostfile.  Just "orterun real.exe" or "orterun
wrf.exe".

 

Bart Brashers

 

From: Ahsan Ali [mailto:ahsanshah01 at gmail.com] 
Sent: Tuesday, April 05, 2011 11:57 PM
To: Bart Brashers
Subject: WRF Problem running in Parallel

 

Dear Bart

 

 It gives following error for each command. We have LSF installed but am
not sure how to integrate WRF with LSF.

 

 

[root at pmd02 em_real]# orterun -np 4 -hostfile hosts.txt real.exe 

bash: orted: command not found

------------------------------------------------------------------------
--

A daemon (pid 13139) died unexpectedly with status 127 while attempting

to launch so we are aborting.

 

There may be more information reported by the environment (see above).

 

This may be because the daemon was unable to find all the needed shared

libraries on the remote node. You may set your LD_LIBRARY_PATH to have
the

location of the shared libraries on the remote nodes and this will

automatically be forwarded to the remote nodes.

------------------------------------------------------------------------
--

------------------------------------------------------------------------
--

orterun noticed that the job aborted, but has no info as to the process

that caused that situation.

------------------------------------------------------------------------
--

bash: orted: command not found

------------------------------------------------------------------------
--

orterun was unable to cleanly terminate the daemons on the nodes shown

below. Additional manual cleanup may be required - please refer to

the "orte-clean" tool for assistance.

------------------------------------------------------------------------
--

        compute-02-01 - daemon did not report back when launched

        compute-02-02 - daemon did not report back when launched

 

 

 

 

 

Are you using any queuing system like SGE, Torque, PBS, etc.?  In
OpenMPI, the mpirun (and mpiexec) are really just links to orterun.
Orterun is smart enough to get the list of hostnames to use from the
queuing system.



If you're not using a queuing system, then you need to tell orterun
which machines to use.  There's several ways, see `man orterun`.  You
could do any of these:



# cat hosts.txt

machine1

machine1

machine2

machine2

# orterun -np 4 -hostfile hosts.txt wrf.exe

# mpirun -np 4 -machinefile hosts.txt wrf.exe

# orterun -np 4 -host machine1,machine1,machine2,machine2 wrf.exe



Bart Brashers

-- 
Syed Ahsan Ali Bokhari 
Electronic Engineer (EE)


Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714

Cell # +923155145014

 



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From maria.frediani at gmail.com  Wed Apr  6 12:18:06 2011
From: maria.frediani at gmail.com (Maria Eugenia)
Date: Wed, 6 Apr 2011 14:18:06 -0400
Subject: [Wrf-users] Wrf-users Digest, Vol 80, Issue 5
In-Reply-To: <mailman.9.1302112803.7677.wrf-users@ucar.edu>
References: <mailman.9.1302112803.7677.wrf-users@ucar.edu>
Message-ID: <BANLkTinmpQpeE7AGYhdy9eOh55NENoJRug@mail.gmail.com>

Metgrid problem-SST in ERA-Interim data (Satyaban Bishoyi Ratna)

Dear Satyaban,

I had the same problem when using ECMWF global analysis. I believe
this problem comes from a difference between WRF's and ECMWF's
landmask. To solve that I interpolated the original SST field (from
ECMWF grib file) over the entire domain, i.e, expanding the SST field
into the land. I used this resulting file as a secondary data input in
WPS. It worked just fine. Pls contact me if you need more details on
this procedure.
Good luck

Maria E. B. Frediani
-------------------------------------------------------------------------------------
Visiting Scholar
University of Connecticut
School of Engineering
261 Glenbrook Rd
Storrs, CT 06269
frediani at engr.uconn.edu



On Wed, Apr 6, 2011 at 2:00 PM,  <wrf-users-request at ucar.edu> wrote:
> Send Wrf-users mailing list submissions to
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>
> ? 1. Metgrid problem-SST in ERA-Interim data (Satyaban Bishoyi Ratna)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: 6 Apr 2011 00:59:57 -0000
> From: "Satyaban Bishoyi Ratna" <satyaban_2001 at rediffmail.com>
> Subject: [Wrf-users] Metgrid problem-SST in ERA-Interim data
> To: "Wrf Users " <wrf-users at ucar.edu>
> Message-ID: <20110406005957.10400.qmail at f5mail-236-220.rediffmail.com>
> Content-Type: text/plain; charset="utf-8"
>
>
>
>
>
> ? ? ? ? ? ? ? ? ? ? ? ?Dear User,I would like to update SST in my simulation with ERAIN data.
> I could able to complete the simulation successfully, however the SST data
> in the model is reading wrongly.
> I have tried to verify the "met_em......" files in WPS and came to know that
> the SST values are not correct in these files.
> I have post processed the "met_em..." file for one tine using ARWpost and
> seen using GrADS that the SST values are "Contouring: -1.1e+30 to 1e+29 interval 1e+29".
> The original SST grib data provided to WPS are correct and in degree K but
> I am surprise to see the wrong values in the files generated by "metgrid".
> Can you please suggest how to solve this error.
> Thanks in advance.
>
> Best regards
> Satyaban
> -------------- next part --------------
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>
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>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 80, Issue 5
> ****************************************
>

From tilkara17 at gmail.com  Wed Apr  6 15:10:30 2011
From: tilkara17 at gmail.com (Florencia Luraschi)
Date: Wed, 6 Apr 2011 18:10:30 -0300
Subject: [Wrf-users] Viento en niveles z(km)
Message-ID: <BANLkTi=3tvXUsmDCJ+rXqg2uKvnHWYvzgw@mail.gmail.com>

Hola,
Estoy trabajando con la versi?n 3.2 del modelo, configurado para dos
anidados sobre la regi?n de Am?rica del Sur.
Mi problema esta en calcular el viento en niveles z, es decir en km y no en
niveles de presi?n. En la ARWUsersGuideV3 dice que para obtener eso cambie
en la namelist.ARWpost la opci?n interp_levels por n?meros crecientes,
teniendo
interp_levels =
0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.10,0.12,0.13,/
(necesitoa 10,20, 50, 70 metros por ejemplo)
en lugar de tener
interp_levels =
1000.,950.,900.,850.,800.,750.,700.,650.,600.,550.,500.,450.,400.,350.,300.,250.,200.,150.,100.,/
Pero cuando gr?fico los campos con grads, quedan regiones sin datos. Ahora,
si comparo el viento a 10m calculado de esta forma con el viento a 10m que
calcula el ARW, (es decir que es una variable que se puede elegir de la
lista de variables disponibles con el ARWpost), se ve claramente que no esta
calculando lo mismo.
Esto es as? y no hay forma de mejorarlo o estoy haciendo algo mal o me falta
aclarlar alguna cosa?
Desde ya muchas gracias y espero que alguien pueda ayudarme.

Florencia Luraschi
Servicio Meteorol?gico Nacional, Argentina
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From nbon0004 at um.edu.mt  Sat Apr  9 12:08:40 2011
From: nbon0004 at um.edu.mt (Norbert Bonnici)
Date: Sat, 9 Apr 2011 20:08:40 +0200
Subject: [Wrf-users] WPS 3.3 compilation error
Message-ID: <BANLkTim5S0a4+YCfK=0V_Q7y9sE5pZJBcg@mail.gmail.com>

Dear users,
I downloaded the latest version of WPS (3.3) and when I tried to
compile it I got this final error:

make[1]: Leaving directory `/home/nbon0004/WRF/WPS/util/src'
if [ -h height_ukmo.exe ] ; then \
		/bin/rm -f height_ukmo.exe ; \
	fi ; \
	if [ -h ../height_ukmo.exe ] ; then \
		/bin/rm -f ../height_ukmo.exe ; \
	fi ; \
	if [ -e src/height_ukmo.exe ] ; then \
		ln -sf src/height_ukmo.exe . ; \
	fi

I had previously successfully compiled 3.2 and 3.2.1 on the same
system, I do not know why I'm getting this error -_-
Regards
-- 
Norbert Bonnici

From yingli at mail.usf.edu  Fri Apr  8 16:25:08 2011
From: yingli at mail.usf.edu (yingli zhu)
Date: Fri, 8 Apr 2011 18:25:08 -0400
Subject: [Wrf-users] Where is the 4DVAR nonlinear model?
Message-ID: <A243BB3E-5C02-40BA-804B-D3EAF1B2754F@mail.usf.edu>

Hi, everyone,
The new version of WRFDA has been released. Does the new 4DVAR not need WRFNL now? How does the 4DVAR use the nonlinear model?
Best,
Yingli

From pliu34 at gatech.edu  Mon Apr 11 14:58:18 2011
From: pliu34 at gatech.edu (Liu, Peng)
Date: Mon, 11 Apr 2011 16:58:18 -0400 (EDT)
Subject: [Wrf-users] difference of landsea and landmask field
Message-ID: <240319177.315606.1302555498385.JavaMail.root@mail5.gatech.edu>

Dear wrf users,
  I am confused about the field of landmask in the output file of geog.exe and the landsea field in the output file of metgrid.exe. As far as my understanding, the landmask field comes from static landuse data and the landsea field comes from the meteorological data
( namely the input of WRF). In my case, my input data has the land sea flag of its own, so it is written into intermediate file and further written into metgrid.exe output file. So the metgrid.exe output has both the field of landsea and landmask.
I wonder what if the landmask and landsea field are not the same? I mean when WPS interpolates the meteorological data horizontally, which field is used to control whether or not certain grid is water or land? landmask or landsea?
And when running wrf.exe, which field is to control the land and sea? 

Thank you very much

Peng

From ahmed4kernel at gmail.com  Tue Apr 12 15:09:22 2011
From: ahmed4kernel at gmail.com (ahmed lasheen)
Date: Tue, 12 Apr 2011 23:09:22 +0200
Subject: [Wrf-users] WPS Compilation error
Message-ID: <BANLkTim+tnN=NngY1cutSCnXRGCXBHUx-A@mail.gmail.com>

Hello,
I am using Fedora 14 ,PGI 10.0 and Netcdf 4.1.1
I am working on the WPS 3.3 , when i compile it i found alot of errors
i have redirected to compile.log file and it is attached in the email
I  choose the following  option in the configure
  10.  PC Linux x86_64 (IA64 and Opteron), PGI compiler 5.2 or higher,
serial
i donot know what cause these errors
thanks in advance
Ahmed
-- 
===============
Ahmed Lasheen
Junior researcher at Cairo Numerical Weather Prediction Center (CNWPC)
Egyptian Meteorological Authority(EMA)
Cairo,Egypt
===============
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From dbh409 at ku.edu  Thu Apr 14 07:38:51 2011
From: dbh409 at ku.edu (Huber, David)
Date: Thu, 14 Apr 2011 13:38:51 +0000
Subject: [Wrf-users] Noah fix in WRF 3.3
Message-ID: <A644457BC398E247871467886561832602889F@EXCH10-MBX-02.home.ku.edu>

Hello,

I noticed in the fixes listed for WRF 3.3 that the Noah LSM underground runoff was fixed.  I was wondering if you know exactly what the problem was and how it was fixed.

Thanks,

Dave

From Michael.Zulauf at iberdrolaren.com  Tue Apr 12 14:44:03 2011
From: Michael.Zulauf at iberdrolaren.com (Zulauf, Michael)
Date: Tue, 12 Apr 2011 13:44:03 -0700
Subject: [Wrf-users] cluster interconnect - Infiniband vs 10 gigabit ethernet
Message-ID: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>

Hi all - quick question.  Does anyone have data or experience comparing
the performance and scaling of WRF with cluster interconnects utilizing
10 gigabit ethernet (10GigE) vs Infiniband?

We're looking to expand and update our computing resources, and we'd
originally spec'd it with Infiniband.  The nodes will have either dual
quad- or hex-core Nehalem type processors.  There's been some IT
pushback, suggesting that we should go with 10GigE.  I don't have any
direct experience with 10GigE, but my experience with 1GigE shows that
Infiniband scales far better.

I've seen what I'd consider marketing material on the web that suggests
that 10GigE is comparable to Infiniband, but they don't specifically
mention WRF.  On the other hand, I've seen other sites that suggest an
Infiniband interconnect is far superior.  Again, these don't
specifically mention WRF.  I know the particular application in use is
critical when deciding these things, and that WRF is a pretty demanding
application when it comes to the interconnect.

My suspicion is that Infiniband is still significantly superior, but if
I'm going to be able to make any headway with IT, then I'll probably
need some type of numbers to back up my arguments.

Can anyone help?

Thanks,
Mike

-- 

PLEASE NOTE - NEW E-MAIL ADDRESS:
michael.zulauf at iberdrolaren.com

Mike Zulauf
Meteorologist, Lead Senior
Wind Asset Management 
Iberdrola Renewables
1125 NW Couch, Suite 700
Portland, OR 97209
Office: 503-478-6304  Cell: 503-913-0403


Please be advised that email addresses for Iberdrola Renewables personnel have changed to first.last at iberdrolaREN.com effective Aug. 16, 2010.  Please make a note.  Thank you.

This message is intended for the exclusive attention of the recipient(s) indicated.  Any information contained herein is strictly confidential and privileged.  If you are not the intended recipient, please notify us by return e-mail and delete this message from your computer system. Any unauthorized use, reproduction, alteration, filing or sending of this message and/or any attached files may lead to legal action being taken against the party(ies) responsible for said unauthorized use. Any opinion expressed herein is solely that of the author(s) and does not necessarily represent the opinion of the Company. The sender does not guarantee the integrity, speed or safety of this message, and does not accept responsibility for any possible damage arising from the interception, incorporation of viruses, or any other damage as a result of manipulation.



From apsims at ncsu.edu  Thu Apr 14 12:32:47 2011
From: apsims at ncsu.edu (Aaron Sims)
Date: Thu, 14 Apr 2011 14:32:47 -0400
Subject: [Wrf-users] cluster interconnect - Infiniband vs 10 gigabit
	ethernet
In-Reply-To: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
References: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
Message-ID: <4DA73DCF.6060108@ncsu.edu>

Mike,

Its been my experience that latency is the critical issue when running 
wrf in parallel, not raw speed.  I would spec out the latency of 10GigE, 
which I think is about the same as GigE, and compare it to Infiniband.
I think youll find infiniband is better in this case.

Aaron

Zulauf, Michael wrote:
> Hi all - quick question.  Does anyone have data or experience comparing
> the performance and scaling of WRF with cluster interconnects utilizing
> 10 gigabit ethernet (10GigE) vs Infiniband?
>
> We're looking to expand and update our computing resources, and we'd
> originally spec'd it with Infiniband.  The nodes will have either dual
> quad- or hex-core Nehalem type processors.  There's been some IT
> pushback, suggesting that we should go with 10GigE.  I don't have any
> direct experience with 10GigE, but my experience with 1GigE shows that
> Infiniband scales far better.
>
> I've seen what I'd consider marketing material on the web that suggests
> that 10GigE is comparable to Infiniband, but they don't specifically
> mention WRF.  On the other hand, I've seen other sites that suggest an
> Infiniband interconnect is far superior.  Again, these don't
> specifically mention WRF.  I know the particular application in use is
> critical when deciding these things, and that WRF is a pretty demanding
> application when it comes to the interconnect.
>
> My suspicion is that Infiniband is still significantly superior, but if
> I'm going to be able to make any headway with IT, then I'll probably
> need some type of numbers to back up my arguments.
>
> Can anyone help?
>
> Thanks,
> Mike
>
>   

From mmkamal at sciborg.uwaterloo.ca  Thu Apr 14 13:31:52 2011
From: mmkamal at sciborg.uwaterloo.ca (mmkamal at sciborg.uwaterloo.ca)
Date: Thu, 14 Apr 2011 15:31:52 -0400
Subject: [Wrf-users] cluster interconnect - Infiniband vs 10 gigabit
 ethernet
In-Reply-To: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
References: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
Message-ID: <20110414153152.208531h1uie5fyyo@www.nexusmail.uwaterloo.ca>

Hi Mike,


Yes, interconnect is a big issue while running WRF on a HPC cluster.  
InfiniBand increases WRF performance by up to 115% for cluster size of  
24 nodes. I have used GigE since last one year but when I get the  
opportunity to use Infiniband it really surprised me. You can take a  
look on the following two resources for further details.


http://www.hpcadvisorycouncil.com/pdf/081016a%20WRF%20Model%20analysis.pdf

http://www.linuxclustersinstitute.org/conferences/archive/2009/PDF/Shainer_64557.pdf


Thanks
Kamal






Quoting "Zulauf, Michael" <Michael.Zulauf at iberdrolaren.com>:

> Hi all - quick question. Does anyone have data or experience comparing
> the performance and scaling of WRF with cluster interconnects utilizing
> 10 gigabit ethernet (10GigE) vs Infiniband?
>
> We're looking to expand and update our computing resources, and we'd
> originally spec'd it with Infiniband. The nodes will have either dual
> quad- or hex-core Nehalem type processors. There's been some IT
> pushback, suggesting that we should go with 10GigE. I don't have any
> direct experience with 10GigE, but my experience with 1GigE shows that
> Infiniband scales far better.
>
> I've seen what I'd consider marketing material on the web that suggests
> that 10GigE is comparable to Infiniband, but they don't specifically
> mention WRF. On the other hand, I've seen other sites that suggest an
> Infiniband interconnect is far superior. Again, these don't
> specifically mention WRF. I know the particular application in use is
> critical when deciding these things, and that WRF is a pretty demanding
> application when it comes to the interconnect.
>
> My suspicion is that Infiniband is still significantly superior, but if
> I'm going to be able to make any headway with IT, then I'll probably
> need some type of numbers to back up my arguments.
>
> Can anyone help?
>
> Thanks,
> Mike
>
> --
>
> PLEASE NOTE - NEW E-MAIL ADDRESS:
> michael.zulauf at iberdrolaren.com
>
> Mike Zulauf
> Meteorologist, Lead Senior
> Wind Asset Management
> Iberdrola Renewables
> 1125 NW Couch, Suite 700
> Portland, OR 97209
> Office: 503-478-6304 Cell: 503-913-0403
>
>
> Please be advised that email addresses for Iberdrola Renewables  
> personnel have changed to first.last at iberdrolaREN.com effective Aug.  
> 16, 2010. Please make a note. Thank you.
>
> This message is intended for the exclusive attention of the  
> recipient(s) indicated. Any information contained herein is strictly  
> confidential and privileged. If you are not the intended recipient,  
> please notify us by return e-mail and delete this message from your  
> computer system. Any unauthorized use, reproduction, alteration,  
> filing or sending of this message and/or any attached files may lead  
> to legal action being taken against the party(ies) responsible for  
> said unauthorized use. Any opinion expressed herein is solely that  
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> the Company. The sender does not guarantee the integrity, speed or  
> safety of this message, and does not accept responsibility for any  
> possible damage arising from the interception, incorporation of  
> viruses, or any other damage as a result of manipulation.
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>






From or at belgingur.is  Thu Apr 14 15:00:45 2011
From: or at belgingur.is (=?iso-8859-1?Q?=D3lafur_R=F6gnvaldsson?=)
Date: Thu, 14 Apr 2011 21:00:45 +0000
Subject: [Wrf-users] cluster interconnect - Infiniband vs 10 gigabit
	ethernet
In-Reply-To: <4DA73DCF.6060108@ncsu.edu>
References: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
	<4DA73DCF.6060108@ncsu.edu>
Message-ID: <6B5E3FCB-5221-4ABD-B15A-425B1B9A146B@belgingur.is>

I agree with Aaron, it's the low latency of the InfiniBand that makes it a more suitable inter-node fabric than 1/10G Ethernet.

Kind regards, ?lafur.

> Mike,
> 
> Its been my experience that latency is the critical issue when running 
> wrf in parallel, not raw speed.  I would spec out the latency of 10GigE, 
> which I think is about the same as GigE, and compare it to Infiniband.
> I think youll find infiniband is better in this case.
> 
> Aaron
> 
> Zulauf, Michael wrote:
>> Hi all - quick question.  Does anyone have data or experience comparing
>> the performance and scaling of WRF with cluster interconnects utilizing
>> 10 gigabit ethernet (10GigE) vs Infiniband?
>> 
>> We're looking to expand and update our computing resources, and we'd
>> originally spec'd it with Infiniband.  The nodes will have either dual
>> quad- or hex-core Nehalem type processors.  There's been some IT
>> pushback, suggesting that we should go with 10GigE.  I don't have any
>> direct experience with 10GigE, but my experience with 1GigE shows that
>> Infiniband scales far better.
>> 
>> I've seen what I'd consider marketing material on the web that suggests
>> that 10GigE is comparable to Infiniband, but they don't specifically
>> mention WRF.  On the other hand, I've seen other sites that suggest an
>> Infiniband interconnect is far superior.  Again, these don't
>> specifically mention WRF.  I know the particular application in use is
>> critical when deciding these things, and that WRF is a pretty demanding
>> application when it comes to the interconnect.
>> 
>> My suspicion is that Infiniband is still significantly superior, but if
>> I'm going to be able to make any headway with IT, then I'll probably
>> need some type of numbers to back up my arguments.
>> 
>> Can anyone help?
>> 
>> Thanks,
>> Mike
>> 
>> 
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

--
Kve?ja/regards,
?lafur R?gnvaldsson
Reiknistofa ? ve?urfr??i - Belgingur
www.riv.is - www.belgingur.is



From or at belgingur.is  Thu Apr 14 15:36:03 2011
From: or at belgingur.is (=?iso-8859-1?Q?=D3lafur_R=F6gnvaldsson?=)
Date: Thu, 14 Apr 2011 21:36:03 +0000
Subject: [Wrf-users] WPS Compilation error
In-Reply-To: <BANLkTim+tnN=NngY1cutSCnXRGCXBHUx-A@mail.gmail.com>
References: <BANLkTim+tnN=NngY1cutSCnXRGCXBHUx-A@mail.gmail.com>
Message-ID: <AD4E6641-415C-4ED6-BC43-4EFD8D473FF4@belgingur.is>

Hello Ahmed.

Few things come to mind.

1) I believe that as of version 4 of the GCC compiler the "g2c" procedure is no longer supported. Consequently you can not compile "plotfmt.exe" and "plotgrids.exe".

2) I've just installed the latest versions of WRF and WPS on a Ubuntu 10.10 system. Rather than compiling the JPEG compression libraries, I used the update manager of Ubuntu (called "aptitude") to install the necessary software. I believe Fedora has similar (maybe "yum" or "apt"). I recommend you try installing "libjpeg" using Fedora's update manager.

3) Make sure you have the correct path to the PGI libraries. By default the configure.wps file points to version 5.2 of the PGI suite. Also, check if your libX11 library is located under /lib/X11R (as by default in configure.wps) or if it is under /usr/lib (if so, you have to modify the configure.wps file accordingly).

Once you have checked this and installed the jpeg library, you should be able to compile everything (with the exceptions of "plotfmt.exe" and "plotgrids.exe").

Hope this helps.

Best, ?lafur.

> Hello,
> I am using Fedora 14 ,PGI 10.0 and Netcdf 4.1.1 
> I am working on the WPS 3.3 , when i compile it i found alot of errors
> i have redirected to compile.log file and it is attached in the email
> I  choose the following  option in the configure  
>   10.  PC Linux x86_64 (IA64 and Opteron), PGI compiler 5.2 or higher, serial
> i donot know what cause these errors
> thanks in advance 
> Ahmed
> -- 
> ===============
> Ahmed Lasheen
> Junior researcher at Cairo Numerical Weather Prediction Center (CNWPC)
> Egyptian Meteorological Authority(EMA)
> Cairo,Egypt 
> ===============
> 
> <compile.log>_______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

--
Kve?ja/regards,
?lafur R?gnvaldsson
Reiknistofa ? ve?urfr??i - Belgingur
www.riv.is - www.belgingur.is



From wrf at nusculus.com  Thu Apr 14 13:11:43 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Thu, 14 Apr 2011 13:11:43 -0600
Subject: [Wrf-users] Noah fix in WRF 3.3
In-Reply-To: <A644457BC398E247871467886561832602889F@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E247871467886561832602889F@EXCH10-MBX-02.home.ku.edu>
Message-ID: <BANLkTinUscUmeF4AR4H-XbKvaAP6jSSbaw@mail.gmail.com>

Greetings,

I reported that bug and they correctly, imho, fixed it.

The runoff variable is meant to be a composite of two variables,  runoff2
and runoff3, which are two different kinds of underground runoff valaues.
But they added them together twice, once in module_sf_noahlsm.F and again in
module_sf_noahdrv.F, which caused runoff3 to get counted twice. Runoff2 is
the normal flow of water out the bottom of the soil. Runoff3 is the excess
water if the bottom soil layer is somehow more than saturated - the excess
is just taken out.

If you use such things, please be aware that the two accumulated values,
SFCRUNOFF and UDRUNOFF are not set to zero at the beginning of a run for
Noah. It is for RUC LSM. You may get a zero initial value by chance but
don't depend on that, I don't. I reported this to wrfhelp, but was not able
to get the idea across that accumulated values should start with zero. So
they didn't fix it. Here is what I did to set things to zero in V3.2.1:

In module_sf_noahdrv.F, about line 652, which is within the loops going thru
every cell during just the first timestep, I added these lines:

          ! Initialize surface and under ground runoff values
          SFCRUNOFF(I,J) = 0.0
          UDRUNOFF(I,J) = 0.0

Yes, I know that Fortran lets you set all values in an array without
looping, but I try to make my code fit in with that to which I am adding.

By the way, the variables are SFCRUNOFF and UDRUNOFF in the code, but
SFCROFF and UDROFF in the output files.

Hope that helps,
Kevin

On Thu, Apr 14, 2011 at 7:38 AM, Huber, David <dbh409 at ku.edu> wrote:

> Hello,
>
> I noticed in the fixes listed for WRF 3.3 that the Noah LSM underground
> runoff was fixed.  I was wondering if you know exactly what the problem was
> and how it was fixed.
>
> Thanks,
>
> Dave
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
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From saji at u-aizu.ac.jp  Thu Apr 14 16:51:48 2011
From: saji at u-aizu.ac.jp (Saji Hameed)
Date: Fri, 15 Apr 2011 07:51:48 +0900
Subject: [Wrf-users] cluster interconnect - Infiniband vs 10 gigabit
	ethernet
In-Reply-To: <6B5E3FCB-5221-4ABD-B15A-425B1B9A146B@belgingur.is>
References: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
	<4DA73DCF.6060108@ncsu.edu>
	<6B5E3FCB-5221-4ABD-B15A-425B1B9A146B@belgingur.is>
Message-ID: <BANLkTi=37qNA+wyJ5PtdqAdU_Q01TiYoDg@mail.gmail.com>

Very good. I am considering Infiniband too, based on the work that is
mentioned by Kamal.  Anybody has any idea of the cost involved in Infiniband
infrastructure?

saji

2011/4/15 ?lafur R?gnvaldsson <or at belgingur.is>

> I agree with Aaron, it's the low latency of the InfiniBand that makes it a
> more suitable inter-node fabric than 1/10G Ethernet.
>
> Kind regards, ?lafur.
>
> > Mike,
> >
> > Its been my experience that latency is the critical issue when running
> > wrf in parallel, not raw speed.  I would spec out the latency of 10GigE,
> > which I think is about the same as GigE, and compare it to Infiniband.
> > I think youll find infiniband is better in this case.
> >
> > Aaron
> >
> > Zulauf, Michael wrote:
> >> Hi all - quick question.  Does anyone have data or experience comparing
> >> the performance and scaling of WRF with cluster interconnects utilizing
> >> 10 gigabit ethernet (10GigE) vs Infiniband?
> >>
> >> We're looking to expand and update our computing resources, and we'd
> >> originally spec'd it with Infiniband.  The nodes will have either dual
> >> quad- or hex-core Nehalem type processors.  There's been some IT
> >> pushback, suggesting that we should go with 10GigE.  I don't have any
> >> direct experience with 10GigE, but my experience with 1GigE shows that
> >> Infiniband scales far better.
> >>
> >> I've seen what I'd consider marketing material on the web that suggests
> >> that 10GigE is comparable to Infiniband, but they don't specifically
> >> mention WRF.  On the other hand, I've seen other sites that suggest an
> >> Infiniband interconnect is far superior.  Again, these don't
> >> specifically mention WRF.  I know the particular application in use is
> >> critical when deciding these things, and that WRF is a pretty demanding
> >> application when it comes to the interconnect.
> >>
> >> My suspicion is that Infiniband is still significantly superior, but if
> >> I'm going to be able to make any headway with IT, then I'll probably
> >> need some type of numbers to back up my arguments.
> >>
> >> Can anyone help?
> >>
> >> Thanks,
> >> Mike
> >>
> >>
> > _______________________________________________
> > Wrf-users mailing list
> > Wrf-users at ucar.edu
> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
> --
> Kve?ja/regards,
> ?lafur R?gnvaldsson
> Reiknistofa ? ve?urfr??i - Belgingur
> www.riv.is - www.belgingur.is
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 

Saji N Hameed,
ARC-ENV, Center for Advanced Information Science and Technology,
University of Aizu, Tsuruga, Ikki-machi,
Aizuwakamatsu-shi, Fukushima 965-8580,
Japan

Tel: +81242 37-2736
 email: saji at u-aizu.ac.jp
 url: http://www.u-aizu.ac.jp
 bib: http://www.researcherid.com/rid/B-9188-2009
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From andrew.robbie at gmail.com  Mon Apr 18 04:29:48 2011
From: andrew.robbie at gmail.com (Andrew Robbie (Gmail))
Date: Mon, 18 Apr 2011 20:29:48 +1000
Subject: [Wrf-users] cluster interconnect - Infiniband vs 10 gigabit
	ethernet
In-Reply-To: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
References: <B2A259FAA3CF26469FF9A7C7402C49970E6E6670@POREXUW03.ppmenergy.us>
Message-ID: <CC681797-6F1D-4DF5-B8D3-04F5FBA5EA6F@gmail.com>

On 13/04/2011, at 6:44 AM, Zulauf, Michael wrote:

> Hi all - quick question.  Does anyone have data or experience  
> comparing
> the performance and scaling of WRF with cluster interconnects  
> utilizing
> 10 gigabit ethernet (10GigE) vs Infiniband?

As people have said, the lower latency of IB (especially with the  
latest generation
Mellanox and QLogic HBAs) makes it a better choice.

In our experience the added speed of QDR (quad data rate IB, 40Gbit/s)  
does not
provide much improvement over DDR IB. However, the extra bandwidth is  
really
useful if you plan to use the IB network for storage (NFS/Lustre/PVFS2  
etc).

>  I don't have any
> direct experience with 10GigE, but my experience with 1GigE shows that
> Infiniband scales far better.

Comparing with IB with GigE is not really fair. But IB will scale  
better than 10GigE
in the data center. GigE is easier to maintain as the drivers are  
prepackaged and
just work, which makes it a reasonable choice for small clusters.

> I've seen what I'd consider marketing material on the web that  
> suggests
> that 10GigE is comparable to Infiniband, but they don't specifically
> mention WRF.  On the other hand, I've seen other sites that suggest an
> Infiniband interconnect is far superior.  Again, these don't
> specifically mention WRF.  I know the particular application in use is
> critical when deciding these things, and that WRF is a pretty  
> demanding
> application when it comes to the interconnect.

Some 10GigE switches have impressively low latency, but not as good as  
IB. Also,
in our experience 10GigE switches cost more. Maybe because of the  
market segments
they target like 'Enterprise Switching' rather than HPC.

The main reason to have 10GigE is to connect distributed clusters, as  
sending IB
across a WAN is challenging. Also good to have the storage nodes with  
IB and 10GigE,
IB for inside the cluster and 10GigE to serve results to external  
clients (eg desktop
workstations). That is, 10GigE is the interface to the corporate IT  
network, via the head
node and the file server nodes.

> My suspicion is that Infiniband is still significantly superior, but  
> if
> I'm going to be able to make any headway with IT, then I'll probably
> need some type of numbers to back up my arguments.

Are they going to set up and manage your cluster? Tune MPI to run on  
10GigE? Will
they provide money to pay for a more expensive 10GigE solution and  
make the cluster
30% bigger to make up for the slower 10GigE? I doubt it. Offer them a  
10GigE pipe
to connect to their systems and they will probably be happy.

Andrew


From ebeigi3 at tigers.lsu.edu  Sun Apr 17 22:52:26 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Mon, 18 Apr 2011 00:52:26 -0400
Subject: [Wrf-users] installing netcdf
Message-ID: <BANLkTimS5xAeq78UV2XKuVBVN=ctOg4Z3g@mail.gmail.com>

Thanks for your previous help. I am installing netcdf.4.1.2 and before that
i installed zlib , libpng and jasper library  which is needed for WPS. when
i want to install netcdf, it asks for curl directory which make me to
install curl. my question is that : would it be possible to use this command
for sharing other installed libraries with netcdf:

CC=icc FC=ifort ./configure --prefix=/home/ehsan/netcdf
--with-zlib=/home/ehsan zlib --with-libpng=/home/ehsan/libpng
--with-jasper=/home/ehsan/jasper --with curl=/home/ehsan/curl

Best Regards

Ehsan
-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From hamed319 at yahoo.com  Sat Apr 16 09:45:40 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Sat, 16 Apr 2011 08:45:40 -0700 (PDT)
Subject: [Wrf-users] NETCDF Installation error
Message-ID: <931873.55276.qm@web161213.mail.bf1.yahoo.com>

Dear All, 
I just installed both ifort and icc but in the installation of NETCDF I got this:

Fatal Error: This program was not built to run on the processor in your system.
The allowed processors are: Intel(R) Core(TM) Duo processors and compatible Intel processors with supplemental Streaming SIMD Extensions 3 (SSSE3) instruction support.

configure:5275: $? = 1
configure:5282: error: in `/home/hamed/netcdf-4.1.1':
configure:5286: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.

Any Idea?
Thanks in advance,
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From hamed319 at yahoo.com  Mon Apr 18 06:04:10 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Mon, 18 Apr 2011 05:04:10 -0700 (PDT)
Subject: [Wrf-users] WPS,Grib2 making ungrib.exe error
Message-ID: <641452.40406.qm@web161217.mail.bf1.yahoo.com>


Dear all,
I've been trying to compile WPS with grib2 option. In my compile.log there is no error, but in the screen I got following. Although it compiled geogrid.exe and metgrid.exe, it could not compile the ungrib.exe.(BTW, I compiled successfully WPS with the "NO GRIB2" option)
Any suggestion would be appreciated.
Thanks in advance,
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From mmkamal at sciborg.uwaterloo.ca  Fri Apr 15 18:58:18 2011
From: mmkamal at sciborg.uwaterloo.ca (mmkamal at sciborg.uwaterloo.ca)
Date: Fri, 15 Apr 2011 20:58:18 -0400
Subject: [Wrf-users] Memory fault in  WPP (run_wrfpostandgrads)
Message-ID: <20110415205818.19816riy6f9hqz8c@www.nexusmail.uwaterloo.ca>

Dear All,


I have been trying to use WPP to convert my ARW NetCDF output into  
GRIB format but could not succeed. I have successfully finish  
compiling WPP but while trying to run "run_wrfpostandgrads" I get only  
a single error message "Memory fault" in "wrfpost_d01.000.out".


Has anyone any idea on how to solve this.


Thanks in advance
Kamal





From mmkamal at sciborg.uwaterloo.ca  Fri Apr 15 19:03:28 2011
From: mmkamal at sciborg.uwaterloo.ca (mmkamal at sciborg.uwaterloo.ca)
Date: Fri, 15 Apr 2011 21:03:28 -0400
Subject: [Wrf-users] Memory fault in  WPP (run_wrfpostandgrads)
Message-ID: <20110415210328.47749j02h7le75r4@www.nexusmail.uwaterloo.ca>

Note : Dear Moderator, could you please skip the 1st mail with the  
same Subject and post the 2nd mail in which I have included the log  
file.


Dear All,

I have been trying to use WPP to convert my ARW NetCDF output into  
GRIB format but could not succeed. I have successfully finish  
compiling WPP but while trying to run "run_wrfpostandgrads" I get only  
a single error message "Memory fault" in "wrfpost_d01.000.out".


Has anyone any idea on how to solve this.


Thanks in advance
Kamal





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[mmkamal at thor scripts]$ ./run_wrfpostandgrads
+ export TOP_DIR=/bluejay/kamal/WRF3
+ export DOMAINPATH=/bluejay/kamal/WRF3/DOMAINS
+ dyncore=ARW
+ [ ARW = NMM ]
+ [ ARW = ARW ]
+ export tag=NCAR
+ export startdate=2005082800
+ export fhr=00
+ export lastfhr=00
+ export incrementhr=03
+ export WRF_POSTPROC_HOME=/bluejay/kamal/WRF3/WPPV3
+ export POSTEXEC=/bluejay/kamal/WRF3/WPPV3/exec
+ export SCRIPTS=/bluejay/kamal/WRF3/WPPV3/scripts
+ export WRFPATH=/bluejay/kamal/WRF3/WRFV3
+ cd /bluejay/kamal/WRF3/DOMAINS/postprd
+ ln -sf /bluejay/kamal/WRF3/WPPV3/scripts/cbar.gs .
+ ln -fs /bluejay/kamal/WRF3/WRFV3/run/ETAMPNEW_DATA eta_micro_lookup.dat
+ ln -fs /bluejay/kamal/WRF3/DOMAINS/parm/wrf_cntrl.parm .
+ export tmmark=tm00
+ export MP_SHARED_MEMORY=yes
+ export MP_LABELIO=yes
+ pwd
/bluejay/kamal/WRF3/DOMAINS/postprd
+ ls -x
cbar.gs  eta_micro_lookup.dat  fort.110  fort.14  itag  run_wrfpostandgrads  wrf_cntrl.parm  wrfpost_d01.000.out
+ export NEWDATE=2005082800
+ [ 00 -le 00 ]
+ typeset -Z3 fhr
+ /bluejay/kamal/WRF3/WPPV3/exec/ndate.exe +000 2005082800
+ NEWDATE=2005082800
+ echo 2005082800
+ cut -c1-4
+ YY=2005
+ echo 2005082800
+ cut -c5-6
+ MM=08
+ echo 2005082800
+ cut -c7-8
+ DD=28
+ echo 2005082800
+ cut -c9-10
+ HH=00
+ echo NEWDATE 2005082800
NEWDATE 2005082800
+ echo YY 2005
YY 2005
+ cat
+ > itag 
+ << EOF 
+ rm fort.110 fort.14
+ ln -sf wrf_cntrl.parm fort.14
+ ln -sf griddef.out fort.110
+ /bluejay/kamal/WRF3/WPPV3/exec/wrfpost.exe
+ < itag 
+ > wrfpost_d01.000.out 
+ 2>&1 
+ mv WRFPRS000.tm00 WRFPRS_d01.000
mv: cannot stat `WRFPRS000.tm00': No such file or directory
+ ls -l WRFPRS_d01.000
ls: WRFPRS_d01.000: No such file or directory
+ err1=1
+ test 1 -ne 0
+ echo WRF POST FAILED, EXITTING
WRF POST FAILED, EXITTING
+ exit

From stuefer at gi.alaska.edu  Mon Apr 18 17:30:18 2011
From: stuefer at gi.alaska.edu (Martin)
Date: Mon, 18 Apr 2011 15:30:18 -0800
Subject: [Wrf-users] PhD studentship, Geophysical Institute,
	University of Alaska Fairbanks
Message-ID: <4DACC98A.80309@gi.alaska.edu>

PhD studentship, 'WRF/Chem modeling of volcanic ash and SO2', University 
of Alaska Fairbanks.

Applicants are invited for a PhD position at the University of Alaska 
Fairbanks starting mid 2011 as part of our volcanic ash modeling 
efforts. The project aims at investigating the dispersion of volcanic 
ash in the atmosphere using WRF/Chem. A variety of volcanic eruption 
models are used to initialize WRF/Chem. The models will be verified 
using case studies worldwide with the specific purpose to provide 
improvements for the modeling basis of volcanic ash concentration 
calculations. Methods will include model inter-comparison and testing of 
satellite remote sensing algorithms; operational tools are developed to 
support volcanic ash advisory centers.

The successful candidate will have a strong background in geophysics 
with emphasis in atmospheric sciences and fluid dynamics. Excellent 
programming skills are required.

To apply, please contact professors Martin Stuefer, 
stuefer at gi.alaska.edu, or Peter Webley, pwebley at gi.alaska.edu.


From Alexander.Knyazev at intel.com  Mon Apr 18 11:10:23 2011
From: Alexander.Knyazev at intel.com (Knyazev, Alexander)
Date: Mon, 18 Apr 2011 18:10:23 +0100
Subject: [Wrf-users] NETCDF Installation error
In-Reply-To: <931873.55276.qm@web161213.mail.bf1.yahoo.com>
References: <931873.55276.qm@web161213.mail.bf1.yahoo.com>
Message-ID: <A43BE3D8E247E440AF3477B3CDCB0A690120CAF4C8@irsmsx504.ger.corp.intel.com>

Typically this occurs when you try to compile using -x switch on the system that doesn't support specified instruction set (f.i.  -xSSE3 in Pentium 4). What was exact system configuration and switches used (I believe they are both available in config.log ).

WBR, Alex.
From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Hamed Sharifi
Sent: Saturday, April 16, 2011 7:46 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] NETCDF Installation error

Dear All,
I just installed both ifort and icc but in the installation of NETCDF I got this:

Fatal Error: This program was not built to run on the processor in your system.
The allowed processors are: Intel(R) Core(TM) Duo processors and compatible Intel processors with supplemental Streaming SIMD Extensions 3 (SSSE3) instruction support.

configure:5275: $? = 1
configure:5282: error: in `/home/hamed/netcdf-4.1.1':
configure:5286: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.

Any Idea?
Thanks in advance,
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com<mailto:|hamed319 at yahoo.com>  |
+98-9364024805                            | hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |



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From hamed319 at yahoo.com  Wed Apr 20 09:49:07 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Wed, 20 Apr 2011 08:49:07 -0700 (PDT)
Subject: [Wrf-users] MPI
Message-ID: <889410.16749.qm@web161201.mail.bf1.yahoo.com>

Dear all,
when I just want to use the? mpi option it got me this error:
$mpirun -np 4 ./wrf.exe
mpiexec failed: gethostbyname_ex failed for localhost.localdomain
any suggestion would be appreciated.
Thanks in advance,
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
-------------- next part --------------
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From Michael.Zulauf at iberdrolaren.com  Mon Apr 18 13:35:01 2011
From: Michael.Zulauf at iberdrolaren.com (Zulauf, Michael)
Date: Mon, 18 Apr 2011 12:35:01 -0700
Subject: [Wrf-users] WRF3.3 - syntax error in module_fr_sfire_core?
Message-ID: <B2A259FAA3CF26469FF9A7C7402C49970E7F48FE@POREXUW03.ppmenergy.us>

Hi there, WRF Help and WRF Users. . .

I've found what on _my_ system is being interpreted as a syntax error,
but I don't know if it actually is a syntax error, a compiler directive
that our system can't interpret, a configuration error, a compiler bug,
or what. . .

When attempting to build WRF 3.3, I get the following error:
--------------------- snip
------------------------------------------------------
  /apps/user_apps/OpenMPI-1.2.4_PGI7.0-2/bin/mpif90 -o
module_fr_sfire_core.o -c -fastsse -Mvect=noaltcode
-Mprefetch=distance:8 -Mfprelaxed -Mipa=fast,inline,safe -w -Mfree
-byteswapio -I../dyn_em -I../dyn_nmm -module
/apps/user_apps/WRF_versions/WRFV3.3_rev264/main
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/external/esmf_time_f90
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/main
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/external/io_netcdf
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/external/io_int
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/frame
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/share
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/phys
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/chem
-I/apps/user_apps/WRF_versions/WRFV3.3_rev264/inc
-I/apps/user_apps/netcdf-4.1.1_PGI7.0-2/install_dir/include -r4 -i4
module_fr_sfire_core.f90 ; \
        fi
PGF90-S-0034-Syntax error at or near end of line
(module_fr_sfire_core.f90: 233)
  0 inform,   0 warnings,   1 severes, 0 fatal for nearest
make[3]: [module_fr_sfire_core.o] Error 2 (ignored)
--------------------- snip
------------------------------------------------------

When I examine module_fr_sfire_core.f90, I find that line 233 contains
the following:

!DEC$ ATTRIBUTES FORCEINLINE

That looks to me something like a compiler directive (?), but given that
it starts with the exclamation point, I would think it would be ignored
if the compiler didn't understand it.  Checking with
module_fr_sfire_core.F, it looks like that line is directly inherited
from there.

When I remove that line (or replace it with a standard comment line),
then that file compiles fine using the same compilation command.  I
haven't yet tried to see if this allows me to completely build the
executable properly.

As you can see from the command above, I'm using PGI 7.0-2.  We've got
later versions installed on our system, but I'm currently having some
licensing issues that I've got to resolve.

It's a bit interesting, because I've found that similar lines didn't
cause problems elsewhere in the code base.  For example, the file
module_big_step_utilities_em.f90 contains several instances of the
following, and generated no errors:

!DEC$ loop count(3)

Any thoughts?

Thanks,
Mike

-- 

PLEASE NOTE - NEW E-MAIL ADDRESS:
michael.zulauf at iberdrolaren.com

Mike Zulauf
Meteorologist, Lead Senior
Wind Asset Management 
Iberdrola Renewables
1125 NW Couch, Suite 700
Portland, OR 97209
Office: 503-478-6304  Cell: 503-913-0403



Please be advised that email addresses for Iberdrola Renewables personnel have changed to first.last at iberdrolaREN.com effective Aug. 16, 2010.  Please make a note.  Thank you.

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From andybpenny at hotmail.com  Mon Apr 25 13:23:03 2011
From: andybpenny at hotmail.com (Andrew Penny)
Date: Mon, 25 Apr 2011 12:23:03 -0700
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
Message-ID: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>

We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.

Here are the compilation options we are using for NetCDF 4.1.2:

--------------------------------------------------- 
export CC=mpicc
export CXX=mpicxx

export FC=mpif90
export F77=mpif77
export F90=mpif90

export CPP='icpc -E'
export CXXCPP='icpc -E'

export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'

export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'

export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"

./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
---------------------------------------------------

The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.


Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:

---------------------------------------------------
 LIB_EXTERNAL    = \
                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf   -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
---------------------------------------------------

Here are the error messages that show up during the './compile em_real' process:

---------------------------------------------------
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
fort-control.c:(.text+0x64): undefined reference to `nc_create'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
make[2]: [diffwrf] Error 1 (ignored)

---------------------------------------------------


What are we doing wrong here?

Thanks

Andrew Penny
Research Associate - Meteorology Department
Naval Postgraduate School
Monterey, CA 93943
Phone: (831) 656-3101




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From Rebecca.Selin.Ctr at offutt.af.mil  Mon Apr 25 13:29:56 2011
From: Rebecca.Selin.Ctr at offutt.af.mil (Selin, Rebecca D CTR USAF AFWA 16 WS/WXE)
Date: Mon, 25 Apr 2011 14:29:56 -0500
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
 V4.12
In-Reply-To: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>
References: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>
Message-ID: <201104251915.p3PJEvMr015213@sgbp-fwl-001.offutt.af.mil>

Andrew - Looks like your netcdf library isn't linking in correctly.  In your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf path.

Becky Adams Selin
Atmospheric & Environmental Research, Inc.
AFWA 16th Wx Sqdn  (402) 294-5273


-----Original Message-----
From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Andrew Penny
Sent: Monday, April 25, 2011 2:23 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12

We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.

Here are the compilation options we are using for NetCDF 4.1.2:

---------------------------------------------------
export CC=mpicc
export CXX=mpicxx

export FC=mpif90
export F77=mpif77
export F90=mpif90

export CPP='icpc -E'
export CXXCPP='icpc -E'

export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'

export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'

export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"

./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
---------------------------------------------------


The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.


Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:

---------------------------------------------------
 LIB_EXTERNAL    = \
                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf   -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
---------------------------------------------------

Here are the error messages that show up during the './compile em_real' process:

---------------------------------------------------
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
fort-control.c:(.text+0x64): undefined reference to `nc_create'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
/work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
make[2]: [diffwrf] Error 1 (ignored)

---------------------------------------------------


What are we doing wrong here?

Thanks


Andrew Penny
Research Associate - Meteorology Department Naval Postgraduate School Monterey, CA 93943
Phone: (831) 656-3101





From Rebecca.Selin.Ctr at offutt.af.mil  Mon Apr 25 15:11:23 2011
From: Rebecca.Selin.Ctr at offutt.af.mil (Selin, Rebecca D CTR USAF AFWA 16 WS/WXE)
Date: Mon, 25 Apr 2011 16:11:23 -0500
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
 V4.12
In-Reply-To: <5FD3BF59-B2D9-4D36-A84A-80C3929B8BF7@hotmail.com>
References: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>
	<201104251915.p3PJEvMr015213@sgbp-fwl-001.offutt.af.mil>
	<5FD3BF59-B2D9-4D36-A84A-80C3929B8BF7@hotmail.com>
Message-ID: <201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>

Andrew,

Excellent, glad that's not it!

However, the problem still is that your netcdf library isn't linking in correctly.  I recognize all those undefined references from when my netcdf library didn't link.  I can't find in your compilation options below where you define your netcdf path.  Could you possibly be linking to a 32-bit version instead of 64-bit?

Becky Adams Selin
Atmospheric & Environmental Research, Inc.
AFWA 16th Wx Sqdn  (402) 294-5273


-----Original Message-----
From: Andrew Penny [mailto:andybpenny at hotmail.com]
Sent: Monday, April 25, 2011 4:11 PM
To: Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
Subject: Re: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12

Hi Becky,

The '/path/to/netcdf' is not an actual directory - it was meant to be
simply a placeholder for the NetCDF install location. It is declared
correctly for the LIB_EXTERNAL variable.

Andrew Penny
Research Associate - Meteorology Department
Naval Postgraduate School
Monterey, CA 93943
Phone: (831) 656-3101




On Apr 25, 2011, at 12:29 PM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:

> Andrew - Looks like your netcdf library isn't linking in correctly.  In your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf path.
>
> Becky Adams Selin
> Atmospheric & Environmental Research, Inc.
> AFWA 16th Wx Sqdn  (402) 294-5273
>
>
> -----Original Message-----
> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Andrew Penny
> Sent: Monday, April 25, 2011 2:23 PM
> To: wrf-users at ucar.edu
> Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
>
> We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.
>
> Here are the compilation options we are using for NetCDF 4.1.2:
>
> ---------------------------------------------------
> export CC=mpicc
> export CXX=mpicxx
>
> export FC=mpif90
> export F77=mpif77
> export F90=mpif90
>
> export CPP='icpc -E'
> export CXXCPP='icpc -E'
>
> export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
> export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
> export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'
>
> export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>
> export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"
>
> ./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
> ---------------------------------------------------
>
>
> The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.
>
>
> Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:
>
> ---------------------------------------------------
> LIB_EXTERNAL    = \
>                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf   -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
> ---------------------------------------------------
>
> Here are the error messages that show up during the './compile em_real' process:
>
> ---------------------------------------------------
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
> fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
> fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
> fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
> fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
> fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
> fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
> fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
> fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
> fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
> fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
> fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
> fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
> fort-control.c:(.text+0x64): undefined reference to `nc_create'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
> fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
> fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
> fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
> fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
> fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
> fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
> fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
> fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
> fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
> fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
> fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
> fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
> fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
> fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
> fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
> fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
> fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
> fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
> fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
> fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
> fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
> fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
> fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
> fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
> fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
> fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
> fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
> fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
> fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
> fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
> fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
> fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
> fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
> fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
> fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
> fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
> fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
> fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
> fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
> fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
> fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
> fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
> fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
> fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
> fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
> fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
> fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
> fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
> fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
> fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
> fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
> fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
> fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
> fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
> fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
> fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
> fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
> fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
> fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
> fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
> fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
> fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
> fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
> fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
> fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
> fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
> fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
> fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
> fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
> fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
> fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
> fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
> fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
> fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
> fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
> fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
> fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
> fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
> fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
> fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
> fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
> fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
> fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
> fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
> fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
> fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
> fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
> make[2]: [diffwrf] Error 1 (ignored)
>
> ---------------------------------------------------
>
>
> What are we doing wrong here?
>
> Thanks
>
>
> Andrew Penny
> Research Associate - Meteorology Department Naval Postgraduate School Monterey, CA 93943
> Phone: (831) 656-3101
>
>
>
>
>


From ktyle at atmos.albany.edu  Mon Apr 25 19:55:07 2011
From: ktyle at atmos.albany.edu (Kevin R. Tyle)
Date: Tue, 26 Apr 2011 01:55:07 +0000 (UTC)
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
 V4.12
In-Reply-To: <201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>
References: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>
	<201104251915.p3PJEvMr015213@sgbp-fwl-001.offutt.af.mil>
	<5FD3BF59-B2D9-4D36-A84A-80C3929B8BF7@hotmail.com>
	<201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>
Message-ID: <Pine.LNX.4.64.1104260152140.28872@derecho>

Hi Andrew and Rebecca,

netCDF 4.1.2 now splits off the FORTRAN libraries into libnetcdff.a.  I 
had to manually add "-lnetcdff" into my configure.wrf file in my WRFV3 
build directory in order to eliminate the link errors you are seeing.

Hope this helps . . .

--Kevin

______________________________________________________________________
Kevin Tyle, Systems Administrator               **********************
Dept. of Atmospheric & Environmental Sciences   ktyle at atmos.albany.edu
University at Albany, ES-235                    518-442-4578 (voice)
1400 Washington Avenue                          518-442-5825 (fax)
Albany, NY 12222                                **********************
______________________________________________________________________

On Mon, 25 Apr 2011, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:

> Andrew,
>
> Excellent, glad that's not it!
>
> However, the problem still is that your netcdf library isn't linking in correctly.  I recognize all those undefined references from when my netcdf library didn't link.  I can't find in your compilation options below where you define your netcdf path.  Could you possibly be linking to a 32-bit version instead of 64-bit?
>
> Becky Adams Selin
> Atmospheric & Environmental Research, Inc.
> AFWA 16th Wx Sqdn  (402) 294-5273
>
>
> -----Original Message-----
> From: Andrew Penny [mailto:andybpenny at hotmail.com]
> Sent: Monday, April 25, 2011 4:11 PM
> To: Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
> Subject: Re: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
>
> Hi Becky,
>
> The '/path/to/netcdf' is not an actual directory - it was meant to be
> simply a placeholder for the NetCDF install location. It is declared
> correctly for the LIB_EXTERNAL variable.
>
> Andrew Penny
> Research Associate - Meteorology Department
> Naval Postgraduate School
> Monterey, CA 93943
> Phone: (831) 656-3101
>
>
>
>
> On Apr 25, 2011, at 12:29 PM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:
>
>> Andrew - Looks like your netcdf library isn't linking in correctly.  In your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf path.
>>
>> Becky Adams Selin
>> Atmospheric & Environmental Research, Inc.
>> AFWA 16th Wx Sqdn  (402) 294-5273
>>
>>
>> -----Original Message-----
>> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Andrew Penny
>> Sent: Monday, April 25, 2011 2:23 PM
>> To: wrf-users at ucar.edu
>> Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
>>
>> We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.
>>
>> Here are the compilation options we are using for NetCDF 4.1.2:
>>
>> ---------------------------------------------------
>> export CC=mpicc
>> export CXX=mpicxx
>>
>> export FC=mpif90
>> export F77=mpif77
>> export F90=mpif90
>>
>> export CPP='icpc -E'
>> export CXXCPP='icpc -E'
>>
>> export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>> export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>> export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'
>>
>> export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>> export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>> export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>> export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>> export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>
>> export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"
>>
>> ./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
>> ---------------------------------------------------
>>
>>
>> The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.
>>
>>
>> Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:
>>
>> ---------------------------------------------------
>> LIB_EXTERNAL    = \
>>                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf   -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
>> ---------------------------------------------------
>>
>> Here are the error messages that show up during the './compile em_real' process:
>>
>> ---------------------------------------------------
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
>> fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
>> fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
>> fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
>> fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
>> fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
>> fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
>> fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
>> fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
>> fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
>> fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
>> fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
>> fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
>> fort-control.c:(.text+0x64): undefined reference to `nc_create'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
>> fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
>> fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
>> fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
>> fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
>> fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
>> fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
>> fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
>> fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
>> fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
>> fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
>> fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
>> fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
>> fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
>> fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
>> fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
>> fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
>> fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
>> fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
>> fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
>> fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
>> fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
>> fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
>> fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
>> fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
>> fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
>> fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
>> fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
>> fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
>> fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
>> fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
>> fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
>> fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
>> fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
>> fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
>> fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
>> fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
>> fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
>> fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
>> fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
>> fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
>> fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
>> fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
>> fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
>> fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
>> fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
>> fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
>> fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
>> fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
>> fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
>> fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
>> fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
>> fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
>> fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
>> fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
>> fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
>> fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
>> fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
>> fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
>> fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
>> fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
>> fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
>> fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
>> fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
>> fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
>> fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
>> fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
>> fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
>> fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
>> fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
>> fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
>> fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
>> fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
>> fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
>> fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
>> fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
>> fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
>> fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
>> fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
>> fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
>> fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
>> fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
>> fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
>> fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
>> fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
>> fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
>> fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
>> fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
>> make[2]: [diffwrf] Error 1 (ignored)
>>
>> ---------------------------------------------------
>>
>>
>> What are we doing wrong here?
>>
>> Thanks
>>
>>
>> Andrew Penny
>> Research Associate - Meteorology Department Naval Postgraduate School Monterey, CA 93943
>> Phone: (831) 656-3101
>>
>>
>>
>>
>>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>

From andybpenny at hotmail.com  Mon Apr 25 21:19:19 2011
From: andybpenny at hotmail.com (Andrew Penny)
Date: Mon, 25 Apr 2011 20:19:19 -0700
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
	V4.12
In-Reply-To: <Pine.LNX.4.64.1104260152140.28872@derecho>
References: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>
	<201104251915.p3PJEvMr015213@sgbp-fwl-001.offutt.af.mil>
	<5FD3BF59-B2D9-4D36-A84A-80C3929B8BF7@hotmail.com>
	<201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>
	<Pine.LNX.4.64.1104260152140.28872@derecho>
Message-ID: <BLU0-SMTP1053094A071EF9FA0BF4E6CD3990@phx.gbl>

Hi Kevin,

Where does that addition need to be made? For WRF version 3.3 (at least),
if the "libnetcdff.a" file is present, it gets added automatically to the
paths in the 'LIB_EXTERNAL' variable. Does it need to be added to any
other variable?

Could you send us your NetCDF config script, or the flags/environment
variables that you used?

Thanks!
Andrew

On Apr 25, 2011, at 6:55 PM, Kevin R. Tyle wrote:

> Hi Andrew and Rebecca,
> 
> netCDF 4.1.2 now splits off the FORTRAN libraries into libnetcdff.a.  I 
> had to manually add "-lnetcdff" into my configure.wrf file in my WRFV3 
> build directory in order to eliminate the link errors you are seeing.
> 
> Hope this helps . . .
> 
> --Kevin
> 
> ______________________________________________________________________
> Kevin Tyle, Systems Administrator               **********************
> Dept. of Atmospheric & Environmental Sciences   ktyle at atmos.albany.edu
> University at Albany, ES-235                    518-442-4578 (voice)
> 1400 Washington Avenue                          518-442-5825 (fax)
> Albany, NY 12222                                **********************
> ______________________________________________________________________
> 
> On Mon, 25 Apr 2011, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:
> 
>> Andrew,
>> 
>> Excellent, glad that's not it!
>> 
>> However, the problem still is that your netcdf library isn't linking in correctly.  I recognize all those undefined references from when my netcdf library didn't link.  I can't find in your compilation options below where you define your netcdf path.  Could you possibly be linking to a 32-bit version instead of 64-bit?
>> 
>> Becky Adams Selin
>> Atmospheric & Environmental Research, Inc.
>> AFWA 16th Wx Sqdn  (402) 294-5273
>> 
>> 
>> -----Original Message-----
>> From: Andrew Penny [mailto:andybpenny at hotmail.com]
>> Sent: Monday, April 25, 2011 4:11 PM
>> To: Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
>> Subject: Re: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
>> 
>> Hi Becky,
>> 
>> The '/path/to/netcdf' is not an actual directory - it was meant to be
>> simply a placeholder for the NetCDF install location. It is declared
>> correctly for the LIB_EXTERNAL variable.
>> 
>> Andrew Penny
>> Research Associate - Meteorology Department
>> Naval Postgraduate School
>> Monterey, CA 93943
>> Phone: (831) 656-3101
>> 
>> 
>> 
>> 
>> On Apr 25, 2011, at 12:29 PM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:
>> 
>>> Andrew - Looks like your netcdf library isn't linking in correctly.  In your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf path.
>>> 
>>> Becky Adams Selin
>>> Atmospheric & Environmental Research, Inc.
>>> AFWA 16th Wx Sqdn  (402) 294-5273
>>> 
>>> 
>>> -----Original Message-----
>>> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Andrew Penny
>>> Sent: Monday, April 25, 2011 2:23 PM
>>> To: wrf-users at ucar.edu
>>> Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
>>> 
>>> We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.
>>> 
>>> Here are the compilation options we are using for NetCDF 4.1.2:
>>> 
>>> ---------------------------------------------------
>>> export CC=mpicc
>>> export CXX=mpicxx
>>> 
>>> export FC=mpif90
>>> export F77=mpif77
>>> export F90=mpif90
>>> 
>>> export CPP='icpc -E'
>>> export CXXCPP='icpc -E'
>>> 
>>> export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>> export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>> export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'
>>> 
>>> export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>> export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>> export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>> export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>> export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>> 
>>> export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"
>>> 
>>> ./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
>>> ---------------------------------------------------
>>> 
>>> 
>>> The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.
>>> 
>>> 
>>> Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:
>>> 
>>> ---------------------------------------------------
>>> LIB_EXTERNAL    = \
>>>                     -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf   -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
>>> ---------------------------------------------------
>>> 
>>> Here are the error messages that show up during the './compile em_real' process:
>>> 
>>> ---------------------------------------------------
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
>>> fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
>>> fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
>>> fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
>>> fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
>>> fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
>>> fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
>>> fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
>>> fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
>>> fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
>>> fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
>>> fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
>>> fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
>>> fort-control.c:(.text+0x64): undefined reference to `nc_create'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
>>> fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
>>> fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
>>> fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
>>> fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
>>> fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
>>> fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
>>> fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
>>> fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
>>> fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
>>> fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
>>> fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
>>> fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
>>> fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
>>> fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
>>> fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
>>> fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
>>> fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
>>> fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
>>> fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
>>> fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
>>> fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
>>> fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
>>> fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
>>> fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
>>> fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
>>> fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
>>> fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
>>> fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
>>> fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
>>> fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
>>> fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
>>> fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
>>> fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
>>> fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
>>> fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
>>> fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
>>> fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
>>> fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
>>> fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
>>> fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
>>> fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
>>> fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
>>> fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
>>> fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
>>> fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
>>> fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
>>> fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
>>> fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
>>> fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
>>> fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
>>> fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
>>> fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
>>> fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
>>> fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
>>> fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
>>> fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
>>> fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
>>> fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
>>> fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
>>> fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
>>> fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
>>> fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
>>> fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
>>> fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
>>> fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
>>> fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
>>> fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
>>> fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
>>> fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
>>> fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
>>> fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
>>> fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
>>> fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
>>> fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
>>> fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
>>> fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
>>> fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
>>> fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
>>> fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
>>> fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
>>> fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
>>> fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
>>> fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
>>> fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
>>> fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
>>> fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
>>> fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
>>> make[2]: [diffwrf] Error 1 (ignored)
>>> 
>>> ---------------------------------------------------
>>> 
>>> 
>>> What are we doing wrong here?
>>> 
>>> Thanks
>>> 
>>> 
>>> Andrew Penny
>>> Research Associate - Meteorology Department Naval Postgraduate School Monterey, CA 93943
>>> Phone: (831) 656-3101
>>> 
>>> 
>>> 
>>> 
>>> 
>> 
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>> 
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
> 


From davidstephenbryan at yahoo.com  Tue Apr 26 10:11:39 2011
From: davidstephenbryan at yahoo.com (David Bryan)
Date: Tue, 26 Apr 2011 09:11:39 -0700 (PDT)
Subject: [Wrf-users] storing location info in geo files
Message-ID: <193486.62186.qm@web65901.mail.ac4.yahoo.com>

I'm trying to understand how WRF geo files store location information.
For instance, I recently made a 49x49 geo file and opened it in Panoply.? I 
looked at CLAT (and then CLONG) under the Array tab (numeric values, not 
visualized).? What I found was a 48x48 array of lat-longs.? 

My questions:
1.? Do WRF's geo files store location information (lat-longs) at the midpoint 
between grid points?
2.? This reminded me of the illustration of coarse grid in the "Nesting in WRF" 
document (p. 13 here:? 
http://www.mmm.ucar.edu/wrf/users/tutorial/201101/WRFNesting.pdf).? In the 
illustration, wind speed components, u & v, were stored on the grid point (ie, 
at the perimeter of each "cell" assuming a 5x5 grid), while temperature, T (or 
theta), was stored at the midpoint between grid points (ie, in the center of 
each "cell").? If that illustration is accurate (and my understanding of it 
correct), does that mean that each T value is associated with a CLAT-CLONG 
pair?? Is there one less row and one less column of T data per grid (ie, in my 
case 48x48)?
Thanks!

From J.Kala at murdoch.edu.au  Mon Apr 25 19:16:01 2011
From: J.Kala at murdoch.edu.au (Jatin Kala)
Date: Tue, 26 Apr 2011 09:16:01 +0800
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
	V4.12
References: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com><201104251915.p3PJEvMr015213@sgbp-fwl-001.offutt.af.mil><5FD3BF59-B2D9-4D36-A84A-80C3929B8BF7@hotmail.com>
	<201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>
Message-ID: <BB91CFD22006F54687E86A28D1AAC62C02EA7BCF@PLUTO.ad.murdoch.edu.au>


Hi,
if you still have trouble once you have linked the netcdf lib properly, you may consider using the 4.0.1 version, rather than 4.1.x versions. We had some issues with 4.1.1, which were solved by using 4.0.1. instead. This may or may not apply to you, but worth bearing in mind.
cheers,
jatin 




-----Original Message-----
From: wrf-users-bounces at ucar.edu on behalf of Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
Sent: Tue 4/26/2011 5:11 AM
To: 'Andrew Penny'
Cc: 'wrf-users at ucar.edu'
Subject: Re: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
 
Andrew,

Excellent, glad that's not it!

However, the problem still is that your netcdf library isn't linking in correctly.  I recognize all those undefined references from when my netcdf library didn't link.  I can't find in your compilation options below where you define your netcdf path.  Could you possibly be linking to a 32-bit version instead of 64-bit?

Becky Adams Selin
Atmospheric & Environmental Research, Inc.
AFWA 16th Wx Sqdn  (402) 294-5273


-----Original Message-----
From: Andrew Penny [mailto:andybpenny at hotmail.com]
Sent: Monday, April 25, 2011 4:11 PM
To: Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
Subject: Re: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12

Hi Becky,

The '/path/to/netcdf' is not an actual directory - it was meant to be
simply a placeholder for the NetCDF install location. It is declared
correctly for the LIB_EXTERNAL variable.

Andrew Penny
Research Associate - Meteorology Department
Naval Postgraduate School
Monterey, CA 93943
Phone: (831) 656-3101




On Apr 25, 2011, at 12:29 PM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:

> Andrew - Looks like your netcdf library isn't linking in correctly.  In your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf path.
>
> Becky Adams Selin
> Atmospheric & Environmental Research, Inc.
> AFWA 16th Wx Sqdn  (402) 294-5273
>
>
> -----Original Message-----
> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Andrew Penny
> Sent: Monday, April 25, 2011 2:23 PM
> To: wrf-users at ucar.edu
> Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF V4.12
>
> We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.
>
> Here are the compilation options we are using for NetCDF 4.1.2:
>
> ---------------------------------------------------
> export CC=mpicc
> export CXX=mpicxx
>
> export FC=mpif90
> export F77=mpif77
> export F90=mpif90
>
> export CPP='icpc -E'
> export CXXCPP='icpc -E'
>
> export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
> export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
> export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'
>
> export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
> export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>
> export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"
>
> ./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
> ---------------------------------------------------
>
>
> The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.
>
>
> Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:
>
> ---------------------------------------------------
> LIB_EXTERNAL    = \
>                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf   -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
> ---------------------------------------------------
>
> Here are the error messages that show up during the './compile em_real' process:
>
> ---------------------------------------------------
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
> fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
> fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
> fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
> fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
> fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
> fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
> fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
> fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
> fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
> fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
> fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
> fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
> fort-control.c:(.text+0x64): undefined reference to `nc_create'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
> fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
> fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
> fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
> fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
> fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
> fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
> fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
> fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
> fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
> fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
> fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
> fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
> fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
> fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
> fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
> fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
> fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
> fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
> fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
> fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
> fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
> fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
> fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
> fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
> fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
> fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
> fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
> fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
> fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
> fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
> fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
> fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
> fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
> fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
> fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
> fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
> fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
> fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
> fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
> fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
> fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
> fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
> fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
> fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
> fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
> fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
> fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
> fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
> fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
> fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
> fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
> fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
> fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
> fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
> fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
> fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
> fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
> fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
> fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
> fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
> fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
> fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
> fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
> fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
> fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
> fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
> fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
> fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
> fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
> fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
> fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
> fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
> fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
> fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
> fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
> fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
> fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
> fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
> fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
> fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
> fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
> fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
> fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
> fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
> fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
> fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
> fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
> make[2]: [diffwrf] Error 1 (ignored)
>
> ---------------------------------------------------
>
>
> What are we doing wrong here?
>
> Thanks
>
>
> Andrew Penny
> Research Associate - Meteorology Department Naval Postgraduate School Monterey, CA 93943
> Phone: (831) 656-3101
>
>
>
>
>

_______________________________________________
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From saji at u-aizu.ac.jp  Mon Apr 25 17:45:54 2011
From: saji at u-aizu.ac.jp (Saji Hameed)
Date: Tue, 26 Apr 2011 08:45:54 +0900
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
	V4.12
In-Reply-To: <201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>
References: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>
	<201104251915.p3PJEvMr015213@sgbp-fwl-001.offutt.af.mil>
	<5FD3BF59-B2D9-4D36-A84A-80C3929B8BF7@hotmail.com>
	<201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>
Message-ID: <BANLkTikG+hiw4vTgZgiSfi=GawSOe8Tj+A@mail.gmail.com>

I think it is a problem peculiar to netcdf4. We also had the same problem
and hastily switched back to netcdf 3 to solve the issue. If you google for
this, you may find more info about this problem (there is some discussion on
the pgfortran groups regarding this..)

saji

On Tue, Apr 26, 2011 at 6:11 AM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE <
Rebecca.Selin.Ctr at offutt.af.mil> wrote:

> Andrew,
>
> Excellent, glad that's not it!
>
> However, the problem still is that your netcdf library isn't linking in
> correctly.  I recognize all those undefined references from when my netcdf
> library didn't link.  I can't find in your compilation options below where
> you define your netcdf path.  Could you possibly be linking to a 32-bit
> version instead of 64-bit?
>
> Becky Adams Selin
> Atmospheric & Environmental Research, Inc.
> AFWA 16th Wx Sqdn  (402) 294-5273
>
>
> -----Original Message-----
> From: Andrew Penny [mailto:andybpenny at hotmail.com]
> Sent: Monday, April 25, 2011 4:11 PM
> To: Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
> Subject: Re: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
> V4.12
>
> Hi Becky,
>
> The '/path/to/netcdf' is not an actual directory - it was meant to be
> simply a placeholder for the NetCDF install location. It is declared
> correctly for the LIB_EXTERNAL variable.
>
> Andrew Penny
> Research Associate - Meteorology Department
> Naval Postgraduate School
> Monterey, CA 93943
> Phone: (831) 656-3101
>
>
>
>
> On Apr 25, 2011, at 12:29 PM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
> wrote:
>
> > Andrew - Looks like your netcdf library isn't linking in correctly.  In
> your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf
> path.
> >
> > Becky Adams Selin
> > Atmospheric & Environmental Research, Inc.
> > AFWA 16th Wx Sqdn  (402) 294-5273
> >
> >
> > -----Original Message-----
> > From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
> Behalf Of Andrew Penny
> > Sent: Monday, April 25, 2011 2:23 PM
> > To: wrf-users at ucar.edu
> > Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
> V4.12
> >
> > We are having problems getting the latest version of WRF compiled with
> the latest version of NetCDF.
> >
> > Here are the compilation options we are using for NetCDF 4.1.2:
> >
> > ---------------------------------------------------
> > export CC=mpicc
> > export CXX=mpicxx
> >
> > export FC=mpif90
> > export F77=mpif77
> > export F90=mpif90
> >
> > export CPP='icpc -E'
> > export CXXCPP='icpc -E'
> >
> > export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
> > export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
> > export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include
> -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include
> -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'
> >
> > export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC
> -assume nounderscore'
> > export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC
> -assume nounderscore'
> > export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC
> -assume nounderscore'
> > export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC
> -assume nounderscore'
> > export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
> >
> > export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5
> -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64
> -lz -lm -L/opt/szip/intel/lib -lsz"
> >
> > ./configure --disable-shared --enable-large-file-tests --enable-fortran
> --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4
> --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4
> --enable-utilities --with-libcf --with-zlib=/usr
> --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel
> --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin
> --prefix=/path/to/netcdf
> > ---------------------------------------------------
> >
> >
> > The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN
> compilers.
> >
> >
> > Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file
> for compiling WRF version 3.3:
> >
> > ---------------------------------------------------
> > LIB_EXTERNAL    = \
> >                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf
> -L/path/to/netcdf/lib -lnetcdff -lnetcdf
> -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib
> -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib
> -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c
> -L/usr/lib64 -lcurl
> > ---------------------------------------------------
> >
> > Here are the error messages that show up during the './compile em_real'
> process:
> >
> > ---------------------------------------------------
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_put_att_text_':
> > fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_get_att_text_':
> > fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_put_att_int1_':
> > fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_get_att_int1_':
> > fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_put_att_int2_':
> > fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_get_att_int2_':
> > fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_put_att_int_':
> > fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_get_att_int_':
> > fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_put_att_real_':
> > fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_get_att_real_':
> > fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_put_att_double_':
> > fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function
> `nf_get_att_double_':
> > fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_create_':
> > fort-control.c:(.text+0x64): undefined reference to `nc_create'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf__create_':
> > fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_open_':
> > fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf__open_':
> > fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_set_fill_':
> > fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_redef_':
> > fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_enddef_':
> > fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf__enddef_':
> > fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_sync_':
> > fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_close_':
> > fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_delete_':
> > fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf__create_mp_':
> > fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf__open_mp_':
> > fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_delete_mp_':
> > fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_set_base_pe_':
> > fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_inq_base_pe_':
> > fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_abort_':
> > fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function
> `nf_set_default_format_':
> > fort-control.c:(.text+0x9cf): undefined reference to
> `nc_set_default_format'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function
> `nf_def_dim_':
> > fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function
> `nf_inq_dimid_':
> > fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function
> `nf_inq_dim_':
> > fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function
> `nf_inq_dimname_':
> > fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function
> `nf_inq_dimlen_':
> > fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function
> `nf_rename_dim_':
> > fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_inq_att_':
> > fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_inq_attid_':
> > fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_inq_atttype_':
> > fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_inq_attlen_':
> > fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_inq_attname_':
> > fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_copy_att_':
> > fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_rename_att_':
> > fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function
> `nf_del_att_':
> > fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function
> `nf_inq_':
> > fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function
> `nf_inq_ndims_':
> > fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function
> `nf_inq_nvars_':
> > fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function
> `nf_inq_natts_':
> > fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function
> `nf_inq_unlimdim_':
> > fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function
> `nf_inq_format_':
> > fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_def_var_':
> > fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_inq_var_':
> > fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_inq_varid_':
> > fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_inq_varname_':
> > fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_inq_vartype_':
> > fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_inq_varndims_':
> > fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_inq_vardimid_':
> > fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_inq_varnatts_':
> > fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_rename_var_':
> > fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function
> `nf_copy_var_':
> > fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `c2f_dimids':
> > fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `c2f_chunksizes':
> > fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `f2c_chunksizes':
> > fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `f2c_coords':
> > fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `f2c_counts':
> > fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
> >
> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0):
> more undefined references to `nc_inq_varndims' follow
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `nc_inq_varids_f':
> > fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
> > fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `nc_inq_dimids_f':
> > fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
> > fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `nc_insert_array_compound_f':
> > fort-lib.c:(.text+0x81f): undefined reference to
> `nc_insert_array_compound'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function
> `nc_inq_compound_field_f':
> > fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
> > fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function
> `nf_inq_libvers_':
> > fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function
> `nf_strerror_':
> > fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_put_var_text_':
> > fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_get_var_text_':
> > fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_put_var_int1_':
> > fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_get_var_int1_':
> > fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_put_var_int2_':
> > fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_get_var_int2_':
> > fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_put_var_int_':
> > fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_get_var_int_':
> > fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_put_var_real_':
> > fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_get_var_real_':
> > fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_put_var_double_':
> > fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_get_var_double_':
> > fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_put_var_':
> > fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function
> `nf_get_var_':
> > fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_text_':
> > fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_text_':
> > fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_int1_':
> > fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_int1_':
> > fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_int2_':
> > fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_int2_':
> > fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_int2_':
> > fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_int2_':
> > fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_int_':
> > fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_int_':
> > fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_real_':
> > fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_real_':
> > fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_double_':
> > fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_double_':
> > fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_put_vara_':
> > fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
> > /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function
> `nf_get_vara_':
> > fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
> > make[2]: [diffwrf] Error 1 (ignored)
> >
> > ---------------------------------------------------
> >
> >
> > What are we doing wrong here?
> >
> > Thanks
> >
> >
> > Andrew Penny
> > Research Associate - Meteorology Department Naval Postgraduate School
> Monterey, CA 93943
> > Phone: (831) 656-3101
> >
> >
> >
> >
> >
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 

Saji N Hameed,
ARC-ENV, Center for Advanced Information Science and Technology,
University of Aizu, Tsuruga, Ikki-machi,
Aizuwakamatsu-shi, Fukushima 965-8580,
Japan

Tel: +81242 37-2736
 email: saji at u-aizu.ac.jp
 url: http://www.u-aizu.ac.jp
 bib: http://www.researcherid.com/rid/B-9188-2009
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From ktyle at atmos.albany.edu  Tue Apr 26 16:30:41 2011
From: ktyle at atmos.albany.edu (Kevin R. Tyle)
Date: Tue, 26 Apr 2011 22:30:41 +0000
Subject: [Wrf-users] error compiling (icc & ifort) WRFV3.3 with NetCDF
 V4.12
In-Reply-To: <BLU0-SMTP1053094A071EF9FA0BF4E6CD3990@phx.gbl>
References: <284776D2-1EC0-4B4B-8ADA-0CF171EFF060@hotmail.com>	<201104251915.p3PJEvMr015213@sgbp-fwl-001.offutt.af.mil>	<5FD3BF59-B2D9-4D36-A84A-80C3929B8BF7@hotmail.com>	<201104252056.p3PKuRqb034355@sgbp-fwl-001.offutt.af.mil>	<Pine.LNX.4.64.1104260152140.28872@derecho>
	<BLU0-SMTP1053094A071EF9FA0BF4E6CD3990@phx.gbl>
Message-ID: <4DB74791.90305@atmos.albany.edu>

Hi Andrew,

Here is the diff between the original configure.wrf and the one that 
worked for me.  It is all in the LIB_EXTERNAL line in the makefile:

216c216
<                       -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf 
-lwrfio_nf -L/usr/local/lib  -lnetcdf   
-L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/usr/local/lib64 
-ljasper  -lsz -lhdf5_hl -lhdf5 -lcurl
---
 >                       -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf 
-lwrfio_nf -L/usr/local/lib64 -lnetcdf  -lnetcdff  
-L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/usr/local/lib 
-ljasper  -lsz -lhdf5_hl -lhdf5 -lcurl

Note that I build netcdf4 with support for hdf5 and szip, as well as for 
curl, so that's why you see those four extra libraries at the end.  I 
first modify the $WRF/arch/postamble_new file so these libraries will be 
included when configure is run:

diff postamble_new postamble_new.orig
58c58
< #NOWIN                      CONFIGURE_NETCDF_LIB_PATH 
CONFIGURE_PNETCDF_LIB_PATH CONFIGURE_GRIB2_LIB CONFIGURE_ATMOCN_LIB -lsz 
-lhdf5_hl -lhdf5 -lcurl
---
 > #NOWIN                      CONFIGURE_NETCDF_LIB_PATH 
CONFIGURE_PNETCDF_LIB_PATH CONFIGURE_GRIB2_LIB CONFIGURE_ATMOCN_LIB

My WRF build for dmpar on a single machine is preceded by the building 
of szip2.1, hdf5-1.8.5-patch1, netcdf-4.1.2, and jasper-1.900.1 with the 
intel compilers.  The configure lines I invoke are as follows:

szip: configure --prefix=/usr/local --libdir=/usr/local/lib64
hdf5: configure --enable-cxx --enable-shared --enable-fortran 
--with-szlib=/usr/local --libdir=/usr/local/lib64 --prefix=/usr/local
netcdf4: configure --enable-netcdf-4 --disable-cxx --enable-benchmarks 
--enable-ncgen4 --with-hdf5=/usr/local --with-szlib=/usr/local 
--libdir=/usr/local/lib64
jasper: configure --prefix=/usr/local --libdir=/usr/local/lib64

Meanwhile, for WPS, I modified arch/preamble:

diff preamble preamble.orig
51c51
<                         -L$(NETCDF)/lib CONFIGURE_NETCDFF_LIB 
-lnetcdff -lnetcdf
---
 >                         -L$(NETCDF)/lib CONFIGURE_NETCDFF_LIB -lnetcdf

I also modified arch/configure.defaults:

diff configure.defaults configure.defaults.orig
352c352
< SCC        =    icc
---
 > SCC        =    gcc

I'm not sure if this is really necessary or even foolhardy, but this way 
at least everything is built with the intel compilers.

And, since my NCAR Graphics were built with the Gnu compilers, I had to 
manually change one line in configure.wps after running configure:

24c24
<                 -L/usr/X11R6/lib -lX11
---
 >                 -L/usr/X11R6/lib -lX11 -lgfortran


This is on a 64bit CentOS 5.6 machine with Intel compilers 11.1.

I hope this is helpful!

--Kevin

______________________________________________________________________
Kevin Tyle, Systems Administrator               **********************
Dept. of Atmospheric & Environmental Sciences   ktyle at atmos.albany.edu
University at Albany, ES-235                    518-442-4578 (voice)
1400 Washington Avenue                          518-442-5825 (fax)
Albany, NY 12222                                **********************
______________________________________________________________________



On 04/26/2011 03:19 AM, Andrew Penny wrote:
> Hi Kevin,
>
> Where does that addition need to be made? For WRF version 3.3 (at least),
> if the "libnetcdff.a" file is present, it gets added automatically to the
> paths in the 'LIB_EXTERNAL' variable. Does it need to be added to any
> other variable?
>
> Could you send us your NetCDF config script, or the flags/environment
> variables that you used?
>
> Thanks!
> Andrew
>
> On Apr 25, 2011, at 6:55 PM, Kevin R. Tyle wrote:
>
>> Hi Andrew and Rebecca,
>>
>> netCDF 4.1.2 now splits off the FORTRAN libraries into libnetcdff.a.  I
>> had to manually add "-lnetcdff" into my configure.wrf file in my WRFV3
>> build directory in order to eliminate the link errors you are seeing.
>>
>> Hope this helps . . .
>>
>> --Kevin
>>
>> ______________________________________________________________________
>> Kevin Tyle, Systems Administrator               **********************
>> Dept. of Atmospheric&  Environmental Sciences   ktyle at atmos.albany.edu
>> University at Albany, ES-235                    518-442-4578 (voice)
>> 1400 Washington Avenue                          518-442-5825 (fax)
>> Albany, NY 12222                                **********************
>> ______________________________________________________________________
>>
>> On Mon, 25 Apr 2011, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:
>>
>>> Andrew,
>>>
>>> Excellent, glad that's not it!
>>>
>>> However, the problem still is that your netcdf library isn't linking in correctly.  I recognize all those undefined references from when my netcdf library didn't link.  I can't find in your compilation options below where you define your netcdf path.  Could you possibly be linking to a 32-bit version instead of 64-bit?
>>>
>>> Becky Adams Selin
>>> Atmospheric&  Environmental Research, Inc.
>>> AFWA 16th Wx Sqdn  (402) 294-5273
>>>
>>>
>>> -----Original Message-----
>>> From: Andrew Penny [mailto:andybpenny at hotmail.com]
>>> Sent: Monday, April 25, 2011 4:11 PM
>>> To: Selin, Rebecca D CTR USAF AFWA 16 WS/WXE
>>> Subject: Re: [Wrf-users] error compiling (icc&  ifort) WRFV3.3 with NetCDF V4.12
>>>
>>> Hi Becky,
>>>
>>> The '/path/to/netcdf' is not an actual directory - it was meant to be
>>> simply a placeholder for the NetCDF install location. It is declared
>>> correctly for the LIB_EXTERNAL variable.
>>>
>>> Andrew Penny
>>> Research Associate - Meteorology Department
>>> Naval Postgraduate School
>>> Monterey, CA 93943
>>> Phone: (831) 656-3101
>>>
>>>
>>>
>>>
>>> On Apr 25, 2011, at 12:29 PM, Selin, Rebecca D CTR USAF AFWA 16 WS/WXE wrote:
>>>
>>>> Andrew - Looks like your netcdf library isn't linking in correctly.  In your LIB_EXTERNAL setting, change '-L/path/to/netcdf/lib' to your netcdf path.
>>>>
>>>> Becky Adams Selin
>>>> Atmospheric&  Environmental Research, Inc.
>>>> AFWA 16th Wx Sqdn  (402) 294-5273
>>>>
>>>>
>>>> -----Original Message-----
>>>> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Andrew Penny
>>>> Sent: Monday, April 25, 2011 2:23 PM
>>>> To: wrf-users at ucar.edu
>>>> Subject: [Wrf-users] error compiling (icc&  ifort) WRFV3.3 with NetCDF V4.12
>>>>
>>>> We are having problems getting the latest version of WRF compiled with the latest version of NetCDF.
>>>>
>>>> Here are the compilation options we are using for NetCDF 4.1.2:
>>>>
>>>> ---------------------------------------------------
>>>> export CC=mpicc
>>>> export CXX=mpicxx
>>>>
>>>> export FC=mpif90
>>>> export F77=mpif77
>>>> export F90=mpif90
>>>>
>>>> export CPP='icpc -E'
>>>> export CXXCPP='icpc -E'
>>>>
>>>> export CFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>>> export CXXFLAGS='-O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>>> export CPPFLAGS='-DpgiFortran -I/opt/hdf5/intel/include -I/opt/hdf4/intel/include -I/opt/udunits/intel/include -I/usr/include -I/opt/szip/intel/include -I/usr/mpi/intel/mvapich2-1.6/include'
>>>>
>>>> export FFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export FCFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export FCFLAGS_f90='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export F90FLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC -assume nounderscore'
>>>> export LDFLAGS='-DpgiFortran -O3 -xSSSE3 -ip -no-prec-div -m64 -fPIC'
>>>>
>>>> export LIBS="-L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/hdf4/intel/lib -ldf -L/opt/udunits/intel/lib -ludunits2 -L/usr/lib64 -lz -lm -L/opt/szip/intel/lib -lsz"
>>>>
>>>> ./configure --disable-shared --enable-large-file-tests --enable-fortran --enable-f90 --enable-f77 --disable-netcdf-4 --enable-netcdf4 --enable-parallel --enable-cxx-4 --enable-cxx --enable-hdf4 --enable-utilities --with-libcf --with-zlib=/usr --with-szlib=/opt/szip/intel --with-hdf4=/opt/hdf4/intel --with-hdf5=/opt/hdf5/intel --with-curl-config=/usr/bin --prefix=/path/to/netcdf
>>>> ---------------------------------------------------
>>>>
>>>>
>>>> The mpif77/mpicc/mpif90 binaries are compiled using the Intel C++/FORTRAN compilers.
>>>>
>>>>
>>>> Here is the "LIB_EXTERNAL" variable setting in the 'configure.wrf' file for compiling WRF version 3.3:
>>>>
>>>> ---------------------------------------------------
>>>> LIB_EXTERNAL    = \
>>>>                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/path/to/netcdf/lib -lnetcdff -lnetcdf   -L$(WRF_SRC_ROOT_DIR)/external/io_grib2 -lio_grib2 -L/opt/jasper/intel/lib -ljasper -L/opt/hdf4/intel/lib -ldf -lmfhdf -L/opt/hdf5/intel/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -L/opt/g2clib/intel/lib -lgrib2c -L/usr/lib64 -lcurl
>>>> ---------------------------------------------------
>>>>
>>>> Here are the error messages that show up during the './compile em_real' process:
>>>>
>>>> ---------------------------------------------------
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_text_':
>>>> fort-attio.c:(.text+0x7a): undefined reference to `nc_put_att_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_text_':
>>>> fort-attio.c:(.text+0x18d): undefined reference to `nc_get_att_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int1_':
>>>> fort-attio.c:(.text+0x2af): undefined reference to `nc_put_att_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int1_':
>>>> fort-attio.c:(.text+0x3bd): undefined reference to `nc_get_att_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int2_':
>>>> fort-attio.c:(.text+0x4df): undefined reference to `nc_put_att_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int2_':
>>>> fort-attio.c:(.text+0x5ed): undefined reference to `nc_get_att_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_int_':
>>>> fort-attio.c:(.text+0x70f): undefined reference to `nc_put_att_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_int_':
>>>> fort-attio.c:(.text+0x81d): undefined reference to `nc_get_att_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_real_':
>>>> fort-attio.c:(.text+0x93f): undefined reference to `nc_put_att_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_real_':
>>>> fort-attio.c:(.text+0xa4d): undefined reference to `nc_get_att_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_put_att_double_':
>>>> fort-attio.c:(.text+0xb6f): undefined reference to `nc_put_att_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-attio.o): In function `nf_get_att_double_':
>>>> fort-attio.c:(.text+0xc7d): undefined reference to `nc_get_att_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_create_':
>>>> fort-control.c:(.text+0x64): undefined reference to `nc_create'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_':
>>>> fort-control.c:(.text+0x1a0): undefined reference to `nc__create'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_open_':
>>>> fort-control.c:(.text+0x2b4): undefined reference to `nc_open'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_':
>>>> fort-control.c:(.text+0x3d8): undefined reference to `nc__open'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_fill_':
>>>> fort-control.c:(.text+0x491): undefined reference to `nc_set_fill'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_redef_':
>>>> fort-control.c:(.text+0x4a4): undefined reference to `nc_redef'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_enddef_':
>>>> fort-control.c:(.text+0x4b4): undefined reference to `nc_enddef'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__enddef_':
>>>> fort-control.c:(.text+0x4d0): undefined reference to `nc__enddef'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_sync_':
>>>> fort-control.c:(.text+0x4e4): undefined reference to `nc_sync'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_close_':
>>>> fort-control.c:(.text+0x4f4): undefined reference to `nc_close'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_':
>>>> fort-control.c:(.text+0x55a): undefined reference to `nc_delete'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__create_mp_':
>>>> fort-control.c:(.text+0x68a): undefined reference to `nc__create_mp'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf__open_mp_':
>>>> fort-control.c:(.text+0x7d0): undefined reference to `nc__open_mp'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_delete_mp_':
>>>> fort-control.c:(.text+0x8e3): undefined reference to `nc_delete_mp'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_base_pe_':
>>>> fort-control.c:(.text+0x986): undefined reference to `nc_set_base_pe'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_inq_base_pe_':
>>>> fort-control.c:(.text+0x99f): undefined reference to `nc_inq_base_pe'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_abort_':
>>>> fort-control.c:(.text+0x9b4): undefined reference to `nc_abort'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-control.o): In function `nf_set_default_format_':
>>>> fort-control.c:(.text+0x9cf): undefined reference to `nc_set_default_format'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_def_dim_':
>>>> fort-dim.c:(.text+0x78): undefined reference to `nc_def_dim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimid_':
>>>> fort-dim.c:(.text+0x19b): undefined reference to `nc_inq_dimid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dim_':
>>>> fort-dim.c:(.text+0x2e5): undefined reference to `nc_inq_dim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimname_':
>>>> fort-dim.c:(.text+0x4bb): undefined reference to `nc_inq_dimname'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_inq_dimlen_':
>>>> fort-dim.c:(.text+0x614): undefined reference to `nc_inq_dimlen'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-dim.o): In function `nf_rename_dim_':
>>>> fort-dim.c:(.text+0x695): undefined reference to `nc_rename_dim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_att_':
>>>> fort-genatt.c:(.text+0x87): undefined reference to `nc_inq_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attid_':
>>>> fort-genatt.c:(.text+0x19e): undefined reference to `nc_inq_attid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_atttype_':
>>>> fort-genatt.c:(.text+0x2ae): undefined reference to `nc_inq_atttype'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attlen_':
>>>> fort-genatt.c:(.text+0x3be): undefined reference to `nc_inq_attlen'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_inq_attname_':
>>>> fort-genatt.c:(.text+0x4f7): undefined reference to `nc_inq_attname'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_copy_att_':
>>>> fort-genatt.c:(.text+0x6c8): undefined reference to `nc_copy_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_rename_att_':
>>>> fort-genatt.c:(.text+0x842): undefined reference to `nc_rename_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genatt.o): In function `nf_del_att_':
>>>> fort-genatt.c:(.text+0x9d5): undefined reference to `nc_del_att'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_':
>>>> fort-geninq.c:(.text+0x34): undefined reference to `nc_inq'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_ndims_':
>>>> fort-geninq.c:(.text+0x8f): undefined reference to `nc_inq_ndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_nvars_':
>>>> fort-geninq.c:(.text+0xaf): undefined reference to `nc_inq_nvars'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_natts_':
>>>> fort-geninq.c:(.text+0xcf): undefined reference to `nc_inq_natts'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_unlimdim_':
>>>> fort-geninq.c:(.text+0xf7): undefined reference to `nc_inq_unlimdim'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-geninq.o): In function `nf_inq_format_':
>>>> fort-geninq.c:(.text+0x12f): undefined reference to `nc_inq_format'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_def_var_':
>>>> fort-genvar.c:(.text+0xa0): undefined reference to `nc_def_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_var_':
>>>> fort-genvar.c:(.text+0x217): undefined reference to `nc_inq_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varid_':
>>>> fort-genvar.c:(.text+0x424): undefined reference to `nc_inq_varid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varname_':
>>>> fort-genvar.c:(.text+0x55b): undefined reference to `nc_inq_varname'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vartype_':
>>>> fort-genvar.c:(.text+0x6b4): undefined reference to `nc_inq_vartype'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varndims_':
>>>> fort-genvar.c:(.text+0x6e4): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_vardimid_':
>>>> fort-genvar.c:(.text+0x724): undefined reference to `nc_inq_vardimid'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_inq_varnatts_':
>>>> fort-genvar.c:(.text+0x764): undefined reference to `nc_inq_varnatts'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_rename_var_':
>>>> fort-genvar.c:(.text+0x7e5): undefined reference to `nc_rename_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-genvar.o): In function `nf_copy_var_':
>>>> fort-genvar.c:(.text+0x88a): undefined reference to `nc_copy_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_dimids':
>>>> fort-lib.c:(.text+0x10): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `c2f_chunksizes':
>>>> fort-lib.c:(.text+0x130): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_chunksizes':
>>>> fort-lib.c:(.text+0x1d0): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_coords':
>>>> fort-lib.c:(.text+0x270): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `f2c_counts':
>>>> fort-lib.c:(.text+0x320): undefined reference to `nc_inq_varndims'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o):fort-lib.c:(.text+0x3d0): more undefined references to `nc_inq_varndims' follow
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_varids_f':
>>>> fort-lib.c:(.text+0x47c): undefined reference to `nc_inq_varids'
>>>> fort-lib.c:(.text+0x4b0): undefined reference to `nc_inq_varids'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_dimids_f':
>>>> fort-lib.c:(.text+0x5f6): undefined reference to `nc_inq_dimids'
>>>> fort-lib.c:(.text+0x631): undefined reference to `nc_inq_dimids'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_insert_array_compound_f':
>>>> fort-lib.c:(.text+0x81f): undefined reference to `nc_insert_array_compound'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-lib.o): In function `nc_inq_compound_field_f':
>>>> fort-lib.c:(.text+0x8ac): undefined reference to `nc_inq_compound_field'
>>>> fort-lib.c:(.text+0x8e0): undefined reference to `nc_inq_compound_field'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_inq_libvers_':
>>>> fort-misc.c:(.text+0xa): undefined reference to `nc_inq_libvers'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-misc.o): In function `nf_strerror_':
>>>> fort-misc.c:(.text+0x16e): undefined reference to `nc_strerror'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_text_':
>>>> fort-vario.c:(.text+0x8): undefined reference to `nc_put_var_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_text_':
>>>> fort-vario.c:(.text+0x18): undefined reference to `nc_get_var_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int1_':
>>>> fort-vario.c:(.text+0x28): undefined reference to `nc_put_var_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int1_':
>>>> fort-vario.c:(.text+0x38): undefined reference to `nc_get_var_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int2_':
>>>> fort-vario.c:(.text+0x48): undefined reference to `nc_put_var_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int2_':
>>>> fort-vario.c:(.text+0x58): undefined reference to `nc_get_var_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_int_':
>>>> fort-vario.c:(.text+0x68): undefined reference to `nc_put_var_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_int_':
>>>> fort-vario.c:(.text+0x78): undefined reference to `nc_get_var_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_real_':
>>>> fort-vario.c:(.text+0x88): undefined reference to `nc_put_var_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_real_':
>>>> fort-vario.c:(.text+0x98): undefined reference to `nc_get_var_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_double_':
>>>> fort-vario.c:(.text+0xa8): undefined reference to `nc_put_var_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_double_':
>>>> fort-vario.c:(.text+0xb8): undefined reference to `nc_get_var_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_put_var_':
>>>> fort-vario.c:(.text+0xc8): undefined reference to `nc_put_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-vario.o): In function `nf_get_var_':
>>>> fort-vario.c:(.text+0xd8): undefined reference to `nc_get_var'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_text_':
>>>> fort-varaio.c:(.text+0x5c): undefined reference to `nc_put_vara_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_text_':
>>>> fort-varaio.c:(.text+0xcc): undefined reference to `nc_get_vara_text'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int1_':
>>>> fort-varaio.c:(.text+0x13c): undefined reference to `nc_put_vara_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int1_':
>>>> fort-varaio.c:(.text+0x1ac): undefined reference to `nc_get_vara_schar'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>>>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>>>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int2_':
>>>> fort-varaio.c:(.text+0x21c): undefined reference to `nc_put_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int2_':
>>>> fort-varaio.c:(.text+0x28c): undefined reference to `nc_get_vara_short'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_int_':
>>>> fort-varaio.c:(.text+0x2fc): undefined reference to `nc_put_vara_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_int_':
>>>> fort-varaio.c:(.text+0x36c): undefined reference to `nc_get_vara_int'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_real_':
>>>> fort-varaio.c:(.text+0x3dc): undefined reference to `nc_put_vara_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_real_':
>>>> fort-varaio.c:(.text+0x44c): undefined reference to `nc_get_vara_float'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_double_':
>>>> fort-varaio.c:(.text+0x4bc): undefined reference to `nc_put_vara_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_double_':
>>>> fort-varaio.c:(.text+0x52c): undefined reference to `nc_get_vara_double'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_put_vara_':
>>>> fort-varaio.c:(.text+0x59c): undefined reference to `nc_put_vara'
>>>> /work/sbarve/netcdf/lib/libnetcdff.a(fort-varaio.o): In function `nf_get_vara_':
>>>> fort-varaio.c:(.text+0x60c): undefined reference to `nc_get_vara'
>>>> make[2]: [diffwrf] Error 1 (ignored)
>>>>
>>>> ---------------------------------------------------
>>>>
>>>>
>>>> What are we doing wrong here?
>>>>
>>>> Thanks
>>>>
>>>>
>>>> Andrew Penny
>>>> Research Associate - Meteorology Department Naval Postgraduate School Monterey, CA 93943
>>>> Phone: (831) 656-3101
>>>>
>>>>
>>>>
>>>>
>>>>
>>> _______________________________________________
>>> Wrf-users mailing list
>>> Wrf-users at ucar.edu
>>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>>
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>

From xingang.fan at wku.edu  Wed Apr 27 15:07:11 2011
From: xingang.fan at wku.edu (Fan, Xingang)
Date: Wed, 27 Apr 2011 16:07:11 -0500
Subject: [Wrf-users] RIP4 problem with GHT and SLP
Message-ID: <DA1EF4840ADD594BA2C8C790DA91EB102C82BF0C@EMBXA.ad.wku.edu>

Hi,

Hope someone can help with the RIP plots in the attached PDF file. I had problems with pressure level plotting before.

In the attached plots, slp is shown within the range of 100~110 hPa, which is not right.
Ght at the three pressure levels have problems over land areas obviously.

These were generated by adopting the two example .in files within the RIP4 package. They are attached too. Model information is shown below the plots.

Thanks for any help!

Xingang Fan, Ph.D.
Assistant Professor
Dept. Geography&  Geology
Western Kentucky University
1906 College Heights Blvd, #31066
Bowling Green, KY 42101-1066
Phone: (270)745-5980
Email: xingang.fan at wku.edu<mailto:xingang.fan at wku.edu>

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From Matthew.Foster at noaa.gov  Fri Apr 29 07:28:26 2011
From: Matthew.Foster at noaa.gov (Matt Foster)
Date: Fri, 29 Apr 2011 08:28:26 -0500
Subject: [Wrf-users] Radar DFI: What should it be doing?
Message-ID: <4DBABCFA.2010703@noaa.gov>

I did a build of WRF 3.2.1 (DM, OpenMPI) with Radar DFI enabled.  I 
turned on TDFI and dfi_radar in the namelist file.  When I run the 
simulation (3km, 433x433 grid points), all CPUs are at 100% usage, and 
nothing is appearing to happen.  All we see in the rsl.out files is...

Ntasks in X   1, ntasks in Y   71

We are running on 72 CPUs with IO Quilting enabled.

I let it run for nearly 30 minutes, during which time there was no 
additional output in the rsl.out files, and the CPUs were at 100% for 
the entire time.  I also checked our Infiniband switch, and there was no 
activity.  To me, that indicated that nothing productive was happening.

Is there anyone on here with experience using Radar DFI that might know 
why this is happening?

One suspicion I had was that the build was also done with -DRUC_CLOUD.  
I wonder if that and Radar DFI should not be combined?

Matt

-- 
Do not go where the path may lead; go instead where there is no path and leave a trail.
-- Ralph Waldo Emerson

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From ebeigi3 at tigers.lsu.edu  Fri Apr 29 20:55:44 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Fri, 29 Apr 2011 22:55:44 -0400
Subject: [Wrf-users] installing netcdf
In-Reply-To: <4DB605CE.5090208@ucar.edu>
References: <BANLkTimS5xAeq78UV2XKuVBVN=ctOg4Z3g@mail.gmail.com>
	<4DAC95F2.6000807@ucar.edu>
	<BANLkTinumFD+NAbktFaQAif+LKATZip5hg@mail.gmail.com>
	<BANLkTikjMFUnAo9zm6xUHyuEbRYKAT_EFg@mail.gmail.com>
	<4DB605CE.5090208@ucar.edu>
Message-ID: <BANLkTikwXEUV6uhzD-ok-YksbOsgC-on1w@mail.gmail.com>

Thanks for your previous reply. i compiled the WRF for GRIB2 version
succesfuly, and then I installed three needed libaraies (libpng-zlib, and
jasper), but after compiling WPS, i can not see the ungrib.exe. i tried
different path to theses libaraires in the /.bashrc, but it still doesn't
work. how could i solve this problem?

1- should i install all of libraries as root ?
2- should i install all of the them in the same directory?


Best Regards

Ehsan Beigi






On Mon, Apr 25, 2011 at 7:37 PM, wrfhelp <wrfhelp at ucar.edu> wrote:

>  You need to install these libbraries before you build WPS.
>
> They can be in different places other than where you will build WRF/WPS.
> Only that you need to set correct path to make them accessible when you
> build WPS.
>
> Please see
> http://www.mmm.ucar.edu/wrf/users/docs/user_guide_V3/users_guide_chap3.htm#_How_to_Install
>
>
> On 4/24/2011 2:00 PM, Ehsan Beigi wrote:
>
> Thanks for you previous help. i have problem in compiling wrf for grib2. i
> have netcdf 3.6.2 and i am using icc and ifort compoler and my linux is :
>
>  Linux ehsan 2.6.32-71.24.1.el6.i686 #1 SMP Sat Mar 26 15:30:33 EDT 2011
> i686 i686 i386 GNU/Linux
>
> i would be grateful if you could answer flowing questions:
>
> 1- the jasper, libpng, and zlib are necessary for wrf grib2 or for wps
> grib2, can i link them with netcdf by using this command CC=icc FC=ifort
> ./configure --prefix=/home/ehsan/netcdf --with-zlib=/home/ehsan zlib
> --with-libpng=/home/ehsan/
> libpng --with-jasper=/home/ehsan/jasper
>  ?
>
> 2- should these libraries be installed on the same directory and same
> place?
>
>
> Thanks
>
> Ehsan Beigi
>
>
> On Mon, Apr 18, 2011 at 5:05 PM, Ehsa
> n Beigi <ebeigi3 at tigers.lsu.edu> wrote:
>
>> Thanks
>>
>> Ehsan Beigi
>>
>>
>>
>> On Mon, Apr 18, 2011 at 2:50 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>>
>>>  Please install netCDF v3.6.x instead of V4 and above version. This is
>>> because WRF is not consistent to higher version netCDF.
>>>
>>>
>>> On 4/17/2011 10:52 PM, Ehsan Beigi wrote:
>>>
>>>
>>> Thanks for your previous help. I am installing netcdf.4.1.2 and before
>>> that i installed zlib , libpng and jasper library  which is needed for WPS.
>>> when i want to install netcdf, it asks for curl directory which make me to
>>> install curl. my question is that : would it be possible to use this command
>>> for sharing other installed libraries with netcdf:
>>>
>>> CC=icc FC=ifort ./configure --prefix=/home/ehsan/netcdf
>>> --with-zlib=/home/ehsan zlib --with-libpng=/home/ehsan/libpng
>>> --with-jasper=/home/ehsan/jasper --with curl=/home/ehsan/curl
>>>
>>> Best Regards
>>>
>>> Ehsan
>>> --
>>> *Ehsan Beigi*
>>> *PhD Student*
>>> *Department of Civil and and Environmental Engineering
>>> 2408 Patrick F. Taylor Hall
>>> Louisiana State University
>>> Baton Rouge, LA, 70803*
>>>
>>>
>>>
>>>
>>
>>
>> --
>> *Ehsan Beigi*
>> *PhD Student*
>> *Department of Civil and and Environmental Engineering
>> 2408 Patrick F. Taylor Hall
>> Louisiana State University
>> Baton Rouge, LA, 70803*
>>
>>
>>
>
>
> --
> *Ehsan Beigi*
> *PhD Student*
> *Department of Civil and and Environmental Engineering
> 2408 Patrick F. Taylor Hall
> Louisiana State University
> Baton Rouge, LA, 70803*
>
>
>
>


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From ahsanshah01 at gmail.com  Tue May  3 02:04:25 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Tue, 3 May 2011 13:04:25 +0500
Subject: [Wrf-users] WRF Problem running in Parallel on multiple nodes
	(cluster)
Message-ID: <BANLkTinzKP8HEs_mvuUbkaMCXggoZ=Wcgg@mail.gmail.com>

Hello,

I am able to run WRFV3.2.1 using mpirun on multiple cores of single machine,
but when I want to run it across multiple nodes in cluster using hostlist
then I get error, The compute nodes are mounted with the master node during
boot using NFS. I get following error. Please help.

[root at pmd02 em_real]# mpirun -np 10 -hostfile /home/pmdtest/hostlist
./real.exe
bash: orted: command not found
bash: orted: command not found
--------------------------------------------------------------------------
A daemon (pid 22006) died unexpectedly with status 127 while attempting
to launch so we are aborting.

There may be more information reported by the environment (see above).

This may be because the daemon was unable to find all the needed shared
libraries on the remote node. You may set your LD_LIBRARY_PATH to have the
location of the shared libraries on the remote nodes and this will
automatically be forwarded to the remote nodes.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that the job aborted, but has no info as to the process
that caused that situation.
--------------------------------------------------------------------------
mpirun: clean termination accomplished


-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From bbrashers at Environcorp.com  Tue May  3 10:06:46 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Tue, 3 May 2011 09:06:46 -0700
Subject: [Wrf-users] WRF Problem running in Parallel on multiple
	nodes(cluster)
In-Reply-To: <BANLkTinzKP8HEs_mvuUbkaMCXggoZ=Wcgg@mail.gmail.com>
References: <BANLkTinzKP8HEs_mvuUbkaMCXggoZ=Wcgg@mail.gmail.com>
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF3085206FEB0C2@irvine01.irvine.environ.local>

It looks like OpenMPI is not installed on all your execution machines.
You need to install at least the libs on all machines, or on an
NFS-shared location.  Check the output of "which orted" on the machine
that works.

 

Bart

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Ahsan Ali
Sent: Tuesday, May 03, 2011 1:04 AM
To: users at open-mpi.org
Subject: [Wrf-users] WRF Problem running in Parallel on multiple
nodes(cluster)

 

Hello,

 

I am able to run WRFV3.2.1 using mpirun on multiple cores of single
machine, but when I want to run it across multiple nodes in cluster
using hostlist then I get error, The compute nodes are mounted with the
master node during boot using NFS. I get following error. Please help.

 

[root at pmd02 em_real]# mpirun -np 10 -hostfile /home/pmdtest/hostlist
./real.exe

bash: orted: command not found

bash: orted: command not found

------------------------------------------------------------------------
--

A daemon (pid 22006) died unexpectedly with status 127 while attempting

to launch so we are aborting.

 

There may be more information reported by the environment (see above).

 

This may be because the daemon was unable to find all the needed shared

libraries on the remote node. You may set your LD_LIBRARY_PATH to have
the

location of the shared libraries on the remote nodes and this will

automatically be forwarded to the remote nodes.

------------------------------------------------------------------------
--

------------------------------------------------------------------------
--

mpirun noticed that the job aborted, but has no info as to the process

that caused that situation.

------------------------------------------------------------------------
--

mpirun: clean termination accomplished

 


-- 
Syed Ahsan Ali Bokhari 
Electronic Engineer (EE)


Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714

Cell # +923155145014

 



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From Don.Morton at alaska.edu  Tue May  3 15:17:08 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Tue, 3 May 2011 13:17:08 -0800
Subject: [Wrf-users] dmpar version of geogrid.exe fails on several
	architectures
Message-ID: <BANLkTin34xUhAayYjm4K1xVXN1-Cpzb-uw@mail.gmail.com>

Howdy, I've been trying to track down problems with the dmpar-compiled
geogrid.exe failing, as follows:

ERROR: ERROR: In GEOGRID.TBL, for index file of data at entry 8,
category_max is specified, but category_min is not. Both must be specified.
ERROR: In GEOGRID.TBL, for index file of data at entry ERROR: In
GEOGRID.TBL, for index file of data at entry 99, category_max is specified,
but category_min is not. Both must be specified.
In GEOGRID.TBL, for index file of data at entry 8, category_max is
specified, but category_min is not. Both must be specified.


This happens on a Cray XT5 (kraken), a Cray XE6 (chugach), a Penguin
computing cluster, and a Sun cluster.

In all cases, I am using Portland Group compilers.

In all cases, the serial version runs just fine, from the same directory,
with the same GEOGRID.TBL

This happens using WPS V3.2 and WPS V3.2.1  (I guess I should try WPS V3.3,
too).

When I use WPS V3.1, the dmpar-compiled geogrid.exe works fine, as expected.

The only "hint" I've found so far from googling is a WRF Users Forum entry
where someone found that with the Intel compiler the I_MPI_DEBUG flag, if
set to a certain value, was causing the same problem.  Of course, I"m not
using the Intel compiler, but it's interesting that this case was related to
an MPI implementation with exactly the same problem.  I'm wondering if
others have encountered this.  I'm trying to create some domains that are
too big for serial geogrid.exe

Thanks,

Don Morton



-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://www.arsc.edu/~morton/
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From Don.Morton at alaska.edu  Tue May  3 18:29:55 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Tue, 3 May 2011 16:29:55 -0800
Subject: [Wrf-users] WRF Workshop Abstract Submission shortchanges us on
	word count! :)
Message-ID: <BANLkTim546-5z3H-006p=ykKmmnX6XZ-KA@mail.gmail.com>

Howdy, has anybody else had problems submitting abstracts in the 100-200
word range for the WRF Summer Workshop 2011?

I've got a 173 word abstract I pasted in, and the page won't accept it until
I cut it down closer to 100 words.  Is this something workshop organizers
are aware of?

Thanks,

Don Morton

-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://www.arsc.edu/~morton/
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From Don.Morton at alaska.edu  Tue May  3 18:42:52 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Tue, 3 May 2011 16:42:52 -0800
Subject: [Wrf-users] WRF Workshop Abstract Submission shortchanges us on
	word count! :)
In-Reply-To: <BANLkTim546-5z3H-006p=ykKmmnX6XZ-KA@mail.gmail.com>
References: <BANLkTim546-5z3H-006p=ykKmmnX6XZ-KA@mail.gmail.com>
Message-ID: <BANLkTimSPHhZ-4y_iyS_6+djk2z=MN=hpA@mail.gmail.com>

It looks like what's happening is that it's max'ing out on 999 characters
(and, although I have 1061 not counting spaces, and 1200+ counting spaces, I
only have 173 words).  Is there some way somebody can increase this max
character value to allow for reasonable length abstracts?

Thanks,

Don

On Tue, May 3, 2011 at 4:29 PM, Don Morton <Don.Morton at alaska.edu> wrote:

> Howdy, has anybody else had problems submitting abstracts in the 100-200
> word range for the WRF Summer Workshop 2011?
>
> I've got a 173 word abstract I pasted in, and the page won't accept it
> until I cut it down closer to 100 words.  Is this something workshop
> organizers are aware of?
>
> Thanks,
>
> Don Morton
>
> --
> Voice:  907 450 8679
> Arctic Region Supercomputing Center
> http://weather.arsc.edu/
> http://www.arsc.edu/~morton/
>
>


-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://www.arsc.edu/~morton/
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From J.Kala at murdoch.edu.au  Wed May  4 03:12:21 2011
From: J.Kala at murdoch.edu.au (Jatin Kala)
Date: Wed, 4 May 2011 17:12:21 +0800
Subject: [Wrf-users] WRF-CCSM
Message-ID: <BB91CFD22006F54687E86A28D1AAC62C061B9867@PLUTO.ad.murdoch.edu.au>

Hi there,

 

I am trying to run WRF with CCSM data, and is starting to write some
code to do the conversion from netcdf to "intermediate" format. Turns
out it's a fairly massive job to do from scratch, and I am just
wondering if somebody has already done some of that and is willing to
share their code ?

 

One thing I am yet to figure out is that the Noah LSM needs 6 hourly
soil data (I am pretty sure), but 6 hourly soil data is seldom available
from any GCM! The best I have found is some monthly means.... Does this
mean I have to somehow interpolate monthly means to 6 hourly ? any
suggestions? 

 

Cheers,

 

Jatin 

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From reenb at meteo.psu.edu  Wed May  4 06:32:34 2011
From: reenb at meteo.psu.edu (Brian Reen)
Date: Wed, 04 May 2011 08:32:34 -0400
Subject: [Wrf-users] dmpar version of geogrid.exe fails on
	several	architectures
In-Reply-To: <BANLkTin34xUhAayYjm4K1xVXN1-Cpzb-uw@mail.gmail.com>
References: <BANLkTin34xUhAayYjm4K1xVXN1-Cpzb-uw@mail.gmail.com>
Message-ID: <4DC14762.8060207@meteo.psu.edu>

Don,
I think you'll find that WPSV3.3 will fix this issue.  I was getting 
similar errors in WPSV3.2 due to some uninitialized variables.  If you 
want to use WPSV3.2, you can probably get it working by initializing 
some variables (e.g., set is_category_min and is_category_max to false) 
around line 264 in source_data_module.F.  Looking at the WPSV3.3 version 
should let you know which variables need to be initialized.

Thanks,
Brian Reen

On 5/3/2011 5:17 PM, Don Morton wrote:
> Howdy, I've been trying to track down problems with the dmpar-compiled
> geogrid.exe failing, as follows:
>
> ERROR: ERROR: In GEOGRID.TBL, for index file of data at entry 8,
> category_max is specified, but category_min is not. Both must be specified.
> ERROR: In GEOGRID.TBL, for index file of data at entry ERROR: In
> GEOGRID.TBL, for index file of data at entry 99, category_max is specified,
> but category_min is not. Both must be specified.
> In GEOGRID.TBL, for index file of data at entry 8, category_max is
> specified, but category_min is not. Both must be specified.
>
>
> This happens on a Cray XT5 (kraken), a Cray XE6 (chugach), a Penguin
> computing cluster, and a Sun cluster.
>
> In all cases, I am using Portland Group compilers.
>
> In all cases, the serial version runs just fine, from the same directory,
> with the same GEOGRID.TBL
>
> This happens using WPS V3.2 and WPS V3.2.1  (I guess I should try WPS V3.3,
> too).
>
> When I use WPS V3.1, the dmpar-compiled geogrid.exe works fine, as expected.
>
> The only "hint" I've found so far from googling is a WRF Users Forum entry
> where someone found that with the Intel compiler the I_MPI_DEBUG flag, if
> set to a certain value, was causing the same problem.  Of course, I"m not
> using the Intel compiler, but it's interesting that this case was related to
> an MPI implementation with exactly the same problem.  I'm wondering if
> others have encountered this.  I'm trying to create some domains that are
> too big for serial geogrid.exe
>
> Thanks,
>
> Don Morton
>
>
>
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users


From yinjinfang88 at 163.com  Thu May  5 01:17:21 2011
From: yinjinfang88 at 163.com (yinjinfang)
Date: Thu, 5 May 2011 15:17:21 +0800
Subject: [Wrf-users] errors of compile  all_wrfvar
Message-ID: <201105051517215315473@163.com>

Dear all,

        I'm building WRF-Var V3.2 and 3.3 on a IBM server (AIX 5.3.0.0)
I've got an error when compiling WRF-Var using the commands:

[f01n01:/gpfs1/home/yinjf/src/WRFDA]$ ./configure wrfda
checking for perl5... no
checking for perl... found /usr/bin/perl (perl)
Will use NETCDF in dir: /gpfs1/home/yinjf/local/netcdf
PHDF5 not set in environment. Will configure WRF for use without.
Configuring to use jasper library to build Grib2 I/O...
  $JASPERLIB = /gpfs1/home/yinjf/local/jasper/lib
  $JASPERINC = /gpfs1/home/yinjf/local/jasper/include
------------------------------------------------------------------------
Please select from among the following supported platforms.

   1.  AIX xlf compiler with xlc  (serial)
   2.  AIX xlf compiler with xlc  (smpar)
   3.  AIX xlf compiler with xlc  (dmpar)
   4.  AIX xlf compiler with xlc  (dm+sm)

Enter selection [1-4] : 3

Then,  type  the command $ compile all_wrfvar >& compile.log &

 Here is the error message:


        ( cd var/build; make depend; make -i -r  all_wrfvar )
        (cd /gpfs1/home/wangdh/yinjf/src/WRFDA; tools/registry -DEM_CORE=1  -DNMM_CORE=0 -DNMM_MAX_DIM=2600  -DCOAMPS_CORE=0
 -DDA_CORE=1  -DDFI_RADAR=0  -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=8 -DLWORDSIZE=4  -DNONSTANDARD_SYSTEM_SUBR
-DNATIVE_MASSV  -DBUFR   -DFFTPACK -DNORESHAPE  -DDM_PARALLEL   -DNETCDF    -DGRIB2     -DUSE_ALLOCATABLES  -DGRIB1  -DINTIO
 -DLIMIT_ARGS  -DCONFIG_BUF_LEN=32768  -DMAX_DOMAINS_F=21  -DMAX_HISTORY=25  -DNMM_NEST=0 -DNEW_BDYS Registry/Registry ; cd /
gpfs1/home/wangdh/yinjf/src/WRFDA/var/build )
opening Registry/registry.dimspec
including Registry/registry.dimspec
opening Registry/registry.io_boilerplate
including Registry/registry.io_boilerplate
opening Registry/io_boilerplate_temporary.inc
including Registry/io_boilerplate_temporary.inc
/bin/sh: 107418 Memory fault(coredump)
make: The error code from the last command is 139.


Stop.
make: The error code from the last command is 2.


Stop.

It also generated  a  "core"  file and a  "Registry_tmp.107418 " file.  The detail information of the Registry_tmp.107418 

file  is  following. The file's size  is   352286 kb.

-rw-r--r--   1 wangdh   shiys        352286 May  5 15:05 Registry_tmp.107418 
~
 


2011-05-05 



yinjinfang 
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From drostkier at yahoo.com  Sun May  8 02:24:01 2011
From: drostkier at yahoo.com (Dorita Rostkier-Edelstein)
Date: Sun, 8 May 2011 01:24:01 -0700 (PDT)
Subject: [Wrf-users] auxinput11_interval_s and auxinput11_end_h
Message-ID: <209260.67101.qm@web113111.mail.gq1.yahoo.com>

Dear users,

Could anybody explain to me what these parameters mean and what values should I 
give to them?

Thanks.

Dorita
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From hamed319 at yahoo.com  Tue May 10 01:35:18 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Tue, 10 May 2011 00:35:18 -0700 (PDT)
Subject: [Wrf-users] Flerchinger USEd in NEW version. Iterations= 10
Message-ID: <639645.50426.qm@web161213.mail.bf1.yahoo.com>

Dear All,

I am trying to run a WRF simulation with 3 telescoping domains. At the 
beginning of the run, I started to see the same message been repeated 
again and again:

Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
...

Could you please help me to 
figure out what is the problem here, and what is going wrong with my 
simulation?

Thank in advance.
?
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From jinxiu58 at gmail.com  Tue May 10 06:03:17 2011
From: jinxiu58 at gmail.com (qiancheng jinxiu)
Date: Tue, 10 May 2011 20:03:17 +0800
Subject: [Wrf-users] how to run ideal TC test in WRFV3.3?
Message-ID: <BANLkTikLH528NTaw8Drsc9yOoa=1s8yyUA@mail.gmail.com>

hi ,everyone.
 Now I tried to study to run ideal_tc test in WRF V3.3 in the PC-CLUSTER
The system is linux and compiler is pgi.
When I compiled the WRF code by the choice "dmpar" succefully and run
irun_me_first.csh in ./test/em_tropical_cyclone directory firstly, I submit
the script to run  the ideal.exe
but I can not get the ideal input domain file and ideal run failed.When I
check the error information some of
the rsl.out.files have showed as below.Can any one tell me how to resolve
it? .
   Iterate:
   th,qv,pi =             1             NaN             NaN             NaN
   th,qv,pi =             2             NaN             NaN             NaN
   th,qv,pi =             3             NaN             NaN             NaN
   th,qv,pi =             4             NaN             NaN             NaN
   th,qv,pi =             5             NaN             NaN             NaN
   th,qv,pi =             6             NaN             NaN             NaN
   th,qv,pi =             7             NaN             NaN             NaN
   th,qv,pi =             8             NaN             NaN             NaN
   th,qv,pi =             9             NaN             NaN             NaN
   th,qv,pi =            10             NaN             NaN             NaN
   th,qv,pi =            11             NaN             NaN             NaN
   th,qv,pi =            12             NaN             NaN             NaN
   th,qv,pi =            13             NaN             NaN             NaN
   th,qv,pi =            14             NaN             NaN             NaN
   th,qv,pi =            15             NaN             NaN             NaN
   th,qv,pi =            16             NaN             NaN             NaN
   th,qv,pi =            17             NaN             NaN             NaN
   th,qv,pi =            18             NaN             NaN             NaN
   th,qv,pi =            19             NaN             NaN             NaN
   th,qv,pi =            20             NaN             NaN             NaN
But some rsl.out file seems to be  just interupted.
   vref:
            1    7500.000        3.098607
            2    22500.00        7.257306
            3    37500.00        9.722547
            4    52500.00        11.18232
            5    67500.00        12.01058
            6    82500.00        12.42429
            7    97500.00        12.55589
            8    112500.0        12.48963
            9    127500.0        12.28086
           10    142500.0        11.96697
           11    157500.0        11.57375
           12    172500.0        11.11931
           13    187500.0        10.61656
~
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From Michael.Zulauf at iberdrolaren.com  Tue May 10 17:03:03 2011
From: Michael.Zulauf at iberdrolaren.com (Zulauf, Michael)
Date: Tue, 10 May 2011 16:03:03 -0700
Subject: [Wrf-users] WRF/WPS 3.3 geogrid.exe segfault
Message-ID: <B2A259FAA3CF26469FF9A7C7402C49970ED98E2E@POREXUW03.ppmenergy.us>

Hi all,

I'm having troubles getting a working WRF/WPS 3.3 using PGI compilers.
For my most recent attempt, I used:
	WRF/WPS 3.3
	PGI 10.5
	OpenMPI 1.4.1
	netcdf 3.6.3

I'm building WPS with GRIB2 support:
	jasper 1.900
	libpng 1.4.1

Everything appears to build correctly (unlike my previous attempts with
an older version of PGI), but when I try to run geogrid, I get a
segmentation fault when processing LANDUSEF for domain 1.  There are no
useful clues in the output or the geogrid.log.  This is for a model
setup that is working well with WRF/WPS 3.2.1.

I realize there are a lot of ways that things can go wrong.  Has anybody
gotten WRF/WPS 3.3 working with PGI 10.3 or 10.5?  If so, I was
wondering if somebody could maybe share their configure.wrf and
configure.wps files with me.  If it's not obvious from the configure
files, I'd also like the details of the versions of libraries you're
building against.  I'd like to try and match up my set of libraries and
compiler options (etc) in a similar way, to see if I can get this
working.

Thanks,
Mike

-- 

PLEASE NOTE - NEW E-MAIL ADDRESS:
michael.zulauf at iberdrolaren.com

Mike Zulauf
Meteorologist, Lead Senior
Wind Asset Management 
Iberdrola Renewables
1125 NW Couch, Suite 700
Portland, OR 97209
Office: 503-478-6304  Cell: 503-913-0403



Please be advised that email addresses for Iberdrola Renewables personnel have changed to first.last at iberdrolaREN.com effective Aug. 16, 2010.  Please make a note.  Thank you.

This message is intended for the exclusive attention of the recipient(s) indicated.  Any information contained herein is strictly confidential and privileged.  If you are not the intended recipient, please notify us by return e-mail and delete this message from your computer system. Any unauthorized use, reproduction, alteration, filing or sending of this message and/or any attached files may lead to legal action being taken against the party(ies) responsible for said unauthorized use. Any opinion expressed herein is solely that of the author(s) and does not necessarily represent the opinion of the Company. The sender does not guarantee the integrity, speed or safety of this message, and does not accept responsibility for any possible damage arising from the interception, incorporation of viruses, or any other damage as a result of manipulation.



From davidstephenbryan at yahoo.com  Wed May 11 09:38:41 2011
From: davidstephenbryan at yahoo.com (David Bryan)
Date: Wed, 11 May 2011 08:38:41 -0700 (PDT)
Subject: [Wrf-users] How to specify additional vertical levels
Message-ID: <650574.69313.qm@web65909.mail.ac4.yahoo.com>

Is there a way to run WRF at customized vertical levels?? I don't just mean 
increasing the value of e_vert.? And I'm talking about adding vertical levels 
not contained intermediate file format, so running mod_levs.exe would not be 
useful.? Generally, based on what I've read in the user's guide, it seems like 
the only control one has is to increase e_vert.

Thanks!

From hamed319 at yahoo.com  Wed May 11 09:53:36 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Wed, 11 May 2011 08:53:36 -0700 (PDT)
Subject: [Wrf-users] Flerchinger Error
Message-ID: <327630.1002.qm@web161208.mail.bf1.yahoo.com>

Dear All,

I am trying to run a WRF simulation with 3 telescoping domains. At the beginning of the run, I started to see the same message been repeated again and again:

Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
...

Could you please help me to figure out what is the problem here, and what is going wrong with my simulation?

Thank in advance.


Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com? | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? | hamed_sharifi at aut.ac.ir |
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From agnes.mika at bmtargoss.com  Thu May 12 01:05:44 2011
From: agnes.mika at bmtargoss.com (Agnes Mika)
Date: Thu, 12 May 2011 09:05:44 +0200
Subject: [Wrf-users] How to specify additional vertical levels
In-Reply-To: <650574.69313.qm@web65909.mail.ac4.yahoo.com>
References: <650574.69313.qm@web65909.mail.ac4.yahoo.com>
Message-ID: <20110512070544.GA13141@aggedor.argoss.nl>

Hallo David,

 You have to specify the eta_levels variable in the &domains section
 of your namelist.input. You need to specify explicitely which
 eta_levels you want the model to use. You also have to adjust e_vert
 so that it matches the number of eta_levels you have specified.

Greetings,
Agnes

David Bryan wrote:
> Is there a way to run WRF at customized vertical levels?? I don't just mean 
> increasing the value of e_vert.? And I'm talking about adding vertical levels 
> not contained intermediate file format, so running mod_levs.exe would not be 
> useful.? Generally, based on what I've read in the user's guide, it seems like 
> the only control one has is to increase e_vert.
> 
> Thanks!
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
--
Dr. ?gnes Mika
Advisor, Meteorology and Air Quality

Tel:    +31 (0)527-242299
Fax:    +31 (0)527-242016
Web:    www.bmtargoss.com

BMT ARGOSS
P.O. Box 61, 8325 ZH Vollenhove
Voorsterweg 28, 8316 PT Marknesse
The Netherlands

Confidentiality Notice & Disclaimer

The contents of this e-mail and any attachments are intended for the
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arise as a result of internet transmission, nor accept liability for
statements which are those of the author and clearly not made on
behalf of BMT ARGOSS.



From ahsanshah01 at gmail.com  Wed May 11 21:24:43 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Thu, 12 May 2011 08:24:43 +0500
Subject: [Wrf-users] Flerchinger USEd in NEW version. Iterations= 10
	(Hamed Sharifi)
Message-ID: <BANLkTinY9O-A9DX8m7QaAUCVVT-UVh3Orw@mail.gmail.com>

Dear Hamed,

 Try reducing your time step.



> Date: Tue, 10 May 2011 00:35:18 -0700 (PDT)
> From: Hamed Sharifi <hamed319 at yahoo.com>
> Subject: [Wrf-users] Flerchinger USEd in NEW version. Iterations= 10
> To: "wrf-users at ucar.edu" <wrf-users at ucar.edu>
> Message-ID: <639645.50426.qm at web161213.mail.bf1.yahoo.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Dear All,
>
> I am trying to run a WRF simulation with 3 telescoping domains. At the
> beginning of the run, I started to see the same message been repeated
> again and again:
>
> Flerchinger USEd in NEW version. Iterations= 10
> Flerchinger USEd in NEW version. Iterations= 10
> Flerchinger USEd in NEW version. Iterations= 10
> Flerchinger USEd in NEW version. Iterations= 10
> ...
>
> Could you please help me to
> figure out what is the problem here, and what is going wrong with my
> simulation?
>
> Thank in advance.
> ?
> Hamed Sharifi,
> M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    |
> +98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
>
-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From hamed319 at yahoo.com  Thu May 12 00:24:28 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Wed, 11 May 2011 23:24:28 -0700 (PDT)
Subject: [Wrf-users] Problem :Flerchinger USEd in NEW version & ncview SMOIS
	variable
Message-ID: <843635.61330.qm@web161210.mail.bf1.yahoo.com>

Dear Sir/Maam,
I have a problem with running wrf.exe. I used 3 telescoping grid but it got me this error:
Flerchinger USEd in NEW version. Iterations= 10


I reduced time_step to 5 second and 3 sec; but the error occurred again.
I changed the? "sf_sfclay_physics" to "1,???? 1,???? 1," . Then it went 
right and WRF right properly. But I don't know why the problem is.
Also, when I want to see the SMOIS&SH2O with ncview, it got me this:
"min and max both 0 for variable SMOIS. I can check all data instead of subsampling if that's OK,
or just cancel viewing this variable."
when I click OK, it says:"min and max both 0 for variable SMOIS (checked all data) Setting range to (-1,1)"
Also,
 this message appears for other variables such as 
(SH2O,CLDFRA,QCLOUD,QRAIN,SMCREL,ACGRDFLX,ACHFX,CANWAT,GLW,GRAUPELNC,GRDFLX,HAILNC,...).
Why and when does this problem occur?Could you please give me some help?
Thanks in advance,
?
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From michalg at edan.co.il  Thu May 12 03:01:51 2011
From: michalg at edan.co.il (Michal Gerti)
Date: Thu, 12 May 2011 12:01:51 +0300
Subject: [Wrf-users] Oholo Conference 2011 - Save the Date
Message-ID: <D07DD2EB6EB7664D993A4A9B44E7577603820E7E@IDANMAIL.idan.intra>

Dear Colleague,

 

We are pleased to announce that the 48th Oholo Conference entitled
"Emerging Remote Sensing Techniques and Associated Modeling for Air
Pollution Applications" is scheduled to take place in Eilat, Israel on
November 6-10, 2011. 

 

A website with further information, as well as registration and abstract
submission forms will be activated soon. 

You are welcome to contact the Oholo Conference Secretariat at 
Oholo at iibr.gov.il.

 

On behalf of the Organizing Committee

 

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From patrik.norman at chalmers.se  Thu May 12 04:17:56 2011
From: patrik.norman at chalmers.se (Patrik Norman)
Date: Thu, 12 May 2011 12:17:56 +0200
Subject: [Wrf-users] Flerchinger Error
In-Reply-To: <327630.1002.qm@web161208.mail.bf1.yahoo.com>
References: <327630.1002.qm@web161208.mail.bf1.yahoo.com>
Message-ID: <7DB1A809-F209-40C1-99E7-27F88F2D6A03@chalmers.se>

Hamed,

I think that means that you get numerical instability in your model run. Try setting a lower value for timestep.

//Patrik

--------------------------------------------------
Patrik Norman
Optical Remote Sensing Group
Department of Earth and Space Sciences
Chalmers University of Technology
H?rsalsv?gen 11, Floor 4
SE-412 96 G?teborg, Sweden
Phone: +46 31 772 5655
Fax: +46 31 772 1884
--------------------------------------------------



11 maj 2011 kl. 17.53 skrev Hamed Sharifi:

Dear All,
I am trying to run a WRF simulation with 3 telescoping domains. At the beginning of the run, I started to see the same message been repeated again and again:

Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
Flerchinger USEd in NEW version. Iterations= 10
...

Could you please help me to figure out what is the problem here, and what is going wrong with my simulation?

Thank in advance.


Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com  |
+98-9364024805                            | hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |
_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users

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From drostkier at yahoo.com  Thu May 12 17:18:34 2011
From: drostkier at yahoo.com (Dorita Rostkier-Edelstein)
Date: Thu, 12 May 2011 16:18:34 -0700 (PDT)
Subject: [Wrf-users] 48th Oholo Conference: "Emerging Remote Sensing
	Techniques and Associated Modeling for Air Pollution Applications"
Message-ID: <210917.78402.qm@web113103.mail.gq1.yahoo.com>

Dear WRF users,

Please, see attached an announcement to a conference that I am co-organizing.

Hope to see you.

Dorita
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From aruny at iitk.ac.in  Wed May 18 03:31:12 2011
From: aruny at iitk.ac.in (Arun)
Date: Wed, 18 May 2011 15:01:12 +0530
Subject: [Wrf-users] WRF 3.2.1 compilation errors
In-Reply-To: <4D0A11E2.4040501@meteo.bg>
References: <4D0A11E2.4040501@meteo.bg>
Message-ID: <4DD391E0.1080709@iitk.ac.in>

Hi everyone,
  I am trying to compile WRF on an intel machine but keep getting error 
related to module_initialize_real.f90 file. I'm attaching my log file 
along with this mail. Please see if someone can help me. Googling didn't 
help.

Regards,
Arun
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From ebeigi3 at tigers.lsu.edu  Tue May 17 11:29:50 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Tue, 17 May 2011 13:29:50 -0400
Subject: [Wrf-users] Error when make plotgrids.exe and plotfmt.exe
Message-ID: <BANLkTim_TvJ_=RSjf95jZ2efO7x7HCKGmg@mail.gmail.com>

Dear Sir/Madam,
I have linux redhat 6 (RHEL6) and ICC and IFORT. I am trying to compile WPS
with NCL 5.2.1 , and I installed the NCL correctly, but i can not see
plotgrid.exe and plotfmt.exe when i compile wps. i attached the
compile_wps.log for you consideration

i really appreciate your help.

Best Regards

Ehsan Beigi


On Mon, May 16, 2011 at 3:06 PM, Ehsan Beigi <ebeigi3 at tigers.lsu.edu> wrote:

> thanks for you help. i found the prblem, it was related to the time. is it
> NCL necessary for WRF?
>
> Best Regards
>
> Ehsan Beigi
>
>
>
> On Mon, May 16, 2011 at 2:13 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>
>>  Did you see ungrib.exe . metgrid.exe, geogrid.exe in your WPS directory?
>> I found some errors in your log file, but those are related to ncarg
>> graphic. So I suppose they shouldn't affect your ungrib.exe.
>>
>> However, I am not sure whether you have built WPS successfully because
>> your log file is incomplete.
>>
>> The error message you got seemed like that, you try to ungrib GRIB2 format
>> data, but your WPS doesn't support GRIB2. I am suspicious that you didn't
>> build WPS successfully ( at least with GRIB2 support).
>>
>> Please look at
>> http://www.mmm.ucar.edu/wrf/users/docs/user_guide_V3/users_guide_chap3.htm#_How_to_Install
>>
>> This page showed how to install all necessary libraries for WPS and how to
>> build WPS.
>>
>>
>>
>> On 5/13/2011 7:38 PM, Ehsan Beigi wrote:
>>
>>
>> Thanks for your previous help. i have this error when i am trying to run
>> the example of WPS file in your website:
>> http://www.mmm.ucar.edu/wrf/users/download/get_source2.html , and on the WRF
>> Preprocessing System test data<http://www.mmm.ucar.edu/wrf/src/data/avn_data.tar.gz>.  i have WRFV3.2.1,  and icc and ifort, i installed zlib, libpng and
>> jasper, but i can not run this example, i have this error :
>> ERROR: Grib2 file or date problem, stopping in edition_num.
>>
>> i attached the compile_wps.log
>>
>> I really appreciate  your help.
>>
>> Best Regards,
>>
>> --
>> *Ehsan Beigi*
>> *PhD Student*
>> *Department of Civil and and Environmental Engineering
>> 2408 Patrick F. Taylor Hall
>> Louisiana State University
>> Baton Rouge, LA, 70803*
>>
>>
>>
>>
>
>
> --
> *Ehsan Beigi*
> *PhD Student*
> *Department of Civil and and Environmental Engineering
> 2408 Patrick F. Taylor Hall
> Louisiana State University
> Baton Rouge, LA, 70803*
>
>
>


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From guillermo.fernandez at meteogalicia.es  Fri May 13 12:17:31 2011
From: guillermo.fernandez at meteogalicia.es (=?ISO-8859-15?Q?Guillermo_Fern=E1ndez?=)
Date: Fri, 13 May 2011 20:17:31 +0200
Subject: [Wrf-users] WRF with NetCDF4 and HDF5 compression enable
Message-ID: <4DCD75BB.2070203@meteogalicia.es>

Dear All,

We are considering to use WRF with NetCDF4 and HDF5 compression output enabled. Unfortunately the only information we have found so far is this link from 2008:

www.unidata.ucar.edu/software/netcdf/papers/AGU_2008_poster.pdf

1.- Has someone used NetCDF4 and HDF5 compression in WRF?
2.- Are utilities like postprocessor (WPP) ready for it?

Thank you in advance,

Guillermo


-- 
MeteoGalicia
     Guillermo Fern?ndez Garc?a
     Dpto. Predici?n Num?rica e Investigaci?n
  	R?a Roma, 6
15.707 Santiago de Compostela
	Tel: +34 981 957 462
Fax: +34 981 957 466
guillermo.fernandez at meteogalicia.es
<mailto:guillermo.fernandez at meteogalicia.es>
www.meteogalicia.es <http://www.meteogalicia.es/>


From hamed319 at yahoo.com  Sat May 14 05:10:58 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Sat, 14 May 2011 04:10:58 -0700 (PDT)
Subject: [Wrf-users] KF_ETA_PARA error
Message-ID: <587815.45575.qm@web161202.mail.bf1.yahoo.com>

Dear Sir/Ma'am,
I have a problem with running wrf.exe. I used 3 telescoping grid but it got first me this error:
Flerchinger USEd in NEW version. Iterations= 10

I reduced time_step to 5 second and 3 sec; but the error occurred again.
I changed the "sf_sfclay_physics" to "1, 1, 1," . Then it went right and WRF right properly. But another error hit me:

WOULD GO OFF TOP: KF_ETA_PARA I,J,DPTHMX,DPMIN 8
78 NaN 5000.000

Also, when I want to see the SMOIS&SH2O with ncview, it got me this:
"min and max both 0 for variable SMOIS. I can check all data instead of subsampling if that's OK,
or just cancel viewing this variable."
when I click OK, it says:"min and max both 0 for variable SMOIS (checked all data) Setting range to (-1,1)"
Also,
 this message appears for other variables such as 
(SH2O,CLDFRA,QCLOUD,QRAIN,SMCREL,ACGRDFLX,ACHFX,CANWAT,GLW,GRAUPELNC,GRDFLX,HAILNC,...).
Why and when does this problem occur?
Could you please give me some help?
Thanks in advance,

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran |hamed319 at yahoo.com |
+98-9364024805 | hamed_sharifi at aut.ac.ir |
?
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From nilima.2002 at gmail.com  Wed May 18 04:54:04 2011
From: nilima.2002 at gmail.com (nilima natoo)
Date: Wed, 18 May 2011 12:54:04 +0200
Subject: [Wrf-users] segmentation fault with grib2 data
Message-ID: <BANLkTi=bRdC80zvaWAizokZngMrqfOqxig@mail.gmail.com>

Dear wrf_users,

While using ./ungrib.exe I came across with following error message for
grib2 type data:
[nma at k6 WPS]$ ./ungrib.exe
  *** Starting program ungrib.exe ***
Start_date =  1979-01-01_00:00:00 ,      End_date = 1979-01-01_00:00:00
output format is WPS
Path to intermediate files is ./
 ungrib - grib edition num           2
Segmentation fault


This kind of segmentation problem does not occur with grib1 type data.
In addition to that there is no 'Error' message while compilation and all
executables are created.

This is how ungrib specific portion of my namelist.wps looks like:
&share
 wrf_core = 'ARW',
 max_dom = 1,
 start_date = '1979-01-01_00:00:00',
 end_date   = '1979-01-01_00:00:00',
 interval_seconds = 21600
 io_form_geogrid = 2,

&ungrib
 out_format = 'WPS',
 prefix = 'FILE',


I am using NCEP-CFSR grib2 data and Vtable.CFSR looks like this

GRIB1| Level| From |  To  | metgrid  | metgrid |
metgrid
|GRIB2|GRIB2|GRIB2|GRIB2|
Param| Type |Level1|Level2| Name     | Units   |
Description
|Discp|Catgy|Param|Level|
-----+------+------+------+----------+---------+-----------------------------------------+------------------------------------------------+
  11 | 100   |   *    |         | TT                 | K           |
Temperature                                                   |  0  |  0  |
0  | 100 |
  33 | 100   |   *    |         | UU                | m s-1     |
U                                                                   |  0  |
2  |  2  | 100   |
  34 | 100   |   *    |         | VV                | m s-1     |
V                                                                   |  0  |
2  |  3  | 100   |
  52 | 100   |   *    |         | RH                | %          | Relative
Humidity                                            |  0  |  1  |  1  | 100
  |
   7  | 100   |   *    |         | HGT              | m          |
Height                                                             |  0  |
3  |  5  | 100   |
  11 | 105   |   2   |         | TT                 | K           |
Temperature       at 2 m                                   |  0  |  0  |  0
| 103   |
  51 | 105   |   2   |         | SPECHUMD  | kg kg-1  | Specific Humidity at
2 m                                 |  0  |  1  |  0  | 103   |
  33 | 105   |  10  |         | UU                | m s-1      |
U                 at 10 m                                      |  0  |  2
|  2  | 103   |
  34 | 105   |  10  |         | VV                | m s-1      |
V                 at 10 m                                      |  0  |  2
|  3  | 103   |
   1  |   1     |   0   |         | PSFC           | Pa          | Surface
Pressure                                            |  0  |  3  |  0  |   1
   |
   2  | 102   |   0   |         | PMSL           | Pa          | Sea-level
Pressure                                         |  0  |  3  |  1  | 101   |
 144 | 112  |   0    |  10  | SM000010    | fraction   | Soil Moist 0-10 cm
below grn layer (Up)          |  2 |  0  | 192 | 106  |
 144 | 112  |  10   |  40  | SM010040    | fraction    | Soil Moist 10-40 cm
below grn layer               |  2  |  0  | 192 | 106 |
 144 | 112  |  40   | 100 | SM040100    | fraction    | Soil Moist 40-100 cm
below grn layer             |  2  |  0  | 192 | 106 |
 144 | 112  | 100  | 200 | SM100200    | fraction    | Soil Moist 100-200 cm
below gr layer            |  2  |  0  | 192 | 106 |
  11 | 112  |   0    |  10   | ST000010    | K              | T 0-10 cm
below ground layer (Upper)          |  0  |  0  |  0  | 106   |
  11 | 112  |  10   |  40   | ST010040     | K             | T 10-40 cm
below ground layer (Upper)         |  0  |  0  |  0  | 106   |
  11 | 112  |  40   | 100  | ST040100     | K             | T 40-100 cm
below ground layer (Upper)       |  0  |  0  |  0  | 106   |
  11 | 112  | 100  | 200  | ST100200     | K             | T 100-200 cm
below ground layer (Bottom)   |  0  |  0  |  0  | 106   |
  91 |   1    |   0    |         | SEAICE         | proprtn     | Ice
flag                                                         | 10  |  2  |
0  |   1    |
  81 |   1    |   0    |         | LANDSEA      | proprtn    | Land/Sea flag
(1=land, 0 or 2=sea)               |  2  |  0  |  0  |   1     |
   7  |   1    |   0    |         | SOILHGT       | m            | Terrain
field of source analysis                       |  0  |  3  |  5  |   1     |
  11 |   1    |   0    |         | SKINTEMP     | K             | Skin
temperature (can use for SST also)        |  0  |  0  |  0  |   1     |
  65 |   1    |   0    |         | SNOW           | kg m-2    | Water
equivalent snow depth                         |  0  |  1  | 13  |   1    |
 224|   1    |   0    |         | SOILCAT        | Tab4.213| Dominant soil
type cat.                                  |  2  |  3  |  0  |   1     |
 225|   1    |   0    |         | VEGCAT        | Tab4.212| Dominant land
use cat.                                  |  2  |  0  | 198 |   1   |
-----+------+------+------+----------+---------+-----------------------------------------+-------------------------------------------------+




In case you have already faced this problem or have some idea to solve it,
kindly help me with some hint.

Thanks.
with regards, nilima
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From rdelgado at dim.uchile.cl  Wed May 18 08:47:48 2011
From: rdelgado at dim.uchile.cl (=?ISO-8859-1?Q?Rodrigo_Delgado_Urz=FAa?=)
Date: Wed, 18 May 2011 10:47:48 -0400
Subject: [Wrf-users] WRF NMM latlon mismatch error
Message-ID: <4DD3DC14.7010000@dim.uchile.cl>

Dear All,

I am trying to run a WRF (version 3.2.1) NMM simulation with 3 
telescoping domains. WPS stage (geogrid, ungrib and metgrid runs are OK; 
plotgrids gmeta file shows an apparently correct domain configuration) 
and real_nmm runs without problems (wrfinput* and wrfbdy* files are in 
place).

When I try to run wrf.exe the following message appears:

   SOME MATCHING TEST i_parent_start, j_parent_start          36          84
  WRFSI LAT      COMPUTED LAT
    -41.19375      -35.02003
  WRFSI LON      COMPUTED LON
    -76.28421      -75.00367
  CHECK WRFSI CONFIGURATION AND INPUT HIGH RESOLUTION TOPOGRAPHY AND/OR 
GRID RATIO
  -------------- FATAL CALLED ---------------
  FATAL CALLED FROM FILE:  NMM_NEST_UTILS1.b  LINE:    2169
  LATLON MISMATCH: ERROR READING static FILE FOR THE NEST
  -------------------------------------------

The domain dimensions set in namelist.input file are exactly the same as 
configured in previous stages. I have met_nmm* and geo_nmm* files in place.

What I am doing wrong?

Thanks

Rodrigo



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From s.hawkins at ed.ac.uk  Wed May 18 04:38:11 2011
From: s.hawkins at ed.ac.uk (Sam Hawkins)
Date: Wed, 18 May 2011 11:38:11 +0100
Subject: [Wrf-users] Understanding WRF surface layer schemes
Message-ID: <4DD3A193.7050604@ed.ac.uk>

Dear WRF users

I'm looking for any documentation on how WRF calculates surface wind
speeds and surface momentum flux over water, (in particular using the
Eta scheme).

If surface wind speed and friction velocity depend on the roughness
length, but the roughness length itself depends on the friction
velocity, where do you start? I've read the surface fluxes are computed
'by an iterative method', but haven't found any description of it.

Thanks,

Sam.

-- 
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.


From eric.kemp at nasa.gov  Wed May 18 09:58:25 2011
From: eric.kemp at nasa.gov (Kemp, Eric M. (GSFC-610.3)[NORTHROP GRUMMAN])
Date: Wed, 18 May 2011 10:58:25 -0500
Subject: [Wrf-users] WRF 3.2.1 compilation errors
In-Reply-To: <4DD391E0.1080709@iitk.ac.in>
Message-ID: <C9F964E1.2944%Eric.Kemp@nasa.gov>


The problem is the "intent(in)" and "intent(out)" attributes with the
pointers in module_initialize_real.F.  Technically it is illegal in Fortran
90 to use these attributes with pointer arguments (Fortran 2003 allows it).
Most Fortran compilers accept it, but the gfortran compiler is not one of
them.

The fix is to modify module_initialize_real.F and remove the attributes,
then recompile. 

-Eric


On 5/18/11 5:31 AM, "Arun" <aruny at iitk.ac.in> wrote:

> Hi everyone,
>   I am trying to compile WRF on an intel machine but keep getting error
> related to module_initialize_real.f90 file. I'm attaching my log file
> along with this mail. Please see if someone can help me. Googling didn't
> help.
> 
> Regards,
> Arun

--------------------------------------------------------------------
Eric M. Kemp                   Northrop Grumman Corporation
Meteorologist                  Information Systems
Civil Enterprise Solutions     Civil Systems Division
                   
                               Goddard Space Flight Center
                               Mailstop 610.3
                               Greenbelt, MD 20771
                               Telephone   301-286-9768
                               Fax         301-286-1775
                               E-mail:     eric.kemp at nasa.gov
                               E-mail:     eric.kemp at ngc.com
--------------------------------------------------------------------




From FLiu at azmag.gov  Wed May 18 09:52:25 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Wed, 18 May 2011 15:52:25 +0000
Subject: [Wrf-users] Error when make plotgrids.exe and plotfmt.exe
In-Reply-To: <BANLkTim_TvJ_=RSjf95jZ2efO7x7HCKGmg@mail.gmail.com>
References: <BANLkTim_TvJ_=RSjf95jZ2efO7x7HCKGmg@mail.gmail.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C256ACAC7@mag9006>

Could you please post your configure.wps?  And then I will check that for you. Thanks.
Feng

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Ehsan Beigi
Sent: Tuesday, May 17, 2011 10:30 AM
To: wrfhelp
Cc: wrf-users at ucar.edu
Subject: [Wrf-users] Error when make plotgrids.exe and plotfmt.exe

Dear Sir/Madam,
I have linux redhat 6 (RHEL6) and ICC and IFORT. I am trying to compile WPS with NCL 5.2.1 , and I installed the NCL correctly, but i can not see plotgrid.exe and plotfmt.exe when i compile wps. i attached the compile_wps.log for you consideration

i really appreciate your help.

Best Regards

Ehsan Beigi

On Mon, May 16, 2011 at 3:06 PM, Ehsan Beigi <ebeigi3 at tigers.lsu.edu<mailto:ebeigi3 at tigers.lsu.edu>> wrote:
thanks for you help. i found the prblem, it was related to the time. is it NCL necessary for WRF?

Best Regards

Ehsan Beigi


On Mon, May 16, 2011 at 2:13 PM, wrfhelp <wrfhelp at ucar.edu<mailto:wrfhelp at ucar.edu>> wrote:
Did you see ungrib.exe . metgrid.exe, geogrid.exe in your WPS directory?
I found some errors in your log file, but those are related to ncarg graphic. So I suppose they shouldn't affect your ungrib.exe.

However, I am not sure whether you have built WPS successfully because your log file is incomplete.

The error message you got seemed like that, you try to ungrib GRIB2 format data, but your WPS doesn't support GRIB2. I am suspicious that you didn't build WPS successfully ( at least with GRIB2 support).

Please look at http://www.mmm.ucar.edu/wrf/users/docs/user_guide_V3/users_guide_chap3.htm#_How_to_Install

This page showed how to install all necessary libraries for WPS and how to build WPS.



On 5/13/2011 7:38 PM, Ehsan Beigi wrote:

Thanks for your previous help. i have this error when i am trying to run the example of WPS file in your website: http://www.mmm.ucar.edu/wrf/users/download/get_source2.html , and on the WRF Preprocessing System test data<http://www.mmm.ucar.edu/wrf/src/data/avn_data.tar.gz> .  i have WRFV3.2.1,  and icc and ifort, i installed zlib, libpng and jasper, but i can not run this example, i have this error :
ERROR: Grib2 file or date problem, stopping in edition_num.

i attached the compile_wps.log

I really appreciate  your help.

Best Regards,

--
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803





--
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803




--
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803

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From maemarcus at gmail.com  Wed May 18 16:03:54 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Thu, 19 May 2011 02:03:54 +0400
Subject: [Wrf-users] WRF 3.2.1 compilation errors
In-Reply-To: <C9F964E1.2944%Eric.Kemp@nasa.gov>
References: <4DD391E0.1080709@iitk.ac.in>
	<C9F964E1.2944%Eric.Kemp@nasa.gov>
Message-ID: <BANLkTinSCpa6DFHxy3Lq0fWO5pCiKoKQcQ@mail.gmail.com>

Arun,

Could you check how old is your gfortran version and update it if it
is too old? I've just checked gfortran 4.5 handle pointers marked
intent(in) without any problems.

- D.

2011/5/18 Kemp, Eric M. (GSFC-610.3)[NORTHROP GRUMMAN] <eric.kemp at nasa.gov>:
>
> The problem is the "intent(in)" and "intent(out)" attributes with the
> pointers in module_initialize_real.F. ?Technically it is illegal in Fortran
> 90 to use these attributes with pointer arguments (Fortran 2003 allows it).
> Most Fortran compilers accept it, but the gfortran compiler is not one of
> them.
>
> The fix is to modify module_initialize_real.F and remove the attributes,
> then recompile.
>
> -Eric
>
>
> On 5/18/11 5:31 AM, "Arun" <aruny at iitk.ac.in> wrote:
>
>> Hi everyone,
>> ? I am trying to compile WRF on an intel machine but keep getting error
>> related to module_initialize_real.f90 file. I'm attaching my log file
>> along with this mail. Please see if someone can help me. Googling didn't
>> help.
>>
>> Regards,
>> Arun
>
> --------------------------------------------------------------------
> Eric M. Kemp ? ? ? ? ? ? ? ? ? Northrop Grumman Corporation
> Meteorologist ? ? ? ? ? ? ? ? ?Information Systems
> Civil Enterprise Solutions ? ? Civil Systems Division
>
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Goddard Space Flight Center
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Mailstop 610.3
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Greenbelt, MD 20771
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Telephone ? 301-286-9768
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Fax ? ? ? ? 301-286-1775
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E-mail: ? ? eric.kemp at nasa.gov
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E-mail: ? ? eric.kemp at ngc.com
> --------------------------------------------------------------------
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>

From aruny at iitk.ac.in  Thu May 19 03:40:46 2011
From: aruny at iitk.ac.in (Arun)
Date: Thu, 19 May 2011 15:10:46 +0530
Subject: [Wrf-users] WRF 3.2.1 compilation errors
In-Reply-To: <BANLkTinSCpa6DFHxy3Lq0fWO5pCiKoKQcQ@mail.gmail.com>
References: <4DD391E0.1080709@iitk.ac.in>	<C9F964E1.2944%Eric.Kemp@nasa.gov>
	<BANLkTinSCpa6DFHxy3Lq0fWO5pCiKoKQcQ@mail.gmail.com>
Message-ID: <4DD4E59E.5000501@iitk.ac.in>

Hi,
I'm using gfortran version 4.2.4 right now but as I'm using a shared 
system updating gfortran is not an option. As Eric suggested, I will 
edit my module_initialize_real.F to remove those pointer and get back to 
you guys if anything goes wrong.

Arun

On Thursday 19 May 2011 03:33 AM, Dmitry N. Mikushin wrote:
> Arun,
>
> Could you check how old is your gfortran version and update it if it
> is too old? I've just checked gfortran 4.5 handle pointers marked
> intent(in) without any problems.
>
> - D.
>
> 2011/5/18 Kemp, Eric M. (GSFC-610.3)[NORTHROP GRUMMAN]<eric.kemp at nasa.gov>:
>> The problem is the "intent(in)" and "intent(out)" attributes with the
>> pointers in module_initialize_real.F.  Technically it is illegal in Fortran
>> 90 to use these attributes with pointer arguments (Fortran 2003 allows it).
>> Most Fortran compilers accept it, but the gfortran compiler is not one of
>> them.
>>
>> The fix is to modify module_initialize_real.F and remove the attributes,
>> then recompile.
>>
>> -Eric
>>
>>
>> On 5/18/11 5:31 AM, "Arun"<aruny at iitk.ac.in>  wrote:
>>
>>> Hi everyone,
>>>    I am trying to compile WRF on an intel machine but keep getting error
>>> related to module_initialize_real.f90 file. I'm attaching my log file
>>> along with this mail. Please see if someone can help me. Googling didn't
>>> help.
>>>
>>> Regards,
>>> Arun
>> --------------------------------------------------------------------
>> Eric M. Kemp                   Northrop Grumman Corporation
>> Meteorologist                  Information Systems
>> Civil Enterprise Solutions     Civil Systems Division
>>
>>                                Goddard Space Flight Center
>>                                Mailstop 610.3
>>                                Greenbelt, MD 20771
>>                                Telephone   301-286-9768
>>                                Fax         301-286-1775
>>                                E-mail:     eric.kemp at nasa.gov
>>                                E-mail:     eric.kemp at ngc.com
>> --------------------------------------------------------------------
>>
>>
>>
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>


From maemarcus at gmail.com  Thu May 19 04:23:20 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Thu, 19 May 2011 14:23:20 +0400
Subject: [Wrf-users] WRF 3.2.1 compilation errors
In-Reply-To: <4DD4E59E.5000501@iitk.ac.in>
References: <4DD391E0.1080709@iitk.ac.in> <C9F964E1.2944%Eric.Kemp@nasa.gov>
	<BANLkTinSCpa6DFHxy3Lq0fWO5pCiKoKQcQ@mail.gmail.com>
	<4DD4E59E.5000501@iitk.ac.in>
Message-ID: <BANLkTimrh=wt9COQqtVMCn0FW3OzrUZGoA@mail.gmail.com>

Ok, just in case, you can also install alternative version of gfortran
locally into your personal system account only, or switch between
multiple versions on system level using "module load",
"update-alternatives" or links.

- D.

2011/5/19 Arun <aruny at iitk.ac.in>:
> Hi,
> I'm using gfortran version 4.2.4 right now but as I'm using a shared system
> updating gfortran is not an option. As Eric suggested, I will edit my
> module_initialize_real.F to remove those pointer and get back to you guys if
> anything goes wrong.
>
> Arun
>
> On Thursday 19 May 2011 03:33 AM, Dmitry N. Mikushin wrote:
>>
>> Arun,
>>
>> Could you check how old is your gfortran version and update it if it
>> is too old? I've just checked gfortran 4.5 handle pointers marked
>> intent(in) without any problems.
>>
>> - D.
>>
>> 2011/5/18 Kemp, Eric M. (GSFC-610.3)[NORTHROP
>> GRUMMAN]<eric.kemp at nasa.gov>:
>>>
>>> The problem is the "intent(in)" and "intent(out)" attributes with the
>>> pointers in module_initialize_real.F. ?Technically it is illegal in
>>> Fortran
>>> 90 to use these attributes with pointer arguments (Fortran 2003 allows
>>> it).
>>> Most Fortran compilers accept it, but the gfortran compiler is not one of
>>> them.
>>>
>>> The fix is to modify module_initialize_real.F and remove the attributes,
>>> then recompile.
>>>
>>> -Eric
>>>
>>>
>>> On 5/18/11 5:31 AM, "Arun"<aruny at iitk.ac.in> ?wrote:
>>>
>>>> Hi everyone,
>>>> ? I am trying to compile WRF on an intel machine but keep getting error
>>>> related to module_initialize_real.f90 file. I'm attaching my log file
>>>> along with this mail. Please see if someone can help me. Googling didn't
>>>> help.
>>>>
>>>> Regards,
>>>> Arun
>>>
>>> --------------------------------------------------------------------
>>> Eric M. Kemp ? ? ? ? ? ? ? ? ? Northrop Grumman Corporation
>>> Meteorologist ? ? ? ? ? ? ? ? ?Information Systems
>>> Civil Enterprise Solutions ? ? Civil Systems Division
>>>
>>> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Goddard Space Flight Center
>>> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Mailstop 610.3
>>> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Greenbelt, MD 20771
>>> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Telephone ? 301-286-9768
>>> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Fax ? ? ? ? 301-286-1775
>>> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E-mail: ? ? eric.kemp at nasa.gov
>>> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E-mail: ? ? eric.kemp at ngc.com
>>> --------------------------------------------------------------------
>>>
>>>
>>>
>>> _______________________________________________
>>> Wrf-users mailing list
>>> Wrf-users at ucar.edu
>>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>>
>
>

From nschiff2 at atmos.uiuc.edu  Thu May 19 09:37:19 2011
From: nschiff2 at atmos.uiuc.edu (Nicole Schiffer)
Date: Thu, 19 May 2011 10:37:19 -0500
Subject: [Wrf-users] Error in boundary condition specification
Message-ID: <4DD5392F.1050804@earth.uiuc.edu>

I am trying to run the tutorial case that is one-way nesting using 
ndown. Running real.exe gives me the following error in three of the 
four rsl.out files:

    Domain  2: Current date being processed: 2005-08-28_00:00:00.0000,
    which is loop #   1 out of    5
      configflags%julyr, %julday, %gmt:         2005          240   
    0.000000
      metgrid input_wrf.F first_date_input = 2005-08-28_00:00:00
       metgrid input_wrf.F first_date_nml = 2005-08-28_00:00:00
      d02 2005-08-28_00:00:00 Timing for input          0 s.
      d02 2005-08-28_00:00:00          flag_soil_layers read from met_em
    file is  1
        *** Error in boundary condition specification
        boundary conditions at xs             0
        boundary conditions at xe             0
        boundary conditions at ys             0
        boundary conditions at ye             0
        boundary conditions logicals are
        periodic_x     F
        periodic_y     F
        symmetric_xs   F
        symmetric_xe   F
        symmetric_ys   F
        symmetric_ye   F
        open_xs        F
        open_xe        F
        open_ys        F
        open_ye        F
        polar          F
        nested         F
        specified      F
      -------------- FATAL CALLED ---------------
      FATAL CALLED FROM FILE: <stdin>  LINE:     165
       *** Error in boundary condition specification
      -------------------------------------------

Where should I look to solve this problem?

Thanks,
Nicole

-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
*     Nicole Schiffer
*     Graduate Research Fellow (Dept. of Energy)
*     Department of Atmospheric Sciences
*     University of Illinois, Urbana-Champaign
*     Email: nschiff2 [at] illinois [dot] edu
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

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From wrf at nusculus.com  Wed May 18 20:45:05 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Wed, 18 May 2011 20:45:05 -0600
Subject: [Wrf-users] WRF-CCSM
In-Reply-To: <BB91CFD22006F54687E86A28D1AAC62C061B9867@PLUTO.ad.murdoch.edu.au>
References: <AcwKO1+7fnxOb5zmQVuzuTxURTat/g==>
	<BB91CFD22006F54687E86A28D1AAC62C061B9867@PLUTO.ad.murdoch.edu.au>
Message-ID: <BANLkTimAnPgScxPg3uWkFF+RfswXoZ-SpQ@mail.gmail.com>

Hi Jatin,

I noticed that nobody gave you an answer, so I thought I would give it a
try:

Within WRF, Noah LSM does not need continuous soil temperature and moisture
data. real.exe creates data in the wrfinput_d0? file for initial conditions,
but from there the LSMs models soil temperature and moisture themselves
based on what the atmosphere does, and which in turn affects the atmosphere,
of course. Even if you use the sst update option, there is no soil moisture
or temperature data in the wrflowinp_d0? files. The WPS process uses a lot
of variables, but some only make it into the initial conditions, not ongoing
forcings.

Regarding the intermediate format - the users guide gives a description of
the format, and it also mentions that the source code
metgrid/src/write_met_module.F90 can be used as a starting point. You
probably knew that already. The netCDF folks at unidata(?) (Google netCDF)
have library interfaces for several programming languages so you might find
one that fits your programming experience. I have not written intermediate
format myself, so I can't help with any source code. Sorry.

Best Wishes,
Kevin

On Wed, May 4, 2011 at 3:12 AM, Jatin Kala <J.Kala at murdoch.edu.au> wrote:

>  Hi there,
>
>
>
> I am trying to run WRF with CCSM data, and is starting to write some code
> to do the conversion from netcdf to ?intermediate? format. Turns out it?s a
> fairly massive job to do from scratch, and I am just wondering if somebody
> has already done some of that and is willing to share their code ?
>
>
>
> One thing I am yet to figure out is that the Noah LSM needs 6 hourly soil
> data (I am pretty sure), but 6 hourly soil data is seldom available from any
> GCM! The best I have found is some monthly means?. Does this mean I have to
> somehow interpolate monthly means to 6 hourly ? any suggestions?
>
>
>
> Cheers,
>
>
>
> Jatin
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From ela at cola.iges.org  Thu May 19 14:13:49 2011
From: ela at cola.iges.org (Eric Altshuler)
Date: Thu, 19 May 2011 16:13:49 -0400 (EDT)
Subject: [Wrf-users] Error in boundary condition specification
In-Reply-To: <4DD5392F.1050804@earth.uiuc.edu>
Message-ID: <155597868.39156.1305836029704.JavaMail.root@mail.iges.org>

Hi Nicole,

A domain has to get its lateral boundary conditions from either the forcing dataset (e.g. GFS, NAM, ECMWF etc.) or its parent domain. If the domain is the "coarse" domain (i.e. has the lowest resolution), it is numbered as domain 1 and gets its lateral boundary conditions from the forcing dataset. Your namelist.input should have

specified = .true., .false., .false., [.false., ...]

Your error message pertains to domain 2. If it's a nest (which it most likely is, since there is usually only one coarse domain), your namelist.input should indicate this as follows:

nested = .false., .true., .true., [.true., ...]

Your problem is that for domain 2, 'nested' is .false. in your namelist. Change the setting of 'nested' to .true. for all nest domains.

Best regards,

Eric L. Altshuler
Assistant Research Scientist
Center for Ocean-Land-Atmosphere Studies
4041 Powder Mill Road, Suite 302
Calverton, MD 20705-3106
USA

E-mail: ela at cola.iges.org
Phone: (301) 902-1257
Fax: (301) 595-9793

----- Original Message -----
From: "Nicole Schiffer" <nschiff2 at atmos.uiuc.edu>
To: wrf-users at ucar.edu
Sent: Thursday, May 19, 2011 11:37:19 AM
Subject: [Wrf-users] Error in boundary condition specification


I am trying to run the tutorial case that is one-way nesting using ndown. Running real.exe gives me the following error in three of the four rsl.out files: 


Domain 2: Current date being processed: 2005-08-28_00:00:00.0000, which is loop # 1 out of 5 
configflags%julyr, %julday, %gmt: 2005 240 0.000000 
metgrid input_wrf.F first_date_input = 2005-08-28_00:00:00 
metgrid input_wrf.F first_date_nml = 2005-08-28_00:00:00 
d02 2005-08-28_00:00:00 Timing for input 0 s. 
d02 2005-08-28_00:00:00 flag_soil_layers read from met_em file is 1 
*** Error in boundary condition specification 
boundary conditions at xs 0 
boundary conditions at xe 0 
boundary conditions at ys 0 
boundary conditions at ye 0 
boundary conditions logicals are 
periodic_x F 
periodic_y F 
symmetric_xs F 
symmetric_xe F 
symmetric_ys F 
symmetric_ye F 
open_xs F 
open_xe F 
open_ys F 
open_ye F 
polar F 
nested F 
specified F 
-------------- FATAL CALLED --------------- 
FATAL CALLED FROM FILE: <stdin> LINE: 165 
*** Error in boundary condition specification 
------------------------------------------- 
Where should I look to solve this problem? 

Thanks, 
Nicole 
-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
*     Nicole Schiffer
*     Graduate Research Fellow (Dept. of Energy)
*     Department of Atmospheric Sciences
*     University of Illinois, Urbana-Champaign
*     Email: nschiff2 [at] illinois [dot] edu
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu
http://mailman.ucar.edu/mailman/listinfo/wrf-users

From Michael.Zulauf at iberdrolaren.com  Fri May 20 13:39:37 2011
From: Michael.Zulauf at iberdrolaren.com (Zulauf, Michael)
Date: Fri, 20 May 2011 12:39:37 -0700
Subject: [Wrf-users] adaptive time step problems continue in WRF 3.3?
Message-ID: <B2A259FAA3CF26469FF9A7C7402C49970EFE4AC7@POREXUW03.ppmenergy.us>

Hi all. . .

While I (and others) had problems with adaptive time-stepping in WRF
3.2, I was hoping that this would be fixed in WRF 3.3.  Unfortunately,
I'm still having problems - although of a different sort.  In WRF 3.2 I
had problems with the data being output at times slightly "off" from
when they were supposed to be output (despite using the namelist options
that are supposed to fix that).  In WRF 3.3, I've gotten a crash that
appears to be related to Grid FDDA.  This is for a test case that worked
with adaptive time-stepping turned off.

The basics of the run are that there are 4 domains (27km, 9km, 3km,
1km), initialized and forced with 0.5 degree GFS, with the nested grids
being initialized at 3 hour intervals.

The crash occurs right after domain 3 is initialized (at hour 6), but
the message is that the time in the input file is not the time on the
domain for the FDDA file for domain 2.  I've included the bottom portion
of rsl.error.0000 (below), as well as my namelist.input.

Any thoughts on this?  Is this something that can be handled by changing
some of my namelist options?  Is this a problem with adaptive time
stepping and FDDA?

Thanks,
Mike



--------------------------------- rsl.error.0000
----------------------------------------------
 d02 2011-05-10_05:56:08+**/** *** Initializing nest domain # 3 from an
input file. ***
 d02 2011-05-10_05:56:08+**/** med_initialdata_input: calling
input_auxinput2
Timing for processing wrfinput file (stream 0) for domain        3:
1.82700 elapsed seconds.
 INPUT LandUse = "USGS"
 D03 3-D analysis nudging for wind is applied and Guv=   0.1000E-03
 D03 3-D analysis nudging for temperature is applied and Gt=
0.1000E-03
 D03 3-D analysis nudging for water vapor mixing ratio is applied and
Gq=   0.1000E-05
 D03 3-D analysis nudging for wind is turned off within the PBL.
 D03 3-D analysis nudging for temperature is turned off within the PBL.
 D03 3-D analysis nudging for water vapor mixing ratio is turned off
within the PBL.
 D03 3-D analysis nudging for wind is turned off below layer 19
 D03 3-D analysis nudging for temperature is turned off below layer 10
 D03 3-D analysis nudging for water vapor mixing ratio is turned off
below layer 10
 D03 analysis nudging is ramped down near the end of the nudging period,
       starting at  17.00h, ending at  18.00h.
 INPUT LandUse = "USGS"
 D03 3-D analysis nudging for wind is applied and Guv=   0.1000E-03
 D03 3-D analysis nudging for temperature is applied and Gt=
0.1000E-03
 D03 3-D analysis nudging for water vapor mixing ratio is applied and
Gq=   0.1000E-05
 D03 3-D analysis nudging for wind is turned off within the PBL.
 D03 3-D analysis nudging for temperature is turned off within the PBL.
 D03 3-D analysis nudging for water vapor mixing ratio is turned off
within the PBL.
 D03 3-D analysis nudging for wind is turned off below layer 19
 D03 3-D analysis nudging for temperature is turned off below layer 10
 D03 3-D analysis nudging for water vapor mixing ratio is turned off
below layer 10
 D03 analysis nudging is ramped down near the end of the nudging period,
       starting at  17.00h, ending at  18.00h.
Timing for main (dt= 48.00): time 2011-05-10_05:56:56 on domain   2:
11.03700 elapsed seconds.
Timing for main (dt= 48.00): time 2011-05-10_05:57:44 on domain   2:
8.30000 elapsed seconds.
Timing for main (dt= 48.00): time 2011-05-10_05:58:32 on domain   2:
4.54300 elapsed seconds.
Timing for main (dt= 48.00): time 2011-05-10_05:59:20 on domain   2:
4.84000 elapsed seconds.
Timing for Writing wrfout_d03_2011-05-10_06:00:00 for domain        3:
17.89600 elapsed seconds.
 d03 2011-05-10_06:00:00 Input data processed for aux input  10 for
domain   3
 WRF TILE   1 IS      1 IE     70 JS      1 JE     36
 WRF NUMBER OF TILES =   1
 D03 3-D analysis nudging reads new data at time =    360.000 min.
 D03 3-D analysis nudging bracketing times =   360.00  540.00 min.
Timing for main (dt= 20.00): time 2011-05-10_06:00:16 on domain   3:
27.35300 elapsed seconds.
Timing for main (dt= 48.00): time 2011-05-10_06:00:08 on domain   2:
32.13700 elapsed seconds.
Timing for main (dt=240.00): time 2011-05-10_06:00:00 on domain   1:
64.06500 elapsed seconds.
Timing for Writing wrfout_d01_2011-05-10_06:00:00 for domain        1:
13.37800 elapsed seconds.
 d01 2011-05-10_06:00:00 Input data processed for aux input  10 for
domain   1
Timing for processing lateral boundary for domain        1:    2.06900
elapsed seconds.
 D01 3-D analysis nudging reads new data at time =    360.000 min.
 D01 3-D analysis nudging bracketing times =   360.00  540.00 min.
Timing for Writing wrfout_d02_2011-05-10_06:00:00 for domain        2:
61.44100 elapsed seconds.
  Time in file: 2011-05-10_06:00:00
  Time on domain: 2011-05-10_06:00:08
 **WARNING** Time in input file not equal to time on domain **WARNING**
  **WARNING** Trying next time in file wrffdda_d02 ...
  Time in file: 2011-05-10_09:00:00
  Time on domain: 2011-05-10_06:00:08
 **WARNING** Time in input file not equal to time on domain **WARNING**
  **WARNING** Trying next time in file wrffdda_d02 ...
  Time in file: 2011-05-10_12:00:00
  Time on domain: 2011-05-10_06:00:08
 **WARNING** Time in input file not equal to time on domain **WARNING**
  **WARNING** Trying next time in file wrffdda_d02 ...
  Time in file: 2011-05-10_15:00:00
  Time on domain: 2011-05-10_06:00:08
 **WARNING** Time in input file not equal to time on domain **WARNING**
  **WARNING** Trying next time in file wrffdda_d02 ...
             3  input_wrf: wrf_get_next_time current_date:
2011-05-10_15:00:00 Status =            -4
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:     751
  ... Could not find matching time in input file wrffdda_d02
------------------------------------------------------------------------
-----------------------


----------------------------------- namelist.input
--------------------------------------------
&time_control
 run_days                            = 0,
 run_hours                           = 18,
 run_minutes                         = 0,
 run_seconds                         = 0,
 start_year                          = 2011,2011,2011,2011,
 start_month                         = 05,05,05,05,
 start_day                           = 10,10,10,10,
 start_hour                          = 00,03,06,09,
 start_minute                        = 00,   00,   00,   00,   00,   00,
 start_second                        = 00,   00,   00,   00,   00,   00,

 end_year                            = 2011,2011,2011,2011,
 end_month                           = 05,05,05,05,
 end_day                             = 10,10,10,10,
 end_hour                            = 18,18,18,18,
 end_minute                          = 00,   00,   00,   00,   00,   00,
 end_second                          = 00,   00,   00,   00,   00,   00,
 interval_seconds                    = 10800,
 input_from_file                     =
.true.,.true.,.true.,.true.,.true.,
 fine_input_stream                   = 0, 2, 2, 2, 
 io_form_auxinput2                   = 2
 history_interval                    = 180,180,60,20,
 frames_per_outfile                  =  1,  1,  1,  1,  1,  1, 
 restart                             = .false.,
 restart_interval                    = 1440,
 io_form_history                     = 2
 io_form_restart                     = 2
 io_form_input                       = 2
 io_form_boundary                    = 2
 debug_level                         = 0
 adjust_output_times                 = .true.
 /

 &domains
 time_step                           = 180,
 time_step_fract_num                 = 0,
 time_step_fract_den                 = 1,
 max_dom                             = 4,
 s_we                                =  1,1,1,1,
 e_we                                =  268,622,280,382,
 s_sn                                =  1,1,1,1,
 e_sn                                =  184,418,250,196,
 s_vert                              =  1,  1,  1,  1,  1, 1,
 e_vert                              = 31,  31,  31,  31,  31, 31,
 num_metgrid_levels                  =  27 ,
 eta_levels                          = 1.000, 0.993, 0.980, 0.966,
0.950, 0.933, 0.913, 0.892, 0.869, 0.844, 0.816, 0.786, 0.753, 0.718,
0.680, 0.639, 0.596, 0.550, 0.501, 0.451, 0.398, 0.345, 0.290, 0.236,
0.188, 0.145, 0.108, 0.075, 0.046, 0.021, 0.000,

 p_top_requested                     = 5000,
 dx                                  = 27000,9000,3000,1000,
 dy                                  = 27000,9000,3000,1000,
 grid_id                             = 1,  2,  3,  4,  5,  6,
 parent_id                           = 1,  1,  2,  3,  4,  5,
 i_parent_start                      = 1, 31, 91, 92,
 j_parent_start                      = 1, 23,183, 93,
 parent_grid_ratio                   = 1,  3,  3,  3,  3,  3,
 parent_time_step_ratio              = 1,  3,  3,  3,  3, 3,
 feedback                            = 0,
 smooth_option                       = 2
 use_adaptive_time_step              = .true.
 step_to_output_time                 = .true.
 target_cfl                          = 1.1,1.1,1.1,1.1,
 max_step_increase_pct               = 5, 51, 51, 51, 51, 51
 starting_time_step                  = 180, 60, 20, 6.66666667
 max_time_step                       = 240, 80, 26.66666667, 8.88888889
 min_time_step                       = 27, 9, 3, 1
 adaptation_domain                   = 4
 /

 &physics
 mp_physics                          = 5, 5, 5, 5, 
 ra_lw_physics                       = 1, 1, 1, 1, 
 ra_sw_physics                       = 1, 1, 1, 1, 
 radt                                = 30,    30,    30,    30,    30,
30,
 sf_sfclay_physics                   = 1, 1, 1, 1, 
 sf_surface_physics                  = 1, 1, 1, 1, 
 bl_pbl_physics                      = 1, 1, 1, 1, 
 bldt                                = 0,     0,     0,     0,     0,
0,
 cu_physics                          = 1,     1,     0,     0,     0,
0,
 cudt                                = 5,     5,     5,     0,     0,
0, 
 cam_abs_freq_s                      = 21600,
 levsiz                              = 59,
 paerlev                             = 29,
 cam_abs_dim1                        = 4,
 cam_abs_dim2                        = 31,
 isfflx                              = 1,
 ifsnow                              = 0,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 5,
 sf_urban_physics                    = 0,     0,     0,     0,
 mp_zero_out                         = 0,
 maxiens                             = 1,
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,
 slope_rad                           = 0,
 topo_shading                        = 0,
 /

 &fdda
 grid_fdda                           = 1,     1,     1,     1,
 gfdda_inname                        = "wrffdda_d<domain>",
 gfdda_interval_m                    = 180, 180,   180,   180,
 gfdda_end_h                         = 18, 18, 18, 18,
 io_form_gfdda                       = 2,
 fgdt                                = 0,     0,     0,     0,
 if_no_pbl_nudging_uv                = 1,     1,     1,     1,
 if_no_pbl_nudging_t                 = 1,     1,     1,     1,
 if_no_pbl_nudging_q                 = 1,     1,     1,     1,
 if_zfac_uv                          = 1,     1,     1,     1,
  k_zfac_uv                          = 19,   19,    19,    19,
 if_zfac_t                           = 1,     1,     1,     1,
  k_zfac_t                           = 10,   10,    10,    10,
 if_zfac_q                           = 1,     1,     1,     1,
  k_zfac_q                           = 10,   10,    10,    10,
 guv                                 = 0.0001,     0.0001,     0.0001,
0.0001,
 gt                                  = 0.0001,     0.0001,     0.0001,
0.0001,
 gq                                  = 0.000001,   0.000001,   0.000001,
0.000001,
 if_ramping                          = 1,
 dtramp_min                          = -60.0,
/

 &dynamics
 w_damping                           = 1,
 diff_opt                            = 1,
 km_opt                              = 4,
 diff_6th_opt                        = 0,
 diff_6th_factor                     = 0.12,
 base_temp                           = 290.
 damp_opt                            = 0,
 zdamp                               = 5000.,  5000.,  5000.,
 dampcoef                            = 0.01,   0.01,   0.01
 khdif                               = 0,      0,      0,
 kvdif                               = 0,      0,      0,
 non_hydrostatic                     = .true., .true., .true.,
 moist_adv_opt                       = 1,      1,      1,     1
 scalar_adv_opt                      = 1,      1,      1,     1
 use_baseparam_fr_nml                = .true.
 /

 &bdy_control
 spec_bdy_width                      = 5,
 spec_zone                           = 1,
 relax_zone                          = 4,
 specified                           = .true.,
.false.,.false.,.false.,.false., .false.,
 nested                              = .false., .true., .true.,.true.,
.true., .true.,
 /

 &grib2
 /

 &namelist_quilt
 nio_tasks_per_group = 0,
 nio_groups = 1,
 /
------------------------------------------------------------------------
-----------------------

-- 

PLEASE NOTE - NEW E-MAIL ADDRESS:
michael.zulauf at iberdrolaren.com

Mike Zulauf
Meteorologist, Lead Senior
Wind Asset Management 
Iberdrola Renewables
1125 NW Couch, Suite 700
Portland, OR 97209
Office: 503-478-6304  Cell: 503-913-0403



Please be advised that email addresses for Iberdrola Renewables personnel have changed to first.last at iberdrolaREN.com effective Aug. 16, 2010.  Please make a note.  Thank you.

This message is intended for the exclusive attention of the recipient(s) indicated.  Any information contained herein is strictly confidential and privileged.  If you are not the intended recipient, please notify us by return e-mail and delete this message from your computer system. Any unauthorized use, reproduction, alteration, filing or sending of this message and/or any attached files may lead to legal action being taken against the party(ies) responsible for said unauthorized use. Any opinion expressed herein is solely that of the author(s) and does not necessarily represent the opinion of the Company. The sender does not guarantee the integrity, speed or safety of this message, and does not accept responsibility for any possible damage arising from the interception, incorporation of viruses, or any other damage as a result of manipulation.



From ekimalab at gmail.com  Wed May 25 01:07:11 2011
From: ekimalab at gmail.com (Michael Bala)
Date: Wed, 25 May 2011 15:07:11 +0800
Subject: [Wrf-users] ungrib.exe make error
Message-ID: <BANLkTinn9Kua1gVBWUArMEBW=4NJm5pwWA@mail.gmail.com>

I tried compiling WPS but it failed to make ungrib.exe.

I have installed jasper, png, and zlib. And the NCL works too.

I did a grep of the compile.log and found this Errors:

make[2]: [enc_png.o] Error 1 (ignored)
> make[2]: [dec_png.o] Error 1 (ignored)
> make[2]: [libg2_4.a] Error 1 (ignored)
> make[1]: [ungrib.exe] Error 1 (ignored)
> make[2]: [enc_png.o] Error 1 (ignored)
> make[2]: [dec_png.o] Error 1 (ignored)
> make[2]: [libg2_4.a] Error 1 (ignored)
> make[2]: [enc_png.o] Error 1 (ignored)
> make[2]: [dec_png.o] Error 1 (ignored)
> make[2]: [libg2_4.a] Error 1 (ignored)
> make[1]: [g2print.exe] Error 1 (ignored)
> make[1]: [plotfmt.exe] Error 1 (ignored)
> make[1]: [plotgrids.exe] Error 1 (ignored)
>

Also,

ar: enc_png.o: No such file or directory
> ar: enc_png.o: No such file or directory
> ar: enc_png.o: No such file or directory
>

And,

ld: cannot find -lg2_4
> ld: cannot find -lg2_4
>

Are these related? I hope you can help me out.


Thanks,

Mike
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From carlosmgd5 at hotmail.com  Wed May 25 14:02:10 2011
From: carlosmgd5 at hotmail.com (Carlos Mario Gonzalez Duque)
Date: Wed, 25 May 2011 15:02:10 -0500
Subject: [Wrf-users] Problem running ndown
Message-ID: <COL121-W54BA7C962C7E8991942D4D94740@phx.gbl>


Hi

I am running the wrf model for 2 domains and I'm using ndown for this purpose. However, I have a problem running ndown and I'm lost about the solution. I can generate correctly the input files to run the program, but after running ndown the following error appears in rsl.error file:
   
-------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:     355
 program ndown: opening too many files
 -------------------------------------------

The namelist.input file that I have been using is:

&time_control
run_days                 = 0,
run_hours                = 12,
run_minutes              = 0,
run_seconds              = 0,
start_year               = 2010, 2010,
start_month              = 10, 10,
start_day                = 15, 15,
start_hour               = 00, 00,
end_year                 = 2010, 2010,
end_month                = 10, 10,
end_day                  = 16, 16,
end_hour                 = 00, 00,
interval_seconds         = 21600,
input_from_file          = .true., .true.,
history_interval         = 30, 30,
frames_per_outfile       = 1000, 1000,
restart                  = .false.,
restart_interval         = 720,
io_form_history          = 2,
io_form_restart          = 2,
io_form_input            = 2,
io_form_boundary         = 2,
io_form_auxinput2        = 2,
debug_level              = 0,
/
&domains
time_step                = 90,
time_step_fract_num      = 0,
time_step_fract_den      = 1,
max_dom                  = 2,
s_we                     = 1, 1,
e_we                     = 244, 292,
s_sn                     = 1, 1,
e_sn                     = 187, 235,
s_vert                   = 1, 1,
e_vert                   = 28, 28,
p_top_requested          = 5000,
num_metgrid_levels       = 27,
num_metgrid_levels       = 27,
num_metgrid_soil_levels  = 4,
dx                       = 2766.667, 922.222,
dy                       = 2766.667, 922.222,
grid_id                  = 1, 2,
parent_id                = 1, 1,
i_parent_start           = 1, 57,
j_parent_start           = 1, 48,
parent_grid_ratio        = 1, 3,
parent_time_step_ratio   = 1, 3,
feedback                 = 0,
smooth_option            = 0,
use_adaptive_time_step = .true.,
step_to_output_time = .true.,
target_cfl = 1.2,
max_step_increase_pct = 5,
starting_time_step = -1,
max_time_step = -1,
min_time_step = -1,
/
&physics
mp_physics               = 3, 3,
ra_lw_physics            = 1, 1,
ra_sw_physics            = 1, 1,
radt                     = 30, 30,
sf_sfclay_physics        = 1, 1,
sf_surface_physics       = 2, 2,
bl_pbl_physics           = 1, 1,
bldt                     = 0, 0,
cu_physics               = 1, 1,
cudt                     = 5, 5,
isfflx                   = 1,
ifsnow                   = 0,
icloud                   = 1,
surface_input_source     = 1,
num_soil_layers          = 4,
sf_urban_physics         = 0, 0,
maxiens                  = 1,
maxens                   = 3,
maxens2                  = 3,
maxens3                  = 16,
ensdim                   = 144,
tmn_update = 1,
sst_skin = 1,
/
&fdda
/
&dynamics
w_damping                = 0,
diff_opt                 = 1,
km_opt                   = 4,
diff_6th_opt             = 0, 0,
diff_6th_factor          = 0.12, 0.12,
base_temp                = 290.,
damp_opt                 = 0,
zdamp                    = 5000., 5000.,
dampcoef                 = 0.2,  0.2,
khdif                    = 0, 0,
kvdif                    = 0, 0,
non_hydrostatic          = .true., .true.,
moist_adv_opt            = 1, 1,
scalar_adv_opt           = 1, 1,
/
&bdy_control
spec_bdy_width           = 5,
spec_zone                = 1,
relax_zone               = 4,
spec_exp = 0.33,
specified                = .true.,
nested                   = .false., .true.,
/
&grib2
/
&namelist_quilt
nio_tasks_per_group      = 0,
nio_groups               = 1,
/

I'm new using wrf model. In this sense, I really appreciate if anyone can help me with this problem.   

Thanks for your attention
 
-----------------------------------
Carlos Mario Gonzalez Duque

Ingeniero Qu?mico
Universidad Nacional de Colombia Sede Manizales

 		 	   		  
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From hamed319 at yahoo.com  Sun May 22 05:06:56 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Sun, 22 May 2011 04:06:56 -0700 (PDT)
Subject: [Wrf-users] Changing land use
Message-ID: <358161.27758.qm@web161215.mail.bf1.yahoo.com>

Dear All,
I want to change some values?of my landuse in order to see how it affects the whole domain. For example,
change part of the landuse to Forest or Lack.
Does anyone know about this issue?
Thanks in advance,

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com? | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? | hamed_sharifi at aut.ac.ir |
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From jason.evans at unsw.edu.au  Wed May 25 01:03:33 2011
From: jason.evans at unsw.edu.au (Jason Evans)
Date: Wed, 25 May 2011 17:03:33 +1000
Subject: [Wrf-users] WRF modelling postdoctoral position at UNSW Sydney,
	Australia
Message-ID: <4DDCA9C5.5000605@unsw.edu.au>

Dear WRF-users,

Below is a position available for a WRF modeller to work in the Climate 
Change Research Centre at the University of New South Wales, Sydney, 
Australia. Please forward to anyone you think may be interested.

Cheers,
Jason


  Research Associate


Job Reference: 8012NET
*Salary Level A/B:* A$72,675 - A$96,231 per year, plus 17% employer 
superannuation plus leave loading.The salary level will be commensurate 
with experience.
Applications are invited from suitably qualified researchers to join the 
Climate Change Research Centre on a project led by Dr Jason Evans to 
produce an ensemble of regional climate projections for south-east 
Australia using the Weather Research and Forecasting (WRF) modeling 
system. This project is funded by the New South Wales Office of 
Environment and Heritage.
The successful applicant will have relevant experience in atmospheric 
modelling, coupled climate modelling, regional climate modelling and 
climate variability/change.An individual with a PhD in quantitative 
applied mathematics or physics would also likely be very competitive 
without explicit experience in regional climate modelling. The ideal 
candidate will also possess demonstrated programming experience in a 
Unix/Linux environment (e.g. Fontran 9X, shell scripts, NCL, R, Matlab).
This is a fulltime, fixed term position for two years with the 
possibility of extension to three years.

For more information
http://www.hr.unsw.edu.au/services/recruitment/jobs/20051104.html

-- 
Dr. Jason P. Evans
ARC Australian Research Fellow
Senior Lecturer
Climate Change Research Centre
University of New South Wales
Sydney, NSW, 2052
Australia

email: jason.evans at unsw.edu.au
ph: +61-2-9385 7066
fax: +61-2-9385 7123

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From ahsanshah01 at gmail.com  Wed May 25 22:00:13 2011
From: ahsanshah01 at gmail.com (Ahsan Ali)
Date: Thu, 26 May 2011 09:00:13 +0500
Subject: [Wrf-users] ungrib.exe make error
Message-ID: <BANLkTinmYJD6y0pXDYJX1dA7guzqv=N6ig@mail.gmail.com>

>
> Please check the path to wrf directory in configure.wps (WRF_DIR
>       =       ../WRFV3) before compiling.
>


>
> Message: 1
> Date: Wed, 25 May 2011 15:07:11 +0800
> From: Michael Bala <ekimalab at gmail.com>
> Subject: [Wrf-users] ungrib.exe make error
> To: wrf-users at ucar.edu
> Message-ID: <BANLkTinn9Kua1gVBWUArMEBW=4NJm5pwWA at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> I tried compiling WPS but it failed to make ungrib.exe.
>
> I have installed jasper, png, and zlib. And the NCL works too.
>
> I did a grep of the compile.log and found this Errors:
>
> make[2]: [enc_png.o] Error 1 (ignored)
> > make[2]: [dec_png.o] Error 1 (ignored)
> > make[2]: [libg2_4.a] Error 1 (ignored)
> > make[1]: [ungrib.exe] Error 1 (ignored)
> > make[2]: [enc_png.o] Error 1 (ignored)
> > make[2]: [dec_png.o] Error 1 (ignored)
> > make[2]: [libg2_4.a] Error 1 (ignored)
> > make[2]: [enc_png.o] Error 1 (ignored)
> > make[2]: [dec_png.o] Error 1 (ignored)
> > make[2]: [libg2_4.a] Error 1 (ignored)
> > make[1]: [g2print.exe] Error 1 (ignored)
> > make[1]: [plotfmt.exe] Error 1 (ignored)
> > make[1]: [plotgrids.exe] Error 1 (ignored)
> >
>
> Also,
>
> ar: enc_png.o: No such file or directory
> > ar: enc_png.o: No such file or directory
> > ar: enc_png.o: No such file or directory
> >
>
> And,
>
> ld: cannot find -lg2_4
> > ld: cannot find -lg2_4
> >
>
> Are these related? I hope you can help me out.
>
>
> Thanks,
>
> Mike
>

-- 
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014
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From J.Kala at murdoch.edu.au  Wed May 25 19:11:02 2011
From: J.Kala at murdoch.edu.au (Jatin Kala)
Date: Thu, 26 May 2011 09:11:02 +0800
Subject: [Wrf-users] Changing land use
In-Reply-To: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
Message-ID: <BB91CFD22006F54687E86A28D1AAC62C06765966@PLUTO.ad.murdoch.edu.au>

One method would be to run geogrid.exe and modify LU_index in the
geo_em* files, and re-write the geo_em* files. I have not tried that
myself.

 

Cheers,

 

Jatin 

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Hamed Sharifi
Sent: Sunday, 22 May 2011 7:07 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] Changing land use

 

Dear All,

I want to change some values of my landuse in order to see how it
affects the whole domain. For example,

change part of the landuse to Forest or Lack.

Does anyone know about this issue?

Thanks in advance,

 

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com  | 
+98-9364024805                            | hamed_sharifi at aut.ac.ir |

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From ybao2009 at gmail.com  Wed May 25 17:08:51 2011
From: ybao2009 at gmail.com (Yan Bao)
Date: Wed, 25 May 2011 17:08:51 -0600
Subject: [Wrf-users] wrf-les running
Message-ID: <BANLkTikvMK37bh90KFYezjVN8=VXiYsK7g@mail.gmail.com>

Hi, Everyone,
     I'm trying to run WRF-LES with defaulted case (no any changes from
README.namelist and input_sounding
in test/em_les/), but cannot make it successfully. Firstly when running
ideal.exe,
I got the NaN in rsl.out.0000 file, through the rsl.error.0000 and
rsl.out.0000 ended with  'wrf initilizale successfully",
and wrfinput_d01 file was generated, with all LU_INDEX values were 0. After
changed ztop in namelist.input from
19000 to 10000m, there was no NaN data appeared in rsl.out.0000 file any
more (see the following). I'm not sure if this
kind of change reasonable or not.  While when run wrf.exe,  I got the
message as the following (wether I adjusted ztop
 in namelist.input file). BTW, I have set up 'ulimit -s unlimited' in wrf
running script, the geo*nc file was provided
 in WPS subdirectory.  The namelist.input file was also posted below.

     Based on these probelms, I got couple of questions:
1. How to determine ztop in the namelist.input file? Is it related to
"p_top_request" or sounding data provided?
2. How does the WRF model initilizate land surface variables (LU_INDEX, soil
) in an ideal case? Seems wrf.exe cannot
run because the  MMINLU was not defined. Do I need to set up it in code or
provide more surface information in namelist.input
file?But how I'm supposed to do it since as I know almost all the surface
related options are for real case?
3 Is any one willing to post his/her namelist.input file so I can take an
example?

    Thanks, any of your help is appreciated.

    Yan





 I also post the namelist.input file below. If any one
met this kind of problem and how you process this? Can you post your
namelist.input file here?
You are

rsl.out.0000 for running ideal.exe

returned from reading sounding, nl_in is            41
  ptop is     4755.000 ---------------  (is this reasonable ?)
  base state grid%mub(1,1), p_surf is     95246.47        100001.5

  getting moist sounding for full state
  input sounding surface parameters
  surface pressure (mb)     1000.000
  surface pot. temp (K)     305.0000
  surface mixing ratio (g/kg)     14.00000
   1  0.250E+02  0.300E+03  0.100E+02  0.000E+00  0.000E+00
   2  0.750E+02  0.300E+03  0.100E+02  0.000E+00  0.000E+00
   3  0.125E+03  0.300E+03  0.100E+02  0.000E+00  0.000E+00
   4  0.175E+03  0.300E+03  0.100E+02  0.000E+00  0.000E+00
   ...
   41 0.205E+03 ....
   grid%ph_1 calc     0.000000        38.26545        95099.04
   -147.4297       0.8720049       1.2673497E-02   -27.00002
  nxc, nyc for perturbation            45           40

  delt for perturbation     3.000000
  grid%mu_1 from comp    -147.4297

  full state sounding from comp, ph, grid%p, grid%al, grid%t_1, qv
  1   0.000E+00  9.852E+04  8.843E-01  3.000E+02  1.000E-02
  2   3.115E+03  9.496E+04  9.079E-01  3.000E+02  1.000E-02
  3   6.313E+03  9.140E+04  9.330E-01  3.000E+02  1.000E-02
  4   9.599E+03  8.786E+04  9.769E-01  3.083E+02  4.000E-03
  5   1.304E+04  8.432E+04  1.009E+00  3.094E+02  4.000E-03
  6   1.659E+04  8.078E+04  1.044E+00  3.105E+02  4.000E-03
  7   2.027E+04  7.725E+04  1.082E+00  3.116E+02  4.000E-03
  8   2.409E+04  7.371E+04  1.123E+00  3.127E+02  4.000E-03
  9   2.804E+04  7.018E+04  1.168E+00  3.139E+02  4.000E-03
 10   3.215E+04  6.664E+04  1.216E+00  3.150E+02  4.000E-03
 11   3.644E+04  6.310E+04  1.269E+00  3.162E+02  4.000E-03
 12   4.091E+04  5.957E+04  1.327E+00  3.173E+02  4.000E-03
 13   4.558E+04  5.603E+04  1.391E+00  3.185E+02  4.000E-03
 14   5.048E+04  5.249E+04  1.463E+00  3.196E+02  4.000E-03
 15   5.563E+04  4.896E+04  1.543E+00  3.207E+02  4.000E-03
 16   6.107E+04  4.542E+04  1.634E+00  3.219E+02  4.000E-03
 17   6.682E+04  4.189E+04  1.737E+00  3.230E+02  4.000E-03
 18   7.294E+04  3.835E+04  1.857E+00  3.242E+02  4.000E-03
 19   7.948E+04  3.481E+04  1.996E+00  3.253E+02  4.000E-03
 20   8.651E+04  3.128E+04  2.163E+00  3.264E+02  4.000E-03
 21   9.413E+04  2.774E+04  2.365E+00  3.276E+02  4.000E-03
 22   1.025E+05  2.420E+04  2.616E+00  3.287E+02  4.000E-03
 23   1.117E+05  2.067E+04  2.938E+00  3.299E+02  4.000E-03
 24   1.220E+05  1.713E+04  3.371E+00  3.310E+02  4.000E-03
 25   1.339E+05  1.360E+04  3.990E+00  3.321E+02  4.000E-03
 26   1.479E+05  1.006E+04  4.965E+00  3.333E+02  4.000E-03
 27   1.654E+05  6.523E+03  6.788E+00  3.344E+02  4.000E-03

      pert state sounding from comp, grid%ph_1, pp, alp, grid%t_1, qv
  1   0.000E+00  2.815E+02  1.234E-02  4.079E-02  1.000E-02
  2   3.869E+01  2.517E+02  1.280E-02  4.079E-02  1.000E-02
  3   7.887E+01  2.220E+02  1.330E-02  4.079E-02  1.000E-02
  4   1.207E+02  2.028E+02  4.921E-03  8.330E+00  4.000E-03
  5   1.327E+02  1.941E+02  4.975E-03  9.361E+00  4.000E-03
  6   1.447E+02  1.855E+02  5.174E-03  1.047E+01  4.000E-03
  7   1.573E+02  1.769E+02  5.385E-03  1.161E+01  4.000E-03
  8   1.704E+02  1.683E+02  5.610E-03  1.275E+01  4.000E-03
  9   1.840E+02  1.596E+02  5.855E-03  1.389E+01  4.000E-03
 10   1.983E+02  1.510E+02  6.121E-03  1.503E+01  4.000E-03
 11   2.133E+02  1.424E+02  6.415E-03  1.617E+01  4.000E-03
 12   2.290E+02  1.337E+02  6.738E-03  1.731E+01  4.000E-03
 13   2.455E+02  1.251E+02  7.096E-03  1.845E+01  4.000E-03
 14   2.629E+02  1.165E+02  7.496E-03  1.959E+01  4.000E-03
 15   2.814E+02  1.079E+02  7.942E-03  2.073E+01  4.000E-03
 16   3.010E+02  9.923E+01  8.458E-03  2.187E+01  4.000E-03
 17   3.219E+02  9.060E+01  9.039E-03  2.301E+01  4.000E-03
 18   3.443E+02  8.197E+01  9.714E-03  2.415E+01  4.000E-03
 19   3.684E+02  7.334E+01  1.052E-02  2.529E+01  4.000E-03
 20   3.947E+02  6.471E+01  1.148E-02  2.643E+01  4.000E-03
 21   4.233E+02  5.608E+01  1.267E-02  2.757E+01  4.000E-03
 22   4.551E+02  4.746E+01  1.416E-02  2.871E+01  4.000E-03
 23   4.908E+02  3.883E+01  1.610E-02  2.986E+01  4.000E-03
 24   5.315E+02  3.020E+01  1.879E-02  3.099E+01  4.000E-03
 25   5.794E+02  2.157E+01  2.283E-02  3.214E+01  4.000E-03
 26   6.382E+02  1.294E+01  2.951E-02  3.328E+01  4.000E-03
 27   7.152E+02  4.314E+00  4.352E-02  3.442E+01  4.000E-03

   wrf: SUCCESS COMPLETE IDEAL INIT

rsl.out.0000 for wrf.exe

 Namelist dfi_control not found in namelist.input. Using registry defaults
for variables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variables in fire
  Ntasks in X             1 , ntasks in Y             1
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval and ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde             1           80            1           80
  ims,ime,jms,jme            -4           85           -4           85
  ips,ipe,jps,jpe             1           80            1           80
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain             1 ,     136632968  bytes allocated
   med_initialdata_input: calling input_input
    MMINLU error on input
 INITIALIZE THREE Noah LSM RELATED TABLES
 Skipping over LUTYPE = USGS
 Skipping over LUTYPE = MODIFIED_IGBP_MODIS_NOAH
 Skipping over LUTYPE = USGS-RUC
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:    1547
 Land Use Dataset '' not found in VEGPARM.TBL.

 namelist.input I used

 &time_control
 run_days                            = 1,
 run_hours                           = 12,
 run_minutes                         = 0,
 run_seconds                         = 0,
 start_year                          = 2008, 2008, 2008,
 start_month                         = 06,   01,   01,
 start_day                           = 06,   24,   24,
 start_hour                          = 00,   12,   12,
 start_minute                        = 00,   00,   00,
 start_second                        = 00,   00,   00,
 end_year                            = 2008, 2008, 2008,
 end_month                           = 06,   01,   01,
 end_day                             = 07,   25,   25,
 end_hour                            = 00,   12,   12,
 end_minute                          = 00,   00,   00,
 end_second                          = 00,   00,   00,
 interval_seconds                    = 10800
 input_from_file                     = .false.,.true.,.true.,
 history_interval                    = 60,  60,   60,
 frames_per_outfile                  = 1, 1000, 1000,
 restart                             = .false.,
 restart_interval                    = 5000,
 io_form_history                     = 2
 io_form_restart                     = 2
 io_form_input                       = 2
 io_form_boundary                    = 2
 debug_level                         = 0
 /

 &domains
 time_step                           = 5,
 time_step_fract_num                 = 0,
 time_step_fract_den                 = 1,
 max_dom                             = 1,
 e_we                                = 80,    112,   94,
 e_sn                                = 80,    97,    91,
 e_vert                              = 29,    28,    28,
 num_metgrid_levels                  = 30,
 num_metgrid_soil_levels             = 4,
 dx                                  = 100, 10000,  3333.33,
 dy                                  = 100, 10000,  3333.33,
 grid_id                             = 1,     2,     3,
 parent_id                           = 0,     1,     2,
 i_parent_start                      = 1,     31,    30,
 j_parent_start                      = 1,     17,    30,
 parent_grid_ratio                   = 1,     3,     3,
 parent_time_step_ratio              = 1,     3,     3,
 feedback                            = 1,
 smooth_option                       = 0
 ztop                                = 10000.

 interp_type                         = 2
 extrap_type                         = 2
 t_extrap_type                       = 2
 use_levels_below_ground             = .true.
 use_surface                         = .true.
 lagrange_order                      = 1
 zap_close_levels                    = 500
 lowest_lev_from_sfc                 = .false.
 force_sfc_in_vinterp                = 1
 sfcp_to_sfcp                        = .false.
 smooth_cg_topo                     = .false.
 use_tavg_for_tsk                    = .false.
 vert_refine_fact                    = 1
 /

 &physics
 mp_physics                          = 3,     3,     3,
 ra_lw_physics                       = 1,     1,     1,
 ra_sw_physics                       = 1,     1,     1,
 radt                                = 30,    30,    30,
 sf_sfclay_physics                   = 1,     1,     1,
 sf_surface_physics                  = 2,     2,     2,
 bl_pbl_physics                      = 0,     1,     1,
 bldt                                = 0,     0,     0,
 cu_physics                          = 1,     1,     0,
 cudt                                = 5,     5,     5,
 isfflx                              = 1,
 ifsnow                              = 0,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 4,
 sf_urban_physics                    = 0,     0,     0,
 maxiens                             = 1,
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,
 /

 &fdda
 /

 &dynamics
 w_damping                           = 0,
 diff_opt                            = 2,
 km_opt                              = 2,
 diff_6th_opt                        = 0,      0,      0,
 diff_6th_factor                     = 0.12,   0.12,   0.12,
 base_temp                           = 290.
 damp_opt                            = 0,
 zdamp                               = 5000.,  5000.,  5000.,
 dampcoef                            = 0.2,    0.2,    0.2
 khdif                               = 0,      0,      0,
 kvdif                               = 0,      0,      0,
 non_hydrostatic                     = .true., .true., .true.,
 moist_adv_opt                       = 1,      1,      1,
 scalar_adv_opt                      = 1,      1,      1,
 pert_coriolis                       = .true.,
 do_coriolis                         = .true.,
 do_curvature                        = .true.,
 do_gradp                            = .true.,
 /

 &bdy_control
 spec_bdy_width                      = 5,
 spec_zone                           = 1,
 relax_zone                          = 4,
 specified                           = .false., .false.,.false.,
 periodic_x                          = .true.,.false.,.false.,
 symmetric_xs                        = .false.,.false.,.false.,
 symmetric_xe                        = .false.,.false.,.false.,
 open_xs                             = .false.,.false.,.false.,
 open_xe                             = .false.,.false.,.false.,
 periodic_y                          = .true.,.false.,.false.,
 symmetric_ys                        = .false.,.false.,.false.,
 symmetric_ye                        = .false.,.false.,.false.,
 open_ys                             = .false.,.false.,.false.,
 open_ye                             = .false,.false.,.false.,
 nested                              = .false., .true., .true.,
 /

 &grib2
 /

 &namelist_quilt
 nio_tasks_per_group = 0,
 nio_groups = 1,
 /

  --
Yan
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From maria.frediani at gmail.com  Thu May 26 13:12:15 2011
From: maria.frediani at gmail.com (Maria Eugenia)
Date: Thu, 26 May 2011 15:12:15 -0400
Subject: [Wrf-users] problem running real with GFS fnl* data for 2005
Message-ID: <BANLkTinoD7AcxTcneL9xT7DtwKxzx4P7TQ@mail.gmail.com>

Dear wrf help,

I'm trying to run a simulation in ARW V3.2 (also tried V3.2.1 in a
different machine) using GFS fnl* grib1 data for a case in 2005
(http://dss.ucar.edu/datasets/ds083.2/matrix.html). I have been
running wrf successfully for a long time with other source of data.
I'm using the Vtable.GFS, and I have also tried Vtable.GFS+TROP and
Vtable.NCEP2, but I cannot run real.exe. In my rsl.error I get a list
of NetCDF error: NetCDF: Variable not found

I suspect there is something different with this dataset or the Vtable
is not adequate. Could you pls help me figure out what is going wrong?

Attached you find the rsl.error, namelist.wps and namelist.input and
.sh file I use to submit the simulation.

Thanks a lot
Maria E. B. Frediani
-------------------------------------------------------------------------------------
Visiting Scholar
University of Connecticut
School of Engineering
261 Glenbrook Rd
Storrs, CT 06269
frediani at engr.uconn.edu
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From ar.ragi at gmail.com  Sun May 29 23:52:46 2011
From: ar.ragi at gmail.com (A.R Ragi)
Date: Mon, 30 May 2011 11:22:46 +0530
Subject: [Wrf-users] WRF V3.3 error
Message-ID: <BANLkTi=J=UXV6wEi6fdwzgLfGwL0dozjEQ@mail.gmail.com>

Dear WRF Users,

I was running WRF Latest version (version 3.3) for 2004 aug 01 (24hr). The
WPS part is running successfully. But when am running real.exe the following
error am getting. I'm attaching the namelist.wps and namelist.input. Can
anyone help me to sort this out?
The same I had done for WRF3.1.1 and is successfully running.  Is this
problem with Version 3.3?



*taskid: 0 hostname: ajaymeru.cas.iitd.ernet.in
   ------ ERROR while reading namelist time_control ------
 Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
   ------ ERROR while reading namelist physics ------
 Namelist scm not found in namelist.input. Using registry defaults for
variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:    9094
 ERRORS while reading one or more namelists from namelist.input.
 -------------------------------------------
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0[unset]: aborting
job:
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0

*
Thanks in advance*
*

*-- *
*************************************************************************
*Regards,*
*A.R.Ragi*
*Research Scholar
*
*CAS, IIT Delhi*

*************************************************************************
*"I want to know how God created this world.
 I am not interested in this or that phenomenon.
 I want to know, his thought, the rest are details."
---Albert Einstein*

*************************************************************************
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From davidstephenbryan at yahoo.com  Sun May 29 08:09:27 2011
From: davidstephenbryan at yahoo.com (David Bryan)
Date: Sun, 29 May 2011 07:09:27 -0700 (PDT)
Subject: [Wrf-users] real.exe fail from NAM input
Message-ID: <200769.9734.qm@web65909.mail.ac4.yahoo.com>

I'm running WRF 3.3 with NAM input data.  The NAM data is NOMADS archived for 2010 and recently downloaded.

The problem is that real.exe does not produce wrfbdy_d01 or wrfinput_d01.  Of course, real.exe doesn't give much in terms of useful output to diagnose the problem.  I know that the domain and settings work fine with current GFS input.  

I'd appreciate any insight into what the problem might be.  My namelist.input follows.

Thanks!

 &time_control

 run_days                            = 0,

 run_hours                           = 3,

 run_minutes                         = 0,

 run_seconds                         = 0,

 start_year                          = 2010,2010,2010,2010,2010,

 start_month                         = 7,7,7,7,7, 

 start_day                           = 2,2,2,2,2,

 start_hour                          = 12,12,12,12,12,

 start_minute                        = 00,00,00,00,00,

 start_second                        = 00,00,00,00,00,

 end_year                            = 2010,2010,2010,2010,2010,

 end_month                           = 7,7,7,7,7, 

 end_day                             = 2,2,2,2,2,  

 end_hour                            = 15,15,15,15,15,

 end_minute                          = 00,00,00,00,00,

 end_second                          = 00,00,00,00,00,

 interval_seconds                    = 10800

 input_from_file                     = .true.,.true.,.true.,.true.,.true.,

 history_interval                    = 60,60,60,60,60, 

 frames_per_outfile                  = 1,1,1,1,1, 

 restart                             = .false.,

 restart_interval                    = 100000,

 io_form_history                     = 2,

 io_form_restart                     = 2,

 io_form_input                       = 2,

 io_form_boundary                    = 2,

 io_form_auxinput2                   = 2,

 debug_level                         = 0,

 /



 &domains
 eta_levels   = 1.000, 0.963, 0.953351547, 0.949933093, 0.915704803,
                0.881476513, 0.878268356, 0.850754286, 0.832777143,
                0.8148, 0.7778, 
                0.7407, 0.7037, 0.6667, 0.6296, 0.5926, 
                0.5556, 0.5185, 0.4815, 0.4444, 0.4074, 
                0.3704, 0.3333, 0.2963, 0.2593, 0.2222, 
                0.1852, 0.1481, 0.1111, 0.0741, 0.037, 
                0.000,

 time_step                           = 18,

 time_step_fract_num                 = 0,

 time_step_fract_den                 = 1,

 max_dom                             = 5,

 s_we                                = 1,1,1,1,1,

 e_we                                =  213, 49, 49, 49,49,

 s_sn                                = 1,1,1,1,1,

 e_sn                                =  129, 49, 49, 49,49,

 s_vert                              = 1,1,1,1,1,     

 e_vert                              = 32,32,32,32,32,   

 num_metgrid_levels                  = 27,

 dx                                  = 3000,1000,1000,1000,1000,

 dy                                  = 3000,1000,1000,1000,1000,

 grid_id                             = 1,2,3,4,5,     

 parent_id                           =   1,   1, 1,1,1,    

 i_parent_start                      =   1,  29, 31, 78,160,

 j_parent_start                      =   1,  70, 4, 103,27,

 parent_grid_ratio                   =   1,   3, 3,3,3,    

 parent_time_step_ratio              =   1,   3, 3,3,3,   

 feedback                            = 1,

 smooth_option                       = 2,

 use_adaptive_time_step= .false.,

 target_cfl            = 1.2,

 max_step_increase_pct = 100,

 starting_time_step    = -1,

 max_time_step         = 110,

 min_time_step         = 5,

 /



 &physics

 mp_physics                          = 3, 3, 3, 3, 3,
 ra_lw_physics                       = 1, 1, 1, 1, 1,
 ra_sw_physics                       = 1, 1, 1, 1, 1,
 radt                                = 2, 1, 1, 1, 1,
 sf_sfclay_physics                   = 2, 2, 2, 2, 2,
 sf_surface_physics                  = 2, 2, 2, 2, 2,
 bl_pbl_physics                      = 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 bldt                                = 0, 0, 0, 0, 0,
 cu_physics                          = 0, 0, 0, 0, 0,
 cudt                                = 5, 5, 5, 5, 5,
 isfflx                              = 1, 
 ifsnow                              = 1,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 4, 
 maxiens                             = 1, 
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,
 /

 &fdda
 /

 &dynamics
 rk_ord                              = 3,
 w_damping                           = 1,
 diff_opt                            = 2,
 km_opt                              = 2,

 damp_opt                            = 0,

 moist_adv_opt                       = .true.,.true.,.true.,.true.,.true.,

 scalar_adv_opt                      = .true.,.true.,.true.,.true.,.true.,

 tke_adv_opt                         = .true.,.true.,.true.,.true.,.true.,

 zdamp                               = 5000.,5000.,5000.,5000.,5000., 

 dampcoef                            = 0.2,0.2,0.2,0.2,0.2,   

 khdif                               = 0,0,   

 kvdif                               = 0,0,  

 smdiv                               = 0.1,0.1,0.1,0.1,0.1,  

 emdiv                               = 0.01,0.01,0.01,0.01,0.01, 

 epssm                               = 0.1,0.1,0.1,0.1,0.1,  

 non_hydrostatic                     = .true.,.true.,.true.,.true.,.true., 

 time_step_sound                     = 4,4,4,4,4,      

 h_mom_adv_order                     = 5,5,5,5,5,      

 v_mom_adv_order                     = 3,3,3,3,3,     

 h_sca_adv_order                     = 5,5,5,5,5,   

 v_sca_adv_order                     = 3,3,3,3,3,  

 diff_6th_opt                        = 0,0,

 diff_6th_factor                     = 0.06,0.06,0.06,0.06,0.06,

 /



 &bdy_control

 spec_bdy_width                      = 5,

 spec_zone                           = 1,

 relax_zone                          = 4,

 specified                           = .true.,.false.,.false.,.false.,.false.,

 periodic_x                          = .false.,.false.,.false.,.false.,.false.,

 symmetric_xs                        = .false.,.false.,.false.,.false.,.false.,

 symmetric_xe                        = .false.,.false.,.false.,.false.,.false.,

 open_xs                             = .false.,.false.,.false.,.false.,.false.,

 open_xe                             = .false.,.false.,.false.,.false.,.false.,

 periodic_y                          = .false.,.false.,.false.,.false.,.false.,

 symmetric_ys                        = .false.,.false.,.false.,.false.,.false.,

 symmetric_ye                        = .false.,.false.,.false.,.false.,.false.,

 open_ys                             = .false.,.false.,.false.,.false.,.false.,

 open_ye                             = .false.,.false.,.false.,.false.,.false.,

 nested                              = .false.,.true.,.true.,.true.,.true.,.true.,

 /



 &grib2

 /



 &namelist_quilt

 nio_tasks_per_group = 0,

 nio_groups = 1,

 /

 background_maps= 10,10,10,10,10
                                                                                                                                   


            


  


                                          


            


  


          


  



  






  




From ebeigi3 at tigers.lsu.edu  Mon May 30 18:34:21 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Mon, 30 May 2011 20:34:21 -0400
Subject: [Wrf-users] read_wrf_nc.f error
Message-ID: <BANLkTimRJRrFcQG0Rb8P-+ECBAEpd0scKw@mail.gmail.com>

Dear Sir/Madam,

Thanks  for your previous help. I am trying to use read_wrf_nc.f for
extracting my desire vaiables from wrf output files. i can see data inside
me_em..nc* files, but i can not see the output  of wrf (wrfout.do1...), and
this is my error message

/read_wrf_nc.f: line 1: Special: command not found
information: cannot open `information' (No such file or directory)
on:          cannot open `on' (No such file or directory)
the:         cannot open `the' (No such file or directory)
screen:      cannot open `screen' (No such file or directory)
./read_wrf_nc.f: line 3: Can: command not found
./read_wrf_nc.f: line 4: syntax error near unexpected token `('
./read_wrf_nc.f: line 4: `!  Can read double precision file (like WRF-Var)'

how can i extract some desired variables from wrfout files. i don't care
about maps, i just need numbers. i really appreciate your help

On Fri, May 27, 2011 at 10:09 PM, wrfhelp <wrfhelp at ucar.edu> wrote:

> Yes, they are, unless you change them in the namelist.wps file. It should
> not change when you change stand_lon.
> But you might want to change them if latitude 30 or 60 are not in your
> domain.
>
> wrfhelp
>
>
> On May 27, 2011, at 10:00 AM, Ehsan Beigi wrote:
>
>  Dear Sir/Madam,
>> Thanks for your previous help.  is truelat1  =  30.0, and  truelat2  =
>>  60.0 in Lambert projection is always the same for every domain? how about
>>  stand_lon = -98.0? if they are different for each domain, how can i
>> calculate them for my domain?
>>
>> Best Regards
>>
>> Ehsan Beigi
>>
>
> wrfhelp
> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>
>
>
>


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From hamed319 at yahoo.com  Fri May 27 06:03:27 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Fri, 27 May 2011 05:03:27 -0700 (PDT)
Subject: [Wrf-users] configre.wps request
Message-ID: <864411.9813.qm@web161213.mail.bf1.yahoo.com>

Dear All,
I need a mpi configuration (configure.wps file)? to compare. 

my configuration is:
$uname -a: 

Linux modeling-MS-7666 2.6.35-22-generic #33-Ubuntu SMP Sun Sep 19 20:34:50 UTC 2010 i686 GNU/Linux

$ifort --version:
ifort (IFORT) 12.0.4 20110427
Copyright (C) 1985-2011 Intel Corporation.? All rights reserved.

?$icc --version:
icc (ICC) 12.0.4 20110427
Copyright (C) 1985-2011 Intel Corporation.? All rights reserved.
?Thanks in advance,

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From hamed319 at yahoo.com  Fri May 27 06:21:13 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Fri, 27 May 2011 05:21:13 -0700 (PDT)
Subject: [Wrf-users] catastrophic error: could not open source file
	"asm/socket.h"
Message-ID: <915227.6134.qm@web161203.mail.bf1.yahoo.com>

Dear Sir/Ma'am,
In compiling wrf at screen I got this error:
/usr/include/bits/socket.h(381): catastrophic error: could not open source file "asm/socket.h"

Any idea?
Thanks in advance,

?

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From maria.frediani at gmail.com  Fri May 27 11:58:19 2011
From: maria.frediani at gmail.com (Maria Eugenia)
Date: Fri, 27 May 2011 13:58:19 -0400
Subject: [Wrf-users] Re : problem running real with GFS fnl* data for
	2005
In-Reply-To: <420548.98227.qm@web29018.mail.ird.yahoo.com>
References: <BANLkTinoD7AcxTcneL9xT7DtwKxzx4P7TQ@mail.gmail.com>
	<420548.98227.qm@web29018.mail.ird.yahoo.com>
Message-ID: <BANLkTinh5yONzPYzxFxf1aQO-ibjsQevvA@mail.gmail.com>

Hi everyone,

I guess the problem is in the computer, it's overloaded. It has been
running real.exe for 24h and it's not done yet.  Meanwhile I set up
the same simulation in a different machine, real.exe ran in less than
5 min and wrf.exe is working fine.

Regarding the error messages, I believe real.exe is complaining about
variables I don't have in the dataset. I mean, none of these variables
appear in my Vtable (default Vtable.GFS). Therefore I believe they are
either not in the dataset, or they are not necessary for the
simulation.

I'm describing the errors I found in my rsl.out file in case my
assumption is wrong, and somebody knows how to fix this.

I have a list of (1) "variable not found" and a list of (2) "attribute
not found", as shown below.

 d01 2005-10-07_18:00:00  NetCDF error: NetCDF: Variable not found
 d01 2005-10-07_18:00:00  NetCDF error in wrf_io.F90, line        2712
 Varname TAVGSFC

 d01 2005-10-07_18:00:00  NetCDF error: NetCDF: Attribute not found
 d01 2005-10-07_18:00:00  NetCDF error in ext_ncd_get_dom_ti.code
INTEGER, line          83  Element FLAG_TSK

For (1) the variables names are:

 TAVGSFC
 QV
 SPECHUMD
 ICEFRAC
 MU0
 T2
 SOIL_LEVELS
 SW
 SOILT
 SOILM
 SM000007
 SM007028
 SM028100
 SM100255
 ST000007
 ST007028
 ST028100
 ST100255
 SM010200
 SOILM000
 SOILM005
 SOILM020
 SOILM040
 SOILM160
 SOILM300
 SW000010
 SW010040
 SW040100
 SW100200
 SW010200
 SOILW000
 SOILW005
 SOILW020
 SOILW040
 SOILW160
 SOILW300
 ST010200
 SOILT000
 SOILT005
 SOILT020
 SOILT040
 SOILT160
 SOILT300
 TOPOSTDV
 TOPOSLPX
 TOPOSLPY
 SHDMAX
 SHDMIN
 SOILCAT
 VEGCAT
 SNOWH
 CANWAT
 SST
 LAI
 MF_VX_INV
 HGT
 TSK
 XLAT
 XLONG
 ALBBCK
 TMN


And for (2) the elements names are:

P_TOP
GMT
JULYR
JULDAY
FLAG_TSK
FLAG_TAVGSFC
FLAG_QV
FLAG_QC
FLAG_QR
FLAG_QI
FLAG_QS
FLAG_QG
FLAG_QNI
FLAG_SH
FLAG_P_INTERP
FLAG_SST
FLAG_SNOWH
FLAG_TOPOSOIL
FLAG_ICEDEPTH
FLAG_ICEFRAC
FLAG_SOIL_LEVELS

My netcdf version is 3.6.3, and I use gcc/gfortran 4.2.4. Please let
me know if these errors will compromise the results of my simulation.

Thanks ever
Maria E. B. Frediani
-------------------------------------------------------------------------------------
Visiting Scholar
University of Connecticut
School of Engineering
261 Glenbrook Rd
Storrs, CT 06269
frediani at engr.uconn.edu



On Fri, May 27, 2011 at 7:56 AM, moudi pascal <moudipascal at yahoo.fr> wrote:
> hello,
> what version of netcdf do u use?
>
>
> Pascal MOUDI IGRI
>
> Ph-D Student
> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
> Department of Physics
> Faculty of Science
> University of Yaounde I, Cameroon
> National Advanced Training School for Technical Education,
> Electricity Engineering, Douala
>
> Tel:+237 75 32 58 52
>
> ________________________________
> De : Maria Eugenia <maria.frediani at gmail.com>
> ? : wrf-users at ucar.edu
> Envoy? le : Jeu 26 mai 2011, 21h 12min 15s
> Objet?: [Wrf-users] problem running real with GFS fnl* data for 2005
>
> Dear wrf help,
>
> I'm trying to run a simulation in ARW V3.2 (also tried V3.2.1 in a
> different machine) using GFS fnl* grib1 data for a case in 2005
> (http://dss.ucar.edu/datasets/ds083.2/matrix.html). I have been
> running wrf successfully for a long time with other source of data.
> I'm using the Vtable.GFS, and I have also tried Vtable.GFS+TROP and
> Vtable.NCEP2, but I cannot run real.exe. In my rsl.error I get a list
> of NetCDF error: NetCDF: Variable not found
>
> I suspect there is something different with this dataset or the Vtable
> is not adequate. Could you pls help me figure out what is going wrong?
>
> Attached you find the rsl.error, namelist.wps and namelist.input and
> .sh file I use to submit the simulation.
>
> Thanks a lot
> Maria E. B. Frediani
> -------------------------------------------------------------------------------------
> Visiting Scholar
> University of Connecticut
> School of Engineering
> 261 Glenbrook Rd
> Storrs, CT 06269
> frediani at engr.uconn.edu
>

From Matthew.Foster at noaa.gov  Fri May 27 09:22:22 2011
From: Matthew.Foster at noaa.gov (Matt Foster)
Date: Fri, 27 May 2011 10:22:22 -0500
Subject: [Wrf-users] Changing land use
In-Reply-To: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
Message-ID: <4DDFC1AE.4030401@noaa.gov>

Hamed,

We have done experiments here in the past, where we modified the 
greeness fraction based on data from polar-orbiting satellites.  We 
simply modified the geo_em NetCDF file, and it worked well.  You should 
be able to take the same approach with land use.

Matt


On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
> Dear All,
> I want to change some values of my landuse in order to see how it 
> affects the whole domain. For example,
> change part of the landuse to Forest or Lack.
> Does anyone know about this issue?
> Thanks in advance,
> Hamed Sharifi,
> M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com  |
> +98-9364024805                            | hamed_sharifi at aut.ac.ir |
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

-- 
Do not go where the path may lead; go instead where there is no path and leave a trail.
-- Ralph Waldo Emerson

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From jaareval at gmail.com  Tue May 31 09:47:49 2011
From: jaareval at gmail.com (Jorge Alejandro Arevalo Borquez)
Date: Tue, 31 May 2011 11:47:49 -0400
Subject: [Wrf-users] Changing land use
In-Reply-To: <4DDFC1AE.4030401@noaa.gov>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
	<4DDFC1AE.4030401@noaa.gov>
Message-ID: <BANLkTikf2VAd5sjkciGNnCHTQiqWPdF1Cg@mail.gmail.com>

Hi,
other option is modify the binary files of some existing landuse (modis or
usgs), matlab read and write those files whit almost no problem.

Atentamente
Jorge Ar?valo B?rquez


On Fri, May 27, 2011 at 11:22 AM, Matt Foster <Matthew.Foster at noaa.gov>wrote:

>  Hamed,
>
> We have done experiments here in the past, where we modified the greeness
> fraction based on data from polar-orbiting satellites.  We simply modified
> the geo_em NetCDF file, and it worked well.  You should be able to take the
> same approach with land use.
>
> Matt
>
>
>
> On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
>
>  Dear All,
> I want to change some values of my landuse in order to see how it affects
> the whole domain. For example,
> change part of the landuse to Forest or Lack.
> Does anyone know about this issue?
> Thanks in advance,
>
> Hamed Sharifi,
> M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com  |
> +98-9364024805                            | hamed_sharifi at aut.ac.ir |
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.eduhttp://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> --
> Do not go where the path may lead; go instead where there is no path and leave a trail.
> -- Ralph Waldo Emerson
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From TitovM at ap.aurecongroup.com  Tue May 31 15:05:36 2011
From: TitovM at ap.aurecongroup.com (Mikhail Titov)
Date: Wed, 1 Jun 2011 07:05:36 +1000
Subject: [Wrf-users] Changing land use
In-Reply-To: <BANLkTikf2VAd5sjkciGNnCHTQiqWPdF1Cg@mail.gmail.com>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
	<4DDFC1AE.4030401@noaa.gov>
	<BANLkTikf2VAd5sjkciGNnCHTQiqWPdF1Cg@mail.gmail.com>
Message-ID: <BC579A123F09274394CDDC116A04C50201E78561F3@DCPEXMBX01.conwag.com>

Hi,

I have a program written on C that transforms any input terrestrial ASCII code file (topo, land-use and so on) in WPS binary format: 'rd_wr_binary.exe'.
It is written on C as Fortran always leaves empty bits between 2 lines that is not appropriate. This program is 2-direction one and can be used to check
binary input terrestrial files transforming them in ASCII code. The program is very flexible and easily can be changed and re-compiled.

Of cause after preparation of our own terrestrial files I create new subdirectory (with tiles) and 'index' file in 'geog' and edit "GEOGRID.TBL" in
' WPS/geogrid/' sub-directory to create several pointers on new terrestrial files and to choose an appropriate' interp_option'.

We use to create our own terrain and land-use files (using special statistical methods and GIS) all the time for fine resolution WRF runs
(1000 - 500m) to study wind resources for different on-shore and off-shore sites. USGS 2m - 30s terrestrial data is too coarse and very often is a crap.

Regards,
________________________________________________________________________________

Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955 | Mob: +64 21 106 5563
Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
PO Box 1061
http://www.aurecongroup.com<http://www.aurecongroup.com/>
http://www.aurecongroup.com/apac/groupentity/
_________________________________________________________________________________

Please consider your environment before printing this e-mail.

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jorge Alejandro Arevalo Borquez
Sent: Wednesday, 1 June 2011 3:48 a.m.
To: Matt Foster
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Changing land use

Hi,
other option is modify the binary files of some existing landuse (modis or usgs), matlab read and write those files whit almost no problem.

Atentamente
Jorge Ar?valo B?rquez

On Fri, May 27, 2011 at 11:22 AM, Matt Foster <Matthew.Foster at noaa.gov<mailto:Matthew.Foster at noaa.gov>> wrote:
Hamed,

We have done experiments here in the past, where we modified the greeness fraction based on data from polar-orbiting satellites.  We simply modified the geo_em NetCDF file, and it worked well.  You should be able to take the same approach with land use.

Matt



On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
Dear All,
I want to change some values of my landuse in order to see how it affects the whole domain. For example,
change part of the landuse to Forest or Lack.
Does anyone know about this issue?
Thanks in advance,

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com<mailto:hamed319 at yahoo.com>  |
+98-9364024805<tel:%2B98-9364024805>                            | hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |



_______________________________________________

Wrf-users mailing list

Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>

http://mailman.ucar.edu/mailman/listinfo/wrf-users



--

Do not go where the path may lead; go instead where there is no path and leave a trail.

-- Ralph Waldo Emerson

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users


Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
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From ebeigi3 at tigers.lsu.edu  Tue May 31 20:59:39 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Tue, 31 May 2011 22:59:39 -0400
Subject: [Wrf-users] read_wrf_nc.f error
In-Reply-To: <9BDE2A7F9712AF45A0C08451B3CD8E5C25771E73@mag9006>
References: <BANLkTimRJRrFcQG0Rb8P-+ECBAEpd0scKw@mail.gmail.com>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C25770BF7@mag9006>
	<BANLkTim0yV2AhraDXpvL-kAJEXniTg+NAQ@mail.gmail.com>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C25771E73@mag9006>
Message-ID: <BANLkTinNJ0ar+fhmX_sfpvs2Ub94TPkJ0Q@mail.gmail.com>

Thanks for your previous help. I tried to run WRF for diffent days by
changing the namelist.input , and WRF ran was ok for all of the days except
the last day. and everytime i encountered this error, i really appreciate
your help in advance



Timing for main: time 2011-04-10_00:00:00 on domain   3:    0.79400 elapsed
seconds.
Timing for Writing wrfout_d03_2011-04-10_00:00:00 for domain        3:
0.06420 elapsed seconds.
Timing for main: time 2011-04-10_00:00:00 on domain   2:    3.06700 elapsed
seconds.
Timing for Writing wrfout_d02_2011-04-10_00:00:00 for domain        2:
0.03080 elapsed seconds.
Timing for main: time 2011-04-10_00:00:00 on domain   1:    9.21270 elapsed
seconds.
Timing for Writing wrfout_d01_2011-04-10_00:00:00 for domain        1:
0.02410 elapsed seconds.
            2 input_wrf: wrf_get_next_time current_date: 2011-04-10_00:00:00
Sta
 tus =           -4
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:     705
   ... May have run out of valid boundary conditions in file wrfbdy_d01

Best Regards

Ehsan Beigi



On Tue, May 31, 2011 at 6:41 PM, Feng Liu <FLiu at azmag.gov> wrote:

>  It sounds good. If you need to extract one variable (VAR) in entire
> domain, you can use read_wrf_nc ?w VAR, if your need a time series of VAR in
> a specific location you may use
>
> Read_wrf_nc  ?ts  xy X Y VAR ?lev 1 wrfout_d*.nc
>
> You can get the basic application information about the program by
> read_wrf_nc ?help.
>
>
>
> Use shell programming to process multiple day runs.
>
>
>
> Hope it is helpful
>
> Feng
>
>
>
>
>
> *From:* Ehsan Beigi [mailto:ebeigi3 at tigers.lsu.edu]
> *Sent:* Tuesday, May 31, 2011 3:18 PM
> *To:* Feng Liu
> *Subject:* Re: [Wrf-users] read_wrf_nc.f error
>
>
>
> Thanks very much for you help. it worked!!!
> do you recommend me to use other software for reading wrfout, for example
> MATLAB netcdf toolbox?
>
> I ran the WRF for 30 days, now i don't know how i can  extract numbers of
> some variables for example Precipitation and Temperature for all grid for
> 30days among all of output?as you know there are many variables as output, i
> need to make time series of Precipitation and Temperature
>
> Best Regards
>
>
>
>
> Ehsan Beigi
>
>  On Tue, May 31, 2011 at 12:07 PM, Feng Liu <FLiu at azmag.gov> wrote:
>
> Hi,
>
> I think you failed to compile the program successfully due to incomplete
> flags. I wonder how did you compile this program?  If you are using Portland
> Group PGF90, for example, you may compile the program by:
>
> pgf90 read_wrf_nc.f -L/path_of_your_netCDF_lib -lnetcdf -lm
> -I/path_of_your_netCDF_include  -Mfree  -o read_wrf_nc
>
>
>
> Hope this is helpful.
>
> Thanks.
>
>
>
> *From:* wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] *On
> Behalf Of *Ehsan Beigi
> *Sent:* Monday, May 30, 2011 5:34 PM
> *To:* wrfhelp
> *Cc:* wrf-users at ucar.edu
> *Subject:* [Wrf-users] read_wrf_nc.f error
>
>
>
> Dear Sir/Madam,
>
> Thanks  for your previous help. I am trying to use read_wrf_nc.f for
> extracting my desire vaiables from wrf output files. i can see data inside
> me_em..nc* files, but i can not see the output  of wrf (wrfout.do1...), and
> this is my error message
>
> /read_wrf_nc.f: line 1: Special: command not found
> information: cannot open `information' (No such file or directory)
> on:          cannot open `on' (No such file or directory)
> the:         cannot open `the' (No such file or directory)
> screen:      cannot open `screen' (No such file or directory)
> ./read_wrf_nc.f: line 3: Can: command not found
> ./read_wrf_nc.f: line 4: syntax error near unexpected token `('
> ./read_wrf_nc.f: line 4: `!  Can read double precision file (like WRF-Var)'
>
> how can i extract some desired variables from wrfout files. i don't care
> about maps, i just need numbers. i really appreciate your help
>
> On Fri, May 27, 2011 at 10:09 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>
> Yes, they are, unless you change them in the namelist.wps file. It should
> not change when you change stand_lon.
> But you might want to change them if latitude 30 or 60 are not in your
> domain.
>
> wrfhelp
>
>
>
> On May 27, 2011, at 10:00 AM, Ehsan Beigi wrote:
>
> Dear Sir/Madam,
> Thanks for your previous help.  is truelat1  =  30.0, and  truelat2  =
>  60.0 in Lambert projection is always the same for every domain? how about
>  stand_lon = -98.0? if they are different for each domain, how can i
> calculate them for my domain?
>
> Best Regards
>
> Ehsan Beigi
>
>
>
> wrfhelp
> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>
>
>
>
> --
> *Ehsan Beigi*
> *PhD Student*
> *Department of Civil and and Environmental Engineering
> **2408 Patrick F. Taylor Hall
> Louisiana State University
> Baton Rouge, LA, 70803*
>
>
>
>
> --
> *Ehsan Beigi*
> *PhD Student*
> *Department of Civil and and Environmental Engineering
> **2408 Patrick F. Taylor Hall
> Louisiana State University
> Baton Rouge, LA, 70803*
>
>


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From FLiu at azmag.gov  Tue May 31 10:07:24 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Tue, 31 May 2011 16:07:24 +0000
Subject: [Wrf-users] read_wrf_nc.f error
In-Reply-To: <BANLkTimRJRrFcQG0Rb8P-+ECBAEpd0scKw@mail.gmail.com>
References: <BANLkTimRJRrFcQG0Rb8P-+ECBAEpd0scKw@mail.gmail.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C25770BF7@mag9006>

Hi,
I think you failed to compile the program successfully due to incomplete flags. I wonder how did you compile this program?  If you are using Portland Group PGF90, for example, you may compile the program by:
pgf90 read_wrf_nc.f -L/path_of_your_netCDF_lib -lnetcdf -lm  -I/path_of_your_netCDF_include  -Mfree  -o read_wrf_nc

Hope this is helpful.
Thanks.

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Ehsan Beigi
Sent: Monday, May 30, 2011 5:34 PM
To: wrfhelp
Cc: wrf-users at ucar.edu
Subject: [Wrf-users] read_wrf_nc.f error

Dear Sir/Madam,

Thanks  for your previous help. I am trying to use read_wrf_nc.f for extracting my desire vaiables from wrf output files. i can see data inside me_em..nc* files, but i can not see the output  of wrf (wrfout.do1...), and this is my error message

/read_wrf_nc.f: line 1: Special: command not found
information: cannot open `information' (No such file or directory)
on:          cannot open `on' (No such file or directory)
the:         cannot open `the' (No such file or directory)
screen:      cannot open `screen' (No such file or directory)
./read_wrf_nc.f: line 3: Can: command not found
./read_wrf_nc.f: line 4: syntax error near unexpected token `('
./read_wrf_nc.f: line 4: `!  Can read double precision file (like WRF-Var)'

how can i extract some desired variables from wrfout files. i don't care about maps, i just need numbers. i really appreciate your help
On Fri, May 27, 2011 at 10:09 PM, wrfhelp <wrfhelp at ucar.edu<mailto:wrfhelp at ucar.edu>> wrote:
Yes, they are, unless you change them in the namelist.wps file. It should not change when you change stand_lon.
But you might want to change them if latitude 30 or 60 are not in your domain.

wrfhelp


On May 27, 2011, at 10:00 AM, Ehsan Beigi wrote:
Dear Sir/Madam,
Thanks for your previous help.  is truelat1  =  30.0, and  truelat2  =  60.0 in Lambert projection is always the same for every domain? how about  stand_lon = -98.0? if they are different for each domain, how can i calculate them for my domain?

Best Regards

Ehsan Beigi

wrfhelp
http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html





--
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803

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From FLiu at azmag.gov  Tue May 31 10:37:29 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Tue, 31 May 2011 16:37:29 +0000
Subject: [Wrf-users] WRF V3.3 error
In-Reply-To: <BANLkTi=J=UXV6wEi6fdwzgLfGwL0dozjEQ@mail.gmail.com>
References: <BANLkTi=J=UXV6wEi6fdwzgLfGwL0dozjEQ@mail.gmail.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C25771C49@mag9006>

Hi,
The problem may be related to digital filter initialization (DFI) which can be used for multiple domains in V3.3. It should be set in a separate namelist record, how to add an extra namelist record for DFI in your namelist.input, you may refer to the examples.namelist attached in this version. Thanks.
Feng

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of A.R Ragi
Sent: Sunday, May 29, 2011 10:53 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] WRF V3.3 error

Dear WRF Users,

I was running WRF Latest version (version 3.3) for 2004 aug 01 (24hr). The WPS part is running successfully. But when am running real.exe the following error am getting. I'm attaching the namelist.wps and namelist.input. Can anyone help me to sort this out?
The same I had done for WRF3.1.1 and is successfully running.  Is this problem with Version 3.3?



taskid: 0 hostname: ajaymeru.cas.iitd.ernet.in<http://ajaymeru.cas.iitd.ernet.in>
   ------ ERROR while reading namelist time_control ------
 Namelist dfi_control not found in namelist.input. Using registry defaults for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for variables
 in tc
   ------ ERROR while reading namelist physics ------
 Namelist scm not found in namelist.input. Using registry defaults for variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for variable
 s in fire
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:    9094
 ERRORS while reading one or more namelists from namelist.input.
 -------------------------------------------
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0[unset]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0


Thanks in advance


--
***********************************************************************
Regards,
A.R.Ragi
Research Scholar
CAS, IIT Delhi

***********************************************************************
"I want to know how God created this world.
 I am not interested in this or that phenomenon.
 I want to know, his thought, the rest are details."
---Albert Einstein

***********************************************************************

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From hamed319 at yahoo.com  Tue May 31 23:09:36 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Tue, 31 May 2011 22:09:36 -0700 (PDT)
Subject: [Wrf-users] Best method for PBL
Message-ID: <71589.44026.qm@web161209.mail.bf1.yahoo.com>

Dear All,
Which of the PBL category does work the best for a Megacity?
Thanks,

?

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From hamed319 at yahoo.com  Wed Jun  1 04:46:45 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Wed, 1 Jun 2011 03:46:45 -0700 (PDT)
Subject: [Wrf-users] metgrid.exe---forrtl: severe (173)
Message-ID: <18438.66830.qm@web161215.mail.bf1.yahoo.com>

Dear All,
When I run metgrid.exe, I got this error:
forrtl: severe (173): A pointer passed to DEALLOCATE points to an array that cannot be deallocated
Any suggestion would be appreciated.
Thanks in advance,


?

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From mmkamal at uwaterloo.ca  Tue May 31 15:50:08 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Tue, 31 May 2011 17:50:08 -0400
Subject: [Wrf-users] Changing land use
In-Reply-To: <BC579A123F09274394CDDC116A04C50201E78561F3@DCPEXMBX01.conwag.com>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
	<4DDFC1AE.4030401@noaa.gov>
	<BANLkTikf2VAd5sjkciGNnCHTQiqWPdF1Cg@mail.gmail.com>
	<BC579A123F09274394CDDC116A04C50201E78561F3@DCPEXMBX01.conwag.com>
Message-ID: <20110531175008.75424udz5aeaasu8@www.nexusmail.uwaterloo.ca>

Hi Hamed,

I am currently working on some land use sensitivity experiment and I  
used an open source statistical package called "R" to read the land  
use binary data (inside the geog directory of the data set). Using R I  
am able to read the data set, then modified some category in my area  
of interest and save the modification. Finally, I fed the model with  
the modified data set and find that it does work properly. You can get  
more detail about "R" in the following link. Or simply make google  
search "read/write binary data using R".


Thanks
Kamal







Quoting Mikhail Titov <TitovM at ap.aurecongroup.com>:

> Hi,
>
> I have a program written on C that transforms any input terrestrial  
> ASCII code file (topo, land-use and so on) in WPS binary format:  
> 'rd_wr_binary.exe'.
> It is written on C as Fortran always leaves empty bits between 2  
> lines that is not appropriate. This program is 2-direction one and  
> can be used to check
> binary input terrestrial files transforming them in ASCII code. The  
> program is very flexible and easily can be changed and re-compiled.
>
> Of cause after preparation of our own terrestrial files I create new  
> subdirectory (with tiles) and 'index' file in 'geog' and edit  
> "GEOGRID.TBL" in
> ' WPS/geogrid/' sub-directory to create several pointers on new  
> terrestrial files and to choose an appropriate' interp_option'.
>
> We use to create our own terrain and land-use files (using special  
> statistical methods and GIS) all the time for fine resolution WRF runs
> (1000 - 500m) to study wind resources for different on-shore and  
> off-shore sites. USGS 2m - 30s terrestrial data is too coarse and  
> very often is a crap.
>
> Regards,
> ________________________________________________________________________________
>
> Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
> Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955  
> | Mob: +64 21 106 5563
> Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
> Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
> PO Box 1061
> http://www.aurecongroup.com<http://www.aurecongroup.com/>
> http://www.aurecongroup.com/apac/groupentity/
> _________________________________________________________________________________
>
> Please consider your environment before printing this e-mail.
>
> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu]  
> On Behalf Of Jorge Alejandro Arevalo Borquez
> Sent: Wednesday, 1 June 2011 3:48 a.m.
> To: Matt Foster
> Cc: wrf-users at ucar.edu
> Subject: Re: [Wrf-users] Changing land use
>
> Hi,
> other option is modify the binary files of some existing landuse  
> (modis or usgs), matlab read and write those files whit almost no  
> problem.
>
> Atentamente
> Jorge Ar?valo B?rquez
>
> On Fri, May 27, 2011 at 11:22 AM, Matt Foster  
> <Matthew.Foster at noaa.gov<mailto:Matthew.Foster at noaa.gov>> wrote:
> Hamed,
>
> We have done experiments here in the past, where we modified the  
> greeness fraction based on data from polar-orbiting satellites. We  
> simply modified the geo_em NetCDF file, and it worked well. You  
> should be able to take the same approach with land use.
>
> Matt
>
>
>
> On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
> Dear All,
> I want to change some values of my landuse in order to see how it  
> affects the whole domain. For example,
> change part of the landuse to Forest or Lack.
> Does anyone know about this issue?
> Thanks in advance,
>
> Hamed Sharifi,
> M.Sc Student, AUT Tehran/Iran  
> |hamed319 at yahoo.com<mailto:hamed319 at yahoo.com> |
> +98-9364024805<tel:%2B98-9364024805> |  
> hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |
>
>
>
> _______________________________________________
>
> Wrf-users mailing list
>
> Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
>
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
>
> --
>
> Do not go where the path may lead; go instead where there is no path  
> and leave a trail.
>
> -- Ralph Waldo Emerson
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
>





From wrf at nusculus.com  Tue May 31 10:02:44 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Tue, 31 May 2011 10:02:44 -0600
Subject: [Wrf-users] WRF V3.3 error
In-Reply-To: <BANLkTi=J=UXV6wEi6fdwzgLfGwL0dozjEQ@mail.gmail.com>
References: <BANLkTi=J=UXV6wEi6fdwzgLfGwL0dozjEQ@mail.gmail.com>
Message-ID: <BANLkTinpA79TD9_b4GRpqjFS7P0RtWRwnw@mail.gmail.com>

Hi,

Try removing the line with

 ##sst_update                          = 1

Trying to comment a namelist like that does not work for me.

Kevin

On Sun, May 29, 2011 at 11:52 PM, A.R Ragi <ar.ragi at gmail.com> wrote:

> Dear WRF Users,
>
> I was running WRF Latest version (version 3.3) for 2004 aug 01 (24hr). The
> WPS part is running successfully. But when am running real.exe the following
> error am getting. I'm attaching the namelist.wps and namelist.input. Can
> anyone help me to sort this out?
> The same I had done for WRF3.1.1 and is successfully running.  Is this
> problem with Version 3.3?
>
>
>
> *taskid: 0 hostname: ajaymeru.cas.iitd.ernet.in
>    ------ ERROR while reading namelist time_control ------
>  Namelist dfi_control not found in namelist.input. Using registry defaults
> for v
>  ariables in dfi_control
>  Namelist tc not found in namelist.input. Using registry defaults for
> variables
>  in tc
>    ------ ERROR while reading namelist physics ------
>  Namelist scm not found in namelist.input. Using registry defaults for
> variables
>   in scm
>  Namelist fire not found in namelist.input. Using registry defaults for
> variable
>  s in fire
>  -------------- FATAL CALLED ---------------
>  FATAL CALLED FROM FILE:  <stdin>  LINE:    9094
>  ERRORS while reading one or more namelists from namelist.input.
>  -------------------------------------------
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0[unset]:
> aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>
> *
> Thanks in advance*
> *
>
> *-- *
> *************************************************************************
> *Regards,*
> *A.R.Ragi*
> *Research Scholar
> *
> *CAS, IIT Delhi*
>
> *************************************************************************
> *"I want to know how God created this world.
>  I am not interested in this or that phenomenon.
>  I want to know, his thought, the rest are details."
> ---Albert Einstein*
>
> *************************************************************************
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From FLiu at azmag.gov  Wed Jun  1 09:38:51 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Wed, 1 Jun 2011 15:38:51 +0000
Subject: [Wrf-users] read_wrf_nc.f error
In-Reply-To: <BANLkTinNJ0ar+fhmX_sfpvs2Ub94TPkJ0Q@mail.gmail.com>
References: <BANLkTimRJRrFcQG0Rb8P-+ECBAEpd0scKw@mail.gmail.com>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C25770BF7@mag9006>
	<BANLkTim0yV2AhraDXpvL-kAJEXniTg+NAQ@mail.gmail.com>
	<9BDE2A7F9712AF45A0C08451B3CD8E5C25771E73@mag9006>
	<BANLkTinNJ0ar+fhmX_sfpvs2Ub94TPkJ0Q@mail.gmail.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C25771FD1@mag9006>

Check your input files 'met_em.d0*' from WPS and see if they are available for the last day. The easy way to check that is to see if the met_em.d0* file has the same size as previous days. I noticed that the interval of your input data is 24 hours, daily. Thanks.
Feng

From: Ehsan Beigi [mailto:ebeigi3 at tigers.lsu.edu]
Sent: Tuesday, May 31, 2011 8:00 PM
To: Feng Liu
Cc: wrfhelp; wrf-users at ucar.edu
Subject: Re: [Wrf-users] read_wrf_nc.f error

Thanks for your previous help. I tried to run WRF for diffent days by changing the namelist.input , and WRF ran was ok for all of the days except the last day. and everytime i encountered this error, i really appreciate your help in advance



Timing for main: time 2011-04-10_00:00:00 on domain   3:    0.79400 elapsed seconds.
Timing for Writing wrfout_d03_2011-04-10_00:00:00 for domain        3:    0.06420 elapsed seconds.
Timing for main: time 2011-04-10_00:00:00 on domain   2:    3.06700 elapsed seconds.
Timing for Writing wrfout_d02_2011-04-10_00:00:00 for domain        2:    0.03080 elapsed seconds.
Timing for main: time 2011-04-10_00:00:00 on domain   1:    9.21270 elapsed seconds.
Timing for Writing wrfout_d01_2011-04-10_00:00:00 for domain        1:    0.02410 elapsed seconds.
            2 input_wrf: wrf_get_next_time current_date: 2011-04-10_00:00:00 Sta
 tus =           -4
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:     705
   ... May have run out of valid boundary conditions in file wrfbdy_d01

Best Regards

Ehsan Beigi


On Tue, May 31, 2011 at 6:41 PM, Feng Liu <FLiu at azmag.gov<mailto:FLiu at azmag.gov>> wrote:
It sounds good. If you need to extract one variable (VAR) in entire domain, you can use read_wrf_nc -w VAR, if your need a time series of VAR in a specific location you may use
Read_wrf_nc  -ts  xy X Y VAR -lev 1 wrfout_d*.nc
You can get the basic application information about the program by read_wrf_nc -help.

Use shell programming to process multiple day runs.

Hope it is helpful
Feng


From: Ehsan Beigi [mailto:ebeigi3 at tigers.lsu.edu<mailto:ebeigi3 at tigers.lsu.edu>]
Sent: Tuesday, May 31, 2011 3:18 PM
To: Feng Liu
Subject: Re: [Wrf-users] read_wrf_nc.f error

Thanks very much for you help. it worked!!!
do you recommend me to use other software for reading wrfout, for example MATLAB netcdf toolbox?

I ran the WRF for 30 days, now i don't know how i can  extract numbers of some variables for example Precipitation and Temperature for all grid for 30days among all of output?as you know there are many variables as output, i need to make time series of Precipitation and Temperature

Best Regards




Ehsan Beigi
On Tue, May 31, 2011 at 12:07 PM, Feng Liu <FLiu at azmag.gov<mailto:FLiu at azmag.gov>> wrote:
Hi,
I think you failed to compile the program successfully due to incomplete flags. I wonder how did you compile this program?  If you are using Portland Group PGF90, for example, you may compile the program by:
pgf90 read_wrf_nc.f -L/path_of_your_netCDF_lib -lnetcdf -lm  -I/path_of_your_netCDF_include  -Mfree  -o read_wrf_nc

Hope this is helpful.
Thanks.

From: wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu> [mailto:wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu>] On Behalf Of Ehsan Beigi
Sent: Monday, May 30, 2011 5:34 PM
To: wrfhelp
Cc: wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>
Subject: [Wrf-users] read_wrf_nc.f error

Dear Sir/Madam,

Thanks  for your previous help. I am trying to use read_wrf_nc.f for extracting my desire vaiables from wrf output files. i can see data inside me_em..nc* files, but i can not see the output  of wrf (wrfout.do1...), and this is my error message

/read_wrf_nc.f: line 1: Special: command not found
information: cannot open `information' (No such file or directory)
on:          cannot open `on' (No such file or directory)
the:         cannot open `the' (No such file or directory)
screen:      cannot open `screen' (No such file or directory)
./read_wrf_nc.f: line 3: Can: command not found
./read_wrf_nc.f: line 4: syntax error near unexpected token `('
./read_wrf_nc.f: line 4: `!  Can read double precision file (like WRF-Var)'

how can i extract some desired variables from wrfout files. i don't care about maps, i just need numbers. i really appreciate your help
On Fri, May 27, 2011 at 10:09 PM, wrfhelp <wrfhelp at ucar.edu<mailto:wrfhelp at ucar.edu>> wrote:
Yes, they are, unless you change them in the namelist.wps file. It should not change when you change stand_lon.
But you might want to change them if latitude 30 or 60 are not in your domain.

wrfhelp


On May 27, 2011, at 10:00 AM, Ehsan Beigi wrote:
Dear Sir/Madam,
Thanks for your previous help.  is truelat1  =  30.0, and  truelat2  =  60.0 in Lambert projection is always the same for every domain? how about  stand_lon = -98.0? if they are different for each domain, how can i calculate them for my domain?

Best Regards

Ehsan Beigi

wrfhelp
http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html



--
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803



--
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803



--
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803

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From mmkamal at uwaterloo.ca  Wed Jun  1 19:48:36 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Wed, 01 Jun 2011 21:48:36 -0400
Subject: [Wrf-users] Changing land use
In-Reply-To: <BANLkTik6Vxwzdudhub2bnTkw5VYiXD-arw@mail.gmail.com>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
	<4DDFC1AE.4030401@noaa.gov>
	<BANLkTikf2VAd5sjkciGNnCHTQiqWPdF1Cg@mail.gmail.com>
	<BC579A123F09274394CDDC116A04C50201E78561F3@DCPEXMBX01.conwag.com>
	<20110531175008.75424udz5aeaasu8@www.nexusmail.uwaterloo.ca>
	<BANLkTik6Vxwzdudhub2bnTkw5VYiXD-arw@mail.gmail.com>
Message-ID: <20110601214836.164529r7glp709no@www.nexusmail.uwaterloo.ca>

Hi Hameed,


I am sorry that I forget to include the link of R package. Here you go  
the links:

http://www.r-project.org/

How to read binary data using R:

http://www.ats.ucla.edu/stat/r/faq/read_binary.htm

To write binary data :

http://www.ats.ucla.edu/stat/r/faq/write_binary_bycolumn.htm

Hope the above link will help you.

Thanks
Kamal







Quoting Saji Hameed <saji at u-aizu.ac.jp>:

> I guess NCL also can be used to modify both the netcdf files (geogrid*.nc)
> or the binary source files that geogrid.exe uses...
>
> saji
>
> On Wed, Jun 1, 2011 at 6:50 AM, <mmkamal at uwaterloo.ca> wrote:
>
>> Hi Hamed,
>>
>> I am currently working on some land use sensitivity experiment and I
>> used an open source statistical package called "R" to read the land
>> use binary data (inside the geog directory of the data set). Using R I
>> am able to read the data set, then modified some category in my area
>> of interest and save the modification. Finally, I fed the model with
>> the modified data set and find that it does work properly. You can get
>> more detail about "R" in the following link. Or simply make google
>> search "read/write binary data using R".
>>
>>
>> Thanks
>> Kamal
>>
>>
>>
>>
>>
>>
>>
>> Quoting Mikhail Titov <TitovM at ap.aurecongroup.com>:
>>
>> > Hi,
>> >
>> > I have a program written on C that transforms any input terrestrial
>> > ASCII code file (topo, land-use and so on) in WPS binary format:
>> > 'rd_wr_binary.exe'.
>> > It is written on C as Fortran always leaves empty bits between 2
>> > lines that is not appropriate. This program is 2-direction one and
>> > can be used to check
>> > binary input terrestrial files transforming them in ASCII code. The
>> > program is very flexible and easily can be changed and re-compiled.
>> >
>> > Of cause after preparation of our own terrestrial files I create new
>> > subdirectory (with tiles) and 'index' file in 'geog' and edit
>> > "GEOGRID.TBL" in
>> > ' WPS/geogrid/' sub-directory to create several pointers on new
>> > terrestrial files and to choose an appropriate' interp_option'.
>> >
>> > We use to create our own terrain and land-use files (using special
>> > statistical methods and GIS) all the time for fine resolution WRF runs
>> > (1000 - 500m) to study wind resources for different on-shore and
>> > off-shore sites. USGS 2m - 30s terrestrial data is too coarse and
>> > very often is a crap.
>> >
>> > Regards,
>> >
>> ________________________________________________________________________________
>> >
>> > Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
>> > Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955
>> > | Mob: +64 21 106 5563
>> > Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
>> > Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
>> > PO Box 1061
>> > http://www.aurecongroup.com<http://www.aurecongroup.com/>
>> > http://www.aurecongroup.com/apac/groupentity/
>> >
>> _________________________________________________________________________________
>> >
>> > Please consider your environment before printing this e-mail.
>> >
>> > From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu]
>> > On Behalf Of Jorge Alejandro Arevalo Borquez
>> > Sent: Wednesday, 1 June 2011 3:48 a.m.
>> > To: Matt Foster
>> > Cc: wrf-users at ucar.edu
>> > Subject: Re: [Wrf-users] Changing land use
>> >
>> > Hi,
>> > other option is modify the binary files of some existing landuse
>> > (modis or usgs), matlab read and write those files whit almost no
>> > problem.
>> >
>> > Atentamente
>> > Jorge Ar?valo B?rquez
>> >
>> > On Fri, May 27, 2011 at 11:22 AM, Matt Foster
>> > <Matthew.Foster at noaa.gov<mailto:Matthew.Foster at noaa.gov>> wrote:
>> > Hamed,
>> >
>> > We have done experiments here in the past, where we modified the
>> > greeness fraction based on data from polar-orbiting satellites. We
>> > simply modified the geo_em NetCDF file, and it worked well. You
>> > should be able to take the same approach with land use.
>> >
>> > Matt
>> >
>> >
>> >
>> > On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
>> > Dear All,
>> > I want to change some values of my landuse in order to see how it
>> > affects the whole domain. For example,
>> > change part of the landuse to Forest or Lack.
>> > Does anyone know about this issue?
>> > Thanks in advance,
>> >
>> > Hamed Sharifi,
>> > M.Sc Student, AUT Tehran/Iran
>> > |hamed319 at yahoo.com<mailto:hamed319 at yahoo.com> |
>> > +98-9364024805<tel:%2B98-9364024805> |
>> > hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |
>> >
>> >
>> >
>> > _______________________________________________
>> >
>> > Wrf-users mailing list
>> >
>> > Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
>> >
>> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
>> >
>> >
>> >
>> > --
>> >
>> > Do not go where the path may lead; go instead where there is no path
>> > and leave a trail.
>> >
>> > -- Ralph Waldo Emerson
>> >
>> > _______________________________________________
>> > Wrf-users mailing list
>> > Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
>> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
>> >
>> >
>> > Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
>> >
>>
>>
>>
>>
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
>
>
>
> --
>
> Saji N Hameed,
> ARC-ENV, Center for Advanced Information Science and Technology,
> University of Aizu, Tsuruga, Ikki-machi,
> Aizuwakamatsu-shi, Fukushima 965-8580,
> Japan
>
> Tel: +81242 37-2736
> email: saji at u-aizu.ac.jp
> url: http://www.u-aizu.ac.jp
> bib: http://www.researcherid.com/rid/B-9188-2009
>





From rudra.shrestha at postgrad.manchester.ac.uk  Thu Jun  2 06:37:31 2011
From: rudra.shrestha at postgrad.manchester.ac.uk (Rudra Shrestha)
Date: Thu, 02 Jun 2011 13:37:31 +0100
Subject: [Wrf-users] Ensemble run
Message-ID: <1307018251.8039.16.camel@rudrasimona03.seaes.manchester.ac.uk>

Dear users,
I want to make ensemble run to investigate effect of aerosol and
temperature on rainfall. I can make change in the aerosol by changing
variables in the microphysics scheme (e.g. Morrison scheme) but don't
have very good idea how to make change in the temperature. I tried to
change in the potential temperature ('TT' variable in met_em* file)
using 'ncsave' function in Matlab. However there are significant number
of files and it is really time consuming while changing in the
individual met_em files. So I was wondering if there are any standard
method to make ensemble run in the wrf or make change variables in the
met_em* file. I am using NCEP2 data. 

Any help would be highly appreciated. 

Many Thanks,
Rudra


From saji at u-aizu.ac.jp  Wed Jun  1 18:56:47 2011
From: saji at u-aizu.ac.jp (Saji Hameed)
Date: Thu, 2 Jun 2011 09:56:47 +0900
Subject: [Wrf-users] Changing land use
In-Reply-To: <BC579A123F09274394CDDC116A04C50201E78561F3@DCPEXMBX01.conwag.com>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
	<4DDFC1AE.4030401@noaa.gov>
	<BANLkTikf2VAd5sjkciGNnCHTQiqWPdF1Cg@mail.gmail.com>
	<BC579A123F09274394CDDC116A04C50201E78561F3@DCPEXMBX01.conwag.com>
Message-ID: <BANLkTimKUeRtU2R5poYvXG9ws-pqdSYrwg@mail.gmail.com>

Hi Mikhail,

Can I have a copy of your C-program?

Thanks,
Saji

On Wed, Jun 1, 2011 at 6:05 AM, Mikhail Titov <TitovM at ap.aurecongroup.com>wrote:

>  Hi,
>
>
>
> I have a program written on C that transforms any input terrestrial ASCII
> code file (topo, land-use and so on) in WPS binary format:
> ?rd_wr_binary.exe?.
>
> It is written on C as Fortran always leaves empty bits between 2 lines that
> is not appropriate. This program is 2-direction one and can be used to check
>
> binary input terrestrial files transforming them in ASCII code. The program
> is very flexible and easily can be changed and re-compiled.
>
>
>
> Of cause after preparation of our own terrestrial files I create new
> subdirectory (with tiles) and ?index? file in ?geog? and edit ?GEOGRID.TBL?
> in
>
> ? WPS/geogrid/? sub-directory to create several pointers on new terrestrial
> files and to choose an appropriate? interp_option?.
>
>
>
> We use to create our own terrain and land-use files (using special
> statistical methods and GIS) all the time for fine resolution WRF runs
>
> (1000 ? 500m) to study wind resources for different on-shore and off-shore
> sites. USGS 2m ? 30s terrestrial data is too coarse and very often is a
> crap.
>
>
>
> Regards,
>
> *
> ________________________________________________________________________________
> *
>
> * *
>
> *Dr. Mikhail Titov **| Senior Prof. Officer, Energy* *|* Aurecon
>
> *Ph: *+64 3 366 08 21 ext.9231 DDI +64 367 32 31 *| **Fax:* +64 3 379 6955
> *|* *Mob:* +64 21 106 5563
>
> *Email: TitovM at ap.aurecongroup.com *
>
> Unit 1, 150 Cavendish Road *|* Christchurch 8051 *|* New Zealand
>
> PO Box 1061
>
> http://www.aurecongroup.com
>
> http://www.aurecongroup.com/apac/groupentity/
>
> *
> _________________________________________________________________________________
> *
>
>
>
> Please consider your environment before printing this e-mail.
>
>
>
> *From:* wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] *On
> Behalf Of *Jorge Alejandro Arevalo Borquez
> *Sent:* Wednesday, 1 June 2011 3:48 a.m.
> *To:* Matt Foster
> *Cc:* wrf-users at ucar.edu
> *Subject:* Re: [Wrf-users] Changing land use
>
>
>
> Hi,
> other option is modify the binary files of some existing landuse (modis or
> usgs), matlab read and write those files whit almost no problem.
>
> Atentamente
> Jorge Ar?valo B?rquez
>
>  On Fri, May 27, 2011 at 11:22 AM, Matt Foster <Matthew.Foster at noaa.gov>
> wrote:
>
> Hamed,
>
> We have done experiments here in the past, where we modified the greeness
> fraction based on data from polar-orbiting satellites.  We simply modified
> the geo_em NetCDF file, and it worked well.  You should be able to take the
> same approach with land use.
>
> Matt
>
>
>
>
> On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
>
>   Dear All,
>
> I want to change some values of my landuse in order to see how it affects
> the whole domain. For example,
>
> change part of the landuse to Forest or Lack.
>
> Does anyone know about this issue?
>
> Thanks in advance,
>
>
>
> Hamed Sharifi,
> M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com  |
> +98-9364024805                            | hamed_sharifi at aut.ac.ir |
>
>
>
> _______________________________________________
>
> Wrf-users mailing list
>
>  Wrf-users at ucar.edu
>
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
>
>  --
>
> Do not go where the path may lead; go instead where there is no path and leave a trail.
>
> -- Ralph Waldo Emerson
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
>
> Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 

Saji N Hameed,
ARC-ENV, Center for Advanced Information Science and Technology,
University of Aizu, Tsuruga, Ikki-machi,
Aizuwakamatsu-shi, Fukushima 965-8580,
Japan

Tel: +81242 37-2736
 email: saji at u-aizu.ac.jp
 url: http://www.u-aizu.ac.jp
 bib: http://www.researcherid.com/rid/B-9188-2009
-------------- next part --------------
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From saji at u-aizu.ac.jp  Wed Jun  1 18:58:05 2011
From: saji at u-aizu.ac.jp (Saji Hameed)
Date: Thu, 2 Jun 2011 09:58:05 +0900
Subject: [Wrf-users] Changing land use
In-Reply-To: <20110531175008.75424udz5aeaasu8@www.nexusmail.uwaterloo.ca>
References: <358161.27758.qm@web161215.mail.bf1.yahoo.com>
	<4DDFC1AE.4030401@noaa.gov>
	<BANLkTikf2VAd5sjkciGNnCHTQiqWPdF1Cg@mail.gmail.com>
	<BC579A123F09274394CDDC116A04C50201E78561F3@DCPEXMBX01.conwag.com>
	<20110531175008.75424udz5aeaasu8@www.nexusmail.uwaterloo.ca>
Message-ID: <BANLkTik6Vxwzdudhub2bnTkw5VYiXD-arw@mail.gmail.com>

I guess NCL also can be used to modify both the netcdf files (geogrid*.nc)
or the binary source files that geogrid.exe uses...

saji

On Wed, Jun 1, 2011 at 6:50 AM, <mmkamal at uwaterloo.ca> wrote:

> Hi Hamed,
>
> I am currently working on some land use sensitivity experiment and I
> used an open source statistical package called "R" to read the land
> use binary data (inside the geog directory of the data set). Using R I
> am able to read the data set, then modified some category in my area
> of interest and save the modification. Finally, I fed the model with
> the modified data set and find that it does work properly. You can get
> more detail about "R" in the following link. Or simply make google
> search "read/write binary data using R".
>
>
> Thanks
> Kamal
>
>
>
>
>
>
>
> Quoting Mikhail Titov <TitovM at ap.aurecongroup.com>:
>
> > Hi,
> >
> > I have a program written on C that transforms any input terrestrial
> > ASCII code file (topo, land-use and so on) in WPS binary format:
> > 'rd_wr_binary.exe'.
> > It is written on C as Fortran always leaves empty bits between 2
> > lines that is not appropriate. This program is 2-direction one and
> > can be used to check
> > binary input terrestrial files transforming them in ASCII code. The
> > program is very flexible and easily can be changed and re-compiled.
> >
> > Of cause after preparation of our own terrestrial files I create new
> > subdirectory (with tiles) and 'index' file in 'geog' and edit
> > "GEOGRID.TBL" in
> > ' WPS/geogrid/' sub-directory to create several pointers on new
> > terrestrial files and to choose an appropriate' interp_option'.
> >
> > We use to create our own terrain and land-use files (using special
> > statistical methods and GIS) all the time for fine resolution WRF runs
> > (1000 - 500m) to study wind resources for different on-shore and
> > off-shore sites. USGS 2m - 30s terrestrial data is too coarse and
> > very often is a crap.
> >
> > Regards,
> >
> ________________________________________________________________________________
> >
> > Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
> > Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955
> > | Mob: +64 21 106 5563
> > Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
> > Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
> > PO Box 1061
> > http://www.aurecongroup.com<http://www.aurecongroup.com/>
> > http://www.aurecongroup.com/apac/groupentity/
> >
> _________________________________________________________________________________
> >
> > Please consider your environment before printing this e-mail.
> >
> > From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu]
> > On Behalf Of Jorge Alejandro Arevalo Borquez
> > Sent: Wednesday, 1 June 2011 3:48 a.m.
> > To: Matt Foster
> > Cc: wrf-users at ucar.edu
> > Subject: Re: [Wrf-users] Changing land use
> >
> > Hi,
> > other option is modify the binary files of some existing landuse
> > (modis or usgs), matlab read and write those files whit almost no
> > problem.
> >
> > Atentamente
> > Jorge Ar?valo B?rquez
> >
> > On Fri, May 27, 2011 at 11:22 AM, Matt Foster
> > <Matthew.Foster at noaa.gov<mailto:Matthew.Foster at noaa.gov>> wrote:
> > Hamed,
> >
> > We have done experiments here in the past, where we modified the
> > greeness fraction based on data from polar-orbiting satellites. We
> > simply modified the geo_em NetCDF file, and it worked well. You
> > should be able to take the same approach with land use.
> >
> > Matt
> >
> >
> >
> > On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
> > Dear All,
> > I want to change some values of my landuse in order to see how it
> > affects the whole domain. For example,
> > change part of the landuse to Forest or Lack.
> > Does anyone know about this issue?
> > Thanks in advance,
> >
> > Hamed Sharifi,
> > M.Sc Student, AUT Tehran/Iran
> > |hamed319 at yahoo.com<mailto:hamed319 at yahoo.com> |
> > +98-9364024805<tel:%2B98-9364024805> |
> > hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |
> >
> >
> >
> > _______________________________________________
> >
> > Wrf-users mailing list
> >
> > Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
> >
> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
> >
> >
> >
> > --
> >
> > Do not go where the path may lead; go instead where there is no path
> > and leave a trail.
> >
> > -- Ralph Waldo Emerson
> >
> > _______________________________________________
> > Wrf-users mailing list
> > Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
> > http://mailman.ucar.edu/mailman/listinfo/wrf-users
> >
> >
> > Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
> >
>
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 

Saji N Hameed,
ARC-ENV, Center for Advanced Information Science and Technology,
University of Aizu, Tsuruga, Ikki-machi,
Aizuwakamatsu-shi, Fukushima 965-8580,
Japan

Tel: +81242 37-2736
 email: saji at u-aizu.ac.jp
 url: http://www.u-aizu.ac.jp
 bib: http://www.researcherid.com/rid/B-9188-2009
-------------- next part --------------
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From TitovM at ap.aurecongroup.com  Thu Jun  2 16:37:52 2011
From: TitovM at ap.aurecongroup.com (Mikhail Titov)
Date: Fri, 3 Jun 2011 08:37:52 +1000
Subject: [Wrf-users] Topo and land use ASCII - netCDF transformation program
Message-ID: <BC579A123F09274394CDDC116A04C50201E78E7ED1@DCPEXMBX01.conwag.com>


Hello All Users,

As there was some interest regarding the program to transform ASCII terrain and land-use in WRF format I would like to send  all 3 subroutines to everyone who will need it.
Just follow the instructions below and in 'README'. I working on SGI cluster use as input ASCII file format F7.1 but this is flexible and can be changed in the procedure.
The program is two way and you can check your binary files applying reverse transformation. Please let me know if you improve the transformation procedure.

Good luck and kind regards,
Mikhail


Find attached the program itself 'rd_wr_formatted' (executable and Fortran code) and two C subroutines: to read ('read_geogrid.c') and to write ('write_geogrid.c').
Also I attached README as every computer has its niceties. All additional instructions you will find in 'rd_wr.formatted.f90' itself. The program works with formatted ASCII input files
prepared using Statistica, TextPad or any piece of code. I work on SGI and use Linux Red Hat.

Good luck,
Mikhail

________________________________________________________________________________

Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955 | Mob: +64 21 106 5563
Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
PO Box 1061
http://www.aurecongroup.com<http://www.aurecongroup.com/>
http://www.aurecongroup.com/apac/groupentity/
_________________________________________________________________________________

Please consider your environment before printing this e-mail.

From: Feng Liu [mailto:FLiu at azmag.gov]
Sent: Wednesday, 1 June 2011 10:01 a.m.
To: Mikhail Titov
Subject: RE: [Wrf-users] Changing land use

Hi Mikhail,
It is highly appreciated if you could share your program with us. Thanks.
Feng


From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Mikhail Titov
Sent: Tuesday, May 31, 2011 2:06 PM
To: Jorge Alejandro Arevalo Borquez; Matt Foster
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Changing land use

Hi,

I have a program written on C that transforms any input terrestrial ASCII code file (topo, land-use and so on) in WPS binary format: 'rd_wr_binary.exe'.
It is written on C as Fortran always leaves empty bits between 2 lines that is not appropriate. This program is 2-direction one and can be used to check
binary input terrestrial files transforming them in ASCII code. The program is very flexible and easily can be changed and re-compiled.

Of cause after preparation of our own terrestrial files I create new subdirectory (with tiles) and 'index' file in 'geog' and edit "GEOGRID.TBL" in
' WPS/geogrid/' sub-directory to create several pointers on new terrestrial files and to choose an appropriate' interp_option'.

We use to create our own terrain and land-use files (using special statistical methods and GIS) all the time for fine resolution WRF runs
(1000 - 500m) to study wind resources for different on-shore and off-shore sites. USGS 2m - 30s terrestrial data is too coarse and very often is a crap.

Regards,
________________________________________________________________________________

Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955 | Mob: +64 21 106 5563
Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
PO Box 1061
http://www.aurecongroup.com<http://www.aurecongroup.com/>
http://www.aurecongroup.com/apac/groupentity/
_________________________________________________________________________________

Please consider your environment before printing this e-mail.

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jorge Alejandro Arevalo Borquez
Sent: Wednesday, 1 June 2011 3:48 a.m.
To: Matt Foster
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Changing land use

Hi,
other option is modify the binary files of some existing landuse (modis or usgs), matlab read and write those files whit almost no problem.

Atentamente
Jorge Ar?valo B?rquez
On Fri, May 27, 2011 at 11:22 AM, Matt Foster <Matthew.Foster at noaa.gov<mailto:Matthew.Foster at noaa.gov>> wrote:
Hamed,

We have done experiments here in the past, where we modified the greeness fraction based on data from polar-orbiting satellites.  We simply modified the geo_em NetCDF file, and it worked well.  You should be able to take the same approach with land use.

Matt



On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
Dear All,
I want to change some values of my landuse in order to see how it affects the whole domain. For example,
change part of the landuse to Forest or Lack.
Does anyone know about this issue?
Thanks in advance,

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com<mailto:hamed319 at yahoo.com>  |
+98-9364024805<tel:%2B98-9364024805>                            | hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |



_______________________________________________

Wrf-users mailing list

Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>

http://mailman.ucar.edu/mailman/listinfo/wrf-users


--

Do not go where the path may lead; go instead where there is no path and leave a trail.

-- Ralph Waldo Emerson

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users


Disclaimer - http://www.aurecongroup.com/apac/disclaimer/

Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
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From TitovM at ap.aurecongroup.com  Thu Jun  2 18:06:11 2011
From: TitovM at ap.aurecongroup.com (Mikhail Titov)
Date: Fri, 3 Jun 2011 10:06:11 +1000
Subject: [Wrf-users] Topo and land use ASCII - netCDF transformation program
Message-ID: <BC579A123F09274394CDDC116A04C50201E78E816E@DCPEXMBX01.conwag.com>

Hello,

As there was some interest regarding the program to transform ASCII terrain and land-use in WRF format I would like to send  all 3 subroutines to everyone who will need it.
Just follow the instructions below and in 'README'. I working on SGI cluster use as input ASCII file format F7.1 but this is flexible and can be changed in the procedure.
The program is two way and you can check your binary files applying reverse transformation. Please let me know if you improve the transformation procedure.

Good luck and kind regards,
Mikhail


Find attached the program itself 'rd_wr_formatted' (executable and Fortran code) and two C subroutines: to read ('read_geogrid.c') and to write ('write_geogrid.c').
Also I attached README as every computer has its niceties. All additional instructions you will find in 'rd_wr.formatted.f90' itself. The program works with formatted ASCII input files
prepared using Statistica, TextPad or any piece of code. I work on SGI and use Linux Red Hat.

Good luck,
Mikhail

________________________________________________________________________________

Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955 | Mob: +64 21 106 5563
Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
PO Box 1061
http://www.aurecongroup.com<http://www.aurecongroup.com/>
http://www.aurecongroup.com/apac/groupentity/
_________________________________________________________________________________

Please consider your environment before printing this e-mail.

From: Feng Liu [mailto:FLiu at azmag.gov]
Sent: Wednesday, 1 June 2011 10:01 a.m.
To: Mikhail Titov
Subject: RE: [Wrf-users] Changing land use

Hi Mikhail,
It is highly appreciated if you could share your program with us. Thanks.
Feng


From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Mikhail Titov
Sent: Tuesday, May 31, 2011 2:06 PM
To: Jorge Alejandro Arevalo Borquez; Matt Foster
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Changing land use

Hi,

I have a program written on C that transforms any input terrestrial ASCII code file (topo, land-use and so on) in WPS binary format: 'rd_wr_binary.exe'.
It is written on C as Fortran always leaves empty bits between 2 lines that is not appropriate. This program is 2-direction one and can be used to check
binary input terrestrial files transforming them in ASCII code. The program is very flexible and easily can be changed and re-compiled.

Of cause after preparation of our own terrestrial files I create new subdirectory (with tiles) and 'index' file in 'geog' and edit "GEOGRID.TBL" in
' WPS/geogrid/' sub-directory to create several pointers on new terrestrial files and to choose an appropriate' interp_option'.

We use to create our own terrain and land-use files (using special statistical methods and GIS) all the time for fine resolution WRF runs
(1000 - 500m) to study wind resources for different on-shore and off-shore sites. USGS 2m - 30s terrestrial data is too coarse and very often is a crap.

Regards,
________________________________________________________________________________

Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955 | Mob: +64 21 106 5563
Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
PO Box 1061
http://www.aurecongroup.com<http://www.aurecongroup.com/>
http://www.aurecongroup.com/apac/groupentity/
_________________________________________________________________________________

Please consider your environment before printing this e-mail.

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jorge Alejandro Arevalo Borquez
Sent: Wednesday, 1 June 2011 3:48 a.m.
To: Matt Foster
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Changing land use

Hi,
other option is modify the binary files of some existing landuse (modis or usgs), matlab read and write those files whit almost no problem.

Atentamente
Jorge Ar?valo B?rquez
On Fri, May 27, 2011 at 11:22 AM, Matt Foster <Matthew.Foster at noaa.gov<mailto:Matthew.Foster at noaa.gov>> wrote:
Hamed,

We have done experiments here in the past, where we modified the greeness fraction based on data from polar-orbiting satellites.  We simply modified the geo_em NetCDF file, and it worked well.  You should be able to take the same approach with land use.

Matt



On 5/22/2011 6:06 AM, Hamed Sharifi wrote:
Dear All,
I want to change some values of my landuse in order to see how it affects the whole domain. For example,
change part of the landuse to Forest or Lack.
Does anyone know about this issue?
Thanks in advance,

Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran      |hamed319 at yahoo.com<mailto:hamed319 at yahoo.com>  |
+98-9364024805<tel:%2B98-9364024805>                            | hamed_sharifi at aut.ac.ir<mailto:hamed_sharifi at aut.ac.ir> |



_______________________________________________

Wrf-users mailing list

Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>

http://mailman.ucar.edu/mailman/listinfo/wrf-users


--

Do not go where the path may lead; go instead where there is no path and leave a trail.

-- Ralph Waldo Emerson

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users


Disclaimer - http://www.aurecongroup.com/apac/disclaimer/

Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
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From aruny at iitk.ac.in  Fri Jun  3 03:43:47 2011
From: aruny at iitk.ac.in (Arun)
Date: Fri, 03 Jun 2011 15:13:47 +0530
Subject: [Wrf-users] Internal compiler error while compiling Wrf/chem
Message-ID: <4DE8ACD3.5010903@iitk.ac.in>

Hi,
  I'm trying to compile WRF/Chem with KPP turned off. But I'm getting 
this internal compiler error while doing so. I'm attaching my log file 
along with this mail. Any help/suggestion will be highly appreciated.
I have no clue about how to move forward from here. The first error is 
following:

module_ra_gsfcsw.f90:1090: internal compiler error: in emit_move_insn_1, 
at expr.c:3251
Please submit a full bug report,
with preprocessed source if appropriate.
See <URL:http://gcc.gnu.org/bugs.html> for instructions.
make[3]: [module_ra_gsfcsw.o] Error 1 (ignored)

Other errors which occur after this are because of this error only, as 
far as I can tell.


Regards,
Arun

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From saji at u-aizu.ac.jp  Thu Jun  2 20:13:43 2011
From: saji at u-aizu.ac.jp (Saji Hameed)
Date: Fri, 3 Jun 2011 11:13:43 +0900
Subject: [Wrf-users] Ensemble run
In-Reply-To: <1307018251.8039.16.camel@rudrasimona03.seaes.manchester.ac.uk>
References: <1307018251.8039.16.camel@rudrasimona03.seaes.manchester.ac.uk>
Message-ID: <BANLkTik8k6UPaby9U2GVqnyag=dqPVzWUQ@mail.gmail.com>

I am not very sure about it, but DART may contain utilities to help create
ensembles (disclaimer: i have not yet used DART)
http://www.image.ucar.edu/DAReS/DART/

saji

On Thu, Jun 2, 2011 at 9:37 PM, Rudra Shrestha <
rudra.shrestha at postgrad.manchester.ac.uk> wrote:

> Dear users,
> I want to make ensemble run to investigate effect of aerosol and
> temperature on rainfall. I can make change in the aerosol by changing
> variables in the microphysics scheme (e.g. Morrison scheme) but don't
> have very good idea how to make change in the temperature. I tried to
> change in the potential temperature ('TT' variable in met_em* file)
> using 'ncsave' function in Matlab. However there are significant number
> of files and it is really time consuming while changing in the
> individual met_em files. So I was wondering if there are any standard
> method to make ensemble run in the wrf or make change variables in the
> met_em* file. I am using NCEP2 data.
>
> Any help would be highly appreciated.
>
> Many Thanks,
> Rudra
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>



-- 

Saji N Hameed,
ARC-ENV, Center for Advanced Information Science and Technology,
University of Aizu, Tsuruga, Ikki-machi,
Aizuwakamatsu-shi, Fukushima 965-8580,
Japan

Tel: +81242 37-2736
 email: saji at u-aizu.ac.jp
 url: http://www.u-aizu.ac.jp
 bib: http://www.researcherid.com/rid/B-9188-2009
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From TitovM at ap.aurecongroup.com  Tue Jun  7 16:18:13 2011
From: TitovM at ap.aurecongroup.com (Mikhail Titov)
Date: Wed, 8 Jun 2011 08:18:13 +1000
Subject: [Wrf-users] Topo and land use ASCII - netCDF transformation -
	Make file
In-Reply-To: <BANLkTi=cVoJ_zVnBnKERbn98QMXuW2xsLw@mail.gmail.com>
References: <BANLkTikBhb9iQ2vDxQLe+HXMc55Kby13Cg@mail.gmail.com>
	<BC579A123F09274394CDDC116A04C50201E78E8949@DCPEXMBX01.conwag.com>
	<BANLkTin26bJ3vbJV1umXr3ZJjBCimTmHqA@mail.gmail.com>
	<BANLkTin65F24GSERCkcxoCbP4ixYzH75-g@mail.gmail.com>
	<BANLkTi=cVoJ_zVnBnKERbn98QMXuW2xsLw@mail.gmail.com>
Message-ID: <BC579A123F09274394CDDC116A04C50201E79E04B6@DCPEXMBX01.conwag.com>

Hi Ehsan,

Sorry I didn't send you and other users who were interested in local terrestrial files transformation 'Makefile'
to compile 'rd_wr_formatted.f90". Please don't remove # in "write_geogrid.c" and  "read_geogrid.c".
Edit  and use 'Makefile' to compile the program. Just correct FC, CC and flags in 'Makefie'.

I use pgf90 and you as I can see use 'ifort'. If you want to swap real on integer input you easily can do it editting
'Makefile' and use integer land-use categories as input.

Good luck,
Mikhail

NB I don't have any other software to transform ASCII input in binary files.
________________________________________________________________________________

Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955 | Mob: +64 21 106 5563
Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
PO Box 1061
http://www.aurecongroup.com<http://www.aurecongroup.com/>
http://www.aurecongroup.com/apac/groupentity/
_________________________________________________________________________________

Please consider your environment before printing this e-mail.



From: Ehsan Beigi [mailto:ebeigi3 at tigers.lsu.edu]
Sent: Tuesday, 7 June 2011 8:35 a.m.
To: Mikhail Titov
Subject: Re: Topo and land use ASCII - netCDF transformation

thanks for your previous help. i remove the # in write_geogrid.c and  read_geogrid.cfrom at the start of these lines to make it compatible with compilers by looking at configure.wps
ifdef _UNDERSCORE
define read_geogrid read_geogrid_
endif

and then i use this command to compile the rd_wr_formatted.f90 code, is it correct :

CC=icc FC=ifort ifort rd_wr_formatted.f90 -L/home/ehsan/Documents/Netcdf/4.1/lib -lnetcdf -lm  \-I/home/ehsan/Documents/Netcdf/4.1/include -free  -o rd_wr_formatted.f90

after type it  in command line , it gives me :

rd_wr_formatted.f90(25): error #6423: This name has already been used as an external function name.   [IARGC]
   if (iargc /= 1) then
-------^
rd_wr_formatted.f90(25): error #8497: Illegal use of a procedure name in an expression, possibly a function call missing parenthesis.   [IARGC]
   if (iargc /= 1) then
-------^
compilation aborted for rd_wr_formatted.f90 (code 1)


CC=icc FC=ifort ifort rd_wr_formatted.f90 -L/home/ehsan/Documents/Netcdf/4.1/lib -lnetcdf -lm  \-I/home/ehsan/Documents/Netcdf/4.1/include -free  -o rd_wr_formatted.f90
rd_wr_formatted.f90(25): error #6423: This name has already been used as an external function name.   [IARGC]
   if (iargc /= 1) then
-------^
rd_wr_formatted.f90(25): error #8497: Illegal use of a procedure name in an expression, possibly a function call missing parenthesis.   [IARGC]
   if (iargc /= 1) then
-------^
compilation aborted for rd_wr_formatted.f90 (code 1)



What should i do ?

Best Regards,

Ehsan Beigi


Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
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From TitovM at ap.aurecongroup.com  Tue Jun  7 16:22:25 2011
From: TitovM at ap.aurecongroup.com (Mikhail Titov)
Date: Wed, 8 Jun 2011 08:22:25 +1000
Subject: [Wrf-users] Topo and land use ASCII - netCDF transformation
	-	Make file
In-Reply-To: <BC579A123F09274394CDDC116A04C50201E79E04B6@DCPEXMBX01.conwag.com>
References: <BANLkTikBhb9iQ2vDxQLe+HXMc55Kby13Cg@mail.gmail.com>
	<BC579A123F09274394CDDC116A04C50201E78E8949@DCPEXMBX01.conwag.com>
	<BANLkTin26bJ3vbJV1umXr3ZJjBCimTmHqA@mail.gmail.com>
	<BANLkTin65F24GSERCkcxoCbP4ixYzH75-g@mail.gmail.com>
	<BANLkTi=cVoJ_zVnBnKERbn98QMXuW2xsLw@mail.gmail.com>
	<BC579A123F09274394CDDC116A04C50201E79E04B6@DCPEXMBX01.conwag.com>
Message-ID: <BC579A123F09274394CDDC116A04C50201E79E04D6@DCPEXMBX01.conwag.com>

It looks like I forgot to attach the file - sorry.

Mikhail

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Mikhail Titov
Sent: Wednesday, 8 June 2011 10:18 a.m.
To: Ehsan Beigi
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] Topo and land use ASCII - netCDF transformation - Make file

Hi Ehsan,

Sorry I didn't send you and other users who were interested in local terrestrial files transformation 'Makefile'
to compile 'rd_wr_formatted.f90". Please don't remove # in "write_geogrid.c" and  "read_geogrid.c".
Edit  and use 'Makefile' to compile the program. Just correct FC, CC and flags in 'Makefie'.

I use pgf90 and you as I can see use 'ifort'. If you want to swap real on integer input you easily can do it editting
'Makefile' and use integer land-use categories as input.

Good luck,
Mikhail

NB I don't have any other software to transform ASCII input in binary files.
________________________________________________________________________________

Dr. Mikhail Titov | Senior Prof. Officer, Energy | Aurecon
Ph: +64 3 366 08 21 ext.9231 DDI +64 367 32 31 | Fax: +64 3 379 6955 | Mob: +64 21 106 5563
Email: TitovM at ap.aurecongroup.com<mailto:TitovM at ap.aurecongroup.com>
Unit 1, 150 Cavendish Road | Christchurch 8051 | New Zealand
PO Box 1061
http://www.aurecongroup.com<http://www.aurecongroup.com/>
http://www.aurecongroup.com/apac/groupentity/
_________________________________________________________________________________

Please consider your environment before printing this e-mail.



From: Ehsan Beigi [mailto:ebeigi3 at tigers.lsu.edu]
Sent: Tuesday, 7 June 2011 8:35 a.m.
To: Mikhail Titov
Subject: Re: Topo and land use ASCII - netCDF transformation

thanks for your previous help. i remove the # in write_geogrid.c and  read_geogrid.cfrom at the start of these lines to make it compatible with compilers by looking at configure.wps
ifdef _UNDERSCORE
define read_geogrid read_geogrid_
endif

and then i use this command to compile the rd_wr_formatted.f90 code, is it correct :

CC=icc FC=ifort ifort rd_wr_formatted.f90 -L/home/ehsan/Documents/Netcdf/4.1/lib -lnetcdf -lm  \-I/home/ehsan/Documents/Netcdf/4.1/include -free  -o rd_wr_formatted.f90

after type it  in command line , it gives me :

rd_wr_formatted.f90(25): error #6423: This name has already been used as an external function name.   [IARGC]
   if (iargc /= 1) then
-------^
rd_wr_formatted.f90(25): error #8497: Illegal use of a procedure name in an expression, possibly a function call missing parenthesis.   [IARGC]
   if (iargc /= 1) then
-------^
compilation aborted for rd_wr_formatted.f90 (code 1)


CC=icc FC=ifort ifort rd_wr_formatted.f90 -L/home/ehsan/Documents/Netcdf/4.1/lib -lnetcdf -lm  \-I/home/ehsan/Documents/Netcdf/4.1/include -free  -o rd_wr_formatted.f90
rd_wr_formatted.f90(25): error #6423: This name has already been used as an external function name.   [IARGC]
   if (iargc /= 1) then
-------^
rd_wr_formatted.f90(25): error #8497: Illegal use of a procedure name in an expression, possibly a function call missing parenthesis.   [IARGC]
   if (iargc /= 1) then
-------^
compilation aborted for rd_wr_formatted.f90 (code 1)



What should i do ?

Best Regards,

Ehsan Beigi

Disclaimer - http://www.aurecongroup.com/apac/disclaimer/

Disclaimer - http://www.aurecongroup.com/apac/disclaimer/
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From mkudsy at gmail.com  Tue Jun  7 20:21:07 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Wed, 8 Jun 2011 09:21:07 +0700
Subject: [Wrf-users] Titan Radar to WRF
Message-ID: <BANLkTik4bX5ku_Le9c1pvA9b2XMbOEusOQ@mail.gmail.com>

Hi,
We want to assimilate Titan Radar data to WRF for research purpose.
I appreciate very much any helps to convert the data to WRF readable format.
Many thanks,

-- 
Mahally Kudsy
Weather Modification Scientist
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From cak10c at fsu.edu  Wed Jun  8 14:27:49 2011
From: cak10c at fsu.edu (Chris Klich)
Date: Wed, 8 Jun 2011 16:27:49 -0400
Subject: [Wrf-users] Problem with three domains in WRF/WRF-Chem
Message-ID: <BANLkTi=RzqURPT2-v1G1wtXNZ8=T7kWWfg@mail.gmail.com>

Hi all, I am currently running WRF/WRF-Chem Version 3.2.1.  I have been able
to successfully run 2 domains, but running 3 has not seemed to work.  There
is no error in the rsl.error.0000 file, it just stops.  I have pasted the
rsl.error.0000 file below:

taskid: 0 hostname: sully.met.fsu.edu
 Namelist dfi_control not found in namelist.input. Using registry defaults
for variables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables in tc
 Namelist scm not found in namelist.input. Using registry defaults for
variables in scm
 Namelist fire not found in namelist.input. Using registry defaults for
variables in fire
  Ntasks in X             2 , ntasks in Y             4
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval = 0 for all domains
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval = 0 for all domains
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and
auxinput4_interval = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and
ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1,
setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging
interval and ending time to 0 for that domain.
 --- NOTE: grid_fdda is 0 for domain      2, setting gfdda interval and
ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      2,
setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      2, setting obs nudging
interval and ending time to 0 for that domain.
 --- NOTE: grid_fdda is 0 for domain      3, setting gfdda interval and
ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      3,
setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      3, setting obs nudging
interval and ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde             1          103            1          103
  ims,ime,jms,jme            -4           58           -4           33
  ips,ipe,jps,jpe             1           51            1           26
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
  alloc_space_field: domain             1 ,     198885272  bytes allocated
 med_initialdata_input: calling input_input
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov                             *
 *                                                                   *
 *********************************************************************
  *************************************
  Nesting domain
  ids,ide,jds,jde             1          211            1          211
  ims,ime,jms,jme            -4          117           -4           63
  ips,ipe,jps,jpe             1          105            1           53
  INTERMEDIATE domain
  ids,ide,jds,jde            13           88           13           88
  ims,ime,jms,jme             8           59            8           42
  ips,ipe,jps,jpe            11           49           11           32
  *************************************
  alloc_space_field: domain             2 ,     496635684  bytes allocated
 *** Initializing nest domain # 2 from an input file. ***
 med_initialdata_input: calling input_input
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov                             *
 *                                                                   *
 *********************************************************************
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov                             *
 *                                                                   *
 *********************************************************************
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov                             *
 *                                                                   *
 *********************************************************************
Timing for Writing wrfout_d01_2008-04-18_00:00:00 for domain        1:
8.69800 elapsed seconds.
  mediation_integrate: med_read_wrf_chem_emissions: Read emissions for time
2008-04-18_00:00:00
  mediation_integrate: med_read_wrf_chem_emissions: Open file
wrfchemi_d01_2008-04-18_00:00:00
Timing for processing lateral boundary for domain        1:    5.72800
elapsed seconds.
 WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS =   1
 WRF TILE   1 IS      1 IE     51 JS      1 JE     26
 WRF NUMBER OF TILES =   1
  *************************************
  Nesting domain
  ids,ide,jds,jde             1          151            1          151
  ims,ime,jms,jme            -4           87           -4           48
  ips,ipe,jps,jpe             1           75            1           38
  INTERMEDIATE domain
  ids,ide,jds,jde            73          128           38           93
  ims,ime,jms,jme            68          109           33           62
  ips,ipe,jps,jpe            71           99           36           52
  *************************************
  alloc_space_field: domain             3 ,     304724904  bytes allocated
 *** Initializing nest domain # 3 from an input file. ***
 med_initialdata_input: calling input_input
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES


You can see that it stops right after this step, and it looks like most of
my namelist is right, but I may be missing something.  I have also posted
the namelist.input below:


&time_control
run_days                            = 1,
run_hours                           = 0,
run_minutes                         = 0,
run_seconds                         = 0,
start_year                          = 2008, 2008, 2008,2008,2008,
start_month                         = 04,04,04,04,04,
start_day                           = 18,18,18,18,18,
start_hour                          = 00,00,00,00,00,
start_minute                        = 00,   00,   00, 00,00,
start_second                        = 00,   00,   00, 00,00,
end_year                            = 2008, 2008, 2008, 2008, 2008,
end_month                           = 04,04,04,04,04,
end_day                             = 19,19,19,19,19,
end_hour                            = 00,00,00,00,00,
end_minute                          = 00,   00,   00, 00,00,
end_second                          = 00,   00,   00, 00,00,
interval_seconds                    = 21600,
input_from_file                     = .true.,.true.,.true.,.true.,.true.,
fine_input_stream                   = 0, 0, 0, 0, 0,
history_interval                    = 60,60,60,60,60,
frames_per_outfile                  = 1,1,1,1,1,
restart                             = .false.,
restart_interval                    = 0,
io_form_history                     = 2,
io_form_restart                     = 2,
io_form_input                       = 2,
io_form_boundary                    = 2,
io_form_auxinput3                   = 2,
io_form_auxinput4                   = 2,
io_form_auxinput5                   = 2,
debug_level                         = 0,
auxinput5_interval                  = 2592000,
auxinput11_interval_s               = 180, 180, 180, 180, 180,
auxinput11_end_h                    = 6, 6, 6, 6, 6,
/

&domains
time_step                           = 270,
time_step_fract_num                 = 0,
time_step_fract_den                 = 1,
max_dom                             = 3,
s_we                                = 1,     1,     1,  1, 1,
e_we                                = 103,211,151,502,,
s_sn                                = 1,     1,     1,  1,1,
e_sn                                = 103,211,151,502,,
s_vert                              = 1,     1,     1,  1,1,
e_vert                              = 35,    35,   35, 35,35,
num_metgrid_levels                  = 27,
num_metgrid_soil_levels             = 4,
eta_levels                          = 1.000, 0.995, 0.98, 0.963,
0.95,0.9372, 0.9247, 0.9122, 0.9001, 0.888,0.8761, 0.8642, 0.8524, 0.84,
0.8322,0.817, 0.79, 0.76, 0.72, 0.68,0.63, 0.59, 0.54, 0.49, 0.435, 0.38,
0.335, 0.2886, 0.2504, 0.2119,0.1722, 0.1309, 0.0875, 0.0418, 0.000,
p_top_requested                     = 5000,
dx                                  = 45000,15000, 5000, , ,
dy                                  = 45000,15000, 5000, , ,
grid_id                             = 1,     2,     3, 4,5,
parent_id                           = 1,     1,     2, 3,4,
i_parent_start                      = 1,15,75,200,
j_parent_start                      = 1,15,40,130,
parent_grid_ratio                   = 1,3,3,3,3,
parent_time_step_ratio              = 1,3,3,3,3,
feedback                            = 1,
smooth_option                       = 0,
use_adaptive_time_step              = .true.,
step_to_output_time                 = .true.,
target_cfl                          = 1.2, 1.2, 1.2, 1.2, 1.2,
max_step_increase_pct               = 10, 10, 10, 10, 10,
starting_time_step                  = 270,
max_time_step                       = -1,
min_time_step                       = -1,
/

&physics
mp_physics                          = 2,  2,2,2,2,
ra_lw_physics                       = 1, 1, 1, 1, 1,
ra_sw_physics                       = 2, 2, 2, 2, 2,
radt                                = 10,10,10,10,10,
sf_sfclay_physics                   = 2, 2, 2, 2, 2,
sf_surface_physics                  = 2, 2, 2, 2, 2,
bl_pbl_physics                      = 2, 2, 2, 2, 2,
bldt                                = 0,0,0,0,0,
cu_physics                          = 1, 1,1,1,1,
cudt                                = 5,5,5,5,5,
isfflx                              = 1,
ifsnow                              = 1,
icloud                              = 1,
surface_input_source                = 1,
num_soil_layers                     = 4,
pxlsm_smois_init                    = 0,0,0,0,0,
mp_zero_out                         = 2,
sf_urban_physics                    = 1,
maxiens                             = 1,
maxens                              = 3,
maxens2                             = 3,
maxens3                             = 16,
ensdim                              = 144,
sst_update                          = 0,
cu_rad_feedback                     = .true.,
cugd_avedx                          = 1,
/

&fdda
obs_nudge_opt                       = 0,0,0,0,0
max_obs                             = 150000,
fdda_start                          =     0.,     0.,     0.,     0.,     0.
fdda_end                            = 99999., 99999., 99999., 99999., 99999.
obs_nudge_wind                      = 1,1,1,1,1
obs_coef_wind                       = 6.E-4,6.E-4,6.E-4,6.E-4,6.E-4
obs_nudge_temp                      = 1,1,1,1,1
obs_coef_temp                       = 6.E-4,6.E-4,6.E-4,6.E-4,6.E-4
obs_nudge_mois                      = 1,1,1,1,1
obs_coef_mois                       = 6.E-4,6.E-4,6.E-4,6.E-4,6.E-4
obs_rinxy                           = 240.,240.,180.,180,180
obs_rinsig                          = 0.1,
obs_twindo                          =
0.6666667,0.6666667,0.6666667,0.6666667,0.6666667,
obs_npfi                            = 10,
obs_ionf                            = 2, 2, 2, 2, 2,
obs_idynin                          = 0,
obs_dtramp                          = 40.,
obs_prt_freq                        = 10, 10, 10, 10, 10,
obs_prt_max                         = 10
obs_ipf_errob                       = .true.
obs_ipf_nudob                       = .true.
obs_ipf_in4dob                      = .true.
obs_ipf_init                        = .true.
/

&dynamics
rk_ord                              = 3,
w_damping                           = 0,
diff_opt                            = 1,
km_opt                              = 4,
diff_6th_opt                        = 0,0,0,0,0,
diff_6th_factor                     = 0.12,0.12,0.12,0.12,0.12,
damp_opt                            = 1,
base_temp                           = 290.,
zdamp                               = 5000.,  5000.,  5000., 5000.,5000.,
dampcoef                            = 0.01,   0.01,   0.01, 0.01, 0.01,
khdif                               = 0,      0,      0, 0,0,
kvdif                               = 0,      0,      0,0,0,
smdiv                               = 0.1,
emdiv                               = 0.01,
epssm                               = 0.1,
time_step_sound                     = 4,
h_mom_adv_order                     = 5,
v_mom_adv_order                     = 3,
h_sca_adv_order                     = 5,
v_sca_adv_order                     = 3,
non_hydrostatic                     = .true., .true., .true.,.true.,.true.,
moist_adv_opt                       = 2,      2,      2,
scalar_adv_opt                      = 2,      2,      2,
chem_adv_opt                        = 2,      2,      2,
/

&bdy_control
spec_bdy_width                      = 5,
spec_zone                           = 1,
relax_zone                          = 4,
specified                           = .true.,
.false.,.false.,.false.,.false.,
nested                              = .false., .true., .true.,.true.,.true.,
/

&grib2
/

&chem
kemit                               = 1,
chem_opt                            = 301, 301, 301,
bioemdt                             = 30,       30,       30,
photdt                              = 30,       30,       30,
chemdt                              = 270,270,270,
frames_per_emissfile                = 1,
io_style_emissions                  = 2,
emiss_inpt_opt                      = 1,        1,        1,
emiss_opt                           = 5,    5,    5,
chem_in_opt                         = 0,  0,  0,
phot_opt                            = 0,        0,        0,
gas_drydep_opt                      = 1,        1,        1,
bio_emiss_opt                       = 0,        0,        0,
dust_opt                            = 0,
dmsemis_opt                         = 0,
seas_opt                            = 0,
gas_bc_opt                          = 1,        1,        1,
gas_ic_opt                          = 1,        1,        1,
aer_bc_opt                          = 1,        1,        1,
aer_ic_opt                          = 1,        1,        1,
gaschem_onoff                       = 1,        1,        1,
aerchem_onoff                       = 1,        1,        1,
wetscav_onoff                       = 0,        0,        1,
cldchem_onoff                       = 0,        0,        1,
vertmix_onoff                       = 1,        1,        1,
chem_conv_tr                        = 1,        1,        1,
biomass_burn_opt                    = 0,  0,  0,
plumerisefire_frq                   = 270, 270, 270,
aer_ra_feedback                     = 0,        0,        0,
have_bcs_chem                       = .false., .false., .false.,
/

&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/



Any help would be greatly appreciated.  I am using self-made scripts for
most of the running process, but it hasn't caused any errors up until this
point.

Chris

-- 
Christopher Klich
Meteorology Graduate Student
Florida State University
(908) 208-9743
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From veiga.uea at gmail.com  Thu Jun  9 15:33:24 2011
From: veiga.uea at gmail.com (=?ISO-8859-1?Q?Jose_Augusto_Paix=E3o_Veiga?=)
Date: Thu, 9 Jun 2011 17:33:24 -0400
Subject: [Wrf-users] WRF Climate version
Message-ID: <BANLkTimcheG0npvorYY2i3aRgOZ9LH6Hjg@mail.gmail.com>

Dear all,

I usually  do short runs with WR-ARW model, i.e., 4-5 days  simulations of
weather events, but now I would like to run WRF for climate experiments.
Thus, I would like to know if someone knows if is there a climate version
for WRF model.

Thanks in advance,

Jos? Augusto P. Veiga,

======================================
Universidade do Estado do Amazonas
Departamento de Meteorologia
Escola Superior de Tecnologia (EST)
-----------------------------------------------------------------------------
Av. Darcy Vargas, 1200, Manaus-AM Brasil
Work phone:    (92) 3878 4333, Ramal 4333
Cell   phone :    (92) 8196 7122
Skype: veiga_j.a.p.
-----------------------------------------------------------------------------
CV: http://lattes.cnpq.br/4027612512091565
URL:http://scientificmet.wordpress.com/
-----------------------------------------------------------------------------
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From hamed319 at yahoo.com  Fri Jun 10 03:55:02 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Fri, 10 Jun 2011 02:55:02 -0700 (PDT)
Subject: [Wrf-users] rd_wr_formatted.f90 compiling with ifort and icc
Message-ID: <987173.33932.qm@web161204.mail.bf1.yahoo.com>

Dear WRF Users,
Is there anyone who compile "rd_wr_formatted.f90" with ifort&icc compiler?
I used FLAGS from configure.wps but the make file got me this error:
---------------------------------------------------------------------------------

ifort -c -FR -convert big_endian rd_wr_formatted.f90
rd_wr_formatted.f90(25): error #6423: This name has already been used as an external function name.?? [IARGC]
?? if (iargc /= 1) then
-------^
rd_wr_formatted.f90(25): error #8497: Illegal use of a procedure name in an expression, possibly a function call missing parenthesis.?? [IARGC]
?? if (iargc /= 1) then
-------^
compilation aborted for rd_wr_formatted.f90 (code 1)
make: *** [rd_wr_formatted.o] Error 1
---------------------------------------------------------------------------------
I'm looking forward for the answer.
Thanks in advance,

?
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From ebeigi3 at tigers.lsu.edu  Fri Jun 10 12:09:13 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Fri, 10 Jun 2011 14:09:13 -0400
Subject: [Wrf-users] Changing ASCII or binary format meteorological data to
	intermediate format
Message-ID: <BANLkTi=LriGSeuVOGmXO+mPHiMd5hq5NHA@mail.gmail.com>

Dear Sir/Madam,

I am going to ingest new meteorological dataset with ASCII and Binary
format, and as you may know, it is needed to write a code in order to
convert ASCII or Binary format to WPS intermediate format. Have any one done
it before?

I really appreciate your help in advance.

Kind Regards,


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From FLiu at azmag.gov  Fri Jun 10 16:10:22 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Fri, 10 Jun 2011 22:10:22 +0000
Subject: [Wrf-users] Problem with three domains in WRF/WRF-Chem
In-Reply-To: <BANLkTi=RzqURPT2-v1G1wtXNZ8=T7kWWfg@mail.gmail.com>
References: <BANLkTi=RzqURPT2-v1G1wtXNZ8=T7kWWfg@mail.gmail.com>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C257777B1@mag9006>

The resolution of nested domain (5-km) is higher than you ran 2 domains. So reduce your time step from 270 to 90 and try again. Please keep in mind it will be computationally expensive if works with this solution.  Thanks.
Feng

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Chris Klich
Sent: Wednesday, June 08, 2011 1:28 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] Problem with three domains in WRF/WRF-Chem

Hi all, I am currently running WRF/WRF-Chem Version 3.2.1.  I have been able to successfully run 2 domains, but running 3 has not seemed to work.  There is no error in the rsl.error.0000 file, it just stops.  I have pasted the rsl.error.0000 file below:

taskid: 0 hostname: sully.met.fsu.edu<http://sully.met.fsu.edu>
 Namelist dfi_control not found in namelist.input. Using registry defaults for variables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for variables in tc
 Namelist scm not found in namelist.input. Using registry defaults for variables in scm
 Namelist fire not found in namelist.input. Using registry defaults for variables in fire
  Ntasks in X             2 , ntasks in Y             4
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1, setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging interval and ending time to 0 for that domain.
 --- NOTE: grid_fdda is 0 for domain      2, setting gfdda interval and ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      2, setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      2, setting obs nudging interval and ending time to 0 for that domain.
 --- NOTE: grid_fdda is 0 for domain      3, setting gfdda interval and ending time to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      3, setting sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      3, setting obs nudging interval and ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 WRF V3.2.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde             1          103            1          103
  ims,ime,jms,jme            -4           58           -4           33
  ips,ipe,jps,jpe             1           51            1           26
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
  alloc_space_field: domain             1 ,     198885272  bytes allocated
 med_initialdata_input: calling input_input
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov<mailto:wrfchemhelp.gsd at noaa.gov>                             *
 *                                                                   *
 *********************************************************************
  *************************************
  Nesting domain
  ids,ide,jds,jde             1          211            1          211
  ims,ime,jms,jme            -4          117           -4           63
  ips,ipe,jps,jpe             1          105            1           53
  INTERMEDIATE domain
  ids,ide,jds,jde            13           88           13           88
  ims,ime,jms,jme             8           59            8           42
  ips,ipe,jps,jpe            11           49           11           32
  *************************************
  alloc_space_field: domain             2 ,     496635684  bytes allocated
 *** Initializing nest domain # 2 from an input file. ***
 med_initialdata_input: calling input_input
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov<mailto:wrfchemhelp.gsd at noaa.gov>                             *
 *                                                                   *
 *********************************************************************
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov<mailto:wrfchemhelp.gsd at noaa.gov>                             *
 *                                                                   *
 *********************************************************************
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES
 *********************************************************************
 *             PROGRAM: WRF/CHEM VERSION 3.1.1                       *
 *                                                                   *
 *    PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at                     *
 *                                                                   *
 *              wrfchemhelp.gsd at noaa.gov<mailto:wrfchemhelp.gsd at noaa.gov>                             *
 *                                                                   *
 *********************************************************************
Timing for Writing wrfout_d01_2008-04-18_00:00:00 for domain        1:    8.69800 elapsed seconds.
  mediation_integrate: med_read_wrf_chem_emissions: Read emissions for time 2008-04-18_00:00:00
  mediation_integrate: med_read_wrf_chem_emissions: Open file wrfchemi_d01_2008-04-18_00:00:00
Timing for processing lateral boundary for domain        1:    5.72800 elapsed seconds.
 WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS =   1
 WRF TILE   1 IS      1 IE     51 JS      1 JE     26
 WRF NUMBER OF TILES =   1
  *************************************
  Nesting domain
  ids,ide,jds,jde             1          151            1          151
  ims,ime,jms,jme            -4           87           -4           48
  ips,ipe,jps,jpe             1           75            1           38
  INTERMEDIATE domain
  ids,ide,jds,jde            73          128           38           93
  ims,ime,jms,jme            68          109           33           62
  ips,ipe,jps,jpe            71           99           36           52
  *************************************
  alloc_space_field: domain             3 ,     304724904  bytes allocated
 *** Initializing nest domain # 3 from an input file. ***
 med_initialdata_input: calling input_input
 INPUT LandUse = "USGS"
 INITIALIZE THREE Noah LSM RELATED TABLES
  LANDUSE TYPE = USGS FOUND           27  CATEGORIES
  INPUT SOIL TEXTURE CLASSIFICAION = STAS
  SOIL TEXTURE CLASSIFICATION = STAS FOUND           19  CATEGORIES


You can see that it stops right after this step, and it looks like most of my namelist is right, but I may be missing something.  I have also posted the namelist.input below:


&time_control
run_days                            = 1,
run_hours                           = 0,
run_minutes                         = 0,
run_seconds                         = 0,
start_year                          = 2008, 2008, 2008,2008,2008,
start_month                         = 04,04,04,04,04,
start_day                           = 18,18,18,18,18,
start_hour                          = 00,00,00,00,00,
start_minute                        = 00,   00,   00, 00,00,
start_second                        = 00,   00,   00, 00,00,
end_year                            = 2008, 2008, 2008, 2008, 2008,
end_month                           = 04,04,04,04,04,
end_day                             = 19,19,19,19,19,
end_hour                            = 00,00,00,00,00,
end_minute                          = 00,   00,   00, 00,00,
end_second                          = 00,   00,   00, 00,00,
interval_seconds                    = 21600,
input_from_file                     = .true.,.true.,.true.,.true.,.true.,
fine_input_stream                   = 0, 0, 0, 0, 0,
history_interval                    = 60,60,60,60,60,
frames_per_outfile                  = 1,1,1,1,1,
restart                             = .false.,
restart_interval                    = 0,
io_form_history                     = 2,
io_form_restart                     = 2,
io_form_input                       = 2,
io_form_boundary                    = 2,
io_form_auxinput3                   = 2,
io_form_auxinput4                   = 2,
io_form_auxinput5                   = 2,
debug_level                         = 0,
auxinput5_interval                  = 2592000,
auxinput11_interval_s               = 180, 180, 180, 180, 180,
auxinput11_end_h                    = 6, 6, 6, 6, 6,
/

&domains
time_step                           = 270,
time_step_fract_num                 = 0,
time_step_fract_den                 = 1,
max_dom                             = 3,
s_we                                = 1,     1,     1,  1, 1,
e_we                                = 103,211,151,502,,
s_sn                                = 1,     1,     1,  1,1,
e_sn                                = 103,211,151,502,,
s_vert                              = 1,     1,     1,  1,1,
e_vert                              = 35,    35,   35, 35,35,
num_metgrid_levels                  = 27,
num_metgrid_soil_levels             = 4,
eta_levels                          = 1.000, 0.995, 0.98, 0.963, 0.95,0.9372, 0.9247, 0.9122, 0.9001, 0.888,0.8761, 0.8642, 0.8524, 0.84, 0.8322,0.817, 0.79, 0.76, 0.72, 0.68,0.63, 0.59, 0.54, 0.49, 0.435, 0.38, 0.335, 0.2886, 0.2504, 0.2119,0.1722, 0.1309, 0.0875, 0.0418, 0.000,
p_top_requested                     = 5000,
dx                                  = 45000,15000, 5000, , ,
dy                                  = 45000,15000, 5000, , ,
grid_id                             = 1,     2,     3, 4,5,
parent_id                           = 1,     1,     2, 3,4,
i_parent_start                      = 1,15,75,200,
j_parent_start                      = 1,15,40,130,
parent_grid_ratio                   = 1,3,3,3,3,
parent_time_step_ratio              = 1,3,3,3,3,
feedback                            = 1,
smooth_option                       = 0,
use_adaptive_time_step              = .true.,
step_to_output_time                 = .true.,
target_cfl                          = 1.2, 1.2, 1.2, 1.2, 1.2,
max_step_increase_pct               = 10, 10, 10, 10, 10,
starting_time_step                  = 270,
max_time_step                       = -1,
min_time_step                       = -1,
/

&physics
mp_physics                          = 2,  2,2,2,2,
ra_lw_physics                       = 1, 1, 1, 1, 1,
ra_sw_physics                       = 2, 2, 2, 2, 2,
radt                                = 10,10,10,10,10,
sf_sfclay_physics                   = 2, 2, 2, 2, 2,
sf_surface_physics                  = 2, 2, 2, 2, 2,
bl_pbl_physics                      = 2, 2, 2, 2, 2,
bldt                                = 0,0,0,0,0,
cu_physics                          = 1, 1,1,1,1,
cudt                                = 5,5,5,5,5,
isfflx                              = 1,
ifsnow                              = 1,
icloud                              = 1,
surface_input_source                = 1,
num_soil_layers                     = 4,
pxlsm_smois_init                    = 0,0,0,0,0,
mp_zero_out                         = 2,
sf_urban_physics                    = 1,
maxiens                             = 1,
maxens                              = 3,
maxens2                             = 3,
maxens3                             = 16,
ensdim                              = 144,
sst_update                          = 0,
cu_rad_feedback                     = .true.,
cugd_avedx                          = 1,
/

&fdda
obs_nudge_opt                       = 0,0,0,0,0
max_obs                             = 150000,
fdda_start                          =     0.,     0.,     0.,     0.,     0.
fdda_end                            = 99999., 99999., 99999., 99999., 99999.
obs_nudge_wind                      = 1,1,1,1,1
obs_coef_wind                       = 6.E-4,6.E-4,6.E-4,6.E-4,6.E-4
obs_nudge_temp                      = 1,1,1,1,1
obs_coef_temp                       = 6.E-4,6.E-4,6.E-4,6.E-4,6.E-4
obs_nudge_mois                      = 1,1,1,1,1
obs_coef_mois                       = 6.E-4,6.E-4,6.E-4,6.E-4,6.E-4
obs_rinxy                           = 240.,240.,180.,180,180
obs_rinsig                          = 0.1,
obs_twindo                          = 0.6666667,0.6666667,0.6666667,0.6666667,0.6666667,
obs_npfi                            = 10,
obs_ionf                            = 2, 2, 2, 2, 2,
obs_idynin                          = 0,
obs_dtramp                          = 40.,
obs_prt_freq                        = 10, 10, 10, 10, 10,
obs_prt_max                         = 10
obs_ipf_errob                       = .true.
obs_ipf_nudob                       = .true.
obs_ipf_in4dob                      = .true.
obs_ipf_init                        = .true.
/

&dynamics
rk_ord                              = 3,
w_damping                           = 0,
diff_opt                            = 1,
km_opt                              = 4,
diff_6th_opt                        = 0,0,0,0,0,
diff_6th_factor                     = 0.12,0.12,0.12,0.12,0.12,
damp_opt                            = 1,
base_temp                           = 290.,
zdamp                               = 5000.,  5000.,  5000., 5000.,5000.,
dampcoef                            = 0.01,   0.01,   0.01, 0.01, 0.01,
khdif                               = 0,      0,      0, 0,0,
kvdif                               = 0,      0,      0,0,0,
smdiv                               = 0.1,
emdiv                               = 0.01,
epssm                               = 0.1,
time_step_sound                     = 4,
h_mom_adv_order                     = 5,
v_mom_adv_order                     = 3,
h_sca_adv_order                     = 5,
v_sca_adv_order                     = 3,
non_hydrostatic                     = .true., .true., .true.,.true.,.true.,
moist_adv_opt                       = 2,      2,      2,
scalar_adv_opt                      = 2,      2,      2,
chem_adv_opt                        = 2,      2,      2,
/

&bdy_control
spec_bdy_width                      = 5,
spec_zone                           = 1,
relax_zone                          = 4,
specified                           = .true., .false.,.false.,.false.,.false.,
nested                              = .false., .true., .true.,.true.,.true.,
/

&grib2
/

&chem
kemit                               = 1,
chem_opt                            = 301, 301, 301,
bioemdt                             = 30,       30,       30,
photdt                              = 30,       30,       30,
chemdt                              = 270,270,270,
frames_per_emissfile                = 1,
io_style_emissions                  = 2,
emiss_inpt_opt                      = 1,        1,        1,
emiss_opt                           = 5,    5,    5,
chem_in_opt                         = 0,  0,  0,
phot_opt                            = 0,        0,        0,
gas_drydep_opt                      = 1,        1,        1,
bio_emiss_opt                       = 0,        0,        0,
dust_opt                            = 0,
dmsemis_opt                         = 0,
seas_opt                            = 0,
gas_bc_opt                          = 1,        1,        1,
gas_ic_opt                          = 1,        1,        1,
aer_bc_opt                          = 1,        1,        1,
aer_ic_opt                          = 1,        1,        1,
gaschem_onoff                       = 1,        1,        1,
aerchem_onoff                       = 1,        1,        1,
wetscav_onoff                       = 0,        0,        1,
cldchem_onoff                       = 0,        0,        1,
vertmix_onoff                       = 1,        1,        1,
chem_conv_tr                        = 1,        1,        1,
biomass_burn_opt                    = 0,  0,  0,
plumerisefire_frq                   = 270, 270, 270,
aer_ra_feedback                     = 0,        0,        0,
have_bcs_chem                       = .false., .false., .false.,
/

&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/



Any help would be greatly appreciated.  I am using self-made scripts for most of the running process, but it hasn't caused any errors up until this point.

Chris

--
Christopher Klich
Meteorology Graduate Student
Florida State University
(908) 208-9743
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From mmkamal at uwaterloo.ca  Mon Jun 13 20:31:38 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Mon, 13 Jun 2011 22:31:38 -0400
Subject: [Wrf-users] WPP3.2 compilation error (undefined reference..........)
Message-ID: <20110613223138.87572jx6rskohgys@www.nexusmail.uwaterloo.ca>

Hi All,


This is the first time I am trying to compile WPP3.2 but could not  
succeed. I have successfully compiled (dmpar) and tested WRFV3.2.1  
using ifort and icc compiler (11.1.072) and trying to compile WPP  
using the same compiler serially. At the end of the compilation I am  
getting the following error:

================================================================================

ifort -free -O3 -xT -fp-model precise -assume byterecl -convert  
big_endian -fpe0 -g -traceback -Wl,-noinhibit-exec  -o  
../../exec/wrfpost.exe getVariable.o getIVariable.o getVariableB.o  
getIVariableN.o getVariableRSM.o  kinds_mod.o MASKS_mod.o SOIL_mod.o  
VRBLS2D_mod.o VRBLS3D_mod.o BNDLYR.o  BOUND.o  CALCAPE.o  CALDWP.o   
CALDRG.o CALHEL.o  CALLCL.o CALMCVG.o  CALMXW.o  CALPBL.o  
CALPBLREGIME.o CALPOT.o  CALPW.o  CALRH.o  CALRCH.o CALSTRM.o CALTAU.o  
CALTHTE.o CALVIS.o CALVOR.o CALWXT.o CALWXT_RAMER.o CALWXT_BOURG.o  
CALWXT_REVISED.o CALWXT_EXPLICIT.o CALWXT_DOMINANT.o CLDRAD.o  CLMAX.o  
COLLECT.o  COLLECT_LOC.o DEWPOINT.o FDLVL.o  FIXED.o  FRZLVL.o   
FRZLVL2.o GET_BITS.o  GRIBIT.o INITPOST.o LFMFLD.o  INITPOST_BIN.o  
MISCLN.o MIXLEN.o MDL2P.o MDLFLD.o MSFPS.o MPI_FIRST.o  MPI_LAST.o  
NGMFLD.o NGMSLP.o  OTLFT.o OTLIFT.o SLP_new.o SLP_NMM.o EXCH.o  
PARA_RANGE.o  POSTDATA.o  PROCESS.o INITPOST_NMM.o EXCH2.o READCNTRL.o  
  SCLFLD.o  SERVER.o  SETUP_SERVERS.o SURFCE.o SPLINE.o  TABLE.o   
TABLEQ.o   TRANSPORTWIND.o TRPAUS.o  TTBLEX.o WETBULB.o WRFPOST.o  
INITPOST_NMM_BIN.o CALMICT.o MICROINIT.o GPVS.o MDL2SIGMA.o ETCALC.o  
CANRES.o CALGUST.o WETFRZLVL.o SNFRAC.o SNFRAC_GFS.o MDL2AGL.o  
INITPOST_RSM.o AVIATION.o  DEALLOCATE.o    
/scratch/mkamal/WRF/WPPV3/../WRFV3/frame/module_internal_header_util.o  
/scratch/mkamal/WRF/WPPV3/../WRFV3/frame/pack_utils.o  
/scratch/mkamal/WRF/WPPV3/../WRFV3/frame/wrf_debug.o  
/scratch/mkamal/WRF/WPPV3/../WRFV3/frame/module_wrf_error.o  
-L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/io_int -lwrfio_int  
/scratch/mkamal/WRF/WPPV3/../WRFV3/main/libwrflib.a  
-L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/fftpack/fftpack5  
-lfftpack -L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/io_netcdf  
-lwrfio_nf -L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/RSL_LITE  
-lrsl_lite -L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/io_grib1  
-lio_grib1 -L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/io_grib_share  
-lio_grib_share  
-L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/esmf_time_f90  
-lesmf_time -L/scratch/mkamal/WRF/WPPV3/../WRFV3/external/io_netcdf  
-lwrfio_nf   ../../lib/libw3.a ../../lib/libmpi.a  
-L/scratch/mkamal/WRF/WPPV3/netcdf_links/lib -lnetcdf
/scratch/mkamal/WRF/WPPV3/../WRFV3/main/libwrflib.a(collect_on_comm.o): In  
function `collect_on_comm_':
collect_on_comm.c:(.text+0x26): undefined reference to `MPI_Comm_f2c'
collect_on_comm.c:(.text+0x79): undefined reference to `ompi_mpi_int'
collect_on_comm.c:(.text+0x27a): undefined reference to `ompi_mpi_char'
collect_on_comm.c:(.text+0x307): undefined reference to `ompi_mpi_comm_world'
/scratch/mkamal/WRF/WPPV3/../WRFV3/main/libwrflib.a(collect_on_comm.o): In  
function `collect_on_comm0_':
collect_on_comm.c:(.text+0x344): undefined reference to `MPI_Comm_f2c'
collect_on_comm.c:(.text+0x391): undefined reference to `ompi_mpi_int'
collect_on_comm.c:(.text+0x592): undefined reference to `ompi_mpi_char'
collect_on_comm.c:(.text+0x622): undefined reference to `ompi_mpi_comm_world'
/scratch/mkamal/WRF/WPPV3/../WRFV3/main/libwrflib.a(collect_on_comm.o): In  
function `col_on_comm':
'
'
'
'
'
'
'
'
f_xpose.f:(.text+0x177d): undefined reference to `mpi_alltoallv_'
/scratch/mkamal/WRF/WPPV3/../WRFV3/external/RSL_LITE/librsl_lite.a(f_xpose.o):  
In function `trans_x2y_':
f_xpose.f:(.text+0x2be2): undefined reference to `mpi_alltoallv_'
f_xpose.f:(.text+0x30e3): undefined reference to `mpi_alltoallv_'
make[2]: Leaving directory `/scratch/mkamal/WRF/WPPV3/sorc/wrfpost'
make[1]: Leaving directory `/scratch/mkamal/WRF/WPPV3/sorc'

===============================================================
configure.wpp
===============================================================
SHELL           	=       /bin/sh

# Listing of options that are usually independent of machine type.
# When necessary, these are over-ridden by each architecture.

ARFLAGS			=

#### Architecture specific settings ####

# Settings for Linux x86_64, Intel compiler	 (serial)#
LDFLAGS         =     -Wl,-noinhibit-exec

SFC=ifort
SF90=ifort -free
SCC=icc
FFLAGS=-O3 -xT -fp-model precise -assume byterecl -convert big_endian  
-fpe0 -g -traceback $(LDFLAGS)

DM_FC=ifort
DM_F90=ifort -free
DM_CC=icc

FC              =       $(SFC)
F90             =       $(SF90)
CC              =       $(SCC)

CFLAGS=-O0 -DLINUX

###########################################################
#
#	Macros, these should be generic for all machines

LN		=	ln -sf
MAKE		=	make -i -r
RM		= 	/bin/rm -f
CP		= 	/bin/cp
AR		=	ar ru

WRF_INCLUDE  = -I$(WRF_DIR)/frame

WRF_LIB         =	$(WRF_DIR)/frame/module_internal_header_util.o \
			$(WRF_DIR)/frame/pack_utils.o \
			$(WRF_DIR)/frame/wrf_debug.o \
			$(WRF_DIR)/frame/module_wrf_error.o \
			-L$(WRF_DIR)/external/io_int -lwrfio_int \
			$(WRF_DIR)/main/libwrflib.a \
			-L$(WRF_DIR)/external/fftpack/fftpack5 -lfftpack \
			-L$(WRF_DIR)/external/io_netcdf -lwrfio_nf \
			-L$(WRF_DIR)/external/RSL_LITE -lrsl_lite \
			-L$(WRF_DIR)/external/io_grib1 -lio_grib1 \
			-L$(WRF_DIR)/external/io_grib_share -lio_grib_share \
			-L$(WRF_DIR)/external/esmf_time_f90 -lesmf_time \
			-L$(WRF_DIR)/external/io_netcdf -lwrfio_nf
WRF_LIB2        =
NETCDFPATH      =    /scratch/mkamal/WRF/WPPV3/netcdf_links
NETCDFLIBS      =     -lnetcdf
WRF_DIR         =    /scratch/mkamal/WRF/WPPV3/../WRFV3
COMMS_ADD_OBJ   =
COMMS_ADD_OBJST =
COMMS_LIB       =    libmpi.a
MAIN_OBJ        =    WRFPOST.o



.IGNORE:
.SUFFIXES: .c .f .F .o

#	There is probably no reason to modify these rules

.c.o:
	$(RM) $@
	$(CC) $(CPPFLAGS) $(CFLAGS) -c $<

.f.o:
	$(RM) $@ $*.mod
	$(FC) $(F77FLAGS) -c $< $(WRF_INCLUDE)

.F.o:
	$(RM) $@ $*.mod
	$(CPP) $(CPPFLAGS) $(FDEFS) $(WRF_INCLUDE) $< > $*.f90
	$(FC) $(FFLAGS) -c $*.f90 $(WRF_INCLUDE)
#	$(RM) $*.f90

======================================================================
confuguration.wrf
======================================================================

#### Architecture specific settings ####

# Settings for Linux x86_64 i486 i586 i686, ifort compiler with icc  (dmpar)

DMPARALLEL      =        1
OMPCPP          =       # -D_OPENMP
OMP             =       # -openmp -fpp -auto
OMPCC           =       # -openmp -fpp -auto
SFC             =       ifort
SCC             =       icc
CCOMP           =       icc
DM_FC           =       mpif90 #  -f90=$(SFC)
DM_CC           =       mpicc -DMPI2_SUPPORT # -cc=$(SCC)
FC              =        $(DM_FC)
CC              =       $(DM_CC) -DFSEEKO64_OK
LD              =       $(FC)
RWORDSIZE       =       $(NATIVE_RWORDSIZE)
PROMOTION       =       -i4
ARCH_LOCAL      =       -DNONSTANDARD_SYSTEM_FUNC
CFLAGS_LOCAL    =       -w -O3 -ip
LDFLAGS_LOCAL   =       -ip
CPLUSPLUSLIB    =
ESMF_LDFLAG     =       $(CPLUSPLUSLIB)
FCOPTIM         =       -O3
FCREDUCEDOPT	=       $(FCOPTIM)
FCNOOPT		=       -O0 -fno-inline -fno-ip
FCDEBUG         =       # -g $(FCNOOPT) -traceback
FORMAT_FIXED    =       -FI
FORMAT_FREE     =       -FR
FCSUFFIX        =
BYTESWAPIO      =       -convert big_endian
FCBASEOPTS_NO_G =       -w -ftz -align all -fno-alias -fp-model  
precise $(FORMAT_FREE) $(BYTESWAPIO)
FCBASEOPTS      =       $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =
TRADFLAG        =      -traditional
CPP             =      /lib/cpp -C -P
AR              =      ar
ARFLAGS         =      ru
M4              =      m4
RANLIB          =      ranlib
CC_TOOLS        =      $(SCC)

###########################################################
######################
# POSTAMBLE

FGREP = fgrep -iq

ARCHFLAGS       =    $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE)  
-DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE)  
-DLWORDSIZE=$(LWORDSIZE) \
                      $(ARCH_LOCAL) \
                      $(DA_ARCHFLAGS) \
                       -DDM_PARALLEL \
                        \
                       -DNETCDF \
                        \
                        \
                        \
                        \
                        \
                        \
                       -DUSE_ALLOCATABLES \
                       -DGRIB1 \
                       -DINTIO \
                       -DLIMIT_ARGS \
                       -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
                       -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
                       -DMAX_HISTORY=$(MAX_HISTORY) \
		      -DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS          =    $(CFLAGS_LOCAL) -DDM_PARALLEL  \
                       -DMAX_HISTORY=$(MAX_HISTORY)
FCFLAGS         =    $(FCOPTIM) $(FCBASEOPTS)
ESMF_LIB_FLAGS  =
  ESMF_IO_LIB     =     
$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
ESMF_IO_LIB_EXT =     
-L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
INCLUDE_MODULES =    $(MODULE_SRCH_FLAG) \
                      $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
                       -I$(WRF_SRC_ROOT_DIR)/main \
                       -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
                       -I$(WRF_SRC_ROOT_DIR)/external/io_int \
                       -I$(WRF_SRC_ROOT_DIR)/frame \
                       -I$(WRF_SRC_ROOT_DIR)/share \
                       -I$(WRF_SRC_ROOT_DIR)/phys \
                       -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
                       -I$(NETCDFPATH)/include \
                        \

REGISTRY        =    Registry

  LIB_BUNDLED     = \
                        
$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
                       $(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
                        
$(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
                       $(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
                       $(ESMF_IO_LIB) \
                       $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
                        
$(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
                       $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o

  LIB_EXTERNAL    = \
                        
$(WRF_SRC_ROOT_DIR)/external/io_netcdf/libwrfio_nf.a  
-L/scinet/gpc/Libraries/netcdf-4.0.1_nc3_intel/lib  -lnetcdf

LIB             =    $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
LDFLAGS         =    $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
ENVCOMPDEFS     =
WRF_CHEM	=	0
CPPFLAGS        =    $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
NETCDFPATH      =    /scinet/gpc/Libraries/netcdf-4.0.1_nc3_intel
PNETCDFPATH     =

bundled:  wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int  
esmf_time fftpack
external:  wrfio_nf    
$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite  
module_dm_rsllite $(ESMF_TARGET)

=========================================================================


Has anyone any idea on how to solve this.


Thanks in advance
Kamal










From ekimalab at gmail.com  Thu Jun 16 02:37:14 2011
From: ekimalab at gmail.com (Michael Bala)
Date: Thu, 16 Jun 2011 16:37:14 +0800
Subject: [Wrf-users] Specifying lat/lon on idealized Sea Breeze
Message-ID: <BANLkTimuvZKhEaiOLd8ad=dxd_1A5dDt9Q@mail.gmail.com>

Hi!

I'm trying to run an idealized case in WRF where I can input different
winds, temperature and moisture values over a specific location in the
Philippines.

I'm fairly new with WRF and can't seem to work my way around this. The
em_seabreeze2d_x idealized case doen't have terrain/topography input and I'm
not sure if the real cases allow false sounding input.

Hope you can help me. Thank you so much!

Mike
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From yh29 at mail.gatech.edu  Tue Jun 14 11:19:37 2011
From: yh29 at mail.gatech.edu (Hu, Yongtao)
Date: Tue, 14 Jun 2011 13:19:37 -0400 (EDT)
Subject: [Wrf-users] Postdoctoral Research opportunities at Georgia
 Institute of Technology
In-Reply-To: <555957506.163335.1308071721999.JavaMail.root@mail5.gatech.edu>
Message-ID: <1988987240.163550.1308071977659.JavaMail.root@mail5.gatech.edu>

School of Civil and Environmental Engineering at Georgia Institute of Technology invites applications for Postdoctoral Research opportunities

Two opportunities for Postdoctoral Research Fellow positions are open in the School of Civil and Environmental Engineering at the Georgia Institute of Technology, starting immediately. The successful candidates will have opportunity to work on challenging projects with funding from EPA, NASA, DoD and other resources. The projects include developing data assimilation techniques for air quality forecasting, integrated source apportionment using chemistry/transport models, and adaptive grid modeling of air quality impacts from various emission sources. The projects will involve working on model development, performance evaluation, emission strength analysis, and application of regional air quality models. Information on projects and the research team can be found at http://lamda.ce.gatech.edu/.

The initial appointment is for one year with the possibility of renewal for additional years based on performance and continuation of funding. Salary is contingent on qualifications with full benefits. The applicant must have a Ph.D. in atmospheric sciences, environmental engineering or a related field, with experience in regional air quality modeling. Advanced scientific programming skills are essential and previous experience with models like CMAQ, CAMx, MM5, and WRF is highly desirable. To apply for these opportunities, please email a cover letter (Subject: Postdoc Application), brief statement of research interests, CV including publications list, and contact information for three persons willing to serve as references, to Dr. M. T. Odman at odman at gatech.edu. Screening of applications will begin at receipt of any full application and will continue until positions are filled.

The Georgia Institute of Technology is an Equal Opportunity/Affirmative Action employer, and applications from women and under-represented minorities are encouraged.


-- 
Yongtao Hu, Ph.D., Research Scientist II
School of Civil and Environmental Engineering
Georgia Institute of Technology
311 Ferst Drive, ES&T building
Atlanta, GA 30332-0340
tel: 404-385-4558
fax: 404-894-8266
e-mail:yh29 at mail.gatech.edu

From hamed319 at yahoo.com  Sat Jun 18 01:34:29 2011
From: hamed319 at yahoo.com (Hamed Sharifi)
Date: Sat, 18 Jun 2011 00:34:29 -0700 (PDT)
Subject: [Wrf-users] Mexico City namelist.input require
Message-ID: <149711.71048.qm@web161207.mail.bf1.yahoo.com>

Hi All,
Is there anyone here who use WRF for simulating Mexico City?
I need some help about WRF-namelis.input physics.
Thanks in advance,

?
Hamed Sharifi,
M.Sc Student, AUT Tehran/Iran ? ?? |hamed319 at yahoo.com?    | 
+98-9364024805 ? ? ? ? ? ? ? ? ? ? ? ?? ? |  hamed_sharifi at aut.ac.ir  |
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From sstolaki at geo.auth.gr  Mon Jun 20 04:08:37 2011
From: sstolaki at geo.auth.gr (Stavroula Stolaki)
Date: Mon, 20 Jun 2011 13:08:37 +0300
Subject: [Wrf-users] SST data for WRF
Message-ID: <20110620130836.12406h9yedxkxtlw@webmail.auth.gr>

Hi to everyone!

I am quite a beginner in using WRF and I would like to ask you one  
thing about SST data. I am confused about which SST type of data to use.

On the NCEP Real-Time SST archives  
(http://polar.ncep.noaa.gov/sst/oper/Welcome.html) webpage (as  
proposed in the WRF-ARW online tutorial) there are data that reside in  
the ftp://polar.ncep.noaa.gov/pub/history/sst/ophi directory.

On the other hand there are also data in
ftp://ftp.ncep.noaa.gov/pub/data/nccf/com/gfs/prod/gfs.YYYYMMDDHH  
which are of the type:

sst2dvar_grb_0.5.grib2
sst2dvar.t12z.nam_grid
sst.t12z.nam_grid
rtgssthr_grb_0.5.grib2  and
rtgssthr_grb_0.083.grib2 (for the 1/12 degrees dataset)

I am not sure which data I should use for my WRF runs (independent of  
the resolution of them). What about the sst.t12z.nam_grid data?Are  
they for the 1200UTC time?In which format are they?

Moreover,in the case I would like to start my runs at 1200UTC of a  
day, how could I use the 0000 UTC SST data,since as far as I know,the  
SST data available concern the 0000 UTC time only.

Any help would be appreciated.

Thank you for your time!

Stavroula Stolaki



From drostkier at yahoo.com  Fri Jun 24 06:55:48 2011
From: drostkier at yahoo.com (Dorita Rostkier-Edelstein)
Date: Fri, 24 Jun 2011 05:55:48 -0700 (PDT)
Subject: [Wrf-users] =?utf-8?q?=E2=80=8F=E2=80=8FUpdate-48th_Oholo_Confere?=
 =?utf-8?q?nce_-_Eilat=2C_Israel_-_November_6-10=2C_2011?=
Message-ID: <1308920148.11817.YahooMailRC@web113103.mail.gq1.yahoo.com>

Dear colleague,
?
We kindly invite you to visit the 48th Oholo Conference website which is now 
on-line www.oholoconference.com
?
We look forward to having you amongst the participants of the 48th Oholo 
Conference.
?
Please do not hesitate to contact us for any further information or assistance 
you may need.
?
Best wishes,
Ariella
?Ariella Raz
Secretary,
48th Oholo Conference
?
Tel: 972-8-9381656
Fax: 972-8-9401404
Email: oholo at iibr.gov.il
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From drostkier at yahoo.com  Fri Jun 24 07:05:13 2011
From: drostkier at yahoo.com (Dorita Rostkier-Edelstein)
Date: Fri, 24 Jun 2011 06:05:13 -0700 (PDT)
Subject: [Wrf-users] =?utf-8?q?=E2=80=8F=E2=80=8FUpdate-Emerging_remote_se?=
 =?utf-8?q?nsing_techniques_and_associated_modeling_for_air_polurion_appli?=
 =?utf-8?q?cations-_48th_Oholo_Conference_-_Eilat=2C_Israel_-_November_6-1?=
 =?utf-8?q?0=2C_2011?=
Message-ID: <1308920713.57983.YahooMailRC@web113107.mail.gq1.yahoo.com>

Dear colleague,
?
We kindly invite you to visit the 48th Oholo Conference website which is now 
on-line www.oholoconference.com
?
We look forward to having you amongst the participants of the 48th Oholo 
Conference.
?
Please do not hesitate to contact us for any further information or assistance 
you may need.
?
Best wishes,
Ariella
?Ariella Raz
Secretary,
48th Oholo Conference
?
Tel: 972-8-9381656
Fax: 972-8-9401404
Email: oholo at iibr.gov.il
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_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu
http://mailman.ucar.edu/mailman/listinfo/wrf-users

From jinxiu58 at gmail.com  Mon Jun 20 20:57:27 2011
From: jinxiu58 at gmail.com (qiancheng jinxiu)
Date: Tue, 21 Jun 2011 10:57:27 +0800
Subject: [Wrf-users] how to run the sensitive test about heat and moist flux?
Message-ID: <BANLkTimpiecJiX26z57vq4oaZ8Tpreh_9Q@mail.gmail.com>

Hi ,WRF group:
  Just now I want to run a series numerical tests via WRFv3.2. Some of them
are related with
 boundary layer flux ( QFX and HFX) . How can I modify them (QFX and HFX)
 and run the WRF test?
 It seems I can modify the module_sf_ruclsm.F,and set the value of QFX and
HFX.

 Am I right ? Or just modify the variables including isfflx in
namelist.input ?
in the WRF help document,when isfflx=0  means * no flux *from the surface
(not for
sf_surface_sfclay = 2).but this file also says 0 = *constant fluxes* defined
by
tke_drag_coefficient,tke_heat_flux;
1 = use model computed u*, and heat and
moisture fluxes;
2 = use model computed u*, and specified
heat flux by tke_heat_flux
ifsnow 0 snow-cover effects

Can anyone tell me when isfflx is 0 ,when the flux is zero or constant ?

thank you .:)
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From kganbour at yahoo.com  Thu Jun 23 05:03:37 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Thu, 23 Jun 2011 04:03:37 -0700 (PDT)
Subject: [Wrf-users] [wrf-users] Error when I run real.exe
Message-ID: <1308827017.76739.YahooMailClassic@web46308.mail.sp1.yahoo.com>



		
Dear all:
I would like to help me.
I will try to post all my steps.
I have run WRF for ARW&NMM by test data.
But
 when I changed it to run in NMM state on my domain and by another data 
,I run all geogrid.exe,ungrib.exe,and metgrid.exe and no error.
But when I run real.exe ,I have this error :
---------------------------------------------------------------------------------------------
Namelist dfi_control not found in namelist.input. Using registry defaults for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for variables 
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1, setting
  sgfdda interval and ending time to 0 for that domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 REAL_EM V3.2.1 PREPROCESSOR
  *************************************
  Parent domain
  ids,ide,jds,jde            1          33           1          20
  ims,ime,jms,jme           -4          38          -4          25
  ips,ipe,jps,jpe            1          33           1          20
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     22248296 bytes allocated
Time period #   1 to process = 2010-12-14_00:00:00.
Time period #   2 to process = 2010-12-14_03:00:00.
Time period #   3 to process = 2010-12-14_06:00:00.
Time period #   4 to process = 2010-12-14_09:00:00.
Time period #   5 to process = 2010-12-14_12:00:00.
Time period #   6 to process = 2010-12-14_15:00:00.
Time period #   7 to process = 2010-12-14_18:00:00.
Time period #   8 to process = 2010-12-14_21:00:00.
Time period #   9 to process = 2010-12-15_00:00:00.
Time period #  10 to process = 2010-12-15_03:00:00.
Total analysis times to input =   10.
  
 -----------------------------------------------------------------------------
  
 Domain  1: Current date being processed: 2010-12-14_00:00:00.0000, which is loop #   1 out of   10
 configflags%julyr, %julday, %gmt:        2010         348  0.0000000E+00
 metgrid input_wrf.F first_date_input = 2010-12-14_00:00:00
  metgrid input_wrf.F first_date_nml = 2010-12-14_00:00:00
 d01 2010-12-14_00:00:00 Timing for input          0 s.
 Max map factor in domain 1 =  1.08. Scale the dt in the model accordingly.
forrtl: severe (66): output statement overflows record, unit -5, file Internal Formatted Write
Image              PC                Routine            Line        Source             
real.exe           00000000012A7CBD  Unknown               Unknown  Unknown
real.exe           00000000012A67C5  Unknown               Unknown  Unknown
real.exe           00000000012485D9  Unknown               Unknown  Unknown
real.exe           00000000011E779D  Unknown               Unknown  Unknown
real.exe           00000000011E6FEA  Unknown               Unknown  Unknown
real.exe           0000000001226880  Unknown               Unknown  Unknown
real.exe           0000000000445A92  Unknown               Unknown  Unknown
real.exe           000000000045055D  Unknown               Unknown  Unknown
real.exe           0000000000405966  Unknown               Unknown  Unknown
real.exe           00000000004041CC  Unknown               Unknown  Unknown
libc.so.6          00000032BDB1C3FB  Unknown               Unknown  Unknown
real.exe           00000000004040FA  Unknown               Unknown  Unknown
--------------------------------------------------------------------------------------------------

I use Input data:
GRIBFILE.AAA -> ../DATA/fh.000_tl.press_ar.octanti
GRIBFILE.AAB -> ../DATA/fh.003_tl.press_ar.octanti
GRIBFILE.AAC -> ../DATA/fh.006_tl.press_ar.octanti
GRIBFILE.AAD -> ../DATA/fh.009_tl.press_ar.octanti
GRIBFILE.AAE -> ../DATA/fh.012_tl.press_ar.octanti
GRIBFILE.AAF -> ../DATA/fh.015_tl.press_ar.octanti
GRIBFILE.AAG -> ../DATA/fh.018_tl.press_ar.octanti
GRIBFILE.AAH -> ../DATA/fh.021_tl.press_ar.octanti
GRIBFILE.AAI -> ../DATA/fh.024_tl.press_ar.octanti
GRIBFILE.AAJ -> ../DATA/fh.027_tl.press_ar.octanti
GRIBFILE.AAK -> ../DATA/fh.030_tl.press_ar.octanti
-------------------------------------------------------------
and the namelist of WPS:
&share
 wrf_core = 'ARW',
 max_dom = 1,
 start_date = '2010-12-14_00:00:00',
 end_date   = '2010-12-15_03:00:00',
 interval_seconds = 10800
 io_form_geogrid = 2,
/

&geogrid
 parent_id         =   1,   
 parent_grid_ratio =   1,   
 i_parent_start    =   1,  
 j_parent_start    =   1,  
 e_we              =  33, 
 e_sn              =  20, 
 geog_data_res     = '10m',
 dx = 30000,
 dy = 30000,
 map_proj = 'lambert',
 ref_lat   =  20,
 ref_lon   =  20,
 truelat1  =  30.0,
 truelat2  =  60.0,
 stand_lon = 2.0,
 geog_data_path = '/home/khaled/WRFI/WPS/geog'

&ungrib
 out_format = 'WPS',
 prefix = 'FILE',
/

&metgrid
 fg_name = 'FILE'
 io_form_metgrid = 2, 
/
---------------------------------------------
and the namelist.input is:
 &time_control
 run_days                            = 0,
 run_hours                           = 27,
 run_minutes                         = 0,
 run_seconds                         = 0,
 start_year                          = 2010, 2000, 2000,
 start_month                         = 12,   01,   01,
 start_day                           = 14,   24,   24,
 start_hour                          = 00,   12,   12,
 start_minute                        = 00,   00,   00,
 start_second                        = 00,   00,   00,
 end_year                            = 2010, 2000, 2000,
 end_month                           = 12,   01,   01,
 end_day                             = 15,   25,   25,
 end_hour                            = 03,   12,   12,
 end_minute                          = 00,   00,   00,
 end_second                          = 00,   00,   00,
 interval_seconds                    = 10800
 input_from_file                     = .true.,.true.,.true.,
 history_interval                    = 180,  60,   60,
 frames_per_outfile                  = 1000, 1000, 1000,
 restart                             = .false.,
 restart_interval                    = 5000,
 io_form_history                     = 2
 io_form_restart                     = 2
 io_form_input                       = 2
 io_form_boundary                    = 2
 debug_level                         = 0
 /

 &domains
 time_step                           = 180,
 time_step_fract_num                 = 0,
 time_step_fract_den                 = 1,
 max_dom                             = 1,
 e_we                                = 33,    112,   94,
 e_sn                                = 20,    97,    91,
 e_vert                              = 27,    28,    28,
 p_top_requested                     = 7000,
 num_metgrid_levels                  = 13,
 num_metgrid_soil_levels             = 0 , 
 dx                                  = 30000, 10000,  3333.33,
 dy                                  = 30000, 10000,  3333.33,
 grid_id                             = 1,     2,     3,
 parent_id                           = 0,     1,     2,
 i_parent_start                      = 1,     31,    30,
 j_parent_start                      = 1,     17,    30,
 parent_grid_ratio                   = 1,     3,     3,
 parent_time_step_ratio              = 1,     3,     3,
 feedback                            = 1,
 smooth_option                       = 0
 /

 &physics
 mp_physics                          = 3,     3,     3,
 ra_lw_physics                       = 1,     1,     1,
 ra_sw_physics                       = 1,     1,     1,
 radt                                = 30,    30,    30,
 sf_sfclay_physics                   = 1,     1,     1,
 sf_surface_physics                  = 2,     2,     2,
 bl_pbl_physics                      = 1,     1,     1,
 bldt                                = 0,     0,     0,
 cu_physics                          = 1,     1,     0,
 cudt                                = 5,     5,     5,
 isfflx                              = 1,
 ifsnow                              = 0,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 4,
 sf_urban_physics                    = 0,     0,     0,
 maxiens                             = 1,
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,
 /

 &fdda
 /

 &dynamics
 w_damping                           = 0,
 diff_opt                            = 1,
 km_opt                              = 4,
 diff_6th_opt                        = 0,      0,      0,
 diff_6th_factor                     = 0.12,   0.12,   0.12,
 base_temp                           = 290.
 damp_opt                            = 0,
 zdamp                               = 5000.,  5000.,  5000.,
 dampcoef                            = 0.2,    0.2,    0.2
 khdif                               = 0,      0,      0,
 kvdif                               = 0,      0,      0,
 non_hydrostatic                     = .true., .true., .true.,
 moist_adv_opt                       = 1,      1,      1,     
 scalar_adv_opt                      = 1,      1,      1,     
 /

 &bdy_control
 spec_bdy_width                      = 5,
 spec_zone                           = 1,
 relax_zone                          = 4,
 specified                           = .true., .false.,.false.,
 nested                              = .false., .true., .true.,
 /

 &grib2
 /

 &namelist_quilt
 nio_tasks_per_group = 0,
 nio_groups = 1,
 /
--------------------------------------------------

I am looking forward for your replay

with best regards

Khaled

			
		
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From yagnesh at lowtem.hokudai.ac.jp  Mon Jun 20 16:15:08 2011
From: yagnesh at lowtem.hokudai.ac.jp (yagnesh)
Date: Tue, 21 Jun 2011 07:15:08 +0900
Subject: [Wrf-users] changing land points to sea.?
Message-ID: <4DFFC66C.5050600@lowtem.hokudai.ac.jp>

Hello wrf-users,

I am trying to change land point to sea points. if I modify LANDMASK, it 
seems model is resetting back in the real.exe. could some one let me 
know what are the other variables i should look for?


Thanks&Regards.,
yyr

From annawaxegard at hotmail.com  Mon Jun 27 01:08:41 2011
From: annawaxegard at hotmail.com (anna waxegard)
Date: Mon, 27 Jun 2011 07:08:41 +0000
Subject: [Wrf-users] WRF SST
Message-ID: <SNT134-w13F393AAF2229D9AB09029D4570@phx.gbl>


Hello, I?m working with a 3 nested domain with the polar WRF 3.2. When I put STT_update=1 I get segmentationerror after 30 minutes when running wrf.exe. I run the model with the timestep 120 sec. I tried to run the model with only one domain but that doesn't seem to do the trick either.. Real. exe succefully create the wrflowinp_d01. I configured the modell with intel and dmpar. Any suggestions? This is my namelist:&time_controlrun_days = 1,run_hours = 0,run_minutes = 0,run_seconds = 0,start_year = 2007, 2007, 2007,start_month = 01, 01, 01,start_day = 01, 01, 01,start_hour = 00, 00, 00,start_minute = 00, 00, 00,start_second = 00, 00, 00,end_year = 2007, 2007, 2007,end_month = 01, 01, 01,end_day = 03, 02, 02,end_hour = 00, 00, 00,end_minute = 00, 00, 00,end_second = 00, 00, 00,interval_seconds = 21600input_from_file = .true.,.true.,.true.,history_interval = 180, 180, 180,frames_per_outfile = 240, 240, 240,restart = .false.,restart_interval = 43200,io_form_history = 2io_form_restart = 2io_form_input = 2io_form_boundary = 2debug_level = 0io_form_auxinput4 = 2auxinput4_inname = "wrflowinp_d<domain>"auxinput4_interval = 360, 360, 360,/&domainstime_step = 120,time_step_fract_num = 0,time_step_fract_den = 1,max_dom = 1,e_we = 39, 64, 115,e_sn = 44, 76, 106,e_vert = 28, 28, 28,p_top_requested = 5000,num_metgrid_levels = 15,num_metgrid_soil_levels = 4,dx = 24000, 8000, 2666.67,dy = 24000, 8000, 2666.67,grid_id = 1, 2, 3,parent_id = 1, 1, 2,i_parent_start = 1, 10, 10,j_parent_start = 1, 11, 30,parent_grid_ratio = 1, 3, 3,parent_time_step_ratio = 1, 3, 3,feedback = 0,smooth_option = 0,/&physicsmp_physics = 10, 10, 10,ra_lw_physics = 1, 1, 1,ra_sw_physics = 2, 2, 2,radt = 30, 30, 30,sf_sfclay_physics = 2, 2, 2,sf_surface_physics = 2, 2, 2,bl_pbl_physics = 2, 2, 2,bldt = 0, 0, 0,cu_physics = 3, 3, 3,cudt = 5, 5, 5,isfflx = 1,ifsnow = 0,icloud = 1,surface_input_source = 1,num_soil_layers = 4,sf_urban_physics = 0, 0, 0,maxiens = 1,maxens = 3,maxens2 = 3,maxens3 = 16,ensdim = 144,sst_update = 1,fractional_seaice = 0,Grateful for answer!Please tell me if there is anything else I can submit to ease?/Anna 		 	   		  
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From kganbour at yahoo.com  Sun Jun 26 01:48:08 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Sun, 26 Jun 2011 00:48:08 -0700 (PDT)
Subject: [Wrf-users] [wrf-users]Error when I run real.exe for ARW case
Message-ID: <1309074488.35628.YahooMailClassic@web46311.mail.sp1.yahoo.com>




Dear all:
Sorry in this case I compilated WRF with ARW,I confused becuase also I have some wrong with NMM case in another linux user 
I will try to post all my steps.
I have run WRF for ARW&NMM by test data.
But
 when I changed it to run in ARW state on my domain and by another data 
,I run all geogrid.exe,ungrib.exe,and metgrid.exe and no error.
But when I run real.exe ,I have this error :
---------------------------------------------------------------------------------------------
Namelist dfi_control not found in namelist.input. Using registry defaults for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for variables 
 in tc
 Namelist scm not found in namelist.input. Using registry defaults for variables
  in scm
 Namelist fire not found in namelist.input. Using registry defaults for variable
 s in fire
 --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval
  = 0 for all domains
 --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and ending t
 ime to 0 for that domain.
 --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1, setting
  sgfdda interval and ending time to 0 for that
 domain.
 --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging interval an
 d ending time to 0 for that domain.
 --- NOTE: num_soil_layers has been set to      4
 REAL_EM V3.2.1 PREPROCESSOR
  *************************************
  Parent domain
  ids,ide,jds,jde            1          33           1          20
  ims,ime,jms,jme           -4          38          -4          25
  ips,ipe,jps,jpe            1          33           1          20
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,     22248296 bytes allocated
Time period #   1 to process = 2010-12-14_00:00:00.
Time period #   2 to process = 2010-12-14_03:00:00.
Time period #   3 to process = 2010-12-14_06:00:00.
Time period #   4 to process = 2010-12-14_09:00:00.
Time period #   5 to process = 2010-12-14_12:00:00.
Time period #   6 to process =
 2010-12-14_15:00:00.
Time period #   7 to process = 2010-12-14_18:00:00.
Time period #   8 to process = 2010-12-14_21:00:00.
Time period #   9 to process = 2010-12-15_00:00:00.
Time period #  10 to process = 2010-12-15_03:00:00.
Total analysis times to input =   10.
  
 -----------------------------------------------------------------------------
  
 Domain  1: Current date being processed: 2010-12-14_00:00:00.0000, which is loop #   1 out of   10
 configflags%julyr, %julday, %gmt:        2010         348  0.0000000E+00
 metgrid input_wrf.F first_date_input = 2010-12-14_00:00:00
  metgrid input_wrf.F first_date_nml = 2010-12-14_00:00:00
 d01 2010-12-14_00:00:00 Timing for input          0 s.
 Max map factor in domain 1 =  1.08. Scale the dt in the model accordingly.
forrtl: severe (66): output statement overflows record, unit -5, file Internal Formatted Write
Image              PC                Routine   
         Line        Source             
real.exe           00000000012A7CBD  Unknown               Unknown  Unknown
real.exe           00000000012A67C5  Unknown               Unknown  Unknown
real.exe           00000000012485D9  Unknown               Unknown  Unknown
real.exe           00000000011E779D  Unknown               Unknown  Unknown
real.exe           00000000011E6FEA  Unknown               Unknown  Unknown
real.exe           0000000001226880  Unknown               Unknown  Unknown
real.exe           0000000000445A92  Unknown               Unknown  Unknown
real.exe           000000000045055D  Unknown               Unknown  Unknown
real.exe           0000000000405966  Unknown               Unknown  Unknown
real.exe           00000000004041CC  Unknown               Unknown  Unknown
libc.so.6          00000032BDB1C3FB  Unknown               Unknown  Unknown
real.exe           00000000004040FA  Unknown           
    Unknown  Unknown
--------------------------------------------------------------------------------------------------

I use Input data:
GRIBFILE.AAA -> ../DATA/fh.000_tl.press_ar.octanti
GRIBFILE.AAB -> ../DATA/fh.003_tl.press_ar.octanti
GRIBFILE.AAC -> ../DATA/fh.006_tl.press_ar.octanti
GRIBFILE.AAD -> ../DATA/fh.009_tl.press_ar.octanti
GRIBFILE.AAE -> ../DATA/fh.012_tl.press_ar.octanti
GRIBFILE.AAF -> ../DATA/fh.015_tl.press_ar.octanti
GRIBFILE.AAG -> ../DATA/fh.018_tl.press_ar.octanti
GRIBFILE.AAH -> ../DATA/fh.021_tl.press_ar.octanti
GRIBFILE.AAI -> ../DATA/fh.024_tl.press_ar.octanti
GRIBFILE.AAJ -> ../DATA/fh.027_tl.press_ar.octanti
GRIBFILE.AAK -> ../DATA/fh.030_tl.press_ar.octanti
-------------------------------------------------------------
and the namelist of WPS:
&share
 wrf_core = 'ARW',
 max_dom = 1,
 start_date = '2010-12-14_00:00:00',

 end_date   = '2010-12-15_03:00:00',
 interval_seconds = 10800
 io_form_geogrid = 2,
/

&geogrid
 parent_id         =   1,   
 parent_grid_ratio =   1,   
 i_parent_start    =   1,  
 j_parent_start    =   1,  
 e_we              =  33, 
 e_sn              =  20, 
 geog_data_res     = '10m',
 dx = 30000,
 dy = 30000,
 map_proj = 'lambert',
 ref_lat   =  20,
 ref_lon   =  20,
 truelat1  =  30.0,
 truelat2  =  60.0,
 stand_lon = 2.0,
 geog_data_path = '/home/khaled/WRFI/WPS/geog'

&ungrib
 out_format = 'WPS',
 prefix = 'FILE',
/

&metgrid
 fg_name = 'FILE'
 io_form_metgrid = 2, 
/
---------------------------------------------
and the namelist.input is:
 &time_control
 run_days                            = 0,
 run_hours                           = 27,
 run_minutes                         = 0,
 run_seconds                        
 = 0,
 start_year                          = 2010, 2000, 2000,
 start_month                         = 12,   01,   01,
 start_day                           = 14,   24,   24,
 start_hour                          = 00,   12,   12,
 start_minute                        = 00,   00,   00,
 start_second                        = 00,   00,   00,
 end_year                            = 2010, 2000, 2000,
 end_month                           = 12,   01,   01,
 end_day                             = 15,   25,   25,
 end_hour                            = 03,   12,   12,
 end_minute                          = 00,   00,   00,
 end_second                          = 00,   00,   00,
 interval_seconds                    = 10800
 input_from_file                     = .true.,.true.,.true.,
 history_interval                    = 180,  60,   60,
 frames_per_outfile                  = 1000, 1000, 1000,
 restart                     
        = .false.,
 restart_interval                    = 5000,
 io_form_history                     = 2
 io_form_restart                     = 2
 io_form_input                       = 2
 io_form_boundary                    = 2
 debug_level                         = 0
 /

 &domains
 time_step                           = 180,
 time_step_fract_num                 = 0,
 time_step_fract_den                 = 1,
 max_dom                             = 1,
 e_we                                = 33,    112,   94,
 e_sn                                = 20,    97,    91,
 e_vert                              = 27,    28,    28,
 p_top_requested                     = 7000,
 num_metgrid_levels                  = 13,
 num_metgrid_soil_levels             = 0 , 
 dx                                  = 30000, 10000,  3333.33,
 dy                                  = 30000, 10000,  3333.33,
 grid_id        
                     = 1,     2,     3,
 parent_id                           = 0,     1,     2,
 i_parent_start                      = 1,     31,    30,
 j_parent_start                      = 1,     17,    30,
 parent_grid_ratio                   = 1,     3,     3,
 parent_time_step_ratio              = 1,     3,     3,
 feedback                            = 1,
 smooth_option                       = 0
 /

 &physics
 mp_physics                          = 3,     3,     3,
 ra_lw_physics                       = 1,     1,     1,
 ra_sw_physics                       = 1,     1,     1,
 radt                                = 30,    30,    30,
 sf_sfclay_physics                   = 1,     1,     1,
 sf_surface_physics                  = 2,     2,     2,
 bl_pbl_physics                      = 1,     1,     1,
 bldt                                = 0,     0,     0,
 cu_physics                          =
 1,     1,     0,
 cudt                                = 5,     5,     5,
 isfflx                              = 1,
 ifsnow                              = 0,
 icloud                              = 1,
 surface_input_source                = 1,
 num_soil_layers                     = 4,
 sf_urban_physics                    = 0,     0,     0,
 maxiens                             = 1,
 maxens                              = 3,
 maxens2                             = 3,
 maxens3                             = 16,
 ensdim                              = 144,
 /

 &fdda
 /

 &dynamics
 w_damping                           = 0,
 diff_opt                            = 1,
 km_opt                              = 4,
 diff_6th_opt                        = 0,      0,      0,
 diff_6th_factor                     = 0.12,   0.12,   0.12,
 base_temp                           = 290.
 damp_opt        
                    = 0,
 zdamp                               = 5000.,  5000.,  5000.,
 dampcoef                            = 0.2,    0.2,    0.2
 khdif                               = 0,      0,      0,
 kvdif                               = 0,      0,      0,
 non_hydrostatic                     = .true., .true., .true.,
 moist_adv_opt                       = 1,      1,      1,     
 scalar_adv_opt                      = 1,      1,      1,     
 /

 &bdy_control
 spec_bdy_width                      = 5,
 spec_zone                           = 1,
 relax_zone                          = 4,
 specified                           = .true., .false.,.false.,
 nested                              = .false., .true., .true.,
 /

 &grib2
 /

 &namelist_quilt
 nio_tasks_per_group = 0,
 nio_groups = 1,
 /
--------------------------------------------------

I am looking forward
 for your replay

with best regards

Khaled

			
		
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From kganbour at yahoo.com  Sun Jun 26 03:33:31 2011
From: kganbour at yahoo.com (Khaled Ganbour)
Date: Sun, 26 Jun 2011 02:33:31 -0700 (PDT)
Subject: [Wrf-users] [wrf_users]
Message-ID: <1309080811.27479.YahooMailClassic@web46309.mail.sp1.yahoo.com>

Dear all:I am sorry for many emails,but I tried a lot ?to run WRF and when I have some error I will stop.I don't know which Vtable for my data "fh.000_tl.press_ar.octanti".Today,I tried to use Vtable.ARW with ARW caseI executed geogrid.exe,ungrib.exe,and metgrid.exe without errors.But when I run real.exe,I have this error:?-------------- FATAL CALLED ---------------?FATAL CALLED FROM FILE: ?<stdin> ?LINE: ? ? 701? input_wrf.F: SIZE MISMATCH: ?namelist ide,jde,num_metgrid_levels= ? ? ? ? ?33?? ? ? ? ? 20 ? ? ? ? ?13; input data ide,jde,num_metgrid_levels= ? ? ? ? ?33 ? ?? ? ? ?20 ? ? ? ? ? 1 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ??? ? ? ? ? ? ? ? ? ???-------------------------------------------
and also I it isn't clear for me all parameters in namelists especially to determine the domain,please help me to put my domain lat&long,and all other numbers.I attached my domain image which I want,and also I attached the result or real.exe execution,and the namelist.wps&namelist.input which I used.If there is error in namelists,please correct the according my domain image.

I am looking forward for your replay
Best regards
Khaled
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From agnes.mika at bmtargoss.com  Tue Jun 28 01:38:41 2011
From: agnes.mika at bmtargoss.com (Agnes Mika)
Date: Tue, 28 Jun 2011 09:38:41 +0200
Subject: [Wrf-users] [wrf_users]
In-Reply-To: <1309080811.27479.YahooMailClassic@web46309.mail.sp1.yahoo.com>
References: <1309080811.27479.YahooMailClassic@web46309.mail.sp1.yahoo.com>
Message-ID: <20110628073841.GA2476@aggedor.argoss.nl>

Hallo Khaled,

 I suggest you read carefully the WRF users' manual, it should answer
 your questions about how to set a domain up.

 As for the problem you encounter when running real: the error message
 says that the domain parameters (number of grid points in the x, y
 and z directions) are not the same in your namelist.input file and
 your input data (the output from metgrid). It seems that in your
 metgrid data there is only one vertical level while you say in your
 namelist.input that you have 13. Check the number of vertical levels
 in your global input (NCEP?) data. If that's all right then run the
 pre-processing steps again, checking after each step if the results
 are ok.

I hope this helps.

Regards,
Agnes

Khaled Ganbour wrote:
> Dear all:I am sorry for many emails,but I tried a lot ?to run WRF and when I have some error I will stop.I don't know which Vtable for my data "fh.000_tl.press_ar.octanti".Today,I tried to use Vtable.ARW with ARW caseI executed geogrid.exe,ungrib.exe,and metgrid.exe without errors.But when I run real.exe,I have this error:?-------------- FATAL CALLED ---------------?FATAL CALLED FROM FILE: ?<stdin> ?LINE: ? ? 701? input_wrf.F: SIZE MISMATCH: ?namelist ide,jde,num_metgrid_levels= ? ? ? ? ?33?? ? ? ? ? 20 ? ? ? ? ?13; input data ide,jde,num_metgrid_levels= ? ? ? ? ?33 ? ?? ? ? ?20 ? ? ? ? ? 1 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ??? ? ? ? ? ? ? ? ? ???-------------------------------------------
> and also I it isn't clear for me all parameters in namelists especially to determine the domain,please help me to put my domain lat&long,and all other numbers.I attached my domain image which I want,and also I attached the result or real.exe execution,and the namelist.wps&namelist.input which I used.If there is error in namelists,please correct the according my domain image.
> 
> I am looking forward for your replay
> Best regards
> Khaled


>  Namelist dfi_control not found in namelist.input. Using registry defaults for v
>  ariables in dfi_control
>  Namelist tc not found in namelist.input. Using registry defaults for variables 
>  in tc
>  Namelist scm not found in namelist.input. Using registry defaults for variables
>   in scm
>  Namelist fire not found in namelist.input. Using registry defaults for variable
>  s in fire
>  --- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval
>   = 0 for all domains
>  --- NOTE: grid_fdda is 0 for domain      1, setting gfdda interval and ending t
>  ime to 0 for that domain.
>  --- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain      1, setting
>   sgfdda interval and ending time to 0 for that domain.
>  --- NOTE: obs_nudge_opt is 0 for domain      1, setting obs nudging interval an
>  d ending time to 0 for that domain.
>  --- NOTE: num_soil_layers has been set to      4
>  REAL_EM V3.2.1 PREPROCESSOR
>   *************************************
>   Parent domain
>   ids,ide,jds,jde            1          33           1          20
>   ims,ime,jms,jme           -4          38          -4          25
>   ips,ipe,jps,jpe            1          33           1          20
>   *************************************
>  DYNAMICS OPTION: Eulerian Mass Coordinate
>     alloc_space_field: domain            1,     22248296 bytes allocated
> Time period #   1 to process = 2010-12-14_00:00:00.
> Time period #   2 to process = 2010-12-14_03:00:00.
> Time period #   3 to process = 2010-12-14_06:00:00.
> Time period #   4 to process = 2010-12-14_09:00:00.
> Time period #   5 to process = 2010-12-14_12:00:00.
> Time period #   6 to process = 2010-12-14_15:00:00.
> Time period #   7 to process = 2010-12-14_18:00:00.
> Time period #   8 to process = 2010-12-14_21:00:00.
> Time period #   9 to process = 2010-12-15_00:00:00.
> Time period #  10 to process = 2010-12-15_03:00:00.
> Total analysis times to input =   10.
>   
>  -----------------------------------------------------------------------------
>   
>  Domain  1: Current date being processed: 2010-12-14_00:00:00.0000, which is loop #   1 out of   10
>  configflags%julyr, %julday, %gmt:        2010         348  0.0000000E+00
>  metgrid input_wrf.F first_date_input = 2010-12-14_00:00:00
>   metgrid input_wrf.F first_date_nml = 2010-12-14_00:00:00
>  -------------- FATAL CALLED ---------------
>  FATAL CALLED FROM FILE:  <stdin>  LINE:     701
>   input_wrf.F: SIZE MISMATCH:  namelist ide,jde,num_metgrid_levels=          33 
>           20          13; input data ide,jde,num_metgrid_levels=          33    
>        20           1                                                           
>                     
>  -------------------------------------------



> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

--
Dr. ?gnes Mika
Advisor, Meteorology and Air Quality

Tel:    +31 (0)527-242299
Fax:    +31 (0)527-242016
Web:    www.bmtargoss.com

BMT ARGOSS
P.O. Box 61, 8325 ZH Vollenhove
Voorsterweg 28, 8316 PT Marknesse
The Netherlands

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only do so if really necessary.




From aruny at iitk.ac.in  Fri Jul  1 07:55:33 2011
From: aruny at iitk.ac.in (Arun)
Date: Fri, 01 Jul 2011 19:25:33 +0530
Subject: [Wrf-users] MMILNU error on input
Message-ID: <4E0DD1D5.9070404@iitk.ac.in>

Hi,
I'm trying to do a wrf/chem simulation for Jan'11. After running 
real.exe when I try to run wrf.exe, it gives me an error "MMINLU error 
on input". I'm attaching my compiler's log file as well as the 
namelist.input file. Please tell me where am I going wrong. I have tried 
googling but no help till now.

Regards,
Arun
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From veiga.uea at gmail.com  Tue Jun 28 17:37:54 2011
From: veiga.uea at gmail.com (=?ISO-8859-1?Q?Jose_Augusto_Paix=E3o_Veiga?=)
Date: Tue, 28 Jun 2011 19:37:54 -0400
Subject: [Wrf-users] Compiling WPS (version 3.3 and 3.2)
Message-ID: <BANLkTik8D6mJQGCxkJDxZTEPcF3aCH2sLg@mail.gmail.com>

Dear all,

I am trying to compile WPS in a cluster of linux machines using  option 8
(PC Linux x86_64 (IA64 and Opteron), PGI compiler 5.2 or higher, DM
parallel, NO GRIB2) in the configuration procedure. However, after an
apparent successful compilation, just  ungrib.exe file was created in WPS
directory. My question: why the others executable files (geogrid.exe and
metgrid.exe) will not be created? What must I do in this case?

Thanks in advance,

Jos? Augusto P. Veiga,

======================================
Universidade do Estado do Amazonas
Departamento de Meteorologia
Escola Superior de Tecnologia (EST)
-----------------------------------------------------------------------------
Av. Darcy Vargas, 1200, Manaus-AM Brasil
Work phone:    (92) 3878 4333, Ramal 4333
Cell   phone :    (92) 8196 7122
Skype: veiga_j.a.p.
-----------------------------------------------------------------------------
CV: http://lattes.cnpq.br/4027612512091565
URL:http://scientificmet.wordpress.com/
-----------------------------------------------------------------------------
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From jasonpadovani at gmail.com  Wed Jul  6 17:56:36 2011
From: jasonpadovani at gmail.com (Jason Padovani Ginies)
Date: Thu, 7 Jul 2011 01:56:36 +0200
Subject: [Wrf-users] Fresh Installation + LES
Message-ID: <CAHJ3cyPhbzekM4wm-7qCJYawPvJjQjCaHS8=f2sDUxhpieo1Lg@mail.gmail.com>

Hi all,

I intend to do a fresh installation of WRF on the university Cluster. Was
wondering if you could help me out with these questions:

   - Best version to use which runs smoothest with LES and possibly CLWRF
   - Any pre-requisite software needed before installing WRF
   - whether LES capability has to be installed at compilation time?

Kind regards,

Jason Padovani Ginies
Department of Physics
University of Malta
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From camilo.hernandez at gmail.com  Wed Jul  6 23:50:20 2011
From: camilo.hernandez at gmail.com (Juan Camilo Hernandez D)
Date: Thu, 7 Jul 2011 00:50:20 -0500
Subject: [Wrf-users] MET Obs ASCII Help.
Message-ID: <CADPRXTX41A7Cae5Eas2mCfo92s6_0R46HKLb5m9=-1iFU-kocg@mail.gmail.com>

Hello everyone

I built a database with information obtained from surface weather stations
(Six months of hourly data); with the following variables, temperature (2m),
relative humidity(2m), wind speed (10m) and wind direction (10m) percent.

I want to use the MET tool to verify the results of my simulations, but do
not quite understand how to prepare ASCII files for the tool ASCII2NC. I
tried to find an example that can apply to my case but I have not been
successful (Only the example included in the source code)

Does anyone can provide me an example for my case?

Thank you very much.


--
JUAN CAMILO HERN?NDEZ D?AZ
http://www.jkoyo.net
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From ngphquyan at gmail.com  Thu Jul  7 03:13:03 2011
From: ngphquyan at gmail.com (Nguyen Phuoc Quy An)
Date: Thu, 7 Jul 2011 04:13:03 -0500
Subject: [Wrf-users] error - run MCIP with WRF
Message-ID: <CAAGiwamoUxTbrJnGvQmqSmtZm7vVBCEP=NOQCDv96ReR=VTQ2Q@mail.gmail.com>

Dear Sir,
I run MCIP with WRF and have this error. Can you explain for me this error?
Thank you very much!
 **********************************************************************
 *** SUBROUTINE: SETUP
 ***   ERROR RETRIEVING VARIABLE FROM WRF FILE
 ***   VARIABLE = DYN_OPT
 ***   RCODE = -43
 **********************************************************************
    *** ERROR ABORT in subroutine SETUP
    ABNORMAL TERMINATION IN SETUP
    Date and time  0:00:00   Aug. 1, 2007    (2007213:000000)

Anna
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From ngphquyan at gmail.com  Thu Jul  7 03:17:57 2011
From: ngphquyan at gmail.com (Nguyen Phuoc Quy An)
Date: Thu, 7 Jul 2011 04:17:57 -0500
Subject: [Wrf-users] Error - run MCIP with WRF
Message-ID: <CAAGiwamYgsgcChTshAUuqVCQLb5SuP19ad2LJ_7CXJMDby2jwg@mail.gmail.com>

Dear Sir,
I run MCIP with WRF and have this error. Can you explain for me this error?
Thank you very much!
 **********************************************************************
 *** SUBROUTINE: SETUP
 ***   ERROR RETRIEVING VARIABLE FROM WRF FILE
 ***   VARIABLE = DYN_OPT
 ***   RCODE = -43
 **********************************************************************
    *** ERROR ABORT in subroutine SETUP
    ABNORMAL TERMINATION IN SETUP
    Date and time  0:00:00   Aug. 1, 2007    (2007213:000000)

Anna
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From sp4rk136 at hotmail.com  Thu Jul  7 03:43:32 2011
From: sp4rk136 at hotmail.com (Jason Padovani Ginies)
Date: Thu, 7 Jul 2011 11:43:32 +0200
Subject: [Wrf-users] Installation/LES/CLWRF
Message-ID: <CAHJ3cyMRWKEUkiNnFHbikKNX1Htvf8-Loaai2y_nOjBa4Pv2mA@mail.gmail.com>

Hi all,

I intend to do a fresh installation of WRF on the university Cluster. Was
wondering if you could help me out with these questions:

   - Best version to use which runs smoothest with LES and possibly CLWRF
   - Any pre-requisite software needed before installing WRF

Kind regards,

Jason Padovani Ginies
Department of Physics
University of Malta
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From andrew.robbie at gmail.com  Sun Jul 10 09:02:48 2011
From: andrew.robbie at gmail.com (Andrew Robbie (GMail))
Date: Mon, 11 Jul 2011 01:02:48 +1000
Subject: [Wrf-users] Installation/LES/CLWRF
In-Reply-To: <CAHJ3cyMRWKEUkiNnFHbikKNX1Htvf8-Loaai2y_nOjBa4Pv2mA@mail.gmail.com>
References: <CAHJ3cyMRWKEUkiNnFHbikKNX1Htvf8-Loaai2y_nOjBa4Pv2mA@mail.gmail.com>
Message-ID: <CAAogcnrMxeaybxTgLMk2wz8KLyRJYdt41wnijr3RQ-YO7DLZ0g@mail.gmail.com>

Hi Jason,

The WRF UCAR website describes the prerequisites quite well, but briefly:
    - gcc and/or other compilers (e.g. Intel and PGI compilers)
    - HDF5
    - NetCDF 4
    - Jasper
    - Proj4
    - szip
    - udunits2
    - zlib

You will probably also need:
    - NCL
    - Vapor
    - ncview
    - nco

When you say "runs smoothest with LES" I presume you mean the LES code
in WRF? In which case I would say the latest version of WRF, v3.3.
Make sure to apply all the patches or you will likely experience
frustration.

Re clWRF, no experience with it, but it says it is a patch against
3.1.1 so you would have to use that version unless they have validated
their changes against a newer version.

Regards,
Andrew


On Thu, Jul 7, 2011 at 7:43 PM, Jason Padovani Ginies
<sp4rk136 at hotmail.com> wrote:
> Hi all,
>
> I intend to do a fresh installation of WRF on the university Cluster. Was
> wondering if you could help me out with these questions:
>
> Best version to use which runs smoothest with LES and possibly CLWRF
> Any pre-requisite software needed before installing WRF
>
> Kind regards,
>
> Jason Padovani Ginies
> Department of Physics
> University of Malta
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>

From ar.ragi at gmail.com  Tue Jul 12 05:01:44 2011
From: ar.ragi at gmail.com (Ragi A.R)
Date: Tue, 12 Jul 2011 16:31:44 +0530
Subject: [Wrf-users] Ideal.exe error
Message-ID: <CAMVLxRRXiaSOzaX07hy0VL8Gu_2NMr9L9aHo6z=4Y2gi95udug@mail.gmail.com>

*
Dear WRF Users,
**
I am running WRF ideal case (the given data and input sounding).

I had generated ideal.exe and run it and was successful.

While running wrf.exe i came across the following error.

Can anyone suggest how to proceed further? *



taskid: 0 hostname: ajaymeru.cas.iitd.ernet.in
 Quilting with   1 groups of   0 I/O tasks.
 Namelist fdda not found in namelist.input. Using registry defaults for
variable
 s in fdda
 Namelist dfi_control not found in namelist.input. Using registry defaults
for v
 ariables in dfi_control
 Namelist tc not found in namelist.input. Using registry defaults for
variables
 in tc
 Namelist grib2 not found in namelist.input. Using registry defaults for
variabl
 es in grib2
 Namelist fire not found in namelist.input. Using registry defaults for
variable
 s in fire
  Ntasks in X            1, ntasks in Y            1
 WRF V3.1.1 MODEL
  *************************************
  Parent domain
  ids,ide,jds,jde            1           3           1           3
  ims,ime,jms,jme           -4           8          -4           8
  ips,ipe,jps,jpe            1           3           1           3
  *************************************
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1,      6796220 bytes allocated
   med_initialdata_input: calling input_model_input
 INPUT LandUse = "USGS"
 -------------- FATAL CALLED ---------------
 FATAL CALLED FROM FILE:  <stdin>  LINE:    7409
 module_ra_rrtm: error opening RRTM_DATA on unit   10
 -------------------------------------------
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0[unset]: aborting
job:
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0

*-- *
*************************************************************************
*Regards,*
*A.R.Ragi*
*Research Scholar
*
*CAS, IIT Delhi*

*************************************************************************
*"I want to know how God created this world.
 I am not interested in this or that phenomenon.
 I want to know, his thought, the rest are details."
---Albert Einstein*

*************************************************************************
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From yingli at mail.usf.edu  Wed Jul 13 08:02:15 2011
From: yingli at mail.usf.edu (yingli zhu)
Date: Wed, 13 Jul 2011 10:02:15 -0400
Subject: [Wrf-users] wrf output varialbe OLR
Message-ID: <C0C94861-D17D-4AB0-A48F-F2F949AA4E45@mail.usf.edu>

Hi, all,
Is the variable in wrfout, TOA outgoing long wave radiation, equivalent to the satellite product (GOES-8), broadband long wave flux?
Have a good day
Yingli

From selaya062 at yahoo.com  Fri Jul 15 04:25:36 2011
From: selaya062 at yahoo.com (Arie maryadi)
Date: Fri, 15 Jul 2011 18:25:36 +0800 (SGT)
Subject: [Wrf-users] Please help
In-Reply-To: <1310725361.55706.YahooMailNeo@web78204.mail.sg1.yahoo.com>
References: <1310725361.55706.YahooMailNeo@web78204.mail.sg1.yahoo.com>
Message-ID: <1310725536.71830.YahooMailNeo@web78216.mail.sg1.yahoo.com>

Dear WRF users,


I have? problem while processing ARWpost.exe.
The error? notification is like this :

=======================================================
START PROCESSING DATA
?? Interpolating to PRESSURE levels


?Processing? time --- 2010-02-09_04:00:18
?? Found the right date - continue

?Processing? time --- 2010-02-09_04:10:18
?? Found the right date - continue
Troubles finding level? 100 above ground.
Problems first occur at (?? 1,?? 1)
Surface pressure =??? NaN hPa.
Error_in_finding_100_hPa_up


==============================================


Please help me, what to do to solve this problem.
Thank you..
?
Regards,
Ari
 Maryadi
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From selaya062 at yahoo.com  Fri Jul 15 04:27:16 2011
From: selaya062 at yahoo.com (Arie maryadi)
Date: Fri, 15 Jul 2011 18:27:16 +0800 (SGT)
Subject: [Wrf-users]   Please help
In-Reply-To: <1310725536.71830.YahooMailNeo@web78216.mail.sg1.yahoo.com>
References: <1310725361.55706.YahooMailNeo@web78204.mail.sg1.yahoo.com>
	<1310725536.71830.YahooMailNeo@web78216.mail.sg1.yahoo.com>
Message-ID: <1310725636.41488.YahooMailNeo@web78214.mail.sg1.yahoo.com>



Dear WRF users,


I have? problem while processing ARWpost.exe.
The error? notification is like this :

=======================================================
START PROCESSING DATA
?? Interpolating to PRESSURE levels


?Processing? time --- 2010-02-09_04:00:18
?? Found the right date - continue

?Processing? time --- 2010-02-09_04:10:18
?? Found the right date - continue
Troubles finding level? 100
 above ground.
Problems first occur at (?? 1,?? 1)
Surface pressure =??? NaN hPa.
Error_in_finding_100_hPa_up


==============================================


Please help me, what to do to solve this problem.
Thank you..
?
Regards,
Ari
 Maryadi
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From apattantyus2008 at my.fit.edu  Fri Jul 15 10:52:16 2011
From: apattantyus2008 at my.fit.edu (Andre Pattantyus)
Date: Fri, 15 Jul 2011 10:52:16 -0600
Subject: [Wrf-users] WRF DFFA OBS_DOMAIN format
Message-ID: <CAJacSbUTAkGLGOTv7WOKx4O5uw3kPWaCgq5MyT92OY4n800_aA@mail.gmail.com>

Hi all,

I am having trouble finding out how to format observation data correctly in
fdda. I have my own example set to go off of and I made a new OBS_DOMAIN
with only one sounding in it. When I run wrf however I get an error when the
file gets read in during intialization when it looks for data in file. It
says something like error reading end of file. The documentation I found by
cindy bruyere from NCAR mentions that this is a necessary part of the file.
This data is not visible in either my example file I am working off of or
the example given by wrf, found here
http://www.mmm.ucar.edu/wrf/src/OBS_DOMAIN. So how do I correct this and fix
my obs_domain file so it is read in? Thanks.

Here is what my OBS_DOMAINS look like:

 20040119120000
     31.87   -106.70
   99001     Maybe more site info             UA MET  FROM KEPZ
   FM-35 TEMP                             1252.    T       F     32
     878.000       0.000    1252.000       0.000       2.400
0.000       1.450     129.000       0.528     129.000      90.000
0.000
     855.000       0.000    1466.000       0.000       6.000
0.000       4.700     129.000       2.092     129.000      71.000
0.000
     850.000       0.000    1513.000       0.000       6.000
0.000       5.129     129.000       2.392     129.000      70.000
0.000
     835.000       0.000    1659.000       0.000       5.800
0.000       5.440     129.000       1.560     129.000      61.000
0.000
     726.000       0.000    2785.000       0.000      -3.300
0.000       3.535     129.000       0.687     129.000      76.000
0.000
     700.000       0.000    3074.000       0.000      -3.100
0.000       2.417     129.000       0.880     129.000      54.000
0.000
     693.000       0.000    3153.000       0.000      -3.700
0.000       2.862     129.000       1.156     129.000      46.000
0.000
     681.000       0.000    3291.000       0.000      -3.500
0.000       3.264     129.000       1.522     129.000      16.000
0.000
     669.000       0.000    3431.000       0.000      -3.700
0.000       3.600     129.000       1.995     129.000      25.000
0.000
     660.000       0.000    3538.000       0.000      -3.300
0.000       3.926     129.000       2.454     129.000      10.000
0.000
     641.000       0.000    3768.000       0.000      -4.300
0.000       4.109     129.000       3.096     129.000      36.000
0.000
     629.000       0.000    3917.000       0.000      -4.700
0.000       3.598     129.000       2.914     129.000      23.000
0.000
     603.000       0.000    4246.000       0.000      -7.700
0.000       2.960     129.000       2.859     129.000      41.000
0.000
     566.000       0.000    4735.000       0.000     -10.900
0.000       5.144     129.000       0.000     129.000      31.000
0.000
     562.000       0.000    4790.000       0.000     -10.500
0.000       5.125     129.000      -0.448     129.000      10.000
0.000
     546.000       0.000    5011.000       0.000     -11.100
0.000       5.763     129.000      -2.212     129.000      14.000
0.000
     500.000       0.000    5680.000       0.000     -15.900
0.000       7.951     129.000      -2.130     129.000       9.000
0.000
     400.000       0.000    7320.000       0.000     -28.100
0.000      10.535     129.000      -7.377     129.000      13.000
0.000
     390.000       0.000    7502.000       0.000     -29.100
0.000      10.535     129.000      -7.377     129.000       6.000
0.000
     331.000       0.000    8652.000       0.000     -39.500
0.000      15.852     129.000      -7.392     129.000      27.000
0.000
     300.000       0.000    9320.000       0.000     -44.300
0.000      18.853     129.000      -6.862     129.000      20.000
0.000
     250.000       0.000   10520.000       0.000     -53.300
0.000      20.870     129.000      -5.592     129.000      22.000
0.000
     229.000       0.000   11078.000       0.000     -56.300
0.000      21.012     129.000      -1.838     129.000      24.000
0.000
     209.000       0.000   11659.000       0.000     -53.300
0.000      22.292     129.000       3.931     129.000      13.000
0.000
     200.000       0.000   11940.000       0.000     -55.300
0.000      21.785     129.000       3.841     129.000      10.000
0.000
     188.000       0.000   12335.000       0.000     -56.700
0.000      25.457     129.000       6.347     129.000       9.000
0.000
     167.000       0.000   13091.000       0.000     -55.500
0.000      23.094     129.000      -1.615     129.000       6.000
0.000
     150.000       0.000   13770.000       0.000     -60.300
0.000      17.937     129.000       1.569     129.000       6.000
0.000
     127.000       0.000   14802.000       0.000     -61.100
0.000      16.460     129.000       0.287     129.000       5.000
0.000
     107.000       0.000   15850.000       0.000     -66.100
0.000      12.920     129.000       3.462     129.000       5.000
0.000
     100.000       0.000   16260.000       0.000     -65.300
0.000      14.411     129.000       3.861     129.000       6.000
0.000


Andre

-- 
Andre Pattantyus, Graduate Student Research Assistant
Marine and Environmental Systems, Florida Institute of Technology
150 W. University Blvd, Melbourne, FL 32901

Phone: (321) 674-8330 | Fax: (321) 674-7212 | Email: apattantyus2008 at fit.edu
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From done at ucar.edu  Fri Jul 15 14:00:33 2011
From: done at ucar.edu (James Done)
Date: Fri, 15 Jul 2011 14:00:33 -0600
Subject: [Wrf-users] Regional Climate Prediction Session at AGU 2011
Message-ID: <4E209C61.1080404@ucar.edu>


Dear All

We invite you to submit abstracts to our session on Regional Climate
Prediction at High Resolution at the American Geophysical Union Fall
Meeting, 5-9 Dec 2011, San Francisco, CA.

http://sites.agu.org/fallmeeting/ Abstract Deadline: 4th Aug.

Session Details:

GC09: Regional Climate Modeling 3. Regional Climate Prediction at High
Resolution
Sponsor: Global Environmental Change (GC)
Co-Sponsor(s): Atmospheric Sciences (A), Earth and Space Science
Informatics (IN), Public Affairs (PA)

Convener(s):
1. Greg Holland, NCAR
2. Howard Kunreuther, Wharton, University of Pennsylvania
3. William Skamarock, NCAR


Description:

Regional climate predictions at high resolution and decadal time scales
are needed by industry, government and society to enable sufficient
understanding and mitigate future costs and disruptions. This exciting
session will present the latest scientific results and applications in
high resolution climate prediction. Presentations are invited on:
predictions of regional climate and high-impact weather statistics on
decadal time scales, including uncertainty; coupled data assimilation
for regional coupled prediction systems; coupled regional Earth system
processes; statistical downscaling, and societal decision support tools.
This session will stimulate interaction between diverse areas of
expertise and promote novel collaboration.

Many thanks,
James Done


From apattantyus2008 at my.fit.edu  Fri Jul 15 13:32:51 2011
From: apattantyus2008 at my.fit.edu (Andre Pattantyus)
Date: Fri, 15 Jul 2011 13:32:51 -0600
Subject: [Wrf-users] WRF DFFA OBS_DOMAIN format
Message-ID: <CAJacSbUrm-NJ+pZr4M72qToCvh3YA4nL-09xmPC=yenujLstJw@mail.gmail.com>

I found my error - header formatting was off a bit.

-- 
Andre Pattantyus, Graduate Student Research Assistant
Marine and Environmental Systems, Florida Institute of Technology
150 W. University Blvd, Melbourne, FL 32901

Phone: (321) 674-8330 | Fax: (321) 674-7212 | Email: apattantyus2008 at fit.edu
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From ar.ragi at gmail.com  Sat Jul 23 22:13:48 2011
From: ar.ragi at gmail.com (Ragi A.R)
Date: Sun, 24 Jul 2011 09:43:48 +0530
Subject: [Wrf-users] SCM Help
Message-ID: <CAMVLxRRAqYp-07WcuK36rCYJGk5EUr=XVeh1oA5f-FMK+gfZBQ@mail.gmail.com>

Dear WRF Users,

Did anyone tried generating input for SCM using make_scm_forcing.ncl?
The "GABLS_II_forcing.txt" is for 1999 case which generate forcing for 1999.
I wanted to generate forcing input for 2000.
>From where I will get input for it?

Thanks in advance
*-- *
*************************************************************************
*Regards,*
*A.R.Ragi*
*Research Scholar
*
*CAS, IIT Delhi*

*************************************************************************
*"I want to know how God created this world.
 I am not interested in this or that phenomenon.
 I want to know, his thought, the rest are details."
---Albert Einstein*

*************************************************************************
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From jiwen.fan at pnnl.gov  Sun Jul 24 15:58:38 2011
From: jiwen.fan at pnnl.gov (Fan, Jiwen)
Date: Sun, 24 Jul 2011 14:58:38 -0700
Subject: [Wrf-users] Young Scientist Forum in 2011 IYC O3 and Climate Change
	Symposium
In-Reply-To: <CA461949.106C3%jiwen.fan@pnl.gov>
Message-ID: <CA51E39E.1594%jiwen.fan@pnnl.gov>

Apologies for cross-posting...

Dear colleagues:
We are organizing a Young Scientist Forum in a symposium titled "Protecting the stratospheric ozone layer - A successful collaboration of scientists, policy makers, industry, and intergovernmental agencies: Can lessons learned help us deal with climate changes?" to be held from Nov. 7-10, 2011, in Washington, DC, to celebrate the 2011 United Nations International Year of Chemistry (IYC). The symposium will include presentations and working sessions that 1) review and update stratospheric ozone layer and climate-change research, 2) the development and assessment of policies to mitigate stratospheric ozone loss and climate change, 3) possible parallels and relevant lessons learned that might benefit climate change science and policy, and 4) communication of climate change to the public. A detailed description of the symposium can be found at the meeting's official web site (http://www.2011-iyc-o3.org/). The American Meteorological Society (AMS), American Geophysical Union (AGU), and American Chemical Society (ACS) are co-sponsors for the symposium. International co-sponsors for this event include the World Meteorological Organization (WMO) and United Nations Environment Programme (UNEP). Drs. Mario Molina (1995 Chemistry Nobel Price Winner), Ralph Cicerone (President of National Academy of Science), Susan Solomon (Winner of the National Medal of Science), and Bob Watson (former IPCC Chair) will deliver keynotes at the symposium. There will be participations from White House and Congressional staff, including Department of State Deputy Assistant Secretary for Environment.

The Young Scientist Forum will include both oral and poster presentations on the subjects of research in atmospheric sciences and climate change and integration between science and policy. NSF and DOE have provided funding to support young scientists to attend the symposium, and we anticipate an attendance of more than 50 young scientists at the Young Scientist Forum, including non-tenured faculty, post docs, and graduate students.  The application form for the travel grants can be found at the meeting's website.

Look forward to seeing you in the symposium.

Jiwen Fan
On behalf of the organizers of Young Scientist Forum in 2011 IYC O3 and Climate Change Symposium (Jiwen Fan, PNNL, Trude Storelvmo, Yale Univ., and Annmarie G. Carlton, Rutgers Univ.)


----
Jiwen Fan, Ph.D.
Scientist
Atmospheric Science & Global Change Division
Pacific Northwest National Laboratory
PO Box 999, MSIN K9-24
Richland, WA 99352
509/375-2116 (o)
Jiwen.fan at pnl.gov
--



From jiwen.fan at pnnl.gov  Sun Jul 24 23:23:23 2011
From: jiwen.fan at pnnl.gov (Fan, Jiwen)
Date: Sun, 24 Jul 2011 22:23:23 -0700
Subject: [Wrf-users] The Fourth Symposium on Aerosol-Cloud-Climate
 Interactions at 92nd AMS Annual Meeting
In-Reply-To: <CA51E39E.1594%jiwen.fan@pnnl.gov>
Message-ID: <CA524BDB.15AA%jiwen.fan@pnnl.gov>

Dear Colleagues,

We would like to bring your attention to the Fourth Symposium on Aerosol-Cloud-Climate Interactions  <http://ams.confex.com/ams/92Annual/4aerocloud/papers/index.cgi>  at the upcoming 92nd American Meteorological Society Annual Meeting (January 22-26, 2012).  We invite papers on observational, modeling, instrumentation and/or laboratory studies related to the topic. Particularly, we will organize sessions in Aerosol-Cloud Interactions from Cloud-Scale to large-Scale Circulation. Please feel free to forward the invitation to your colleagues who might be interested in submitting an abstract to this symposium.

The abstract submission is due pretty soon on August 1st. Below is the link to submit your abstract:
 http://ams.confex.com/ams/92Annual/4aerocloud/papers/index.cgi?username=195364&password=825550

Sorry for cross-posting.

Jiwen

On behalf of the organizers of the Fourth Symposium on Aerosol-Cloud-Climate Interactions
----
Jiwen Fan, Ph.D.
Scientist
Atmospheric Science & Global Change Division
Pacific Northwest National Laboratory
PO Box 999, MSIN K9-24
Richland, WA 99352
509/375-2116 (o)
Jiwen.fan at pnl.gov

From mmkamal at uwaterloo.ca  Wed Jul 20 13:05:37 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Wed, 20 Jul 2011 15:05:37 -0400
Subject: [Wrf-users] Does anyone modified run_wrfpost/run_wrfpostandgrads
 (WPP) script for multiple time steps
Message-ID: <20110720150537.472043s2uhrvb7s4@www.nexusmail.uwaterloo.ca>

Hi All,


I was wondering whether anyone has already modified the  
run_wrfpost/run_wrfpostandgrads (WPP) script to read history file with  
multiple time steps or not. If so, then could you please share with me.


Thanks
Kamal











From reenb at meteo.psu.edu  Fri Jul 15 14:55:24 2011
From: reenb at meteo.psu.edu (Brian Reen)
Date: Fri, 15 Jul 2011 16:55:24 -0400
Subject: [Wrf-users] WRF DFFA OBS_DOMAIN format
In-Reply-To: <CAJacSbUTAkGLGOTv7WOKx4O5uw3kPWaCgq5MyT92OY4n800_aA@mail.gmail.com>
References: <CAJacSbUTAkGLGOTv7WOKx4O5uw3kPWaCgq5MyT92OY4n800_aA@mail.gmail.com>
Message-ID: <4E20A93C.8080403@meteo.psu.edu>

Andre,
It looks like you are specifying that there are 32 levels in the 
observation, but only providing 31 levels.  Try changing 32 to 31 in the 
header (at the end of the line that starts with "FM-35 TEMP").

Also, it looks like you have your temperatures in the wrong units.  I 
believe the temperature should be in K, so the lowest level in your ob 
has a temperature of 2.4 K.


You may want to format the obs for input to OBSGRID 
(http://www.mmm.ucar.edu/wrf/users/docs/user_guide_V3/users_guide_chap7.htm) 
so that it can do QC, etc., and then it will output the OBS_DOMAIN file. 
  For information on the data format to put into OBSGRID see section 
6.12 in:
http://www.mmm.ucar.edu/mm5/documents/MM5_tut_Web_notes/OA/OA.htm

Thanks,
Brian

On 7/15/2011 12:52 PM, Andre Pattantyus wrote:
> Hi all,
>
> I am having trouble finding out how to format observation data correctly in
> fdda. I have my own example set to go off of and I made a new OBS_DOMAIN
> with only one sounding in it. When I run wrf however I get an error when the
> file gets read in during intialization when it looks for data in file. It
> says something like error reading end of file. The documentation I found by
> cindy bruyere from NCAR mentions that this is a necessary part of the file.
> This data is not visible in either my example file I am working off of or
> the example given by wrf, found here
> http://www.mmm.ucar.edu/wrf/src/OBS_DOMAIN. So how do I correct this and fix
> my obs_domain file so it is read in? Thanks.
>
> Here is what my OBS_DOMAINS look like:
>
>   20040119120000
>       31.87   -106.70
>     99001     Maybe more site info             UA MET  FROM KEPZ
>     FM-35 TEMP                             1252.    T       F     32
>       878.000       0.000    1252.000       0.000       2.400
> 0.000       1.450     129.000       0.528     129.000      90.000
> 0.000
>       855.000       0.000    1466.000       0.000       6.000
> 0.000       4.700     129.000       2.092     129.000      71.000
> 0.000
>       850.000       0.000    1513.000       0.000       6.000
> 0.000       5.129     129.000       2.392     129.000      70.000
> 0.000
>       835.000       0.000    1659.000       0.000       5.800
> 0.000       5.440     129.000       1.560     129.000      61.000
> 0.000
>       726.000       0.000    2785.000       0.000      -3.300
> 0.000       3.535     129.000       0.687     129.000      76.000
> 0.000
>       700.000       0.000    3074.000       0.000      -3.100
> 0.000       2.417     129.000       0.880     129.000      54.000
> 0.000
>       693.000       0.000    3153.000       0.000      -3.700
> 0.000       2.862     129.000       1.156     129.000      46.000
> 0.000
>       681.000       0.000    3291.000       0.000      -3.500
> 0.000       3.264     129.000       1.522     129.000      16.000
> 0.000
>       669.000       0.000    3431.000       0.000      -3.700
> 0.000       3.600     129.000       1.995     129.000      25.000
> 0.000
>       660.000       0.000    3538.000       0.000      -3.300
> 0.000       3.926     129.000       2.454     129.000      10.000
> 0.000
>       641.000       0.000    3768.000       0.000      -4.300
> 0.000       4.109     129.000       3.096     129.000      36.000
> 0.000
>       629.000       0.000    3917.000       0.000      -4.700
> 0.000       3.598     129.000       2.914     129.000      23.000
> 0.000
>       603.000       0.000    4246.000       0.000      -7.700
> 0.000       2.960     129.000       2.859     129.000      41.000
> 0.000
>       566.000       0.000    4735.000       0.000     -10.900
> 0.000       5.144     129.000       0.000     129.000      31.000
> 0.000
>       562.000       0.000    4790.000       0.000     -10.500
> 0.000       5.125     129.000      -0.448     129.000      10.000
> 0.000
>       546.000       0.000    5011.000       0.000     -11.100
> 0.000       5.763     129.000      -2.212     129.000      14.000
> 0.000
>       500.000       0.000    5680.000       0.000     -15.900
> 0.000       7.951     129.000      -2.130     129.000       9.000
> 0.000
>       400.000       0.000    7320.000       0.000     -28.100
> 0.000      10.535     129.000      -7.377     129.000      13.000
> 0.000
>       390.000       0.000    7502.000       0.000     -29.100
> 0.000      10.535     129.000      -7.377     129.000       6.000
> 0.000
>       331.000       0.000    8652.000       0.000     -39.500
> 0.000      15.852     129.000      -7.392     129.000      27.000
> 0.000
>       300.000       0.000    9320.000       0.000     -44.300
> 0.000      18.853     129.000      -6.862     129.000      20.000
> 0.000
>       250.000       0.000   10520.000       0.000     -53.300
> 0.000      20.870     129.000      -5.592     129.000      22.000
> 0.000
>       229.000       0.000   11078.000       0.000     -56.300
> 0.000      21.012     129.000      -1.838     129.000      24.000
> 0.000
>       209.000       0.000   11659.000       0.000     -53.300
> 0.000      22.292     129.000       3.931     129.000      13.000
> 0.000
>       200.000       0.000   11940.000       0.000     -55.300
> 0.000      21.785     129.000       3.841     129.000      10.000
> 0.000
>       188.000       0.000   12335.000       0.000     -56.700
> 0.000      25.457     129.000       6.347     129.000       9.000
> 0.000
>       167.000       0.000   13091.000       0.000     -55.500
> 0.000      23.094     129.000      -1.615     129.000       6.000
> 0.000
>       150.000       0.000   13770.000       0.000     -60.300
> 0.000      17.937     129.000       1.569     129.000       6.000
> 0.000
>       127.000       0.000   14802.000       0.000     -61.100
> 0.000      16.460     129.000       0.287     129.000       5.000
> 0.000
>       107.000       0.000   15850.000       0.000     -66.100
> 0.000      12.920     129.000       3.462     129.000       5.000
> 0.000
>       100.000       0.000   16260.000       0.000     -65.300
> 0.000      14.411     129.000       3.861     129.000       6.000
> 0.000
>
>
> Andre
>
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users


From ebeigi3 at tigers.lsu.edu  Mon Jul 25 16:19:12 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Mon, 25 Jul 2011 17:19:12 -0500
Subject: [Wrf-users] Metgird.exe error
Message-ID: <CADwy=L+Mp4o7wj9z6shRLdp9BxvXqYCC_s7VszgeSnWqSfOjzQ@mail.gmail.com>

Dear  Sir/Madam,

I am using ifort and icc version 11 on linux redhat 6, i suuccesfully
installed wrf and wps on parallel processing (dm) option , but when i run
metgrid.exe it takes long time to run that can not do it,
Processing domain 1 of 1:

any solution will be appreciated in advanced.
-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From johnsonp at ucar.edu  Thu Jul 28 13:27:01 2011
From: johnsonp at ucar.edu (Pam Johnson)
Date: Thu, 28 Jul 2011 13:27:01 -0600
Subject: [Wrf-users] CIRES job posting
Message-ID: <4E31B805.3010807@ucar.edu>

Hi,

The University of Colorado is recruiting a CIRES Research Associate with 
expertise in statistical post-processing and background in ensemble 
forecasting and/or data assimilation. The job is in the Global Systems 
Division of NOAA?s Earth System Research Lab in Boulder. If you are 
interested, the job announcement is posted on the CIRES Jobs site, 
http://cires.colorado.edu/jobs/ , under "Statistical Post-Processing" 
(GSD-1, position # 813447). Please pass this message to anyone who may 
be interested.

Thank you, and sorry for multiple emails from different lists.

Jon Rush
Associate Director for Administration
Cooperative Institute for Research in Environmental Sciences
University of Colorado at Boulder


From jiwen.fan at pnnl.gov  Wed Aug  3 00:14:00 2011
From: jiwen.fan at pnnl.gov (Fan, Jiwen)
Date: Tue, 2 Aug 2011 23:14:00 -0700
Subject: [Wrf-users] Last reminder- AMS meeting special session:
 Aerosol-Cloud Interactions from Cloud-Scale to Large-Scale Circulation
Message-ID: <CA5E3538.17DB%jiwen.fan@pnnl.gov>

Dear Colleagues,

The AMS special session: Aerosol-Cloud Interactions from Cloud-Scale to Large-Scale Circulation at Fourth Symposium on Aerosol-Cloud-Climate Interactions of the 2012 American Meteorological Society Meeting (22-26 January 2012, New Orleans, Louisiana) is now available for you to choose while submitting your abstract. For those who have submitted abstracts, you may want to contact us if your title and abstract are not obviously related to this topic but want to have your presentation assigned to this session.

We invite papers on observational, modeling, instrumentation and/or laboratory studies. The deadline to submit an abstract has been extended to 8 August 2011. Please consider joining us, and also please pass this email on to others who may be interested!

Our confirmed invited speakers are V. Ramanathan, Bill Cotton, Joyce Penner, and Chien Wang.

Look forward to seeing you at New Orleans.

Jiwen Fan  & Leo Donner

--
Jiwen Fan
Atmospheric Science & Global Change Division
Pacific Northwest National Laboratory
PO Box 999, MSIN K9-24
Richland, WA 99352
509/375-2116 (o)
Jiwen.fan at pnl.gov

--
Leo Donner
Geophysical Fluid Dynamics Laboratory/NOAA
Princeton University Forrestal Campus
201 Forrestal Rd.
Princeton, NJ 08540
(609) 452-6562
Leo.J.Donner at noaa.gov
.........................

From chenming at ucar.edu  Wed Aug  3 11:53:13 2011
From: chenming at ucar.edu (Ming Chen)
Date: Wed, 03 Aug 2011 11:53:13 -0600
Subject: [Wrf-users] fwd:  Announcement for upcoming conference
Message-ID: <4E398B09.7040105@ucar.edu>

Dear Colleague,

EPRI and Air & Waste Management Associati on are o uture Air Quality 
Model Development Needs to be held on September 12 & 13, 2011 in 
Washington, DC. The agenda is as follows:
Keynote Speaker: John Seinfeld, California Institute of Technology

1. Homogeneous-Phase Chemistry
Ron Cohen, University of California Berkeley
Dick Derwe nt, Rdsc

2. Heterogeneous-Phase Chemistry (including Inorganic and Organic 
Aqueous-Phase Chemistry)
Hartmut Herrmann, Leibniz Institute for Tropospheric Research
Barbara Turpin, Rutgers University

3. Organic Particulate Matter: Formation and Aging of Secondary Organic 
Aerosol
Prakash Bhave, US Environmental Protection Agency
Allen Robinson, Carnegie Mellon University

4. Meteorological Processes Affecting Air Quality
Jerome Fast, Pacific Northwest National Laboratory
Leiming Zhang, Environment CanadaThis workshop is designed to bring 
together leading researchers from academia, government, and private 
institutions, industry, and other stakeholders to brainstorm on various 
model development needs and develop a comprehensive research agenda that 
can be used by the community to help guide research plans and promote 
collaboration among researchers. The focus of this two-day workshop is 
limited to the use of atmospheric models to support regional-scale air 
quality applications, such as forecasting or control strategy development.

On behalf of the steering committee, we would like to invite you to 
participate and contribute to the success of the workshop.

LEARN MORE OR REGISTER ONLINE HERE 
<http://cts.vresp.com/c/?AirWasteManagementAs/b42c14fa4e/906c2f3e85/1fc55d7f0d/iKey=S136310>or 
follow this link: 
http://cts.vresp.com/c/?AirWasteManagementAs/b42c14fa4e/906c2f3e85/1fc55d7f0d/iKey=S136310

Stuart McKeen
ESRL/NOAA, Boulder, CO
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From antonio.parodi at cimafoundation.org  Wed Aug  3 15:31:29 2011
From: antonio.parodi at cimafoundation.org (antonio.parodi at cimafoundation.org)
Date: Wed, 3 Aug 2011 23:31:29 +0200
Subject: [Wrf-users] AGU 2011 (deadline august 4th): last minute
 reminder NG12: Scaling and Prediction of Climate Extremes and Regime
 Transitions
In-Reply-To: <4E3924C2.6090206@cimafoundation.org>
References: <4E3924C2.6090206@cimafoundation.org>
Message-ID: <4bb7d134b5b925f8c05f903c002f2b85.squirrel@mail.cimafoundation.org>

 Dear Colleague,

 We would like to invite you to submit your contribution to the session
 (deadline august 4th, tomorrow):

 NG12: Scaling and Prediction of Climate Extremes and Regime Transitions

 Sponsor: Nonlinear Geophysics (NG)
 Co-Sponsor(s): Atmospheric Sciences (A), Global Environmental Change (GC),
 Hydrology (H), Natural Hazards (NH)

 The invited speakers are:

 Efi Foufoula-Georgiou (St. Anthony Falls Laboratory, University of
 Minnesota)

 Auroop R. Ganguly (GIST Group, CSED, Oak Ridge National Laboratory)

 Dimitris Giannakis (Center for Atmosphere Ocean Science (CAOS), Courant
 Institute of Mathematical Sciences)

 William K. Lau (NASA)

 You can find more session information at the web site:

 http://sites.agu.org/fallmeeting/scientific-program/session-search/573

 Abstracts should be submitted through the AGU website at the following
 web address:

 http://sites.agu.org/fallmeeting/announcements/abstract-submission-open/

 Sorry for cross-posting.

 Best regards

 Ana Barros
 Alin-Andrei Carsteanu
 Joshua Hacker
 Antonio Parodi


 NG12: Scaling and Prediction of Climate Extremes and Regime Transitions

 Description:

 This session seeks contributions concerning modeling and observational
 studies of multiscale Climate processes including Hydrometeorology and
 Hydrology defined broadly (e.g. from global to regional scale down to
 cloud formation and precipitation, runoff, groundwater and streamflow)
 which have a direct impact on predictability of extreme events (heat
 waves, floods, droughts) and regime transitions. Studies over a wide range
 of temporal and spatial scales including nonlinear models, scaling
 analysis, multifractals and cascades are encouraged. Papers focusing on
 the detection and fingerprinting of scaling behavior associated with model
 boundary conditions, threshold physics, and model or observing system
 structure are welcome.



From jennie.thomas at latmos.ipsl.fr  Fri Aug  5 08:05:39 2011
From: jennie.thomas at latmos.ipsl.fr (Jennie Thomas)
Date: Fri, 5 Aug 2011 16:05:39 +0200
Subject: [Wrf-users] =?windows-1252?q?Post-doctoral_research_position_on_t?=
 =?windows-1252?q?he_=91Regional_modelling_of_short-lived_climate_forcers?=
 =?windows-1252?q?=92_located_in_Paris=2C_France?=
Message-ID: <CA83F951-967F-4F70-A30E-083381949BE3@latmos.ipsl.fr>

Attached is the announcement one of several postdoc positions available in my lab.  I'm happy to answer informal questions about the position.  Please send CVs to Kathy Law and Jean-Christophe Raut.

************************************************************************

Post-doctoral research position on the ?Regional modelling of short-lived climate forcers? at Laboratoire Atmosph?res, Milieux, Observations Spatiales (LATMOS), Universit? Pierre et Marie Curie/CNRS, Paris, France

************************************************************************

A research position is available for 2-3 years to work on the ECLIPSE (Evaluating the Climate and Air Quality Impacts of Short-Lived Pollutants) project recently been accepted for funding by the European Commission. The main goal of ECLIPSE, which involves several European groups, is to develop and assess effective emission abatement strategies for short-lived climate forcers, notably tropospheric ozone and black carbon, in order to provide sound scientific advice on measures that mitigate climate change and improve air quality at the same time. A key part of the work will be to evaluate the strengths and weaknesses of global chemistry-climate models used to assess the climate and air quality impacts of short-lived climate forcers. In particular, the work at LATMOS will be to carry out high-resolution case studies using the WRF-Chem model over major emission regions. Long-range transport between pollution source and receptor regions (such as the Arctic) will also be investigated. Process based analysis of ozone and aerosols through comparison with observations will be used to evaluate model performance.

Applications are invited from post-doctoral researchers with a PhD in environmental or atmospheric sciences and ideally experience in running chemical-aerosol models and data analysis. Candidates should have a good working knowledge of computer programming (Unix, Fortran, IDL/Matlab/NCL), be proficient in English and willing to work in an international framework attending project meetings and conferences. The position is available from late-autumn 2011.

To apply send a detailed CV (including publication list), a letter of motivation (in English) and email addresses of 3 referees to Kathy.Law at latmos.ipsl.fr and Jean-Christophe.Raut at latmos.ipsl.fr.

Review of the applications will start in mid-September 2011 and the position is open until filled. LATMOS ((http://www.latmos.ipsl.fr/ ) is located in central Paris at the Jussieu campus of Universite Pierre et Marie Curie (http://www.upmc.fr/en/index.html ). It is a joint CNRS/university laboratory which is also part of the Institut Pierre Simon Laplace (http://www.ipsl.fr/). It carries out research into a wide range of topics related to atmospheric science.

Cheers,
Jennie Thomas

_________________
Laboratoire Atmosph?res, Milieux, Observations Spatiales
LATMOS
Tour 45, Couloir 45-46, 3e et 4e ?tages (bo?te 102)
Universit? Pierre et Marie Curie
4 place Jussieu
75252 Paris Cedex 05
France
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From jennie.thomas at latmos.ipsl.fr  Fri Aug  5 08:07:29 2011
From: jennie.thomas at latmos.ipsl.fr (Jennie Thomas)
Date: Fri, 5 Aug 2011 16:07:29 +0200
Subject: [Wrf-users] Post-Doctoral Positions in the field of atmospheric
	composition and its evolution located in Paris, France
Message-ID: <E6520C54-57E9-400D-8CAE-900A9FF706F1@latmos.ipsl.fr>

Attached is the announcement for two postdoc positions available in my lab.  I'm happy to answer informal questions about the positions.  Please send CVs to Kathy Law and Claire Granier.


Post-Doctoral Positions in the field of atmospheric composition and its evolution			   

The LATMOS laboratory, located at the University Pierre and Marie Curie in the center of Paris, invites applications for 2 postdoctoral researcher positions funded by the European Commission. The contracts will start between autumn 2011 and early 2012.
The proposed work will contribute to the following European projects:
- ACCESS (Arctic Climate Change, Economy and Society) running from 2011 to 2015 (see http://www.upmc.fr/en/press_office/press_releases/arctic_ocean_under_close_surveillance_at_upmc.html). The goals of the ACCESS project are to evaluate climatic impacts in the Arctic on marine transportation, fisheries, marine mammals and the extraction of hydrocarbons for the next 20 years, with particular attention to environmental sensitivities and sustainability. The Arctic is a region undergoing unprecedented changes. The work at LATMOS will focus on quantification of the impact of local emissions (shipping, resource extraction) and remote mid-latitude pollution on present-day and future air composition in the Arctic. The LATMOS group will also participate in an aircraft campaign which will provide data on emissions and plume dispersion from shipping and oil/gas extraction. The post-doctoral work will focus on global and north-hemispheric scales, and links with regional modeling work.
- MACC-II (Monitoring Atmospheric Composition and Climate): http://www.gmes-atmosphere.eu/gmes-atmosphere.eu ? planned to start early 2012 for 3 years. The goal of MACC-II is to provide state of the art simulations of atmospheric composition for recent years using models run on the operational system at ECMWF, as a well as results for monitoring present conditions and provision of chemical forecasts, for example, for field campaigns. The available position will focus on the quantification, harmonization and evaluation of surface emissions at the global and regional scales, the participation in a pilot study of the use of inverse modeling techniques to improve emissions in the context of the MACC-II modeling work. The LATMOS group will also participate in the development of a new emissions database for atmospheric constituents, and will work with other European groups on interconnections between different databases for emissions, observations and modeling results.
Qualifications and requirements for the positions:
- PhD in atmospheric sciences or in a similar field
- Experience in atmospheric chemistry modeling / analysis of atmospheric observations / surface emissions
- Programming skills in Unix/Linux, Fortran, and scientific visualization programs (Matlab, IDL or NCL)
- Good English language skills
- Willingness to work in an international framework, and to attend the different meetings organized within each project.

Review of the applications will start mid-September 2011, and will continue until the positions are filled. The positions are available for 2-3 years. To apply, send a detailed CV (including a list of publications), a letter of motivation in English, and the email addresses of two academic referees to: 
Claire Granier: claire.granier at latmos.ipsl.fr
and
Kathy Law: kathy.law at latmos.ipsl.fr


Cheers,
Jennie Thomas

_________________
Laboratoire Atmosph?res, Milieux, Observations Spatiales
LATMOS
Tour 45, Couloir 45-46, 3e et 4e ?tages (bo?te 102)
Universit? Pierre et Marie Curie
4 place Jussieu
75252 Paris Cedex 05
France
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From mashfaq at ornl.gov  Thu Aug  4 21:30:52 2011
From: mashfaq at ornl.gov (Ashfaq, Moetasim)
Date: Thu, 04 Aug 2011 23:30:52 -0400
Subject: [Wrf-users] Postdoctoral Researcher in Regional Climate Modeling at
	ORNL
Message-ID: <19BF3DE9435EFC4F8AD75ADB7F030A4E0AA45874FF@EXCHMB.ornl.gov>

Postdoctoral Researcher in Regional Climate Modeling

The Computational Earth Sciences group of the Computer Science and Mathematics Division at Oak Ridge National Laboratory seeks to hire a Post Doctoral Researcher to participate in research involving the development of approaches to investigate natural and anthropogenic hydroclimate variability at regional and local scales. Using a suite of global-to-regional scale climate models and observational datasets, this research will improve the quantitative understanding of nature of interactions between fine-scale hydroclimate processes and large-scale climate forcing, and role of such interactions in the occurrence of high-intensity low-frequency hydro-climate extremes at multi-decadal time scales.
The successful candidate will be expected to:
1) Play a key role in the planning and execution of multi-model-driven ultra-high resolution global and regional climate modeling experiments
2) Analyze, present and publish research results in scientific conferences and peer-reviewed journals
3) Coordinate and collaborate with researchers at ORNL and other DOE National Labs.
 Minimum Qualification: Candidates must have received a PhD in Atmospheric and Oceanic Sciences or a related field within the past five years from an accredited college or university.
Required Skills:
1) Strong understanding of current climate modeling techniques with demonstrated expertise in the use and application of a Regional Climate Model.
2) Demonstrated ability to perform comprehensive analysis of large climate datasets through advanced data analysis techniques and evaluation matrices.
3) Excellent oral and written communication skills.
4) Good publications record in peer-reviewed journals.
5) Expertise in one of the programming languages such as Fortran, C, and analysis packages such as MATLAB, IDL, NCL.
Desired Skills:
1) Knowledge of North American climate and global monsoon systems
2) Experience in the use of Global Climate Models data
3) Experience in the use of climate models output in process-based hydrological applications and statistical hydrology
 We anticipate it to be a two years position, dependent on continuing funding. Applications will be accepted until the position is filled.
Technical Questions: For more information about this position please contact Dr. Moetasim Ashfaq (mashfaq at ornl.gov<mailto:mashfaq at ornl.gov>). Please reference this position title in your correspondence.
Interested candidates should apply online: https://www3.orau.gov/ORNL_TOppS/Posting/Details/174
Please refer to the following link for the application requirements:
http://www.orau.org/ornl/postdocs/ornl-pd-pm/application.htm
This appointment is offered through the ORNL Postgraduate Research Participation Program and is administered by the Oak Ridge Institute for Science and Education (ORISE). The program is open to all qualified U.S. and non-U.S. citizens without regard to race, color, age, religion, sex, national origin, physical or mental disability, or status as a Vietnam-era veteran or disabled veteran.

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From mmkamal at uwaterloo.ca  Fri Aug  5 11:03:16 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Fri, 05 Aug 2011 13:03:16 -0400
Subject: [Wrf-users] What are the  CESM variable needed to run WRF
Message-ID: <20110805130316.99091rq9dnvun800@www.nexusmail.uwaterloo.ca>

Hi All,

I would like to use CESM output as ILBC for WRF. Could anybody please  
tell me what are the CESM (Both CAM & CLM) variables needed to run WRF.


Thanks in advance
Kamal






From ebeigi3 at tigers.lsu.edu  Sun Aug  7 12:55:55 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Sun, 7 Aug 2011 14:55:55 -0400
Subject: [Wrf-users] ingesting CCSM3 to WRF?
Message-ID: <CADwy=LJAZXGudLMmJRiE9O4yYvfhVQJ=nHoncX3wa=U0A0V3qw@mail.gmail.com>

Dear Sir/Madam,

i am using CAM2WRF , to changing output of CAM (CCSM3) into WRF. the CAM2WRF
utility is written for changing both cam and clm data, but i have only cam
data. does anyone has modified CAM2WRF code  which only considers cam data.
any help will be appreciated in advance

-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From sstolaki at geo.auth.gr  Mon Aug  8 04:36:43 2011
From: sstolaki at geo.auth.gr (Stavroula Stolaki)
Date: Mon, 08 Aug 2011 13:36:43 +0300
Subject: [Wrf-users] a question on RIP
Message-ID: <20110808133643.24136yn06jcefj23@webmail.auth.gr>

Hi all,

I am trying to use RIP in order to plot values of precipitation and  
surface pressure for the domain of Europe. I would like to set two  
different colors for land and water in my maps and at the same time  
overlay on this map the values (in colored contours) of total  
precipitation for the past 3 hours. I find difficulty in doing this  
though, since the land-water map covers the precipitation values in  
the output maps.

I attach part of my .in script:

feld=rtot3h; ptyp=hc; wdbr=0.05;smth=303;nsmm;cbeg=0.1;cmth=fill;>
    cosq=0.1,white,0.25,light.blue,0.5,light.purple,1,>
    light.cerulean,2,cyan,4,avocado,8,green,16,forest.green,>
    32,dark.green,64,med.gray,128,dark.gray;>
    hvbr=0; nmin;nmsg=true
feld=slp; ptyp=hc; cint=4;linw=1;pwlb=0;colr=red;pwlb=0;smth=303;nsmm
feld=map; ptyp=hb; mfco=cyan,lemon;outy=Earth..3L5;



Any help would be appreciated.

Thank you in advance.

Stavroula Stolaki, PhD Candidate.



From havadurumu at gmail.com  Mon Aug  8 12:24:41 2011
From: havadurumu at gmail.com (Abdullah Kahraman)
Date: Mon, 8 Aug 2011 21:24:41 +0300
Subject: [Wrf-users] a question on RIP
In-Reply-To: <20110808133643.24136yn06jcefj23@webmail.auth.gr>
References: <20110808133643.24136yn06jcefj23@webmail.auth.gr>
Message-ID: <CABmnfR+azp6P__SiabByS_rPUbYYOz3S6_cez5=2evZfNhaLvA@mail.gmail.com>

Hi Ms Stolaki,

You should just change the order the fields to be plotted, i.e. shift the
last line to the beginning to avoid the land/sea colors cover all other
fields, like this:


feld=map; ptyp=hb; mfco=cyan,lemon;outy=Earth..3L5;
feld=rtot3h; ptyp=hc; wdbr=0.05;smth=303;nsmm;cbeg=0.1;cmth=fill;>
   cosq=0.1,white,0.25,light.blue,0.5,light.purple,1,>
   light.cerulean,2,cyan,4,avocado,8,green,16,forest.green,>
   32,dark.green,64,med.gray,128,dark.gray;>
   hvbr=0; nmin;nmsg=true
feld=slp; ptyp=hc; cint=4;linw=1;pwlb=0;colr=red;pwlb=0;smth=303;nsmm


I hope this helps.
Best,
Abdullah.

*Abdullah KAHRAMAN*
M.Sc. Meteorological Engineer
Turkish State Meteorological Service
Ph.D. Candidate
Istanbul Technical University, Atmospheric Sciences Program


On Mon, Aug 8, 2011 at 13:36, Stavroula Stolaki <sstolaki at geo.auth.gr>wrote:

> Hi all,
>
> I am trying to use RIP in order to plot values of precipitation and
> surface pressure for the domain of Europe. I would like to set two
> different colors for land and water in my maps and at the same time
> overlay on this map the values (in colored contours) of total
> precipitation for the past 3 hours. I find difficulty in doing this
> though, since the land-water map covers the precipitation values in
> the output maps.
>
> I attach part of my .in script:
>
> feld=rtot3h; ptyp=hc; wdbr=0.05;smth=303;nsmm;cbeg=0.1;cmth=fill;>
>    cosq=0.1,white,0.25,light.blue,0.5,light.purple,1,>
>    light.cerulean,2,cyan,4,avocado,8,green,16,forest.green,>
>    32,dark.green,64,med.gray,128,dark.gray;>
>    hvbr=0; nmin;nmsg=true
> feld=slp; ptyp=hc; cint=4;linw=1;pwlb=0;colr=red;pwlb=0;smth=303;nsmm
> feld=map; ptyp=hb; mfco=cyan,lemon;outy=Earth..3L5;
>
>
>
> Any help would be appreciated.
>
> Thank you in advance.
>
> Stavroula Stolaki, PhD Candidate.
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
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From dbh409 at ku.edu  Mon Aug  8 19:55:42 2011
From: dbh409 at ku.edu (Huber, David)
Date: Tue, 9 Aug 2011 01:55:42 +0000
Subject: [Wrf-users] WRF Compilation Error
Message-ID: <A644457BC398E2478714678865618326080BD4@EXCH10-MBX-02.home.ku.edu>

Hello,

I'm having an issue compiling WRF V3.1.1 with the Intel compilers using a multi-processor (dmpar) build.  NCAR Graphics (6.0.0) and NetCDF (4.1.3) are also built with the Intel compilers. The configure.wrf file contents (minus comments) and a list of the environmental variables are shown at the end of this message.  The following is the first of several warning/undefined reference messages:


ifort -w -ftz -align all -fno-alias -fp-model precise  -FR -convert big_endian -c  -I/usr/local/include -I../ioapi_share diffwrf.f
diffwrf.f(1629): (col. 7) remark: LOOP WAS VECTORIZED.
diffwrf.f(1630): (col. 7) remark: LOOP WAS VECTORIZED.
diffwrf.f(1709): (col. 7) remark: LOOP WAS VECTORIZED.
diffwrf.f(1710): (col. 7) remark: LOOP WAS VECTORIZED.
diffwrf.f(1711): (col. 7) remark: LOOP WAS VECTORIZED.
diffwrf.f(1712): (col. 7) remark: LOOP WAS VECTORIZED.
diffwrf io_netcdf is being built now.
/usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
wrf_io.o: In function `ext_ncd_get_var_info_':
wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'


I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about.  I have successfully built WRF and WPS on this system before, but this is the first time I have tried it with everything compiled with icc and ifort.  Any suggestions would be much appreciated.

Thanks,

Dave


configure.wrf:


SHELL           =       /bin/sh
DEVTOP          =       `pwd`
LIBINCLUDE      =       .
.SUFFIXES: .F .i .o .f90 .c

COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
           -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
           -DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
           -DDA_CORE=$(WRF_DA_CORE) \

           -DEXP_CORE=$(WRF_EXP_CORE)


MAX_DOMAINS     =       21

CONFIG_BUF_LEN  =       32768


NATIVE_RWORDSIZE = 4

SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe

IO_GRIB_SHARE_DIR =

ESMF_COUPLING       = 0
ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o

ESMF_IO_INC         = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
ESMF_MOD_INC        =  $(ESMF_IO_INC)
ESMF_IO_DEFS        =
ESMF_TARGET         = esmf_time


LIBWRFLIB = libwrflib.a


DMPARALLEL      =        1
OMPCPP          =       # -D_OPENMP
OMP             =       # -openmp -fpp -auto
SFC             =       ifort
SCC             =       icc
DM_FC           =       mpif90 -f90=$(SFC)
DM_CC           =       mpicc -cc=$(SCC) -DMPI2_SUPPORT
FC              =        $(DM_FC)
CC              =       $(DM_CC) -DFSEEKO64_OK
LD              =       $(FC)
RWORDSIZE       =       $(NATIVE_RWORDSIZE)
PROMOTION       =       -i4
ARCH_LOCAL      =       -DNONSTANDARD_SYSTEM_FUNC
CFLAGS_LOCAL    =       -w -O3 -ip
LDFLAGS_LOCAL   =       -ip
CPLUSPLUSLIB    =
ESMF_LDFLAG     =       $(CPLUSPLUSLIB)
FCOPTIM         =       -O3
FCREDUCEDOPT    =       $(FCOPTIM)
FCNOOPT         =       -O0 -fno-inline -fno-ip
FCDEBUG         =       # -g $(FCNOOPT) -traceback
FORMAT_FIXED    =       -FI
FORMAT_FREE     =       -FR
FCSUFFIX        =
BYTESWAPIO      =       -convert big_endian
FCBASEOPTS      =       -w -ftz -align all -fno-alias -fp-model precise $(FCDEBUG) $(FORMAT_FREE) $(BYTESWAPIO)
MODULE_SRCH_FLAG =
TRADFLAG        =      -traditional
CPP             =      /lib/cpp -C -P
AR              =      ar
ARFLAGS         =      ru
M4              =      m4
RANLIB          =      ranlib
CC_TOOLS        =      $(SCC)

FGREP = fgrep -iq

ARCHFLAGS       =    $(COREDEFS) -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=4 \
                     $(ARCH_LOCAL) \
                     $(DA_ARCHFLAGS) \
                      -DDM_PARALLEL \

                       \
                      -DNETCDF \
                       \
                       \
                       \
                       \
                       \
                       \
                      -DGRIB1 \
                      -DINTIO \
                      -DLIMIT_ARGS \
                      -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
                      -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
                      -DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS          =    $(CFLAGS_LOCAL) -DDM_PARALLEL
FCFLAGS         =    $(FCOPTIM) $(FCBASEOPTS)
ESMF_LIB_FLAGS  =
ESMF_IO_LIB     =    $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
ESMF_IO_LIB_EXT =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
INCLUDE_MODULES =    $(MODULE_SRCH_FLAG) \
                     $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
                      -I$(WRF_SRC_ROOT_DIR)/main \
                      -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
                      -I$(WRF_SRC_ROOT_DIR)/external/io_int \
                      -I$(WRF_SRC_ROOT_DIR)/frame \
                      -I$(WRF_SRC_ROOT_DIR)/share \
                      -I$(WRF_SRC_ROOT_DIR)/phys \
                      -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
                       \

REGISTRY        =    Registry

LIB_BUNDLED     = \
                     -L$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 -lfftpack \
                     -L$(WRF_SRC_ROOT_DIR)/external/io_grib1 -lio_grib1 \
                     -L$(WRF_SRC_ROOT_DIR)/external/io_grib_share -lio_grib_share \
                     -L$(WRF_SRC_ROOT_DIR)/external/io_int -lwrfio_int \
                     $(ESMF_IO_LIB) \
                     $(ESMF_IO_LIB) \
                     $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
                     $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
                     $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o

LIB_EXTERNAL    = \

                     $(WRF_SRC_ROOT_DIR)/external/io_netcdf/libwrfio_nf.a -L/usr/local/lib -lnetcdff -lnetcdf

LIB             =    $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
LDFLAGS         =    $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
ENVCOMPDEFS     =
WRF_CHEM        =       0
CPPFLAGS        =    $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
NETCDFPATH      =    /usr/local
PNETCDFPATH     =

bundled:  wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack
external:  wrfio_nf   $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)

######################
externals: bundled external

gen_comms_serial :
        ( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )

module_dm_serial :
        ( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )

gen_comms_rsllite :
        ( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
          /bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )

module_dm_rsllite :
        ( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )

wrfio_nf :
        ( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
          make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          CC="$(SCC)" CFLAGS="$(CFLAGS)" \
          FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_pnf :
        ( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
          make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )



wrfio_grib_share :
        ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
          make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)

wrfio_grib1 :
        ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
          make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)

wrfio_grib2 :
        ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
          make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
          CPP="$(CPP)" \
          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
          FIXED="$(FORMAT_FIXED)" archive)

wrfio_int :
        ( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
          make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
          FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" \
          TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" all )

esmf_time :
        ( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
          make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
          CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

fftpack :
        ( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
          make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
        ( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
          FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
          CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
          $(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )


LN      =       ln -sf
MAKE    =       make -i -r
RM      =       rm -f


# These sub-directory builds are identical across all architectures

wrf_ioapi_includes :
        ( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
          $(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_esmf :
        ( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
          make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
          RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

#       There is probably no reason to modify these rules

.F.i:
        $(RM) $@
        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
        mv $*.i $(DEVTOP)/pick/$*.f90
        cp $*.F $(DEVTOP)/pick

.F.o:
        $(RM) $@
        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
        $(SED_FTN) $*.bb | $(CPP) > $*.f90
        $(RM) $*.b $*.bb
        if $(FGREP) '!$$OMP' $*.f90 ; then \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
          $(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
        else \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
          $(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
        fi


.F.f90:
        $(RM) $@
        $(SED_FTN) $*.F > $*.b
        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $@
        $(RM) $*.b


.f90.o:
        $(RM) $@
        $(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90

.c.o:
        $(RM) $@
        $(CC) -o $@ -c $(CFLAGS) $*.c

# A little more adventurous.  Allow full opt on
# mediation_integrate.o \
# shift_domain_em.o \
# solve_em.o  <-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
# mediation_feedback_domain.o : mediation_feedback_domain.F
# mediation_force_domain.o : mediation_force_domain.F
# mediation_interp_domain.o : mediation_interp_domain.F

# compile these without high optimization to speed compile
convert_nmm.o : convert_nmm.F
init_modules_em.o : init_modules_em.F
input_wrf.o : input_wrf.F
module_io.o : module_io.F
module_comm_dm.o : module_comm_dm.F
module_configure.o : module_configure.F
module_dm.o : module_dm.F
module_domain.o : module_domain.F
module_domain_type.o : module_domain_type.F
module_alloc_space.o : module_alloc_space.F
module_tiles.o : module_tiles.F
module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
module_initialize.o : module_initialize.F
module_physics_init.o : module_physics_init.F
module_initialize_b_wave.o : module_initialize_b_wave.F
module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
module_initialize_real.o : module_initialize_real.F
module_initialize_real.o: module_initialize_real.F
module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
module_integrate.o : module_integrate.F
module_io_mm5.o : module_io_mm5.F
module_io_wrf.o : module_io_wrf.F
module_si_io.o : module_si_io.F
module_state_description.o : module_state_description.F
output_wrf.o : output_wrf.F


NMM_NEST_UTILS1.o : NMM_NEST_UTILS1.F
solve_interface.o : solve_interface.F
start_domain.o : start_domain.F
start_domain_nmm.o : start_domain_nmm.F
start_em.o : start_em.F
wrf_auxhist10in.o : wrf_auxhist10in.F
wrf_auxhist10out.o : wrf_auxhist10out.F
wrf_auxhist11in.o : wrf_auxhist11in.F
wrf_auxhist11out.o : wrf_auxhist11out.F
wrf_auxhist1in.o : wrf_auxhist1in.F
wrf_auxhist1out.o : wrf_auxhist1out.F
wrf_auxhist2in.o : wrf_auxhist2in.F
wrf_auxhist2out.o : wrf_auxhist2out.F
wrf_auxhist3in.o : wrf_auxhist3in.F
wrf_auxhist3out.o : wrf_auxhist3out.F
wrf_auxhist4in.o : wrf_auxhist4in.F
wrf_auxhist4out.o : wrf_auxhist4out.F
wrf_auxhist5in.o : wrf_auxhist5in.F
wrf_auxhist5out.o : wrf_auxhist5out.F
wrf_auxhist6in.o : wrf_auxhist6in.F
wrf_auxhist6out.o : wrf_auxhist6out.F
wrf_auxhist7in.o : wrf_auxhist7in.F
wrf_auxhist7out.o : wrf_auxhist7out.F
wrf_auxhist8in.o : wrf_auxhist8in.F
wrf_auxhist8out.o : wrf_auxhist8out.F
wrf_auxhist9in.o : wrf_auxhist9in.F
wrf_auxhist9out.o : wrf_auxhist9out.F
wrf_auxinput10in.o : wrf_auxinput10in.F
wrf_auxinput10out.o : wrf_auxinput10out.F
wrf_auxinput11in.o : wrf_auxinput11in.F
wrf_auxinput11out.o : wrf_auxinput11out.F
wrf_auxinput1in.o : wrf_auxinput1in.F
wrf_auxinput1out.o : wrf_auxinput1out.F
wrf_auxinput2in.o : wrf_auxinput2in.F
wrf_auxinput2out.o : wrf_auxinput2out.F
wrf_auxinput3in.o : wrf_auxinput3in.F
wrf_auxinput3out.o : wrf_auxinput3out.F
wrf_auxinput4in.o : wrf_auxinput4in.F
wrf_auxinput4out.o : wrf_auxinput4out.F
wrf_auxinput5in.o : wrf_auxinput5in.F
wrf_auxinput5out.o : wrf_auxinput5out.F
wrf_auxinput6in.o : wrf_auxinput6in.F
wrf_auxinput6out.o : wrf_auxinput6out.F
wrf_auxinput7in.o : wrf_auxinput7in.F

wrf_auxinput7out.o : wrf_auxinput7out.F
wrf_auxinput8in.o : wrf_auxinput8in.F
wrf_auxinput8out.o : wrf_auxinput8out.F
wrf_auxinput9in.o : wrf_auxinput9in.F
wrf_auxinput9out.o : wrf_auxinput9out.F
wrf_bdyin.o : wrf_bdyin.F
wrf_bdyout.o : wrf_bdyout.F
wrf_ext_read_field.o : wrf_ext_read_field.F
wrf_ext_write_field.o : wrf_ext_write_field.F
wrf_fddaobs_in.o : wrf_fddaobs_in.F
wrf_histin.o : wrf_histin.F
wrf_histout.o : wrf_histout.F
wrf_inputin.o : wrf_inputin.F
wrf_inputout.o : wrf_inputout.F
wrf_restartin.o : wrf_restartin.F
wrf_restartout.o : wrf_restartout.F
wrf_tsin.o : wrf_tsin.F
nl_get_0_routines.o : nl_get_0_routines.F
nl_get_1_routines.o : nl_get_1_routines.F
nl_set_0_routines.o : nl_set_0_routines.F
nl_set_1_routines.o : nl_set_1_routines.F

convert_nmm.o \
init_modules_em.o \
module_dm.o \
module_fddaobs_rtfdda.o \
module_initialize.o \
module_initialize_b_wave.o \
module_initialize_hill2d_x.o \
module_initialize_quarter_ss.o \
module_initialize_real.o \
module_initialize_squall2d_x.o \
module_initialize_squall2d_y.o \
module_integrate.o \
module_io_mm5.o \
module_io_wrf.o \
module_si_io.o \
module_tiles.o \
output_wrf.o \
NMM_NEST_UTILS1.o \
solve_interface.o \
start_domain.o \
start_domain_nmm.o \
shift_domain_nmm.o \

start_em.o \
wrf_fddaobs_in.o \
wrf_tsin.o :
        $(RM) $@
        $(SED_FTN) $*.F > $*.b
        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
        $(RM) $*.b
        if $(FGREP) '!$$OMP' $*.f90 ; then \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
          $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
        else \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
          $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
        fi

module_sf_ruclsm.o : module_sf_ruclsm.F

module_sf_ruclsm.o :
        $(RM) $@
        $(SED_FTN) $*.F > $*.b
        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
        $(RM) $*.b
        if $(FGREP) '!$$OMP' $*.f90 ; then \
          echo COMPILING $*.F WITH OMP ; \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
          $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
        else \
          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
          $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
        fi

input_wrf.o \
module_domain.o \
module_domain_type.o \
module_physics_init.o \
module_io.o \

wrf_auxhist10in.o \
wrf_auxhist10out.o \
wrf_auxhist11in.o \
wrf_auxhist11out.o \
wrf_auxhist1in.o \
wrf_auxhist1out.o \
wrf_auxhist2in.o \
wrf_auxhist2out.o \
wrf_auxhist3in.o \
wrf_auxhist3out.o \
wrf_auxhist4in.o \
wrf_auxhist4out.o \
wrf_auxhist5in.o \
wrf_auxhist5out.o \
wrf_auxhist6in.o \
wrf_auxhist6out.o \
wrf_auxhist7in.o \
wrf_auxhist7out.o \
wrf_auxhist8in.o \
wrf_auxhist8out.o \
wrf_auxhist9in.o \
wrf_auxhist9out.o \
wrf_auxinput10in.o \
wrf_auxinput10out.o \
wrf_auxinput11in.o \
wrf_auxinput11out.o \
wrf_auxinput1in.o \
wrf_auxinput1out.o \
wrf_auxinput2in.o \
wrf_auxinput2out.o \
wrf_auxinput3in.o \
wrf_auxinput3out.o \
wrf_auxinput4in.o \
wrf_auxinput4out.o \
wrf_auxinput5in.o \
wrf_auxinput5out.o \
wrf_auxinput6in.o \
wrf_auxinput6out.o \

wrf_auxinput7in.o \
wrf_auxinput7out.o \
wrf_auxinput8in.o \
wrf_auxinput8out.o \
wrf_auxinput9in.o \
wrf_auxinput9out.o \
wrf_bdyin.o \
wrf_bdyout.o \
wrf_ext_read_field.o \
wrf_ext_write_field.o \
wrf_histin.o \
wrf_histout.o \
wrf_inputin.o \
wrf_inputout.o \
wrf_restartin.o \
wrf_restartout.o \
module_state_description.o \
nl_set_0_routines.o \
nl_set_1_routines.o \
nl_get_0_routines.o \
nl_get_1_routines.o \
module_alloc_space.o \
module_comm_dm.o \
module_configure.o :
        $(RM) $@
        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
        $(SED_FTN) $*.bb | $(CPP) > $*.f90
        $(RM) $*.b $*.bb
        $(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90


Environmental Variables:


USER=dbh409
LOGNAME=dbh409
HOME=/home/dbh409
PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/bin:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/bin:/usr/local/intel/11.0/084/bin/intel64:/usr/local/intel/11.0/084/bin/intel64:/usr/local/maui/bin:/usr/local/maui/sbin:/usr/local/torque/bin:/usr/local/torque/sbin:/usr/local/Modules/3.2.6/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/home/software/netCDF/3.6.3/intel/mvapich/bin:/usr/local/ncarg_ifort/bin:.
MAIL=/var/spool/mail/dbh409
SHELL=/bin/tcsh
SSH_CLIENT=10.237.0.175 49359 22
SSH_CONNECTION=10.237.0.175 49359 129.237.228.235 22
SSH_TTY=/dev/pts/3
TERM=xterm
HOSTTYPE=x86_64-linux
VENDOR=unknown
OSTYPE=linux
MACHTYPE=x86_64
SHLVL=1
PWD=/home/dbh409/WRFV3
GROUP=dbh409
HOST=pequod
REMOTEHOST=10.237.0.175
HOSTNAME=pequod
INPUTRC=/etc/inputrc
LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.ogg=01;35:*.mp3=01;35:*.wav=01;35:
G_BROKEN_FILENAMES=1
SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
KDE_IS_PRELINKED=1
KDEDIR=/usr
LANG=en_US.UTF-8
LESSOPEN=|/usr/bin/lesspipe.sh %s
MANPATH=/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/share/man:/usr/local/intel/11.0/084/man:/usr/local/intel/11.0/084/man:/usr/local/maui/man:/usr/local/torque/man:/usr/local/Modules/3.2.6/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man
QTDIR=/usr/lib64/qt-3.3
QTINC=/usr/lib64/qt-3.3/include
QTLIB=/usr/lib64/qt-3.3/lib
MODULE_VERSION=3.2.6
MODULE_VERSION_STACK=3.2.6
MODULESHOME=/usr/local/Modules/3.2.6
MODULEPATH=/usr/local/Modules/versions:/usr/local/Modules/$MODULE_VERSION/modulefiles:/usr/local/Modules/modulefiles:
LOADEDMODULES=null:modules:tools/torque-maui:compilers/64/intel-x86_64:openmpi/openmpi-1.3.2-ethernet-intel.64:tools/netcdf-4.1.3-intel:mpich2/mpich2-1.0.7-ethernet-intel.64
CC=/usr/local/intel/11.0/084/bin/intel64/icc
CCHOME=/usr/local/intel/11.0/084
CXX=/usr/local/intel/11.0/084/bin/intel64/icpc
F77=/usr/local/intel/11.0/084/bin/intel64/ifort
F90=/usr/local/intel/11.0/084/bin/intel64/ifort
FC=/usr/local/intel/11.0/084/bin/intel64/ifort
FCHOME=/usr/local/intel/11.0/084
INTEL_LICENSE_FILE=/opt/intel/licenses/l_RH4JJF9H.lic
LD_LIBRARY_PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/lib:/usr/local/lib:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/lib:/usr/local/intel/11.0/084/lib/intel64:/usr/local/maui/lib:/usr/local/torque/lib
MPIHOME=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0
NETCDF=/usr/local
_LMFILES_=/usr/local/Modules/modulefiles/null:/usr/local/Modules/modulefiles/modules:/usr/local/Modules/modulefiles/tools/torque-maui:/usr/local/Modules/modulefiles/compilers/64/intel-x86_64:/usr/local/Modules/modulefiles/openmpi/openmpi-1.3.2-ethernet-intel.64:/usr/local/Modules/modulefiles/tools/netcdf-4.1.3-intel:/usr/local/Modules/modulefiles/mpich2/mpich2-1.0.7-ethernet-intel.64
NCARG_ROOT=/usr/local/ncarg_ifort
RIP_ROOT=/home/dbh409/RIP4
ITT_DIR=/usr/local/itt
IDL_DIR=/usr/local/itt/idl71


The NetCDF build location is /usr/local/  a slight accident, but I don't think it makes a difference that it's not /usr/local/netcdf-4.1.3.

From raju_attadamsc at rediffmail.com  Tue Aug  9 03:55:53 2011
From: raju_attadamsc at rediffmail.com (rajuattada)
Date: 9 Aug 2011 09:55:53 -0000
Subject: [Wrf-users] =?utf-8?q?Help_Needed?=
Message-ID: <1312567363.S.71264.32393.f4mail-235-193.rediffmail.com.old.1312883753.20938@webmail.rediffmail.com>







Dear All,

 When i am plotting NCEP data for vorticity, it is not displaying near the my boundaries(boarders).

 I enclosed plotted one. Just find the attachment.

 Please give me suggestions.......

 

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From agnes.mika at bmtargoss.com  Tue Aug  9 09:29:57 2011
From: agnes.mika at bmtargoss.com (Agnes Mika)
Date: Tue, 9 Aug 2011 17:29:57 +0200
Subject: [Wrf-users] Help Needed
In-Reply-To: <1312567363.S.71264.32393.f4mail-235-193.rediffmail.com.old.1312883753.20938@webmail.rediffmail.com>
References: <1312567363.S.71264.32393.f4mail-235-193.rediffmail.com.old.1312883753.20938@webmail.rediffmail.com>
Message-ID: <20110809152956.GF20086@aggedor.argoss.nl>

Hallo,

 It does make sense to me that you don't see anything near the
 boundaries. Vorticity is defined as: dv/dx - du/dy (but then partial
 derivatives), thus you need data from surrounding grid points to be
 able to compute it for a given grid point. On/close to the boundary
 you don't have enough data, so your program probably does not compute
 it.

Greetings,
Agnes

rajuattada wrote:
> Dear All,
> 
>  When i am plotting NCEP data for vorticity, it is not displaying near the my boundaries(boarders).
> 
>  I enclosed plotted one. Just find the attachment.
> 
>  Please give me suggestions.......
> 
>  
> 


> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users

--
Dr. ?gnes Mika
Advisor, Meteorology and Air Quality

Tel:    +31 (0)527-242299
Fax:    +31 (0)527-242016
Web:    www.bmtargoss.com

BMT ARGOSS
P.O. Box 61, 8325 ZH Vollenhove
Voorsterweg 28, 8316 PT Marknesse
The Netherlands

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From andrew.porter at stfc.ac.uk  Tue Aug  9 09:42:09 2011
From: andrew.porter at stfc.ac.uk (Andy Porter)
Date: Tue, 09 Aug 2011 16:42:09 +0100
Subject: [Wrf-users] WRF Compilation Error
In-Reply-To: <A644457BC398E2478714678865618326080BD4@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E2478714678865618326080BD4@EXCH10-MBX-02.home.ku.edu>
Message-ID: <4E415551.1000304@stfc.ac.uk>

Hello,
>
> I'm having an issue compiling WRF V3.1.1 with the Intel compilers using a multi-processor (dmpar) build.  NCAR Graphics (6.0.0) and NetCDF (4.1.3) are also built with the Intel compilers. The configure.wrf file contents (minus comments) and a list of the environmental variables are shown at the end of this message.  The following is the first of several warning/undefined reference messages:
>
>
> ifort -w -ftz -align all -fno-alias -fp-model precise  -FR -convert big_endian -c  -I/usr/local/include -I../ioapi_share diffwrf.f
> diffwrf.f(1629): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1630): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1709): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1710): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1711): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1712): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf io_netcdf is being built now.
> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
> wrf_io.o: In function `ext_ncd_get_var_info_':
> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'
>
>
> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about.  I have successfully built WRF and WPS on this system before, but this is the first time I have tried it with everything compiled with icc and ifort.  Any suggestions would be much appreciated.
>
That looks like either netcdf has not been built with Fortran support or 
there's an issue with how the compiler has named its objects. I've not 
had trouble with the Intel compiler and the latter issue so I suspect 
the former - I think the configure flag you want for netcdf is --enable-f90.

HTH,

Andy.

-- 
Dr. Andrew Porter
Computational Scientist
Advanced Research Computing Group
Computational Science and Engineering Dept.
STFC Daresbury Laboratory
Keckwick Lane
Daresbury
WA4 4AD
Tel. : +44 (0)1925 603607


From dbh409 at ku.edu  Tue Aug  9 11:07:30 2011
From: dbh409 at ku.edu (Huber, David)
Date: Tue, 9 Aug 2011 17:07:30 +0000
Subject: [Wrf-users] WRF Compilation Error
In-Reply-To: <CAGR4S9HYG=eMBWtN10_L9uZ6bqtm0F+ZAe7s4zHnsB+Jd8in7Q@mail.gmail.com>
References: <A644457BC398E2478714678865618326080BD4@EXCH10-MBX-02.home.ku.edu>,
	<CAGR4S9HYG=eMBWtN10_L9uZ6bqtm0F+ZAe7s4zHnsB+Jd8in7Q@mail.gmail.com>
Message-ID: <A644457BC398E2478714678865618326080C6D@EXCH10-MBX-02.home.ku.edu>

Hi Dmitry,

Thanks for the reply.  It took a little digging, but I found the makefile with this command in WRFV3/external/ionetcdf/makefile.  Here's the block for diffwrf.F90:

diffwrf:                diffwrf.F90
        x=`echo "$(FC)" | awk '{print $$1}'` ; export x ; \
        if [ $$x = "gfortran" ] ; then \
           echo removing external declaration of iargc for gfortran ; \
           $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\
        else \
           $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \
        fi
        $(FC) -c $(FFLAGS) diffwrf.f
        if [ \( -f ../../frame/wrf_debug.o \) -a \( -f ../../frame/module_wrf_error.o \) -a \( -f $(ESMF_MOD_DEPENDENCE) \) ] ; then \
          echo "diffwrf io_netcdf is being built now. " ; \
          if [ -f $(NETCDFPATH)/lib/libnetcdff.a ] ; then \
            $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) bitwise_operators.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) -lnetcdff ;\
          else \
            $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) bitwise_operators.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) ;\
          fi ; \
        else \
           echo "***************************************************************************** " ; \
           echo "*** Rerun compile to make diffwrf in external/io_netcdf directory         *** " ; \
           echo "***************************************************************************** " ; \
        fi


There was an @ before the line 
if[\( -f ../../frame/wrf_debug.o \) ...
which I deleted, but the output did not change.
I see the link for netcdff and the $LIBS, which is comprised of
LIBS    = -L$(NETCDFPATH)/lib -lnetcdf

-Dave


________________________________________
From: Dmitry N. Mikushin [maemarcus at gmail.com]
Sent: Tuesday, August 09, 2011 10:44 AM
To: Huber, David
Cc: wrf-users at ucar.edu
Subject: Re: [Wrf-users] WRF Compilation Error

Hi,

> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about.

- This is usually harmless and is always around with Intel compiler.

> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
> wrf_io.o: In function `ext_ncd_get_var_info_':
> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'

These are unresolved externals, which should normally occur, if proper
library is not added to the link command.

Could you print out the exact linking command it is using?

> diffwrf io_netcdf is being built now.

- I suppose, linking command should go in the Makefile right after
echoing "diffwrf io_netcdf is being built now". If it starts with "@",
then it's hidden. Remove "@", and you will see the command. Once,
exact command is known, it should be much easier to understand what's
wrong.

- D.


2011/8/9 Huber, David <dbh409 at ku.edu>:
> Hello,
>
> I'm having an issue compiling WRF V3.1.1 with the Intel compilers using a multi-processor (dmpar) build.  NCAR Graphics (6.0.0) and NetCDF (4.1.3) are also built with the Intel compilers. The configure.wrf file contents (minus comments) and a list of the environmental variables are shown at the end of this message.  The following is the first of several warning/undefined reference messages:
>
>
> ifort -w -ftz -align all -fno-alias -fp-model precise  -FR -convert big_endian -c  -I/usr/local/include -I../ioapi_share diffwrf.f
> diffwrf.f(1629): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1630): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1709): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1710): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1711): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1712): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf io_netcdf is being built now.
> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
> wrf_io.o: In function `ext_ncd_get_var_info_':
> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'
>
>
> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about.  I have successfully built WRF and WPS on this system before, but this is the first time I have tried it with everything compiled with icc and ifort.  Any suggestions would be much appreciated.
>
> Thanks,
>
> Dave
>
>
> configure.wrf:
>
>
> SHELL           =       /bin/sh
> DEVTOP          =       `pwd`
> LIBINCLUDE      =       .
> .SUFFIXES: .F .i .o .f90 .c
>
> COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
>           -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
>           -DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
>           -DDA_CORE=$(WRF_DA_CORE) \
>
>           -DEXP_CORE=$(WRF_EXP_CORE)
>
>
> MAX_DOMAINS     =       21
>
> CONFIG_BUF_LEN  =       32768
>
>
> NATIVE_RWORDSIZE = 4
>
> SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe
>
> IO_GRIB_SHARE_DIR =
>
> ESMF_COUPLING       = 0
> ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
>
> ESMF_IO_INC         = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
> ESMF_MOD_INC        =  $(ESMF_IO_INC)
> ESMF_IO_DEFS        =
> ESMF_TARGET         = esmf_time
>
>
> LIBWRFLIB = libwrflib.a
>
>
> DMPARALLEL      =        1
> OMPCPP          =       # -D_OPENMP
> OMP             =       # -openmp -fpp -auto
> SFC             =       ifort
> SCC             =       icc
> DM_FC           =       mpif90 -f90=$(SFC)
> DM_CC           =       mpicc -cc=$(SCC) -DMPI2_SUPPORT
> FC              =        $(DM_FC)
> CC              =       $(DM_CC) -DFSEEKO64_OK
> LD              =       $(FC)
> RWORDSIZE       =       $(NATIVE_RWORDSIZE)
> PROMOTION       =       -i4
> ARCH_LOCAL      =       -DNONSTANDARD_SYSTEM_FUNC
> CFLAGS_LOCAL    =       -w -O3 -ip
> LDFLAGS_LOCAL   =       -ip
> CPLUSPLUSLIB    =
> ESMF_LDFLAG     =       $(CPLUSPLUSLIB)
> FCOPTIM         =       -O3
> FCREDUCEDOPT    =       $(FCOPTIM)
> FCNOOPT         =       -O0 -fno-inline -fno-ip
> FCDEBUG         =       # -g $(FCNOOPT) -traceback
> FORMAT_FIXED    =       -FI
> FORMAT_FREE     =       -FR
> FCSUFFIX        =
> BYTESWAPIO      =       -convert big_endian
> FCBASEOPTS      =       -w -ftz -align all -fno-alias -fp-model precise $(FCDEBUG) $(FORMAT_FREE) $(BYTESWAPIO)
> MODULE_SRCH_FLAG =
> TRADFLAG        =      -traditional
> CPP             =      /lib/cpp -C -P
> AR              =      ar
> ARFLAGS         =      ru
> M4              =      m4
> RANLIB          =      ranlib
> CC_TOOLS        =      $(SCC)
>
> FGREP = fgrep -iq
>
> ARCHFLAGS       =    $(COREDEFS) -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=4 \
>                     $(ARCH_LOCAL) \
>                     $(DA_ARCHFLAGS) \
>                      -DDM_PARALLEL \
>
>                       \
>                      -DNETCDF \
>                       \
>                       \
>                       \
>                       \
>                       \
>                       \
>                      -DGRIB1 \
>                      -DINTIO \
>                      -DLIMIT_ARGS \
>                      -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
>                      -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
>                      -DNMM_NEST=$(WRF_NMM_NEST)
> CFLAGS          =    $(CFLAGS_LOCAL) -DDM_PARALLEL
> FCFLAGS         =    $(FCOPTIM) $(FCBASEOPTS)
> ESMF_LIB_FLAGS  =
> ESMF_IO_LIB     =    $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
> ESMF_IO_LIB_EXT =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
> INCLUDE_MODULES =    $(MODULE_SRCH_FLAG) \
>                     $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
>                      -I$(WRF_SRC_ROOT_DIR)/main \
>                      -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
>                      -I$(WRF_SRC_ROOT_DIR)/external/io_int \
>                      -I$(WRF_SRC_ROOT_DIR)/frame \
>                      -I$(WRF_SRC_ROOT_DIR)/share \
>                      -I$(WRF_SRC_ROOT_DIR)/phys \
>                      -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
>                       \
>
> REGISTRY        =    Registry
>
> LIB_BUNDLED     = \
>                     -L$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 -lfftpack \
>                     -L$(WRF_SRC_ROOT_DIR)/external/io_grib1 -lio_grib1 \
>                     -L$(WRF_SRC_ROOT_DIR)/external/io_grib_share -lio_grib_share \
>                     -L$(WRF_SRC_ROOT_DIR)/external/io_int -lwrfio_int \
>                     $(ESMF_IO_LIB) \
>                     $(ESMF_IO_LIB) \
>                     $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
>                     $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
>                     $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
>
> LIB_EXTERNAL    = \
>
>                     $(WRF_SRC_ROOT_DIR)/external/io_netcdf/libwrfio_nf.a -L/usr/local/lib -lnetcdff -lnetcdf
>
> LIB             =    $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
> LDFLAGS         =    $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
> ENVCOMPDEFS     =
> WRF_CHEM        =       0
> CPPFLAGS        =    $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
> NETCDFPATH      =    /usr/local
> PNETCDFPATH     =
>
> bundled:  wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack
> external:  wrfio_nf   $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
>
> ######################
> externals: bundled external
>
> gen_comms_serial :
>        ( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )
>
> module_dm_serial :
>        ( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )
>
> gen_comms_rsllite :
>        ( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
>          /bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
>          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )
>
> module_dm_rsllite :
>        ( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
>          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
>
> wrfio_nf :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
>          make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>          CC="$(SCC)" CFLAGS="$(CFLAGS)" \
>          FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> wrfio_pnf :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
>          make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>          FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
>
>
> wrfio_grib_share :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
>          make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>
> wrfio_grib1 :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
>          make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>
> wrfio_grib2 :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
>          make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
>          CPP="$(CPP)" \
>          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
>          FIXED="$(FORMAT_FIXED)" archive)
>
> wrfio_int :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
>          make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>          FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" \
>          TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" all )
>
> esmf_time :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
>          make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
>          CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> fftpack :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
>          make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
>          FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
>          CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
>          $(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )
>
>
> LN      =       ln -sf
> MAKE    =       make -i -r
> RM      =       rm -f
>
>
> # These sub-directory builds are identical across all architectures
>
> wrf_ioapi_includes :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
>          $(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> wrfio_esmf :
>        ( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
>          make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
>          RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> #       There is probably no reason to modify these rules
>
> .F.i:
>        $(RM) $@
>        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
>        mv $*.i $(DEVTOP)/pick/$*.f90
>        cp $*.F $(DEVTOP)/pick
>
> .F.o:
>        $(RM) $@
>        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
>        $(SED_FTN) $*.bb | $(CPP) > $*.f90
>        $(RM) $*.b $*.bb
>        if $(FGREP) '!$$OMP' $*.f90 ; then \
>          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>          $(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
>        else \
>          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>          $(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
>        fi
>
>
> .F.f90:
>        $(RM) $@
>        $(SED_FTN) $*.F > $*.b
>        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $@
>        $(RM) $*.b
>
>
> .f90.o:
>        $(RM) $@
>        $(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90
>
> .c.o:
>        $(RM) $@
>        $(CC) -o $@ -c $(CFLAGS) $*.c
>
> # A little more adventurous.  Allow full opt on
> # mediation_integrate.o \
> # shift_domain_em.o \
> # solve_em.o  <-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
> # mediation_feedback_domain.o : mediation_feedback_domain.F
> # mediation_force_domain.o : mediation_force_domain.F
> # mediation_interp_domain.o : mediation_interp_domain.F
>
> # compile these without high optimization to speed compile
> convert_nmm.o : convert_nmm.F
> init_modules_em.o : init_modules_em.F
> input_wrf.o : input_wrf.F
> module_io.o : module_io.F
> module_comm_dm.o : module_comm_dm.F
> module_configure.o : module_configure.F
> module_dm.o : module_dm.F
> module_domain.o : module_domain.F
> module_domain_type.o : module_domain_type.F
> module_alloc_space.o : module_alloc_space.F
> module_tiles.o : module_tiles.F
> module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
> module_initialize.o : module_initialize.F
> module_physics_init.o : module_physics_init.F
> module_initialize_b_wave.o : module_initialize_b_wave.F
> module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
> module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
> module_initialize_real.o : module_initialize_real.F
> module_initialize_real.o: module_initialize_real.F
> module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
> module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
> module_integrate.o : module_integrate.F
> module_io_mm5.o : module_io_mm5.F
> module_io_wrf.o : module_io_wrf.F
> module_si_io.o : module_si_io.F
> module_state_description.o : module_state_description.F
> output_wrf.o : output_wrf.F
>
>
> NMM_NEST_UTILS1.o : NMM_NEST_UTILS1.F
> solve_interface.o : solve_interface.F
> start_domain.o : start_domain.F
> start_domain_nmm.o : start_domain_nmm.F
> start_em.o : start_em.F
> wrf_auxhist10in.o : wrf_auxhist10in.F
> wrf_auxhist10out.o : wrf_auxhist10out.F
> wrf_auxhist11in.o : wrf_auxhist11in.F
> wrf_auxhist11out.o : wrf_auxhist11out.F
> wrf_auxhist1in.o : wrf_auxhist1in.F
> wrf_auxhist1out.o : wrf_auxhist1out.F
> wrf_auxhist2in.o : wrf_auxhist2in.F
> wrf_auxhist2out.o : wrf_auxhist2out.F
> wrf_auxhist3in.o : wrf_auxhist3in.F
> wrf_auxhist3out.o : wrf_auxhist3out.F
> wrf_auxhist4in.o : wrf_auxhist4in.F
> wrf_auxhist4out.o : wrf_auxhist4out.F
> wrf_auxhist5in.o : wrf_auxhist5in.F
> wrf_auxhist5out.o : wrf_auxhist5out.F
> wrf_auxhist6in.o : wrf_auxhist6in.F
> wrf_auxhist6out.o : wrf_auxhist6out.F
> wrf_auxhist7in.o : wrf_auxhist7in.F
> wrf_auxhist7out.o : wrf_auxhist7out.F
> wrf_auxhist8in.o : wrf_auxhist8in.F
> wrf_auxhist8out.o : wrf_auxhist8out.F
> wrf_auxhist9in.o : wrf_auxhist9in.F
> wrf_auxhist9out.o : wrf_auxhist9out.F
> wrf_auxinput10in.o : wrf_auxinput10in.F
> wrf_auxinput10out.o : wrf_auxinput10out.F
> wrf_auxinput11in.o : wrf_auxinput11in.F
> wrf_auxinput11out.o : wrf_auxinput11out.F
> wrf_auxinput1in.o : wrf_auxinput1in.F
> wrf_auxinput1out.o : wrf_auxinput1out.F
> wrf_auxinput2in.o : wrf_auxinput2in.F
> wrf_auxinput2out.o : wrf_auxinput2out.F
> wrf_auxinput3in.o : wrf_auxinput3in.F
> wrf_auxinput3out.o : wrf_auxinput3out.F
> wrf_auxinput4in.o : wrf_auxinput4in.F
> wrf_auxinput4out.o : wrf_auxinput4out.F
> wrf_auxinput5in.o : wrf_auxinput5in.F
> wrf_auxinput5out.o : wrf_auxinput5out.F
> wrf_auxinput6in.o : wrf_auxinput6in.F
> wrf_auxinput6out.o : wrf_auxinput6out.F
> wrf_auxinput7in.o : wrf_auxinput7in.F
>
> wrf_auxinput7out.o : wrf_auxinput7out.F
> wrf_auxinput8in.o : wrf_auxinput8in.F
> wrf_auxinput8out.o : wrf_auxinput8out.F
> wrf_auxinput9in.o : wrf_auxinput9in.F
> wrf_auxinput9out.o : wrf_auxinput9out.F
> wrf_bdyin.o : wrf_bdyin.F
> wrf_bdyout.o : wrf_bdyout.F
> wrf_ext_read_field.o : wrf_ext_read_field.F
> wrf_ext_write_field.o : wrf_ext_write_field.F
> wrf_fddaobs_in.o : wrf_fddaobs_in.F
> wrf_histin.o : wrf_histin.F
> wrf_histout.o : wrf_histout.F
> wrf_inputin.o : wrf_inputin.F
> wrf_inputout.o : wrf_inputout.F
> wrf_restartin.o : wrf_restartin.F
> wrf_restartout.o : wrf_restartout.F
> wrf_tsin.o : wrf_tsin.F
> nl_get_0_routines.o : nl_get_0_routines.F
> nl_get_1_routines.o : nl_get_1_routines.F
> nl_set_0_routines.o : nl_set_0_routines.F
> nl_set_1_routines.o : nl_set_1_routines.F
>
> convert_nmm.o \
> init_modules_em.o \
> module_dm.o \
> module_fddaobs_rtfdda.o \
> module_initialize.o \
> module_initialize_b_wave.o \
> module_initialize_hill2d_x.o \
> module_initialize_quarter_ss.o \
> module_initialize_real.o \
> module_initialize_squall2d_x.o \
> module_initialize_squall2d_y.o \
> module_integrate.o \
> module_io_mm5.o \
> module_io_wrf.o \
> module_si_io.o \
> module_tiles.o \
> output_wrf.o \
> NMM_NEST_UTILS1.o \
> solve_interface.o \
> start_domain.o \
> start_domain_nmm.o \
> shift_domain_nmm.o \
>
> start_em.o \
> wrf_fddaobs_in.o \
> wrf_tsin.o :
>        $(RM) $@
>        $(SED_FTN) $*.F > $*.b
>        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
>        $(RM) $*.b
>        if $(FGREP) '!$$OMP' $*.f90 ; then \
>          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>          $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
>        else \
>          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>          $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
>        fi
>
> module_sf_ruclsm.o : module_sf_ruclsm.F
>
> module_sf_ruclsm.o :
>        $(RM) $@
>        $(SED_FTN) $*.F > $*.b
>        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
>        $(RM) $*.b
>        if $(FGREP) '!$$OMP' $*.f90 ; then \
>          echo COMPILING $*.F WITH OMP ; \
>          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>          $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
>        else \
>          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>          $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
>        fi
>
> input_wrf.o \
> module_domain.o \
> module_domain_type.o \
> module_physics_init.o \
> module_io.o \
>
> wrf_auxhist10in.o \
> wrf_auxhist10out.o \
> wrf_auxhist11in.o \
> wrf_auxhist11out.o \
> wrf_auxhist1in.o \
> wrf_auxhist1out.o \
> wrf_auxhist2in.o \
> wrf_auxhist2out.o \
> wrf_auxhist3in.o \
> wrf_auxhist3out.o \
> wrf_auxhist4in.o \
> wrf_auxhist4out.o \
> wrf_auxhist5in.o \
> wrf_auxhist5out.o \
> wrf_auxhist6in.o \
> wrf_auxhist6out.o \
> wrf_auxhist7in.o \
> wrf_auxhist7out.o \
> wrf_auxhist8in.o \
> wrf_auxhist8out.o \
> wrf_auxhist9in.o \
> wrf_auxhist9out.o \
> wrf_auxinput10in.o \
> wrf_auxinput10out.o \
> wrf_auxinput11in.o \
> wrf_auxinput11out.o \
> wrf_auxinput1in.o \
> wrf_auxinput1out.o \
> wrf_auxinput2in.o \
> wrf_auxinput2out.o \
> wrf_auxinput3in.o \
> wrf_auxinput3out.o \
> wrf_auxinput4in.o \
> wrf_auxinput4out.o \
> wrf_auxinput5in.o \
> wrf_auxinput5out.o \
> wrf_auxinput6in.o \
> wrf_auxinput6out.o \
>
> wrf_auxinput7in.o \
> wrf_auxinput7out.o \
> wrf_auxinput8in.o \
> wrf_auxinput8out.o \
> wrf_auxinput9in.o \
> wrf_auxinput9out.o \
> wrf_bdyin.o \
> wrf_bdyout.o \
> wrf_ext_read_field.o \
> wrf_ext_write_field.o \
> wrf_histin.o \
> wrf_histout.o \
> wrf_inputin.o \
> wrf_inputout.o \
> wrf_restartin.o \
> wrf_restartout.o \
> module_state_description.o \
> nl_set_0_routines.o \
> nl_set_1_routines.o \
> nl_get_0_routines.o \
> nl_get_1_routines.o \
> module_alloc_space.o \
> module_comm_dm.o \
> module_configure.o :
>        $(RM) $@
>        $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
>        $(SED_FTN) $*.bb | $(CPP) > $*.f90
>        $(RM) $*.b $*.bb
>        $(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90
>
>
> Environmental Variables:
>
>
> USER=dbh409
> LOGNAME=dbh409
> HOME=/home/dbh409
> PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/bin:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/bin:/usr/local/intel/11.0/084/bin/intel64:/usr/local/intel/11.0/084/bin/intel64:/usr/local/maui/bin:/usr/local/maui/sbin:/usr/local/torque/bin:/usr/local/torque/sbin:/usr/local/Modules/3.2.6/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/home/software/netCDF/3.6.3/intel/mvapich/bin:/usr/local/ncarg_ifort/bin:.
> MAIL=/var/spool/mail/dbh409
> SHELL=/bin/tcsh
> SSH_CLIENT=10.237.0.175 49359 22
> SSH_CONNECTION=10.237.0.175 49359 129.237.228.235 22
> SSH_TTY=/dev/pts/3
> TERM=xterm
> HOSTTYPE=x86_64-linux
> VENDOR=unknown
> OSTYPE=linux
> MACHTYPE=x86_64
> SHLVL=1
> PWD=/home/dbh409/WRFV3
> GROUP=dbh409
> HOST=pequod
> REMOTEHOST=10.237.0.175
> HOSTNAME=pequod
> INPUTRC=/etc/inputrc
> LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.ogg=01;35:*.mp3=01;35:*.wav=01;35:
> G_BROKEN_FILENAMES=1
> SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
> KDE_IS_PRELINKED=1
> KDEDIR=/usr
> LANG=en_US.UTF-8
> LESSOPEN=|/usr/bin/lesspipe.sh %s
> MANPATH=/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/share/man:/usr/local/intel/11.0/084/man:/usr/local/intel/11.0/084/man:/usr/local/maui/man:/usr/local/torque/man:/usr/local/Modules/3.2.6/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man
> QTDIR=/usr/lib64/qt-3.3
> QTINC=/usr/lib64/qt-3.3/include
> QTLIB=/usr/lib64/qt-3.3/lib
> MODULE_VERSION=3.2.6
> MODULE_VERSION_STACK=3.2.6
> MODULESHOME=/usr/local/Modules/3.2.6
> MODULEPATH=/usr/local/Modules/versions:/usr/local/Modules/$MODULE_VERSION/modulefiles:/usr/local/Modules/modulefiles:
> LOADEDMODULES=null:modules:tools/torque-maui:compilers/64/intel-x86_64:openmpi/openmpi-1.3.2-ethernet-intel.64:tools/netcdf-4.1.3-intel:mpich2/mpich2-1.0.7-ethernet-intel.64
> CC=/usr/local/intel/11.0/084/bin/intel64/icc
> CCHOME=/usr/local/intel/11.0/084
> CXX=/usr/local/intel/11.0/084/bin/intel64/icpc
> F77=/usr/local/intel/11.0/084/bin/intel64/ifort
> F90=/usr/local/intel/11.0/084/bin/intel64/ifort
> FC=/usr/local/intel/11.0/084/bin/intel64/ifort
> FCHOME=/usr/local/intel/11.0/084
> INTEL_LICENSE_FILE=/opt/intel/licenses/l_RH4JJF9H.lic
> LD_LIBRARY_PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/lib:/usr/local/lib:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/lib:/usr/local/intel/11.0/084/lib/intel64:/usr/local/maui/lib:/usr/local/torque/lib
> MPIHOME=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0
> NETCDF=/usr/local
> _LMFILES_=/usr/local/Modules/modulefiles/null:/usr/local/Modules/modulefiles/modules:/usr/local/Modules/modulefiles/tools/torque-maui:/usr/local/Modules/modulefiles/compilers/64/intel-x86_64:/usr/local/Modules/modulefiles/openmpi/openmpi-1.3.2-ethernet-intel.64:/usr/local/Modules/modulefiles/tools/netcdf-4.1.3-intel:/usr/local/Modules/modulefiles/mpich2/mpich2-1.0.7-ethernet-intel.64
> NCARG_ROOT=/usr/local/ncarg_ifort
> RIP_ROOT=/home/dbh409/RIP4
> ITT_DIR=/usr/local/itt
> IDL_DIR=/usr/local/itt/idl71
>
>
> The NetCDF build location is /usr/local/  a slight accident, but I don't think it makes a difference that it's not /usr/local/netcdf-4.1.3.
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>


From maemarcus at gmail.com  Tue Aug  9 09:44:48 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Tue, 9 Aug 2011 19:44:48 +0400
Subject: [Wrf-users] WRF Compilation Error
In-Reply-To: <A644457BC398E2478714678865618326080BD4@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E2478714678865618326080BD4@EXCH10-MBX-02.home.ku.edu>
Message-ID: <CAGR4S9HYG=eMBWtN10_L9uZ6bqtm0F+ZAe7s4zHnsB+Jd8in7Q@mail.gmail.com>

Hi,

> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about.

- This is usually harmless and is always around with Intel compiler.

> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
> wrf_io.o: In function `ext_ncd_get_var_info_':
> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'

These are unresolved externals, which should normally occur, if proper
library is not added to the link command.

Could you print out the exact linking command it is using?

> diffwrf io_netcdf is being built now.

- I suppose, linking command should go in the Makefile right after
echoing "diffwrf io_netcdf is being built now". If it starts with "@",
then it's hidden. Remove "@", and you will see the command. Once,
exact command is known, it should be much easier to understand what's
wrong.

- D.


2011/8/9 Huber, David <dbh409 at ku.edu>:
> Hello,
>
> I'm having an issue compiling WRF V3.1.1 with the Intel compilers using a multi-processor (dmpar) build. ?NCAR Graphics (6.0.0) and NetCDF (4.1.3) are also built with the Intel compilers. The configure.wrf file contents (minus comments) and a list of the environmental variables are shown at the end of this message. ?The following is the first of several warning/undefined reference messages:
>
>
> ifort -w -ftz -align all -fno-alias -fp-model precise ?-FR -convert big_endian -c ?-I/usr/local/include -I../ioapi_share diffwrf.f
> diffwrf.f(1629): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1630): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1709): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1710): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1711): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf.f(1712): (col. 7) remark: LOOP WAS VECTORIZED.
> diffwrf io_netcdf is being built now.
> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
> wrf_io.o: In function `ext_ncd_get_var_info_':
> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'
>
>
> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about. ?I have successfully built WRF and WPS on this system before, but this is the first time I have tried it with everything compiled with icc and ifort. ?Any suggestions would be much appreciated.
>
> Thanks,
>
> Dave
>
>
> configure.wrf:
>
>
> SHELL ? ? ? ? ? = ? ? ? /bin/sh
> DEVTOP ? ? ? ? ?= ? ? ? `pwd`
> LIBINCLUDE ? ? ?= ? ? ? .
> .SUFFIXES: .F .i .o .f90 .c
>
> COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
> ? ? ? ? ? -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
> ? ? ? ? ? -DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
> ? ? ? ? ? -DDA_CORE=$(WRF_DA_CORE) \
>
> ? ? ? ? ? -DEXP_CORE=$(WRF_EXP_CORE)
>
>
> MAX_DOMAINS ? ? = ? ? ? 21
>
> CONFIG_BUF_LEN ?= ? ? ? 32768
>
>
> NATIVE_RWORDSIZE = 4
>
> SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe
>
> IO_GRIB_SHARE_DIR =
>
> ESMF_COUPLING ? ? ? = 0
> ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
>
> ESMF_IO_INC ? ? ? ? = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
> ESMF_MOD_INC ? ? ? ?= ?$(ESMF_IO_INC)
> ESMF_IO_DEFS ? ? ? ?=
> ESMF_TARGET ? ? ? ? = esmf_time
>
>
> LIBWRFLIB = libwrflib.a
>
>
> DMPARALLEL ? ? ?= ? ? ? ?1
> OMPCPP ? ? ? ? ?= ? ? ? # -D_OPENMP
> OMP ? ? ? ? ? ? = ? ? ? # -openmp -fpp -auto
> SFC ? ? ? ? ? ? = ? ? ? ifort
> SCC ? ? ? ? ? ? = ? ? ? icc
> DM_FC ? ? ? ? ? = ? ? ? mpif90 -f90=$(SFC)
> DM_CC ? ? ? ? ? = ? ? ? mpicc -cc=$(SCC) -DMPI2_SUPPORT
> FC ? ? ? ? ? ? ?= ? ? ? ?$(DM_FC)
> CC ? ? ? ? ? ? ?= ? ? ? $(DM_CC) -DFSEEKO64_OK
> LD ? ? ? ? ? ? ?= ? ? ? $(FC)
> RWORDSIZE ? ? ? = ? ? ? $(NATIVE_RWORDSIZE)
> PROMOTION ? ? ? = ? ? ? -i4
> ARCH_LOCAL ? ? ?= ? ? ? -DNONSTANDARD_SYSTEM_FUNC
> CFLAGS_LOCAL ? ?= ? ? ? -w -O3 -ip
> LDFLAGS_LOCAL ? = ? ? ? -ip
> CPLUSPLUSLIB ? ?=
> ESMF_LDFLAG ? ? = ? ? ? $(CPLUSPLUSLIB)
> FCOPTIM ? ? ? ? = ? ? ? -O3
> FCREDUCEDOPT ? ?= ? ? ? $(FCOPTIM)
> FCNOOPT ? ? ? ? = ? ? ? -O0 -fno-inline -fno-ip
> FCDEBUG ? ? ? ? = ? ? ? # -g $(FCNOOPT) -traceback
> FORMAT_FIXED ? ?= ? ? ? -FI
> FORMAT_FREE ? ? = ? ? ? -FR
> FCSUFFIX ? ? ? ?=
> BYTESWAPIO ? ? ?= ? ? ? -convert big_endian
> FCBASEOPTS ? ? ?= ? ? ? -w -ftz -align all -fno-alias -fp-model precise $(FCDEBUG) $(FORMAT_FREE) $(BYTESWAPIO)
> MODULE_SRCH_FLAG =
> TRADFLAG ? ? ? ?= ? ? ?-traditional
> CPP ? ? ? ? ? ? = ? ? ?/lib/cpp -C -P
> AR ? ? ? ? ? ? ?= ? ? ?ar
> ARFLAGS ? ? ? ? = ? ? ?ru
> M4 ? ? ? ? ? ? ?= ? ? ?m4
> RANLIB ? ? ? ? ?= ? ? ?ranlib
> CC_TOOLS ? ? ? ?= ? ? ?$(SCC)
>
> FGREP = fgrep -iq
>
> ARCHFLAGS ? ? ? = ? ?$(COREDEFS) -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=4 \
> ? ? ? ? ? ? ? ? ? ? $(ARCH_LOCAL) \
> ? ? ? ? ? ? ? ? ? ? $(DA_ARCHFLAGS) \
> ? ? ? ? ? ? ? ? ? ? ?-DDM_PARALLEL \
>
> ? ? ? ? ? ? ? ? ? ? ? \
> ? ? ? ? ? ? ? ? ? ? ?-DNETCDF \
> ? ? ? ? ? ? ? ? ? ? ? \
> ? ? ? ? ? ? ? ? ? ? ? \
> ? ? ? ? ? ? ? ? ? ? ? \
> ? ? ? ? ? ? ? ? ? ? ? \
> ? ? ? ? ? ? ? ? ? ? ? \
> ? ? ? ? ? ? ? ? ? ? ? \
> ? ? ? ? ? ? ? ? ? ? ?-DGRIB1 \
> ? ? ? ? ? ? ? ? ? ? ?-DINTIO \
> ? ? ? ? ? ? ? ? ? ? ?-DLIMIT_ARGS \
> ? ? ? ? ? ? ? ? ? ? ?-DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
> ? ? ? ? ? ? ? ? ? ? ?-DMAX_DOMAINS_F=$(MAX_DOMAINS) \
> ? ? ? ? ? ? ? ? ? ? ?-DNMM_NEST=$(WRF_NMM_NEST)
> CFLAGS ? ? ? ? ?= ? ?$(CFLAGS_LOCAL) -DDM_PARALLEL
> FCFLAGS ? ? ? ? = ? ?$(FCOPTIM) $(FCBASEOPTS)
> ESMF_LIB_FLAGS ?=
> ESMF_IO_LIB ? ? = ? ?$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
> ESMF_IO_LIB_EXT = ? ?-L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
> INCLUDE_MODULES = ? ?$(MODULE_SRCH_FLAG) \
> ? ? ? ? ? ? ? ? ? ? $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/main \
> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/external/io_int \
> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/frame \
> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/share \
> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/phys \
> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
> ? ? ? ? ? ? ? ? ? ? ? \
>
> REGISTRY ? ? ? ?= ? ?Registry
>
> LIB_BUNDLED ? ? = \
> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 -lfftpack \
> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/io_grib1 -lio_grib1 \
> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/io_grib_share -lio_grib_share \
> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/io_int -lwrfio_int \
> ? ? ? ? ? ? ? ? ? ? $(ESMF_IO_LIB) \
> ? ? ? ? ? ? ? ? ? ? $(ESMF_IO_LIB) \
> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
>
> LIB_EXTERNAL ? ?= \
>
> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/external/io_netcdf/libwrfio_nf.a -L/usr/local/lib -lnetcdff -lnetcdf
>
> LIB ? ? ? ? ? ? = ? ?$(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
> LDFLAGS ? ? ? ? = ? ?$(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
> ENVCOMPDEFS ? ? =
> WRF_CHEM ? ? ? ?= ? ? ? 0
> CPPFLAGS ? ? ? ?= ? ?$(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
> NETCDFPATH ? ? ?= ? ?/usr/local
> PNETCDFPATH ? ? =
>
> bundled: ?wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack
> external: ?wrfio_nf ? $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
>
> ######################
> externals: bundled external
>
> gen_comms_serial :
> ? ? ? ?( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )
>
> module_dm_serial :
> ? ? ? ?( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )
>
> gen_comms_rsllite :
> ? ? ? ?( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
> ? ? ? ? ?/bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
> ? ? ? ? ?cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )
>
> module_dm_rsllite :
> ? ? ? ?( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
> ? ? ? ? ?cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
>
> wrfio_nf :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
> ? ? ? ? ?make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
> ? ? ? ? ?CC="$(SCC)" CFLAGS="$(CFLAGS)" \
> ? ? ? ? ?FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> wrfio_pnf :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
> ? ? ? ? ?make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
> ? ? ? ? ?FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
>
>
> wrfio_grib_share :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
> ? ? ? ? ?make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
> ? ? ? ? ?FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>
> wrfio_grib1 :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
> ? ? ? ? ?make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
> ? ? ? ? ?FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>
> wrfio_grib2 :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
> ? ? ? ? ?make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
> ? ? ? ? ?CPP="$(CPP)" \
> ? ? ? ? ?FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
> ? ? ? ? ?FIXED="$(FORMAT_FIXED)" archive)
>
> wrfio_int :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
> ? ? ? ? ?make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
> ? ? ? ? ?FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" \
> ? ? ? ? ?TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" all )
>
> esmf_time :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
> ? ? ? ? ?make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
> ? ? ? ? ?CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> fftpack :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
> ? ? ? ? ?make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
> ? ? ? ? ?FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
> ? ? ? ? ?CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
> ? ? ? ? ?$(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )
>
>
> LN ? ? ?= ? ? ? ln -sf
> MAKE ? ?= ? ? ? make -i -r
> RM ? ? ?= ? ? ? rm -f
>
>
> # These sub-directory builds are identical across all architectures
>
> wrf_ioapi_includes :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
> ? ? ? ? ?$(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> wrfio_esmf :
> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
> ? ? ? ? ?make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
> ? ? ? ? ?RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>
> # ? ? ? There is probably no reason to modify these rules
>
> .F.i:
> ? ? ? ?$(RM) $@
> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
> ? ? ? ?mv $*.i $(DEVTOP)/pick/$*.f90
> ? ? ? ?cp $*.F $(DEVTOP)/pick
>
> .F.o:
> ? ? ? ?$(RM) $@
> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F ?> $*.bb
> ? ? ? ?$(SED_FTN) $*.bb | $(CPP) > $*.f90
> ? ? ? ?$(RM) $*.b $*.bb
> ? ? ? ?if $(FGREP) '!$$OMP' $*.f90 ; then \
> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
> ? ? ? ? ?$(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
> ? ? ? ?else \
> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
> ? ? ? ? ?$(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
> ? ? ? ?fi
>
>
> .F.f90:
> ? ? ? ?$(RM) $@
> ? ? ? ?$(SED_FTN) $*.F > $*.b
> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b ?> $@
> ? ? ? ?$(RM) $*.b
>
>
> .f90.o:
> ? ? ? ?$(RM) $@
> ? ? ? ?$(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90
>
> .c.o:
> ? ? ? ?$(RM) $@
> ? ? ? ?$(CC) -o $@ -c $(CFLAGS) $*.c
>
> # A little more adventurous. ?Allow full opt on
> # mediation_integrate.o \
> # shift_domain_em.o \
> # solve_em.o ?<-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
> # mediation_feedback_domain.o : mediation_feedback_domain.F
> # mediation_force_domain.o : mediation_force_domain.F
> # mediation_interp_domain.o : mediation_interp_domain.F
>
> # compile these without high optimization to speed compile
> convert_nmm.o : convert_nmm.F
> init_modules_em.o : init_modules_em.F
> input_wrf.o : input_wrf.F
> module_io.o : module_io.F
> module_comm_dm.o : module_comm_dm.F
> module_configure.o : module_configure.F
> module_dm.o : module_dm.F
> module_domain.o : module_domain.F
> module_domain_type.o : module_domain_type.F
> module_alloc_space.o : module_alloc_space.F
> module_tiles.o : module_tiles.F
> module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
> module_initialize.o : module_initialize.F
> module_physics_init.o : module_physics_init.F
> module_initialize_b_wave.o : module_initialize_b_wave.F
> module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
> module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
> module_initialize_real.o : module_initialize_real.F
> module_initialize_real.o: module_initialize_real.F
> module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
> module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
> module_integrate.o : module_integrate.F
> module_io_mm5.o : module_io_mm5.F
> module_io_wrf.o : module_io_wrf.F
> module_si_io.o : module_si_io.F
> module_state_description.o : module_state_description.F
> output_wrf.o : output_wrf.F
>
>
> NMM_NEST_UTILS1.o : NMM_NEST_UTILS1.F
> solve_interface.o : solve_interface.F
> start_domain.o : start_domain.F
> start_domain_nmm.o : start_domain_nmm.F
> start_em.o : start_em.F
> wrf_auxhist10in.o : wrf_auxhist10in.F
> wrf_auxhist10out.o : wrf_auxhist10out.F
> wrf_auxhist11in.o : wrf_auxhist11in.F
> wrf_auxhist11out.o : wrf_auxhist11out.F
> wrf_auxhist1in.o : wrf_auxhist1in.F
> wrf_auxhist1out.o : wrf_auxhist1out.F
> wrf_auxhist2in.o : wrf_auxhist2in.F
> wrf_auxhist2out.o : wrf_auxhist2out.F
> wrf_auxhist3in.o : wrf_auxhist3in.F
> wrf_auxhist3out.o : wrf_auxhist3out.F
> wrf_auxhist4in.o : wrf_auxhist4in.F
> wrf_auxhist4out.o : wrf_auxhist4out.F
> wrf_auxhist5in.o : wrf_auxhist5in.F
> wrf_auxhist5out.o : wrf_auxhist5out.F
> wrf_auxhist6in.o : wrf_auxhist6in.F
> wrf_auxhist6out.o : wrf_auxhist6out.F
> wrf_auxhist7in.o : wrf_auxhist7in.F
> wrf_auxhist7out.o : wrf_auxhist7out.F
> wrf_auxhist8in.o : wrf_auxhist8in.F
> wrf_auxhist8out.o : wrf_auxhist8out.F
> wrf_auxhist9in.o : wrf_auxhist9in.F
> wrf_auxhist9out.o : wrf_auxhist9out.F
> wrf_auxinput10in.o : wrf_auxinput10in.F
> wrf_auxinput10out.o : wrf_auxinput10out.F
> wrf_auxinput11in.o : wrf_auxinput11in.F
> wrf_auxinput11out.o : wrf_auxinput11out.F
> wrf_auxinput1in.o : wrf_auxinput1in.F
> wrf_auxinput1out.o : wrf_auxinput1out.F
> wrf_auxinput2in.o : wrf_auxinput2in.F
> wrf_auxinput2out.o : wrf_auxinput2out.F
> wrf_auxinput3in.o : wrf_auxinput3in.F
> wrf_auxinput3out.o : wrf_auxinput3out.F
> wrf_auxinput4in.o : wrf_auxinput4in.F
> wrf_auxinput4out.o : wrf_auxinput4out.F
> wrf_auxinput5in.o : wrf_auxinput5in.F
> wrf_auxinput5out.o : wrf_auxinput5out.F
> wrf_auxinput6in.o : wrf_auxinput6in.F
> wrf_auxinput6out.o : wrf_auxinput6out.F
> wrf_auxinput7in.o : wrf_auxinput7in.F
>
> wrf_auxinput7out.o : wrf_auxinput7out.F
> wrf_auxinput8in.o : wrf_auxinput8in.F
> wrf_auxinput8out.o : wrf_auxinput8out.F
> wrf_auxinput9in.o : wrf_auxinput9in.F
> wrf_auxinput9out.o : wrf_auxinput9out.F
> wrf_bdyin.o : wrf_bdyin.F
> wrf_bdyout.o : wrf_bdyout.F
> wrf_ext_read_field.o : wrf_ext_read_field.F
> wrf_ext_write_field.o : wrf_ext_write_field.F
> wrf_fddaobs_in.o : wrf_fddaobs_in.F
> wrf_histin.o : wrf_histin.F
> wrf_histout.o : wrf_histout.F
> wrf_inputin.o : wrf_inputin.F
> wrf_inputout.o : wrf_inputout.F
> wrf_restartin.o : wrf_restartin.F
> wrf_restartout.o : wrf_restartout.F
> wrf_tsin.o : wrf_tsin.F
> nl_get_0_routines.o : nl_get_0_routines.F
> nl_get_1_routines.o : nl_get_1_routines.F
> nl_set_0_routines.o : nl_set_0_routines.F
> nl_set_1_routines.o : nl_set_1_routines.F
>
> convert_nmm.o \
> init_modules_em.o \
> module_dm.o \
> module_fddaobs_rtfdda.o \
> module_initialize.o \
> module_initialize_b_wave.o \
> module_initialize_hill2d_x.o \
> module_initialize_quarter_ss.o \
> module_initialize_real.o \
> module_initialize_squall2d_x.o \
> module_initialize_squall2d_y.o \
> module_integrate.o \
> module_io_mm5.o \
> module_io_wrf.o \
> module_si_io.o \
> module_tiles.o \
> output_wrf.o \
> NMM_NEST_UTILS1.o \
> solve_interface.o \
> start_domain.o \
> start_domain_nmm.o \
> shift_domain_nmm.o \
>
> start_em.o \
> wrf_fddaobs_in.o \
> wrf_tsin.o :
> ? ? ? ?$(RM) $@
> ? ? ? ?$(SED_FTN) $*.F > $*.b
> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b ?> $*.f90
> ? ? ? ?$(RM) $*.b
> ? ? ? ?if $(FGREP) '!$$OMP' $*.f90 ; then \
> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
> ? ? ? ?else \
> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
> ? ? ? ?fi
>
> module_sf_ruclsm.o : module_sf_ruclsm.F
>
> module_sf_ruclsm.o :
> ? ? ? ?$(RM) $@
> ? ? ? ?$(SED_FTN) $*.F > $*.b
> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b ?> $*.f90
> ? ? ? ?$(RM) $*.b
> ? ? ? ?if $(FGREP) '!$$OMP' $*.f90 ; then \
> ? ? ? ? ?echo COMPILING $*.F WITH OMP ; \
> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
> ? ? ? ?else \
> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
> ? ? ? ?fi
>
> input_wrf.o \
> module_domain.o \
> module_domain_type.o \
> module_physics_init.o \
> module_io.o \
>
> wrf_auxhist10in.o \
> wrf_auxhist10out.o \
> wrf_auxhist11in.o \
> wrf_auxhist11out.o \
> wrf_auxhist1in.o \
> wrf_auxhist1out.o \
> wrf_auxhist2in.o \
> wrf_auxhist2out.o \
> wrf_auxhist3in.o \
> wrf_auxhist3out.o \
> wrf_auxhist4in.o \
> wrf_auxhist4out.o \
> wrf_auxhist5in.o \
> wrf_auxhist5out.o \
> wrf_auxhist6in.o \
> wrf_auxhist6out.o \
> wrf_auxhist7in.o \
> wrf_auxhist7out.o \
> wrf_auxhist8in.o \
> wrf_auxhist8out.o \
> wrf_auxhist9in.o \
> wrf_auxhist9out.o \
> wrf_auxinput10in.o \
> wrf_auxinput10out.o \
> wrf_auxinput11in.o \
> wrf_auxinput11out.o \
> wrf_auxinput1in.o \
> wrf_auxinput1out.o \
> wrf_auxinput2in.o \
> wrf_auxinput2out.o \
> wrf_auxinput3in.o \
> wrf_auxinput3out.o \
> wrf_auxinput4in.o \
> wrf_auxinput4out.o \
> wrf_auxinput5in.o \
> wrf_auxinput5out.o \
> wrf_auxinput6in.o \
> wrf_auxinput6out.o \
>
> wrf_auxinput7in.o \
> wrf_auxinput7out.o \
> wrf_auxinput8in.o \
> wrf_auxinput8out.o \
> wrf_auxinput9in.o \
> wrf_auxinput9out.o \
> wrf_bdyin.o \
> wrf_bdyout.o \
> wrf_ext_read_field.o \
> wrf_ext_write_field.o \
> wrf_histin.o \
> wrf_histout.o \
> wrf_inputin.o \
> wrf_inputout.o \
> wrf_restartin.o \
> wrf_restartout.o \
> module_state_description.o \
> nl_set_0_routines.o \
> nl_set_1_routines.o \
> nl_get_0_routines.o \
> nl_get_1_routines.o \
> module_alloc_space.o \
> module_comm_dm.o \
> module_configure.o :
> ? ? ? ?$(RM) $@
> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F ?> $*.bb
> ? ? ? ?$(SED_FTN) $*.bb | $(CPP) > $*.f90
> ? ? ? ?$(RM) $*.b $*.bb
> ? ? ? ?$(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90
>
>
> Environmental Variables:
>
>
> USER=dbh409
> LOGNAME=dbh409
> HOME=/home/dbh409
> PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/bin:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/bin:/usr/local/intel/11.0/084/bin/intel64:/usr/local/intel/11.0/084/bin/intel64:/usr/local/maui/bin:/usr/local/maui/sbin:/usr/local/torque/bin:/usr/local/torque/sbin:/usr/local/Modules/3.2.6/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/home/software/netCDF/3.6.3/intel/mvapich/bin:/usr/local/ncarg_ifort/bin:.
> MAIL=/var/spool/mail/dbh409
> SHELL=/bin/tcsh
> SSH_CLIENT=10.237.0.175 49359 22
> SSH_CONNECTION=10.237.0.175 49359 129.237.228.235 22
> SSH_TTY=/dev/pts/3
> TERM=xterm
> HOSTTYPE=x86_64-linux
> VENDOR=unknown
> OSTYPE=linux
> MACHTYPE=x86_64
> SHLVL=1
> PWD=/home/dbh409/WRFV3
> GROUP=dbh409
> HOST=pequod
> REMOTEHOST=10.237.0.175
> HOSTNAME=pequod
> INPUTRC=/etc/inputrc
> LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.ogg=01;35:*.mp3=01;35:*.wav=01;35:
> G_BROKEN_FILENAMES=1
> SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
> KDE_IS_PRELINKED=1
> KDEDIR=/usr
> LANG=en_US.UTF-8
> LESSOPEN=|/usr/bin/lesspipe.sh %s
> MANPATH=/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/share/man:/usr/local/intel/11.0/084/man:/usr/local/intel/11.0/084/man:/usr/local/maui/man:/usr/local/torque/man:/usr/local/Modules/3.2.6/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man
> QTDIR=/usr/lib64/qt-3.3
> QTINC=/usr/lib64/qt-3.3/include
> QTLIB=/usr/lib64/qt-3.3/lib
> MODULE_VERSION=3.2.6
> MODULE_VERSION_STACK=3.2.6
> MODULESHOME=/usr/local/Modules/3.2.6
> MODULEPATH=/usr/local/Modules/versions:/usr/local/Modules/$MODULE_VERSION/modulefiles:/usr/local/Modules/modulefiles:
> LOADEDMODULES=null:modules:tools/torque-maui:compilers/64/intel-x86_64:openmpi/openmpi-1.3.2-ethernet-intel.64:tools/netcdf-4.1.3-intel:mpich2/mpich2-1.0.7-ethernet-intel.64
> CC=/usr/local/intel/11.0/084/bin/intel64/icc
> CCHOME=/usr/local/intel/11.0/084
> CXX=/usr/local/intel/11.0/084/bin/intel64/icpc
> F77=/usr/local/intel/11.0/084/bin/intel64/ifort
> F90=/usr/local/intel/11.0/084/bin/intel64/ifort
> FC=/usr/local/intel/11.0/084/bin/intel64/ifort
> FCHOME=/usr/local/intel/11.0/084
> INTEL_LICENSE_FILE=/opt/intel/licenses/l_RH4JJF9H.lic
> LD_LIBRARY_PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/lib:/usr/local/lib:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/lib:/usr/local/intel/11.0/084/lib/intel64:/usr/local/maui/lib:/usr/local/torque/lib
> MPIHOME=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0
> NETCDF=/usr/local
> _LMFILES_=/usr/local/Modules/modulefiles/null:/usr/local/Modules/modulefiles/modules:/usr/local/Modules/modulefiles/tools/torque-maui:/usr/local/Modules/modulefiles/compilers/64/intel-x86_64:/usr/local/Modules/modulefiles/openmpi/openmpi-1.3.2-ethernet-intel.64:/usr/local/Modules/modulefiles/tools/netcdf-4.1.3-intel:/usr/local/Modules/modulefiles/mpich2/mpich2-1.0.7-ethernet-intel.64
> NCARG_ROOT=/usr/local/ncarg_ifort
> RIP_ROOT=/home/dbh409/RIP4
> ITT_DIR=/usr/local/itt
> IDL_DIR=/usr/local/itt/idl71
>
>
> The NetCDF build location is /usr/local/ ?a slight accident, but I don't think it makes a difference that it's not /usr/local/netcdf-4.1.3.
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>

From maemarcus at gmail.com  Tue Aug  9 11:21:24 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Tue, 9 Aug 2011 21:21:24 +0400
Subject: [Wrf-users] WRF Compilation Error
In-Reply-To: <A644457BC398E2478714678865618326080C6D@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E2478714678865618326080BD4@EXCH10-MBX-02.home.ku.edu>
	<CAGR4S9HYG=eMBWtN10_L9uZ6bqtm0F+ZAe7s4zHnsB+Jd8in7Q@mail.gmail.com>
	<A644457BC398E2478714678865618326080C6D@EXCH10-MBX-02.home.ku.edu>
Message-ID: <CAGR4S9GhSDj_+gjyqW1yEZDgy3fix5bmh2PsfWcsRnd4=H05jg@mail.gmail.com>

Good, let's look here:

         if [ -f $(NETCDFPATH)/lib/libnetcdff.a ] ; then \
           $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL)
bitwise_operators.o ../../frame/wrf_debug.o
../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) -lnetcdff ;\
         else \
           $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL)
bitwise_operators.o ../../frame/wrf_debug.o
../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) ;\
         fi ; \

<-- it handles two cases: either file $(NETCDFPATH)/lib/libnetcdff.a
exists and then it is added to the linker arguments, or else it is
not. I don't know what it means, maybe diffwrf could be built without
netcdf support or can provide its own implementations? Anyway, if it
falls into "else" brach and those unresolved symbols are from
libnetcdff, then that's the problem. Could you check
$(NETCDFPATH)/lib/libnetcdff.a exists and/or add debugging echo
"Check"; line to the beginning of the "else" branch and see if it is
reached?

- D.

2011/8/9 Huber, David <dbh409 at ku.edu>:
> Hi Dmitry,
>
> Thanks for the reply. ?It took a little digging, but I found the makefile with this command in WRFV3/external/ionetcdf/makefile. ?Here's the block for diffwrf.F90:
>
> diffwrf: ? ? ? ? ? ? ? ?diffwrf.F90
> ? ? ? ?x=`echo "$(FC)" | awk '{print $$1}'` ; export x ; \
> ? ? ? ?if [ $$x = "gfortran" ] ; then \
> ? ? ? ? ? echo removing external declaration of iargc for gfortran ; \
> ? ? ? ? ? $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\
> ? ? ? ?else \
> ? ? ? ? ? $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \
> ? ? ? ?fi
> ? ? ? ?$(FC) -c $(FFLAGS) diffwrf.f
> ? ? ? ?if [ \( -f ../../frame/wrf_debug.o \) -a \( -f ../../frame/module_wrf_error.o \) -a \( -f $(ESMF_MOD_DEPENDENCE) \) ] ; then \
> ? ? ? ? ?echo "diffwrf io_netcdf is being built now. " ; \
> ? ? ? ? ?if [ -f $(NETCDFPATH)/lib/libnetcdff.a ] ; then \
> ? ? ? ? ? ?$(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) bitwise_operators.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) -lnetcdff ;\
> ? ? ? ? ?else \
> ? ? ? ? ? ?$(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) bitwise_operators.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o $(ESMF_IO_LIB_EXT) $(LIBS) ;\
> ? ? ? ? ?fi ; \
> ? ? ? ?else \
> ? ? ? ? ? echo "***************************************************************************** " ; \
> ? ? ? ? ? echo "*** Rerun compile to make diffwrf in external/io_netcdf directory ? ? ? ? *** " ; \
> ? ? ? ? ? echo "***************************************************************************** " ; \
> ? ? ? ?fi
>
>
> There was an @ before the line
> if[\( -f ../../frame/wrf_debug.o \) ...
> which I deleted, but the output did not change.
> I see the link for netcdff and the $LIBS, which is comprised of
> LIBS ? ?= -L$(NETCDFPATH)/lib -lnetcdf
>
> -Dave
>
>
> ________________________________________
> From: Dmitry N. Mikushin [maemarcus at gmail.com]
> Sent: Tuesday, August 09, 2011 10:44 AM
> To: Huber, David
> Cc: wrf-users at ucar.edu
> Subject: Re: [Wrf-users] WRF Compilation Error
>
> Hi,
>
>> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about.
>
> - This is usually harmless and is always around with Intel compiler.
>
>> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
>> wrf_io.o: In function `ext_ncd_get_var_info_':
>> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
>> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
>> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
>> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
>> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
>> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'
>
> These are unresolved externals, which should normally occur, if proper
> library is not added to the link command.
>
> Could you print out the exact linking command it is using?
>
>> diffwrf io_netcdf is being built now.
>
> - I suppose, linking command should go in the Makefile right after
> echoing "diffwrf io_netcdf is being built now". If it starts with "@",
> then it's hidden. Remove "@", and you will see the command. Once,
> exact command is known, it should be much easier to understand what's
> wrong.
>
> - D.
>
>
> 2011/8/9 Huber, David <dbh409 at ku.edu>:
>> Hello,
>>
>> I'm having an issue compiling WRF V3.1.1 with the Intel compilers using a multi-processor (dmpar) build. ?NCAR Graphics (6.0.0) and NetCDF (4.1.3) are also built with the Intel compilers. The configure.wrf file contents (minus comments) and a list of the environmental variables are shown at the end of this message. ?The following is the first of several warning/undefined reference messages:
>>
>>
>> ifort -w -ftz -align all -fno-alias -fp-model precise ?-FR -convert big_endian -c ?-I/usr/local/include -I../ioapi_share diffwrf.f
>> diffwrf.f(1629): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1630): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1709): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1710): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1711): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf.f(1712): (col. 7) remark: LOOP WAS VECTORIZED.
>> diffwrf io_netcdf is being built now.
>> /usr/local/intel/11.0/084/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
>> wrf_io.o: In function `ext_ncd_get_var_info_':
>> wrf_io.f:(.text+0x1ef): undefined reference to `nf_inq_varid_'
>> wrf_io.f:(.text+0x740): undefined reference to `nf_inq_vartype_'
>> wrf_io.f:(.text+0x883): undefined reference to `nf_get_att_int_'
>> wrf_io.f:(.text+0x1158): undefined reference to `nf_get_att_text_'
>> wrf_io.f:(.text+0x142e): undefined reference to `nf_inq_vardimid_'
>> wrf_io.f:(.text+0x1595): undefined reference to `nf_inq_dimlen_'
>>
>>
>> I'm not certain if this is an issue with NetCDF, the shared object, or what the deal with feupdateenv is about. ?I have successfully built WRF and WPS on this system before, but this is the first time I have tried it with everything compiled with icc and ifort. ?Any suggestions would be much appreciated.
>>
>> Thanks,
>>
>> Dave
>>
>>
>> configure.wrf:
>>
>>
>> SHELL ? ? ? ? ? = ? ? ? /bin/sh
>> DEVTOP ? ? ? ? ?= ? ? ? `pwd`
>> LIBINCLUDE ? ? ?= ? ? ? .
>> .SUFFIXES: .F .i .o .f90 .c
>>
>> COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
>> ? ? ? ? ? -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
>> ? ? ? ? ? -DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
>> ? ? ? ? ? -DDA_CORE=$(WRF_DA_CORE) \
>>
>> ? ? ? ? ? -DEXP_CORE=$(WRF_EXP_CORE)
>>
>>
>> MAX_DOMAINS ? ? = ? ? ? 21
>>
>> CONFIG_BUF_LEN ?= ? ? ? 32768
>>
>>
>> NATIVE_RWORDSIZE = 4
>>
>> SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe
>>
>> IO_GRIB_SHARE_DIR =
>>
>> ESMF_COUPLING ? ? ? = 0
>> ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
>>
>> ESMF_IO_INC ? ? ? ? = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
>> ESMF_MOD_INC ? ? ? ?= ?$(ESMF_IO_INC)
>> ESMF_IO_DEFS ? ? ? ?=
>> ESMF_TARGET ? ? ? ? = esmf_time
>>
>>
>> LIBWRFLIB = libwrflib.a
>>
>>
>> DMPARALLEL ? ? ?= ? ? ? ?1
>> OMPCPP ? ? ? ? ?= ? ? ? # -D_OPENMP
>> OMP ? ? ? ? ? ? = ? ? ? # -openmp -fpp -auto
>> SFC ? ? ? ? ? ? = ? ? ? ifort
>> SCC ? ? ? ? ? ? = ? ? ? icc
>> DM_FC ? ? ? ? ? = ? ? ? mpif90 -f90=$(SFC)
>> DM_CC ? ? ? ? ? = ? ? ? mpicc -cc=$(SCC) -DMPI2_SUPPORT
>> FC ? ? ? ? ? ? ?= ? ? ? ?$(DM_FC)
>> CC ? ? ? ? ? ? ?= ? ? ? $(DM_CC) -DFSEEKO64_OK
>> LD ? ? ? ? ? ? ?= ? ? ? $(FC)
>> RWORDSIZE ? ? ? = ? ? ? $(NATIVE_RWORDSIZE)
>> PROMOTION ? ? ? = ? ? ? -i4
>> ARCH_LOCAL ? ? ?= ? ? ? -DNONSTANDARD_SYSTEM_FUNC
>> CFLAGS_LOCAL ? ?= ? ? ? -w -O3 -ip
>> LDFLAGS_LOCAL ? = ? ? ? -ip
>> CPLUSPLUSLIB ? ?=
>> ESMF_LDFLAG ? ? = ? ? ? $(CPLUSPLUSLIB)
>> FCOPTIM ? ? ? ? = ? ? ? -O3
>> FCREDUCEDOPT ? ?= ? ? ? $(FCOPTIM)
>> FCNOOPT ? ? ? ? = ? ? ? -O0 -fno-inline -fno-ip
>> FCDEBUG ? ? ? ? = ? ? ? # -g $(FCNOOPT) -traceback
>> FORMAT_FIXED ? ?= ? ? ? -FI
>> FORMAT_FREE ? ? = ? ? ? -FR
>> FCSUFFIX ? ? ? ?=
>> BYTESWAPIO ? ? ?= ? ? ? -convert big_endian
>> FCBASEOPTS ? ? ?= ? ? ? -w -ftz -align all -fno-alias -fp-model precise $(FCDEBUG) $(FORMAT_FREE) $(BYTESWAPIO)
>> MODULE_SRCH_FLAG =
>> TRADFLAG ? ? ? ?= ? ? ?-traditional
>> CPP ? ? ? ? ? ? = ? ? ?/lib/cpp -C -P
>> AR ? ? ? ? ? ? ?= ? ? ?ar
>> ARFLAGS ? ? ? ? = ? ? ?ru
>> M4 ? ? ? ? ? ? ?= ? ? ?m4
>> RANLIB ? ? ? ? ?= ? ? ?ranlib
>> CC_TOOLS ? ? ? ?= ? ? ?$(SCC)
>>
>> FGREP = fgrep -iq
>>
>> ARCHFLAGS ? ? ? = ? ?$(COREDEFS) -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=4 \
>> ? ? ? ? ? ? ? ? ? ? $(ARCH_LOCAL) \
>> ? ? ? ? ? ? ? ? ? ? $(DA_ARCHFLAGS) \
>> ? ? ? ? ? ? ? ? ? ? ?-DDM_PARALLEL \
>>
>> ? ? ? ? ? ? ? ? ? ? ? \
>> ? ? ? ? ? ? ? ? ? ? ?-DNETCDF \
>> ? ? ? ? ? ? ? ? ? ? ? \
>> ? ? ? ? ? ? ? ? ? ? ? \
>> ? ? ? ? ? ? ? ? ? ? ? \
>> ? ? ? ? ? ? ? ? ? ? ? \
>> ? ? ? ? ? ? ? ? ? ? ? \
>> ? ? ? ? ? ? ? ? ? ? ? \
>> ? ? ? ? ? ? ? ? ? ? ?-DGRIB1 \
>> ? ? ? ? ? ? ? ? ? ? ?-DINTIO \
>> ? ? ? ? ? ? ? ? ? ? ?-DLIMIT_ARGS \
>> ? ? ? ? ? ? ? ? ? ? ?-DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
>> ? ? ? ? ? ? ? ? ? ? ?-DMAX_DOMAINS_F=$(MAX_DOMAINS) \
>> ? ? ? ? ? ? ? ? ? ? ?-DNMM_NEST=$(WRF_NMM_NEST)
>> CFLAGS ? ? ? ? ?= ? ?$(CFLAGS_LOCAL) -DDM_PARALLEL
>> FCFLAGS ? ? ? ? = ? ?$(FCOPTIM) $(FCBASEOPTS)
>> ESMF_LIB_FLAGS ?=
>> ESMF_IO_LIB ? ? = ? ?$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
>> ESMF_IO_LIB_EXT = ? ?-L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/libesmf_time.a
>> INCLUDE_MODULES = ? ?$(MODULE_SRCH_FLAG) \
>> ? ? ? ? ? ? ? ? ? ? $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
>> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/main \
>> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
>> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/external/io_int \
>> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/frame \
>> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/share \
>> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/phys \
>> ? ? ? ? ? ? ? ? ? ? ?-I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
>> ? ? ? ? ? ? ? ? ? ? ? \
>>
>> REGISTRY ? ? ? ?= ? ?Registry
>>
>> LIB_BUNDLED ? ? = \
>> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 -lfftpack \
>> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/io_grib1 -lio_grib1 \
>> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/io_grib_share -lio_grib_share \
>> ? ? ? ? ? ? ? ? ? ? -L$(WRF_SRC_ROOT_DIR)/external/io_int -lwrfio_int \
>> ? ? ? ? ? ? ? ? ? ? $(ESMF_IO_LIB) \
>> ? ? ? ? ? ? ? ? ? ? $(ESMF_IO_LIB) \
>> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
>> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
>> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
>>
>> LIB_EXTERNAL ? ?= \
>>
>> ? ? ? ? ? ? ? ? ? ? $(WRF_SRC_ROOT_DIR)/external/io_netcdf/libwrfio_nf.a -L/usr/local/lib -lnetcdff -lnetcdf
>>
>> LIB ? ? ? ? ? ? = ? ?$(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
>> LDFLAGS ? ? ? ? = ? ?$(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
>> ENVCOMPDEFS ? ? =
>> WRF_CHEM ? ? ? ?= ? ? ? 0
>> CPPFLAGS ? ? ? ?= ? ?$(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
>> NETCDFPATH ? ? ?= ? ?/usr/local
>> PNETCDFPATH ? ? =
>>
>> bundled: ?wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack
>> external: ?wrfio_nf ? $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
>>
>> ######################
>> externals: bundled external
>>
>> gen_comms_serial :
>> ? ? ? ?( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )
>>
>> module_dm_serial :
>> ? ? ? ?( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )
>>
>> gen_comms_rsllite :
>> ? ? ? ?( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
>> ? ? ? ? ?/bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
>> ? ? ? ? ?cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )
>>
>> module_dm_rsllite :
>> ? ? ? ?( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
>> ? ? ? ? ?cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
>>
>> wrfio_nf :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
>> ? ? ? ? ?make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> ? ? ? ? ?CC="$(SCC)" CFLAGS="$(CFLAGS)" \
>> ? ? ? ? ?FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> wrfio_pnf :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
>> ? ? ? ? ?make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> ? ? ? ? ?FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>>
>>
>> wrfio_grib_share :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
>> ? ? ? ? ?make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> ? ? ? ? ?FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>>
>> wrfio_grib1 :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
>> ? ? ? ? ?make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> ? ? ? ? ?FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
>>
>> wrfio_grib2 :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
>> ? ? ? ? ?make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
>> ? ? ? ? ?CPP="$(CPP)" \
>> ? ? ? ? ?FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
>> ? ? ? ? ?FIXED="$(FORMAT_FIXED)" archive)
>>
>> wrfio_int :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
>> ? ? ? ? ?make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
>> ? ? ? ? ?FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" \
>> ? ? ? ? ?TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" all )
>>
>> esmf_time :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
>> ? ? ? ? ?make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
>> ? ? ? ? ?CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> fftpack :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
>> ? ? ? ? ?make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
>> ? ? ? ? ?FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
>> ? ? ? ? ?CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
>> ? ? ? ? ?$(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )
>>
>>
>> LN ? ? ?= ? ? ? ln -sf
>> MAKE ? ?= ? ? ? make -i -r
>> RM ? ? ?= ? ? ? rm -f
>>
>>
>> # These sub-directory builds are identical across all architectures
>>
>> wrf_ioapi_includes :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
>> ? ? ? ? ?$(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> wrfio_esmf :
>> ? ? ? ?( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
>> ? ? ? ? ?make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
>> ? ? ? ? ?RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
>>
>> # ? ? ? There is probably no reason to modify these rules
>>
>> .F.i:
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
>> ? ? ? ?mv $*.i $(DEVTOP)/pick/$*.f90
>> ? ? ? ?cp $*.F $(DEVTOP)/pick
>>
>> .F.o:
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F ?> $*.bb
>> ? ? ? ?$(SED_FTN) $*.bb | $(CPP) > $*.f90
>> ? ? ? ?$(RM) $*.b $*.bb
>> ? ? ? ?if $(FGREP) '!$$OMP' $*.f90 ; then \
>> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>> ? ? ? ? ?$(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
>> ? ? ? ?else \
>> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>> ? ? ? ? ?$(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
>> ? ? ? ?fi
>>
>>
>> .F.f90:
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(SED_FTN) $*.F > $*.b
>> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b ?> $@
>> ? ? ? ?$(RM) $*.b
>>
>>
>> .f90.o:
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90
>>
>> .c.o:
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(CC) -o $@ -c $(CFLAGS) $*.c
>>
>> # A little more adventurous. ?Allow full opt on
>> # mediation_integrate.o \
>> # shift_domain_em.o \
>> # solve_em.o ?<-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
>> # mediation_feedback_domain.o : mediation_feedback_domain.F
>> # mediation_force_domain.o : mediation_force_domain.F
>> # mediation_interp_domain.o : mediation_interp_domain.F
>>
>> # compile these without high optimization to speed compile
>> convert_nmm.o : convert_nmm.F
>> init_modules_em.o : init_modules_em.F
>> input_wrf.o : input_wrf.F
>> module_io.o : module_io.F
>> module_comm_dm.o : module_comm_dm.F
>> module_configure.o : module_configure.F
>> module_dm.o : module_dm.F
>> module_domain.o : module_domain.F
>> module_domain_type.o : module_domain_type.F
>> module_alloc_space.o : module_alloc_space.F
>> module_tiles.o : module_tiles.F
>> module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
>> module_initialize.o : module_initialize.F
>> module_physics_init.o : module_physics_init.F
>> module_initialize_b_wave.o : module_initialize_b_wave.F
>> module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
>> module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
>> module_initialize_real.o : module_initialize_real.F
>> module_initialize_real.o: module_initialize_real.F
>> module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
>> module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
>> module_integrate.o : module_integrate.F
>> module_io_mm5.o : module_io_mm5.F
>> module_io_wrf.o : module_io_wrf.F
>> module_si_io.o : module_si_io.F
>> module_state_description.o : module_state_description.F
>> output_wrf.o : output_wrf.F
>>
>>
>> NMM_NEST_UTILS1.o : NMM_NEST_UTILS1.F
>> solve_interface.o : solve_interface.F
>> start_domain.o : start_domain.F
>> start_domain_nmm.o : start_domain_nmm.F
>> start_em.o : start_em.F
>> wrf_auxhist10in.o : wrf_auxhist10in.F
>> wrf_auxhist10out.o : wrf_auxhist10out.F
>> wrf_auxhist11in.o : wrf_auxhist11in.F
>> wrf_auxhist11out.o : wrf_auxhist11out.F
>> wrf_auxhist1in.o : wrf_auxhist1in.F
>> wrf_auxhist1out.o : wrf_auxhist1out.F
>> wrf_auxhist2in.o : wrf_auxhist2in.F
>> wrf_auxhist2out.o : wrf_auxhist2out.F
>> wrf_auxhist3in.o : wrf_auxhist3in.F
>> wrf_auxhist3out.o : wrf_auxhist3out.F
>> wrf_auxhist4in.o : wrf_auxhist4in.F
>> wrf_auxhist4out.o : wrf_auxhist4out.F
>> wrf_auxhist5in.o : wrf_auxhist5in.F
>> wrf_auxhist5out.o : wrf_auxhist5out.F
>> wrf_auxhist6in.o : wrf_auxhist6in.F
>> wrf_auxhist6out.o : wrf_auxhist6out.F
>> wrf_auxhist7in.o : wrf_auxhist7in.F
>> wrf_auxhist7out.o : wrf_auxhist7out.F
>> wrf_auxhist8in.o : wrf_auxhist8in.F
>> wrf_auxhist8out.o : wrf_auxhist8out.F
>> wrf_auxhist9in.o : wrf_auxhist9in.F
>> wrf_auxhist9out.o : wrf_auxhist9out.F
>> wrf_auxinput10in.o : wrf_auxinput10in.F
>> wrf_auxinput10out.o : wrf_auxinput10out.F
>> wrf_auxinput11in.o : wrf_auxinput11in.F
>> wrf_auxinput11out.o : wrf_auxinput11out.F
>> wrf_auxinput1in.o : wrf_auxinput1in.F
>> wrf_auxinput1out.o : wrf_auxinput1out.F
>> wrf_auxinput2in.o : wrf_auxinput2in.F
>> wrf_auxinput2out.o : wrf_auxinput2out.F
>> wrf_auxinput3in.o : wrf_auxinput3in.F
>> wrf_auxinput3out.o : wrf_auxinput3out.F
>> wrf_auxinput4in.o : wrf_auxinput4in.F
>> wrf_auxinput4out.o : wrf_auxinput4out.F
>> wrf_auxinput5in.o : wrf_auxinput5in.F
>> wrf_auxinput5out.o : wrf_auxinput5out.F
>> wrf_auxinput6in.o : wrf_auxinput6in.F
>> wrf_auxinput6out.o : wrf_auxinput6out.F
>> wrf_auxinput7in.o : wrf_auxinput7in.F
>>
>> wrf_auxinput7out.o : wrf_auxinput7out.F
>> wrf_auxinput8in.o : wrf_auxinput8in.F
>> wrf_auxinput8out.o : wrf_auxinput8out.F
>> wrf_auxinput9in.o : wrf_auxinput9in.F
>> wrf_auxinput9out.o : wrf_auxinput9out.F
>> wrf_bdyin.o : wrf_bdyin.F
>> wrf_bdyout.o : wrf_bdyout.F
>> wrf_ext_read_field.o : wrf_ext_read_field.F
>> wrf_ext_write_field.o : wrf_ext_write_field.F
>> wrf_fddaobs_in.o : wrf_fddaobs_in.F
>> wrf_histin.o : wrf_histin.F
>> wrf_histout.o : wrf_histout.F
>> wrf_inputin.o : wrf_inputin.F
>> wrf_inputout.o : wrf_inputout.F
>> wrf_restartin.o : wrf_restartin.F
>> wrf_restartout.o : wrf_restartout.F
>> wrf_tsin.o : wrf_tsin.F
>> nl_get_0_routines.o : nl_get_0_routines.F
>> nl_get_1_routines.o : nl_get_1_routines.F
>> nl_set_0_routines.o : nl_set_0_routines.F
>> nl_set_1_routines.o : nl_set_1_routines.F
>>
>> convert_nmm.o \
>> init_modules_em.o \
>> module_dm.o \
>> module_fddaobs_rtfdda.o \
>> module_initialize.o \
>> module_initialize_b_wave.o \
>> module_initialize_hill2d_x.o \
>> module_initialize_quarter_ss.o \
>> module_initialize_real.o \
>> module_initialize_squall2d_x.o \
>> module_initialize_squall2d_y.o \
>> module_integrate.o \
>> module_io_mm5.o \
>> module_io_wrf.o \
>> module_si_io.o \
>> module_tiles.o \
>> output_wrf.o \
>> NMM_NEST_UTILS1.o \
>> solve_interface.o \
>> start_domain.o \
>> start_domain_nmm.o \
>> shift_domain_nmm.o \
>>
>> start_em.o \
>> wrf_fddaobs_in.o \
>> wrf_tsin.o :
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(SED_FTN) $*.F > $*.b
>> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b ?> $*.f90
>> ? ? ? ?$(RM) $*.b
>> ? ? ? ?if $(FGREP) '!$$OMP' $*.f90 ; then \
>> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
>> ? ? ? ?else \
>> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
>> ? ? ? ?fi
>>
>> module_sf_ruclsm.o : module_sf_ruclsm.F
>>
>> module_sf_ruclsm.o :
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(SED_FTN) $*.F > $*.b
>> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b ?> $*.f90
>> ? ? ? ?$(RM) $*.b
>> ? ? ? ?if $(FGREP) '!$$OMP' $*.f90 ; then \
>> ? ? ? ? ?echo COMPILING $*.F WITH OMP ; \
>> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
>> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
>> ? ? ? ?else \
>> ? ? ? ? ?if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
>> ? ? ? ? ?$(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
>> ? ? ? ?fi
>>
>> input_wrf.o \
>> module_domain.o \
>> module_domain_type.o \
>> module_physics_init.o \
>> module_io.o \
>>
>> wrf_auxhist10in.o \
>> wrf_auxhist10out.o \
>> wrf_auxhist11in.o \
>> wrf_auxhist11out.o \
>> wrf_auxhist1in.o \
>> wrf_auxhist1out.o \
>> wrf_auxhist2in.o \
>> wrf_auxhist2out.o \
>> wrf_auxhist3in.o \
>> wrf_auxhist3out.o \
>> wrf_auxhist4in.o \
>> wrf_auxhist4out.o \
>> wrf_auxhist5in.o \
>> wrf_auxhist5out.o \
>> wrf_auxhist6in.o \
>> wrf_auxhist6out.o \
>> wrf_auxhist7in.o \
>> wrf_auxhist7out.o \
>> wrf_auxhist8in.o \
>> wrf_auxhist8out.o \
>> wrf_auxhist9in.o \
>> wrf_auxhist9out.o \
>> wrf_auxinput10in.o \
>> wrf_auxinput10out.o \
>> wrf_auxinput11in.o \
>> wrf_auxinput11out.o \
>> wrf_auxinput1in.o \
>> wrf_auxinput1out.o \
>> wrf_auxinput2in.o \
>> wrf_auxinput2out.o \
>> wrf_auxinput3in.o \
>> wrf_auxinput3out.o \
>> wrf_auxinput4in.o \
>> wrf_auxinput4out.o \
>> wrf_auxinput5in.o \
>> wrf_auxinput5out.o \
>> wrf_auxinput6in.o \
>> wrf_auxinput6out.o \
>>
>> wrf_auxinput7in.o \
>> wrf_auxinput7out.o \
>> wrf_auxinput8in.o \
>> wrf_auxinput8out.o \
>> wrf_auxinput9in.o \
>> wrf_auxinput9out.o \
>> wrf_bdyin.o \
>> wrf_bdyout.o \
>> wrf_ext_read_field.o \
>> wrf_ext_write_field.o \
>> wrf_histin.o \
>> wrf_histout.o \
>> wrf_inputin.o \
>> wrf_inputout.o \
>> wrf_restartin.o \
>> wrf_restartout.o \
>> module_state_description.o \
>> nl_set_0_routines.o \
>> nl_set_1_routines.o \
>> nl_get_0_routines.o \
>> nl_get_1_routines.o \
>> module_alloc_space.o \
>> module_comm_dm.o \
>> module_configure.o :
>> ? ? ? ?$(RM) $@
>> ? ? ? ?$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F ?> $*.bb
>> ? ? ? ?$(SED_FTN) $*.bb | $(CPP) > $*.f90
>> ? ? ? ?$(RM) $*.b $*.bb
>> ? ? ? ?$(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90
>>
>>
>> Environmental Variables:
>>
>>
>> USER=dbh409
>> LOGNAME=dbh409
>> HOME=/home/dbh409
>> PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/bin:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/bin:/usr/local/intel/11.0/084/bin/intel64:/usr/local/intel/11.0/084/bin/intel64:/usr/local/maui/bin:/usr/local/maui/sbin:/usr/local/torque/bin:/usr/local/torque/sbin:/usr/local/Modules/3.2.6/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/home/software/netCDF/3.6.3/intel/mvapich/bin:/usr/local/ncarg_ifort/bin:.
>> MAIL=/var/spool/mail/dbh409
>> SHELL=/bin/tcsh
>> SSH_CLIENT=10.237.0.175 49359 22
>> SSH_CONNECTION=10.237.0.175 49359 129.237.228.235 22
>> SSH_TTY=/dev/pts/3
>> TERM=xterm
>> HOSTTYPE=x86_64-linux
>> VENDOR=unknown
>> OSTYPE=linux
>> MACHTYPE=x86_64
>> SHLVL=1
>> PWD=/home/dbh409/WRFV3
>> GROUP=dbh409
>> HOST=pequod
>> REMOTEHOST=10.237.0.175
>> HOSTNAME=pequod
>> INPUTRC=/etc/inputrc
>> LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.ogg=01;35:*.mp3=01;35:*.wav=01;35:
>> G_BROKEN_FILENAMES=1
>> SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
>> KDE_IS_PRELINKED=1
>> KDEDIR=/usr
>> LANG=en_US.UTF-8
>> LESSOPEN=|/usr/bin/lesspipe.sh %s
>> MANPATH=/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/share/man:/usr/local/intel/11.0/084/man:/usr/local/intel/11.0/084/man:/usr/local/maui/man:/usr/local/torque/man:/usr/local/Modules/3.2.6/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man
>> QTDIR=/usr/lib64/qt-3.3
>> QTINC=/usr/lib64/qt-3.3/include
>> QTLIB=/usr/lib64/qt-3.3/lib
>> MODULE_VERSION=3.2.6
>> MODULE_VERSION_STACK=3.2.6
>> MODULESHOME=/usr/local/Modules/3.2.6
>> MODULEPATH=/usr/local/Modules/versions:/usr/local/Modules/$MODULE_VERSION/modulefiles:/usr/local/Modules/modulefiles:
>> LOADEDMODULES=null:modules:tools/torque-maui:compilers/64/intel-x86_64:openmpi/openmpi-1.3.2-ethernet-intel.64:tools/netcdf-4.1.3-intel:mpich2/mpich2-1.0.7-ethernet-intel.64
>> CC=/usr/local/intel/11.0/084/bin/intel64/icc
>> CCHOME=/usr/local/intel/11.0/084
>> CXX=/usr/local/intel/11.0/084/bin/intel64/icpc
>> F77=/usr/local/intel/11.0/084/bin/intel64/ifort
>> F90=/usr/local/intel/11.0/084/bin/intel64/ifort
>> FC=/usr/local/intel/11.0/084/bin/intel64/ifort
>> FCHOME=/usr/local/intel/11.0/084
>> INTEL_LICENSE_FILE=/opt/intel/licenses/l_RH4JJF9H.lic
>> LD_LIBRARY_PATH=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0/lib:/usr/local/lib:/usr/local/openmpi/openmpi-1.3.2/x86_64/intel11.0/lib:/usr/local/intel/11.0/084/lib/intel64:/usr/local/maui/lib:/usr/local/torque/lib
>> MPIHOME=/usr/local/mpich2/mpich2-1.0.7/x86_64/intel11.0
>> NETCDF=/usr/local
>> _LMFILES_=/usr/local/Modules/modulefiles/null:/usr/local/Modules/modulefiles/modules:/usr/local/Modules/modulefiles/tools/torque-maui:/usr/local/Modules/modulefiles/compilers/64/intel-x86_64:/usr/local/Modules/modulefiles/openmpi/openmpi-1.3.2-ethernet-intel.64:/usr/local/Modules/modulefiles/tools/netcdf-4.1.3-intel:/usr/local/Modules/modulefiles/mpich2/mpich2-1.0.7-ethernet-intel.64
>> NCARG_ROOT=/usr/local/ncarg_ifort
>> RIP_ROOT=/home/dbh409/RIP4
>> ITT_DIR=/usr/local/itt
>> IDL_DIR=/usr/local/itt/idl71
>>
>>
>> The NetCDF build location is /usr/local/ ?a slight accident, but I don't think it makes a difference that it's not /usr/local/netcdf-4.1.3.
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
>
>

From J.Kala at murdoch.edu.au  Wed Aug 10 00:08:32 2011
From: J.Kala at murdoch.edu.au (Jatin Kala)
Date: Wed, 10 Aug 2011 14:08:32 +0800
Subject: [Wrf-users] troubles, could not find trapping x locations
Message-ID: <BB91CFD22006F54687E86A28D1AAC62C07002910@PLUTO.ad.murdoch.edu.au>

Hi,

 

I am getting a ", could not find trapping x locations" when running
real.exe. This is using data I have written myself in binary format, as
the data was in netcdf, and not GRIB. I looked at the written pressure
fields, and they look OK. 


Any suggestions at what else I should be looking at? Has anybody else
had this "trapping X locations " issue?

 

Here is the error msg:

 

target pressure and value =  NaN             0.0000000E+00

column of pressure and value =    11.53211      0.0000000E+00

column of pressure and value =    9.182385       15130.88

-------------- FATAL CALLED ---------------

FATAL CALLED FROM FILE:  <stdin>  LINE:    4142

troubles, could not find trapping x locations

-------------------------------------------

 

 

Cheers,

Jatin 

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From littaaj at gmail.com  Thu Aug 11 23:14:08 2011
From: littaaj at gmail.com (Litta A J)
Date: Fri, 12 Aug 2011 10:44:08 +0530
Subject: [Wrf-users] issue in 15 minute WRF-NMM output creation
Message-ID: <CAC=SVAUUL=F5Pp9OZ84JdpLTWyniLnmw26Mg_ztUxEYgwv6G1Q@mail.gmail.com>

Dear sir,

I am trying to generate 15 minute WRF_NMM model output. WPPV3.2 module has
properly created the output (ie 15 minute interval).

I have concatenated the files and named as *all*. Then i have used
grib2ctl.pl command to generate ctl file.

I have edited the tdef line of  all.ctl as follows

*tdef 97 linear 00Z11jun2011 15mn *

I have also tried to edit tdef as follows
*
*
*tdef 97 linear 00:00Z**11jun2011 15mn *

Then i have used gribmap -i all.ctl.

Its properly plot the hourly data. But not 15 minute interval..

Can you please tell me, how to create 15 minute interval data from WRF model
output.


regards,
Litta
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From dbh409 at ku.edu  Sun Aug 14 11:09:03 2011
From: dbh409 at ku.edu (Huber, David)
Date: Sun, 14 Aug 2011 17:09:03 +0000
Subject: [Wrf-users] Writing Binary Files for WPS
Message-ID: <A644457BC398E24787146788656183260811A2@EXCH10-MBX-02.home.ku.edu>

Hello,

I am trying to ingest CCSM output data into WPS 3.3 for initial and boundary conditions of WRF.  I have attached the NCL code, the stub file, and the fortran code that read the CCSM output and generates the unformatted binary files that metgrid.exe needs in order to generate the NetCDF files necessary for WRF.  The code runs properly, and the binary files are generated with the proper fields.  After providing soft links to the binary files and running geogrid.exe, I ran metgrid.exe and received the following error message:

pequod:dbh409> ./metgrid.exe
Processing domain 1 of 1
 Processing 1990-01-01_00
    SF
    3D
    2D
ERROR: The mandatory field TT was not found in any input data.

I have double checked the binary files and I've been able to find the TT field in the "3D" files, but for some reason metgrid.exe is unable to recognize it.  My best guess is that metgrid.exe is expecting a different type of binary file than is being provided, which likely means there is an issue in the way NCL and WPS were compiled such that they do not generate the same types of binary files.  NCL (6.0.0), WRF, WPS, and NCAR Graphics are all built using gfortran and gcc.  NCL and NCAR Graphics used the precompiled binaries while WRF and WPS are both built using the serial option.  NetCDF was built using the Intel compilers, which I believe was responsible for some errors in the WPS compilations, but ungrib.exe, metgrid.exe, and geogrid.exe were all created without issue.  Note that this build of WPS/WRF will not be used to actually run the simulations.  Instead, it is only used to run metgrid.exe.

Do you know if I should change any of the flags in the building of WPS and/or WRF so that metgrid.exe expects the correct type of binary file?  Does NCL need to be custom built to accomplish what I need to do?

Thanks,

Dave

From jiwen.fan at pnnl.gov  Sat Aug 13 23:46:48 2011
From: jiwen.fan at pnnl.gov (Fan, Jiwen)
Date: Sat, 13 Aug 2011 22:46:48 -0700
Subject: [Wrf-users] Reminder: travel grant application deadline Sep 1 for
 Young Scientist Forum in 2011 IYC O3 and Climate Change Symposium
Message-ID: <BAE16308EF67D24E9061D1CA8FA2433101AFF6D1D8ED@EMAIL04.pnl.gov>

Dear young hip scientists,

The deadline for applying for a travel fellowship to attend the 2011 IYC O3 and Climate Change Symposium (http://www.2011-iyc-o3.org/) is approaching (Sep 1, 2011).  The benefits of the travel fellowship on the basis of the actual need include: (1) paid registration fee, (2) hotel accommodation (shared double occupancy for 5 nights), and (3) airfare reimbursement up to $500. Each applicant is required to complete

    * an online application form, containing the applicant's contact information,
    * a description of the applicant's current research (less than 300 words),
    * a statement (a few sentences) on the potential benefits of this travel grant to the applicant's future professional goals,
    * an abstract for presentation at the young scientist forum (less than 300 words),
    * and a two-page cv in PDF format.

Here is the website to submit your application: http://www.2011-iyc-o3.org/studentsyoung-scientists/travel-grant-for-young-scientists

Please consider joining us in this unique symposium and also please pass this email on to others who may be interested (especially postdocs and graduate students you know)!

Please feel free to contact us for any questions. Apologies for cross-posting!

Jiwen Fan (PNNL),   Trude Storelvmo (Yale Univ.), and Annmarie G. Carlton (Rutgers Univ.)
The organizers of Young Scientist Forum in 2011 IYC O3 and Climate Change Symposium 

----
Jiwen Fan, Ph.D.
Scientist
Atmospheric Science & Global Change Division
Pacific Northwest National Laboratory
PO Box 999, MSIN K9-24
Richland, WA 99352 
509/375-2116 (o)
Jiwen.fan at pnl.gov



From M.Yap at massey.ac.nz  Thu Aug 18 19:45:34 2011
From: M.Yap at massey.ac.nz (Yap, Mike)
Date: Fri, 19 Aug 2011 13:45:34 +1200
Subject: [Wrf-users] WRF3.3 - syntax error in module_fr_sfire_core?
Message-ID: <92FDFD8B26EB6542B1E1BF017BB998D16C923549AF@TUR-EXCHMBX.massey.ac.nz>

Hi,

I got the same message when building WRF 3.3

PGF90-S-0034-Syntax error at or near end of line (module_fr_sfire_core.f90: 182)
  0 inform,   0 warnings,   1 severes, 0 fatal for nearest
make[3]: [module_fr_sfire_core.o] Error 2 (ignored)

Anyone have a solution for this ?

Thanks
Mike

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From mkudsy at gmail.com  Thu Aug 18 22:31:26 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Fri, 19 Aug 2011 11:31:26 +0700
Subject: [Wrf-users] WRFVAR with radiance takes forever
Message-ID: <CADFGn__xHreg28Fe1aB7f5rM_DHh7s+zcGk3d=xz7=xFSv+wmA@mail.gmail.com>

Dear all,

I am now attempting radiance assimilation using WRFvar 3.3, in which I used
the testing data obtained from the internet. The assimilated data was
obtained from WRF

gdas1.t12z.1bamua.tm00.bufr_d.linux ---> amsua.bufr
gdas1.t12z.1bamub.tm00.bufr_d.linux ---> amsub.bufr
gdas1.t12z.prepbufr.nr.linux               ---> ob.bufr

for the date 2008020512 I obtained from Summer Tutorial in Korea

My friend said that the files on the internet are in big_endian linux
format, so I use ssrc.exe to convert them to little_endia, use cwordsh to
unblock and reblock but the run did not proceed as expected. After I left
the computer for one hour, even one night it stuck as the following



[kudsy at cumulus 2008020512]$ ./da_wrfvar.exe
***  VARIATIONAL ANALYSIS ***
 Namelist perturbation not found in namelist.input. Using registry defaults
for variables in perturbation
 DYNAMICS OPTION: Eulerian Mass Coordinate
    alloc_space_field: domain            1 ,             625600848  bytes
allocated
 WRF TILE   1 IS      1 IE     89 JS      1 JE     59
 WRF NUMBER OF TILES =   1
Set up observations (ob)

Using BUFR format observation input

PREPBUFR ob with quality marker <= 3 will be retained.

I attached the namelist.

I use gfortran and gcc compilers for building the wrfvar and the libraries.

Is there any clue please?
-- 
Mahally Kudsy
Weather Modification Technology Center
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From moudipascal at yahoo.fr  Fri Aug 19 06:52:08 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Fri, 19 Aug 2011 13:52:08 +0100 (BST)
Subject: [Wrf-users] Problem panneling WRF outputs and trmm data
Message-ID: <1313758328.78204.YahooMailNeo@web29014.mail.ird.yahoo.com>



Dear all,
I am having troubles using trmm data. In fact i want to pannel wrf outpouts and trmm data in the same figure.
I am having segmentation fault.
Would someone provides a script which deals with some king of job.
Attached is the script i used.

What are the steps to be followed when one need to pannel data with different resolution and subscripts?
Please help.

?

Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From bpolla02 at harris.com  Mon Aug 22 07:48:35 2011
From: bpolla02 at harris.com (Pollack, Bryan)
Date: Mon, 22 Aug 2011 13:48:35 +0000
Subject: [Wrf-users]  WRF 3.0 NMM Segmentation fault in wrf.exe
Message-ID: <BE73B150BD2F834A86B2ED9053748F882262F49A@MLBMXUS20.cs.myharris.net>

Hi,

Does anybody know how to solve this issue: http://mailman.ucar.edu/pipermail/wrf-users/2009/001096.html. I'm getting the same issue as he was, but nobody had responded.

Thanks,
Bryan Pollack
Software Engineer, Harris Corporation
321-309-7646



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From carlosromancascon at fis.ucm.es  Sat Aug 20 10:52:07 2011
From: carlosromancascon at fis.ucm.es (CARLOS ROMAN CASCON)
Date: Sat, 20 Aug 2011 18:52:07 +0200
Subject: [Wrf-users] choosing initial time conditions
Message-ID: <f64c95f927dfd.4e500257@ucm.es>

Hi, 

I am simulating fog events with ARW-WRF V3.3 and comparing with observations. The problem is that the model seems to be too sensitive to the choice of the initial day to start the simulation. For example, if I am interested on day 4, and I run the simulation beginning on 3, the results are very diferent if I choose the initial day on 2...  The differences can be of the order of 3 or 4?C, and It?s important for me because I would like to do a statistic comparing with  observations, and this choice of the initial day seems to be very important. Is this normal??

Thank you in advance

Carlos Rom?n Casc?n
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From mmkamal at uwaterloo.ca  Mon Aug 22 11:08:28 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Mon, 22 Aug 2011 13:08:28 -0400
Subject: [Wrf-users] Discrepancies between WPS 3.3 & WPS 3.2.1
Message-ID: <20110822130828.14855d568vpk5zwg@www.nexusmail.uwaterloo.ca>

Hi,

I was wondering whether any change took place in Vtable.NARR and  
Vtable.GFS when upgrading from WPS 3.2.1 to WPS 3.3. The difference is  
in the last two line of the above two Vtables. I look forward to  
hearing from you.


Thanks
Kamal







From moudipascal at yahoo.fr  Mon Aug 22 07:16:36 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Mon, 22 Aug 2011 14:16:36 +0100 (BST)
Subject: [Wrf-users] Tr : Problem panneling WRF outputs and trmm data
In-Reply-To: <1313758328.78204.YahooMailNeo@web29014.mail.ird.yahoo.com>
References: <1313758328.78204.YahooMailNeo@web29014.mail.ird.yahoo.com>
Message-ID: <1314018996.65223.YahooMailNeo@web29003.mail.ird.yahoo.com>



?
Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52

----- Mail transf?r? -----
De?: moudi pascal <moudipascal at yahoo.fr>
??: WRF DA <wrfhelp at ucar.edu>; WRF User's <wrf-users at ucar.edu>; "wrf_users at ucar.edu" <wrf_users at ucar.edu>
Envoy? le : Vendredi 19 Ao?t 2011 13h52
Objet?: Problem panneling WRF outputs and trmm data




Dear all,
I am having troubles using trmm data. In fact i want to pannel wrf outpouts and trmm data in the same figure.
I am having segmentation fault.
Would someone provides a script which deals with some king of job.
Attached is the script i used.

What are the steps to be followed when one need to pannel data with different resolution and subscripts?
Please help.
?
Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From mashfaq at ornl.gov  Wed Aug 24 08:28:17 2011
From: mashfaq at ornl.gov (Ashfaq, Moetasim)
Date: Wed, 24 Aug 2011 10:28:17 -0400
Subject: [Wrf-users] Postdoctoral Researcher in hydro-climate predictions
 and impact assessments
Message-ID: <695D6190-40FD-4D98-96D3-026C73FD83E1@ornl.gov>

Postdoctoral Researcher in hydro-climate predictions and impact assessments at Oak Ridge National Lab
The Computational Earth Sciences group of the Computer Science and Mathematics Division at Oak Ridge National Laboratory seeks to hire a Post Doctoral Researcher to participate in research on understanding the roles of natural and anthropogenic forcing in near-term decadal-scale regional hydro-climatic variability over continental United States and South Asia. In addition, the research will also focus on the projection of potential impacts of decadal-scale regional hydro-climatic variability on energy, water resources and associated critical infrastructures. This research will use a suite of Earth system models and statistical techniques to downscale predictions from a multi-model ensemble of IPCC-AR5 GCMs to an ultra-high horizontal resolution of 4 km over the United States and the South Asia.
The successful candidate will be expected to 1) develop and perform experiments with regional and hydrological models on Oak Ridge Leadership Computing Facility (OLCF) 2) present the research at national and international conferences, and 3) report results in peer reviewed journals, technical manuals, and conference proceedings.
This position requires a PhD in Atmospheric and Hydrological Sciences or a related field within the past five years from an accredited college or university. Candidate is expected to have a strong understanding of North American climate and/or South Asian monsoon system. Experience in the use and application of a regional climate model and/or a hydrological model, and ability to perform advanced data analysis on large datasets is required. Excellent interpersonal skills, oral and written communications skills, organizational skills, and strong personal motivation are necessary. Ability to work effectively and contribute to a dynamic, team environment is required. Ability to assimilate new concepts and adapt to a rapidly evolving scientific and computational environment is necessary. Experience with numerical methods, parallel algorithms, MPI, FORTRAN, C, C++, and parallel software development on large scale computational resources will be an advantage.
We anticipate it to be a two years position, dependent on continuing funding. Applications will be accepted until the position is filled.
Technical Questions: For more information about this position please contact Dr. Moetasim Ashfaq (mashfaq at ornl.gov<mailto:mashfaq at ornl.gov>). Please reference this position title in your correspondence.
Interested candidates should apply online: https://www3.orau.gov/ORNL_TOppS/Posting/Details/185
Please refer to the following link for the application requirements:
http://www.orau.org/ornl/postdocs/ornl-pd-pm/application.htm
This appointment is offered through the ORNL Postgraduate Research Participation Program and is administered by the Oak Ridge Institute for Science and Education (ORISE). The program is open to all qualified U.S. and non-U.S. citizens without regard to race, color, age, religion, sex, national origin, physical or mental disability, or status as a Vietnam-era veteran or disabled veteran.

From scott.rowe at globocean.fr  Wed Aug 24 09:22:55 2011
From: scott.rowe at globocean.fr (Scott)
Date: Wed, 24 Aug 2011 17:22:55 +0200
Subject: [Wrf-users] Unpredictable crashes - MPI/RSL/Nest related?
Message-ID: <4E55174F.9030306@globocean.fr>

Hello all,

I would like to know if others have come across this problem. The best I 
can do is give a general description because it is quite unpredictable. 
In point form:

- General Details -

o I am performing a simulation with one parent domain (@25km) and three 
child domains (@12.5km)
o I am able to run just the parent domain without problem on 2 CPUs with 
4 cores each, ie 8 threads using MPI for communications, in a single 
computer.
o I can run the parent domain on at least 30 odd cores without problem, 
using MPI over a network. --> no nests, no worries
o When I increase maxdom to include from one to three child domains, the 
simulations will work fine when run on a single core. --> no MPI, no worries
o As soon as I increase the number of cores, simulation success becomes 
less likely. --> nests + MPI = worries
o The strange thing is, when it performs correctly with say, two cores, 
I will increase this to three cores, WRF will crash. Upon returning to 
two cores, this simulation will no longer function, and this without 
touching any other configuration aspect! Success is highly unpredictable.
o When WRF crashes, it is most often in radiation routines, but 
sometimes in cumulus, this is also highly unpredictable.
o Successive runs always crash at the same timestep and in the same routine.
o Timestep values for the parent domain and child domains are very 
conservative, and are also shown to function well when run without MPI I 
will add
o Many combinations of physics and dynamics options have been trialled 
to no avail. I note again that the options chosen, when run without MPI, 
run fine.
o I have tried several configurations for the widths of relaxation zones 
for boundary conditions, a wider relaxation does seem to increase the 
chance of success, but this is hard to verify.
o No CFL warnings appear in the rsl log files, the crashes are brusque 
and take the form of a segmentation fault whilst treating a child 
domain, never in the parent domain.
o The only hint I have seen in output files is the TSK field becoming 
NaN over land inside the child domain. This does not occur 100% of the 
time however.

It would thus appear to be a MPI or compiler issue rather than WRF. This 
said, it is only the combination of nests AND MPI that causes problems, 
not one or the other alone. Could it be RSL?

Does anyone have any debugging ideas, even just general approaches to 
try and find the culprit?
Any MPI parameters that could be ajusted?


- Technical Details -

o Using OpenMPI 1.4.3
o Aiming for WRFV3.3 use but have tried v3.2.1 also
o EM/ARW core
o Compiler is ifort and icc v10.1
o Have tried compiling with -O0, -O2 and -O3 with thourough cleaning 
each time
o GFS boundary conditions, WPSV3.3. No obvious problems to report here. 
geo*.nc and met_em* appear fine.

Thank you for any help you may be able to give.


From ulasim at chemistry.uoc.gr  Wed Aug 24 04:56:57 2011
From: ulasim at chemistry.uoc.gr (Ulas IM)
Date: Wed, 24 Aug 2011 13:56:57 +0300
Subject: [Wrf-users] plotting sigma lalyers with rip
Message-ID: <CAE7P9+=fJGQjGiWGT8K-w0eR=3TmiGLDxVPuz9FFdiwUsEw65g@mail.gmail.com>

Dear users

I am trying to plot the terrain following sigma layers on a cross
section from a wrf output. Is there a default way to accomplish this?

thank you

Ulas IM, PhD
University of Crete
Department of Chemistry
Environmental Chemical Processes Laboratory (ECPL)
Voutes, Heraklion
Crete, Greece
E - mail: ulasim at chemistry.uoc.gr
Web: http://ulas-im.tr.gg
Phone: (+30) 2810 545162
Fax: (+30) 2810 545001

From bbrashers at Environcorp.com  Wed Aug 24 18:09:27 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Wed, 24 Aug 2011 17:09:27 -0700
Subject: [Wrf-users] OBS nudging
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF308520752C51E@irvine01.irvine.environ.local>

I have a few questions about using OBS nudging in WRF v3.3.  I'm using
the 12km NAM data, which comes in 6 hour intervals.  WPS ran fine, and I
have met_em files every 6 hours.

 

I have processed MADIS data to little_r format, and named the files
OBS:YYYY-MM-DD_HH.  Each file contains 6 hours of data, which I've
confirmed via grep (e.g. "grep 200801 OBS:2008-01-29_18 | cut -c 327-336
| sort | uniq" shows the right time-stamps).

 

1. OBSGRID.EXE creates OBS_DOMAIN101, OBSDOMAIN102, etc.  But each file
contains only ONE hour's data (the analysis hour +/- 30 minutes).  The
OBS data for the next 5 hours is not output.  How can I get OBSGRID.EXE
to create OBS_DOMAIN1* files that contain ALL the available data?  I
want to nudge every hour, not every 6 hours.

 

2. The most recent notes in the WRF User's Guide
<http://www.mmm.ucar.edu/wrf/users/wrfv3.1/How_to_run_obs_fdda.html>
make no mention having to concatenate the OBS_DOMAIN1* output from
OBSGRID.EXE to OBS_DOMAIN101, but the tutorial notes
<http://www.mmm.ucar.edu/wrf/OnLineTutorial/Class/cases/obs_nudging1.php
>  do say so.  Which is correct?  Will WRF not read OBS_DOMAIN102,
OBS_DOMAIN103, etc.?

 

3. If I want to nudge every hour, do I set auxinput11_interval_m = 60 in
WRF's namelist?  Or is that supposed to match OBSGRID's record1 interval
?

 

4. If I want to keep nudging till the very end of my simulation, can I
set auxinput11_end_h = 99999?  

 

The meaning of these two values is pretty unclear in the
README.namelist, README.obs_fdda, as well as the WRF User's Guide and
tutorial notes.  If anyone can shed some light, I'd be most
appreciative.

 

Thanks,

 

Bart

 



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From Glenn.Creighton at offutt.af.mil  Thu Aug 25 13:57:28 2011
From: Glenn.Creighton at offutt.af.mil (Creighton, Glenn A Civ USAF AFWA 16 WS/WXN)
Date: Thu, 25 Aug 2011 14:57:28 -0500
Subject: [Wrf-users] Unpredictable crashes - MPI/RSL/Nest related?
	(Scott)
In-Reply-To: <mailman.9.1314295203.14392.wrf-users@ucar.edu>
References: <mailman.9.1314295203.14392.wrf-users@ucar.edu>
Message-ID: <201108251937.p7PJaob3037049@sgbp-fwl-001.offutt.af.mil>

Scott,

I have a similar problem with version 3.3, but not version 3.2.  It may be a related issue to that which you are experiencing.  WRF will either seg fault somewhere in a call to alloc_space_field, or collect_on_comm, debugging shows me that in these cases its dying in the MPI code ( calling libmpi.so.0 -> libopen-pal.so.0 -> mca_btl_openib.so ).  It seems to die in a different place every time.  Sometimes it will just hang while creating the first wrfout file for d02.  It dies more frequently with nested runs.  Running openmpi 1.4.2.

I can run it 5 times and it will die 4 different ways.
1. module_comm_dm.f90:812 -> c_code.c:627 -> libmpi.so.0:?? -> libopen-pal.so.0:?? -> mca_btl_openib.so:?? libmlx4-rdav2.so:??

2. module_comm_nesting_dm:11793 -> c_code.c:627 -> libmpi.so.0:?? -> libopen-pal.so.0:?? -> mca_btl_openib.so:?? libmlx4-rdav2.so:?? -> libpthread.so.0:??

3. Hung writing wrfout_d02

4. mediation_integrate.f90:234 -> wrf_ext_read_field.f90:130 -> module_io.f90:14873 -> module_io.f90:15043 -> module_io.f90:16177 ... -> ... -> libpthread.so.0:??

I'm trying to work with the folks at ncar on this right now. It's a weird bug that seems very machine/compiler dependent (I'm running this on a Linux with the ifort/icc also.  Same code works just fine on our AIX and another Linux box we have here.  Very strange bug.
Glenn


-----Original Message-----
From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of wrf-users-request at ucar.edu
Sent: Thursday, August 25, 2011 1:00 PM
To: wrf-users at ucar.edu
Subject: Wrf-users Digest, Vol 84, Issue 14

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Today's Topics:

   1. Postdoctoral Researcher in hydro-climate predictions and
      impact assessments (Ashfaq, Moetasim)
   2. Unpredictable crashes - MPI/RSL/Nest related? (Scott)
   3. plotting sigma lalyers with rip (Ulas IM)


----------------------------------------------------------------------

Message: 1
Date: Wed, 24 Aug 2011 10:28:17 -0400
From: "Ashfaq, Moetasim" <mashfaq at ornl.gov>
Subject: [Wrf-users] Postdoctoral Researcher in hydro-climate
	predictions and impact assessments
To: "wrf-users at ucar.edu" <wrf-users at ucar.edu>
Message-ID: <695D6190-40FD-4D98-96D3-026C73FD83E1 at ornl.gov>
Content-Type: text/plain; charset=us-ascii

Postdoctoral Researcher in hydro-climate predictions and impact assessments at Oak Ridge National Lab
The Computational Earth Sciences group of the Computer Science and Mathematics Division at Oak Ridge National Laboratory seeks to hire a Post Doctoral Researcher to participate in research on understanding the roles of natural and anthropogenic forcing in near-term decadal-scale regional hydro-climatic variability over continental United States and South Asia. In addition, the research will also focus on the projection of potential impacts of decadal-scale regional hydro-climatic variability on energy, water resources and associated critical infrastructures. This research will use a suite of Earth system models and statistical techniques to downscale predictions from a multi-model ensemble of IPCC-AR5 GCMs to an ultra-high horizontal resolution of 4 km over the United States and the South Asia.
The successful candidate will be expected to 1) develop and perform experiments with regional and hydrological models on Oak Ridge Leadership Computing Facility (OLCF) 2) present the research at national and international conferences, and 3) report results in peer reviewed journals, technical manuals, and conference proceedings.
This position requires a PhD in Atmospheric and Hydrological Sciences or a related field within the past five years from an accredited college or university. Candidate is expected to have a strong understanding of North American climate and/or South Asian monsoon system. Experience in the use and application of a regional climate model and/or a hydrological model, and ability to perform advanced data analysis on large datasets is required. Excellent interpersonal skills, oral and written communications skills, organizational skills, and strong personal motivation are necessary. Ability to work effectively and contribute to a dynamic, team environment is required. Ability to assimilate new concepts and adapt to a rapidly evolving scientific and computational environment is necessary. Experience with numerical methods, parallel algorithms, MPI, FORTRAN, C, C++, and parallel software development on large scale computational resources will be an advantage.
We anticipate it to be a two years position, dependent on continuing funding. Applications will be accepted until the position is filled.
Technical Questions: For more information about this position please contact Dr. Moetasim Ashfaq (mashfaq at ornl.gov<mailto:mashfaq at ornl.gov>). Please reference this position title in your correspondence.
Interested candidates should apply online: https://www3.orau.gov/ORNL_TOppS/Posting/Details/185
Please refer to the following link for the application requirements:
http://www.orau.org/ornl/postdocs/ornl-pd-pm/application.htm
This appointment is offered through the ORNL Postgraduate Research Participation Program and is administered by the Oak Ridge Institute for Science and Education (ORISE). The program is open to all qualified U.S. and non-U.S. citizens without regard to race, color, age, religion, sex, national origin, physical or mental disability, or status as a Vietnam-era veteran or disabled veteran.


------------------------------

Message: 2
Date: Wed, 24 Aug 2011 17:22:55 +0200
From: Scott <scott.rowe at globocean.fr>
Subject: [Wrf-users] Unpredictable crashes - MPI/RSL/Nest related?
To: wrf-users at ucar.edu
Message-ID: <4E55174F.9030306 at globocean.fr>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Hello all,

I would like to know if others have come across this problem. The best I 
can do is give a general description because it is quite unpredictable. 
In point form:

- General Details -

o I am performing a simulation with one parent domain (@25km) and three 
child domains (@12.5km)
o I am able to run just the parent domain without problem on 2 CPUs with 
4 cores each, ie 8 threads using MPI for communications, in a single 
computer.
o I can run the parent domain on at least 30 odd cores without problem, 
using MPI over a network. --> no nests, no worries
o When I increase maxdom to include from one to three child domains, the 
simulations will work fine when run on a single core. --> no MPI, no worries
o As soon as I increase the number of cores, simulation success becomes 
less likely. --> nests + MPI = worries
o The strange thing is, when it performs correctly with say, two cores, 
I will increase this to three cores, WRF will crash. Upon returning to 
two cores, this simulation will no longer function, and this without 
touching any other configuration aspect! Success is highly unpredictable.
o When WRF crashes, it is most often in radiation routines, but 
sometimes in cumulus, this is also highly unpredictable.
o Successive runs always crash at the same timestep and in the same routine.
o Timestep values for the parent domain and child domains are very 
conservative, and are also shown to function well when run without MPI I 
will add
o Many combinations of physics and dynamics options have been trialled 
to no avail. I note again that the options chosen, when run without MPI, 
run fine.
o I have tried several configurations for the widths of relaxation zones 
for boundary conditions, a wider relaxation does seem to increase the 
chance of success, but this is hard to verify.
o No CFL warnings appear in the rsl log files, the crashes are brusque 
and take the form of a segmentation fault whilst treating a child 
domain, never in the parent domain.
o The only hint I have seen in output files is the TSK field becoming 
NaN over land inside the child domain. This does not occur 100% of the 
time however.

It would thus appear to be a MPI or compiler issue rather than WRF. This 
said, it is only the combination of nests AND MPI that causes problems, 
not one or the other alone. Could it be RSL?

Does anyone have any debugging ideas, even just general approaches to 
try and find the culprit?
Any MPI parameters that could be ajusted?


- Technical Details -

o Using OpenMPI 1.4.3
o Aiming for WRFV3.3 use but have tried v3.2.1 also
o EM/ARW core
o Compiler is ifort and icc v10.1
o Have tried compiling with -O0, -O2 and -O3 with thourough cleaning 
each time
o GFS boundary conditions, WPSV3.3. No obvious problems to report here. 
geo*.nc and met_em* appear fine.

Thank you for any help you may be able to give.



------------------------------

Message: 3
Date: Wed, 24 Aug 2011 13:56:57 +0300
From: Ulas IM <ulasim at chemistry.uoc.gr>
Subject: [Wrf-users] plotting sigma lalyers with rip
To: wrf-users at ucar.edu
Message-ID:
	<CAE7P9+=fJGQjGiWGT8K-w0eR=3TmiGLDxVPuz9FFdiwUsEw65g at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1

Dear users

I am trying to plot the terrain following sigma layers on a cross
section from a wrf output. Is there a default way to accomplish this?

thank you

Ulas IM, PhD
University of Crete
Department of Chemistry
Environmental Chemical Processes Laboratory (ECPL)
Voutes, Heraklion
Crete, Greece
E - mail: ulasim at chemistry.uoc.gr
Web: http://ulas-im.tr.gg
Phone: (+30) 2810 545162
Fax: (+30) 2810 545001


------------------------------

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu
http://mailman.ucar.edu/mailman/listinfo/wrf-users


End of Wrf-users Digest, Vol 84, Issue 14
*****************************************

From bbrashers at Environcorp.com  Fri Aug 26 12:18:24 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Fri, 26 Aug 2011 11:18:24 -0700
Subject: [Wrf-users] Unpredictable crashes - MPI/RSL/Nest related?(Scott)
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF308520752C7B9@irvine01.irvine.environ.local>

I have been running _almost_ the same setup as you, just using 

- GFS (and NAM 12km) GRIB files for inits
- WRFv3.3
- Openmpi-1.4.3
- PGI 10.6-0
- CentOS 5.x (2.6.18-53.1.14 kernel) on a Rocks 5.0 system
- gE interconnect.

I've not seen any similar problems.  FWIW, here's how I compiled stuff:

# grep -A11 DMPARALLEL /usr/local/src/wrf/WRFV3.3-openmpi/configure.wrf
DMPARALLEL      =        1
OMPCPP          =       # -D_OPENMP
OMP             =       # -mp -Minfo=mp -Mrecursive
OMPCC           =       # -mp
SFC             =       pgf90
SCC             =       gcc
CCOMP           =       pgcc
DM_FC           =       /usr/local/src/openmpi-1.4.3/bin/mpif90 
DM_CC           =       /usr/local/src/openmpi-1.4.3/bin/mpicc
-DMPI2_SUPPORT
FC              =        $(DM_FC)
CC              =       $(DM_CC) -DFSEEKO64_OK 
LD              =       $(FC)

# cat /usr/local/src/openmpi-1.4.3/my.configure
#!/bin/tcsh -f
setenv CC pgcc
setenv CFLAGS ''
setenv CXX pgCC
setenv CXXFLAGS ''
setenv FC pgf90
setenv FCFLAGS '-fast'
setenv FFLAGS '-O2'
setenv F90 pgf90
./configure --prefix=/usr/local/src/openmpi-1.4.3 --with-tm=/opt/torque
--disable-ipv6 >&! my.configure.out
make all >&! make.out
make install >&! make.install.out

Maybe there's something there that is different, that will help.

Bart

> -----Original Message-----
> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu]
On
> Behalf Of Creighton, Glenn A Civ USAF AFWA 16 WS/WXN
> Sent: Thursday, August 25, 2011 12:57 PM
> To: wrf-users at ucar.edu
> Subject: Re: [Wrf-users] Unpredictable crashes - MPI/RSL/Nest
> related?(Scott)
> 
> Scott,
> 
> I have a similar problem with version 3.3, but not version 3.2.  It
may be a
> related issue to that which you are experiencing.  WRF will either seg
fault
> somewhere in a call to alloc_space_field, or collect_on_comm,
debugging
> shows me that in these cases its dying in the MPI code ( calling
libmpi.so.0
> -> libopen-pal.so.0 -> mca_btl_openib.so ).  It seems to die in a
different
> place every time.  Sometimes it will just hang while creating the
first
> wrfout file for d02.  It dies more frequently with nested runs.
Running
> openmpi 1.4.2.
> 
> I can run it 5 times and it will die 4 different ways.
> 1. module_comm_dm.f90:812 -> c_code.c:627 -> libmpi.so.0:?? ->
libopen-
> pal.so.0:?? -> mca_btl_openib.so:?? libmlx4-rdav2.so:??
> 
> 2. module_comm_nesting_dm:11793 -> c_code.c:627 -> libmpi.so.0:?? ->
> libopen-pal.so.0:?? -> mca_btl_openib.so:?? libmlx4-rdav2.so:?? ->
> libpthread.so.0:??
> 
> 3. Hung writing wrfout_d02
> 
> 4. mediation_integrate.f90:234 -> wrf_ext_read_field.f90:130 ->
> module_io.f90:14873 -> module_io.f90:15043 -> module_io.f90:16177 ...
-> ...
> -> libpthread.so.0:??
> 
> I'm trying to work with the folks at ncar on this right now. It's a
weird
> bug that seems very machine/compiler dependent (I'm running this on a
Linux
> with the ifort/icc also.  Same code works just fine on our AIX and
another
> Linux box we have here.  Very strange bug.
> Glenn
> 
> 
> -----Original Message-----
> Date: Wed, 24 Aug 2011 17:22:55 +0200
> From: Scott <scott.rowe at globocean.fr>
> Subject: [Wrf-users] Unpredictable crashes - MPI/RSL/Nest related?
> To: wrf-users at ucar.edu
> Message-ID: <4E55174F.9030306 at globocean.fr>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> Hello all,
> 
> I would like to know if others have come across this problem. The best
I
> can do is give a general description because it is quite
unpredictable.
> In point form:
> 
> - General Details -
> 
> o I am performing a simulation with one parent domain (@25km) and
three
> child domains (@12.5km)
> o I am able to run just the parent domain without problem on 2 CPUs
with
> 4 cores each, ie 8 threads using MPI for communications, in a single
> computer.
> o I can run the parent domain on at least 30 odd cores without
problem,
> using MPI over a network. --> no nests, no worries
> o When I increase maxdom to include from one to three child domains,
the
> simulations will work fine when run on a single core. --> no MPI, no
worries
> o As soon as I increase the number of cores, simulation success
becomes
> less likely. --> nests + MPI = worries
> o The strange thing is, when it performs correctly with say, two
cores,
> I will increase this to three cores, WRF will crash. Upon returning to
> two cores, this simulation will no longer function, and this without
> touching any other configuration aspect! Success is highly
unpredictable.
> o When WRF crashes, it is most often in radiation routines, but
> sometimes in cumulus, this is also highly unpredictable.
> o Successive runs always crash at the same timestep and in the same
routine.
> o Timestep values for the parent domain and child domains are very
> conservative, and are also shown to function well when run without MPI
I
> will add
> o Many combinations of physics and dynamics options have been trialled
> to no avail. I note again that the options chosen, when run without
MPI,
> run fine.
> o I have tried several configurations for the widths of relaxation
zones
> for boundary conditions, a wider relaxation does seem to increase the
> chance of success, but this is hard to verify.
> o No CFL warnings appear in the rsl log files, the crashes are brusque
> and take the form of a segmentation fault whilst treating a child
> domain, never in the parent domain.
> o The only hint I have seen in output files is the TSK field becoming
> NaN over land inside the child domain. This does not occur 100% of the
> time however.
> 
> It would thus appear to be a MPI or compiler issue rather than WRF.
This
> said, it is only the combination of nests AND MPI that causes
problems,
> not one or the other alone. Could it be RSL?
> 
> Does anyone have any debugging ideas, even just general approaches to
> try and find the culprit?
> Any MPI parameters that could be ajusted?
> 
> 
> - Technical Details -
> 
> o Using OpenMPI 1.4.3
> o Aiming for WRFV3.3 use but have tried v3.2.1 also
> o EM/ARW core
> o Compiler is ifort and icc v10.1
> o Have tried compiling with -O0, -O2 and -O3 with thourough cleaning
> each time
> o GFS boundary conditions, WPSV3.3. No obvious problems to report
here.
> geo*.nc and met_em* appear fine.
> 
> Thank you for any help you may be able to give.


This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.

From bbrashers at Environcorp.com  Fri Aug 26 12:38:07 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Fri, 26 Aug 2011 11:38:07 -0700
Subject: [Wrf-users] OBS nudging
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF308520752C7C9@irvine01.irvine.environ.local>

I'm replying to my own question here, so others can find the solution.
Solved.  Tags for searching: hourly OBS nudging, OBSGRID, WRF 3.3.
Solution first, statement of the problem below.

 

SOLUTION:

 

In namelist.wps, set (among other settings):

 

&share

interval_seconds = 21600  

 

to match your input GRIB data (every 6 hours for my data).

 

Make your obs_filename (OBS:*, little_r format) files each contain only
1 hour of data.  This conflicts somewhat with the statement in the WRF
v3.3 Users Guide
<http://www.mmm.ucar.edu/wrf/users/docs/user_guide_V3/users_guide_chap7.
htm#namelist> , Chapter 7, under OBSGRID Namelist: "Ideally there should
be an obs_filename for each time period for which an objective analysis
is desired."  I suppose I should interpret "objective analysis" as
either the 3D objective analysis or the 2D surface analysis.

 

I believe it should say that there should be an obs_filename for each
intf4d (surface analysis) period.  This is the key.  

 

In namelist.obsgrid, set (among other settings):

 

&record1

interval =  21600

&record2

obs_filename = path/to/OBS

&record7

f4d      = .TRUE.

intf4d   =  3600

 

This will produce OBS_DOMAIN101 with 1 hour of data (+/- 30 minutes from
the start time); OBS_DOMAIN102 with 5 hours of data; OBS_DOMAIN103 with
1 hour of data (+/- 30 minutes from start + interval [6 hours]); etc.

 

You must concatenate all the OBS_DOMAIN1?? files into a single
OBS_DOMAIN101 file in the WRF run directory.  The Users Guide does not
explicitly state this, though the latest tutorial does.

 

auxinput11_interval_m is the minimum time interval you would like to
check for new observations.  If you want to nudge every hour, set this
to 3600.   Note that this is listed in test/em_real/README.obs_fdda as
auxinput11_interval_s = 180, (180 seconds) which I believe is a typo.
They problem meant 180 minutes (3 hours).

 

auxinput11_end_h is the time at which you want to WRF stop reading
OBS_DOMAIN101.  

 

PROBLEM:

 

Following the WRF v3.3 Users Guide, Chapter 7, my obs_filename (OBS:*,
little_r format) files each contained 6 hours of data (to match interval
= 21600).  

 

At each intf4d time interval, OBSGRID opens an obs_filename file with
the current time-stamp.  It DOES NOT check for the existence of the file
before it opens the file.  

 

So if your obs_filename (little_r) files each contain 6 hours of data,
then at hour +1 it opens (and thus creates) a file with that time-stamp.
Of course it's empty (newly created) so no data are read, and no data
are output to the OBS_DOMAIN* file for that hour.  If you started with
obs_filename files like this:

 

-rw-rw-rw- 1 username 650M Aug 25 10:02 OBS:2008-01-29_12

-rw-rw-rw- 1 username 630M Aug 25 10:10 OBS:2008-01-29_18

-rw-rw-rw- 1 username 650M Aug 25 10:16 OBS:2008-01-30_00

 

Then after OBSGRID.EXE had run, you'll have files like this:

 

-rw-rw-rw- 1 username 650M Aug 25 10:02 OBS:2008-01-29_12

-rw-rw-rw- 1 username    0 Aug 25 10:03 OBS:2008-01-29_13

-rw-rw-rw- 1 username    0 Aug 25 10:05 OBS:2008-01-29_14

-rw-rw-rw- 1 username    0 Aug 25 10:06 OBS:2008-01-29_15

-rw-rw-rw- 1 username    0 Aug 25 10:07 OBS:2008-01-29_16

-rw-rw-rw- 1 username    0 Aug 25 10:08 OBS:2008-01-29_17

-rw-rw-rw- 1 username 630M Aug 25 10:10 OBS:2008-01-29_18

-rw-rw-rw- 1 username    0 Aug 25 10:10 OBS:2008-01-29_19

-rw-rw-rw- 1 username    0 Aug 25 10:12 OBS:2008-01-29_20

-rw-rw-rw- 1 username    0 Aug 25 10:13 OBS:2008-01-29_21

-rw-rw-rw- 1 username    0 Aug 25 10:14 OBS:2008-01-29_22

-rw-rw-rw- 1 username    0 Aug 25 10:15 OBS:2008-01-29_23

-rw-rw-rw- 1 username 650M Aug 25 10:16 OBS:2008-01-30_00

 

and your OBS_DOMAIN1?? files will contain only data +/- 30 minutes from
each interval (each 6 hours).  

 

Bart

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Bart Brashers
Sent: Wednesday, August 24, 2011 5:09 PM
To: wrf-users at ucar.edu
Cc: wrfhelp at ucar.edu
Subject: [Wrf-users] OBS nudging

 

I have a few questions about using OBS nudging in WRF v3.3.  I'm using
the 12km NAM data, which comes in 6 hour intervals.  WPS ran fine, and I
have met_em files every 6 hours.

 

I have processed MADIS data to little_r format, and named the files
OBS:YYYY-MM-DD_HH.  Each file contains 6 hours of data, which I've
confirmed via grep (e.g. "grep 200801 OBS:2008-01-29_18 | cut -c 327-336
| sort | uniq" shows the right time-stamps).

 

1. OBSGRID.EXE creates OBS_DOMAIN101, OBSDOMAIN102, etc.  But each file
contains only ONE hour's data (the analysis hour +/- 30 minutes).  The
OBS data for the next 5 hours is not output.  How can I get OBSGRID.EXE
to create OBS_DOMAIN1* files that contain ALL the available data?  I
want to nudge every hour, not every 6 hours.

 

2. The most recent notes in the WRF User's Guide
<http://www.mmm.ucar.edu/wrf/users/wrfv3.1/How_to_run_obs_fdda.html>
make no mention having to concatenate the OBS_DOMAIN1* output from
OBSGRID.EXE to OBS_DOMAIN101, but the tutorial notes
<http://www.mmm.ucar.edu/wrf/OnLineTutorial/Class/cases/obs_nudging1.php
>  do say so.  Which is correct?  Will WRF not read OBS_DOMAIN102,
OBS_DOMAIN103, etc.?

 

3. If I want to nudge every hour, do I set auxinput11_interval_m = 60 in
WRF's namelist?  Or is that supposed to match OBSGRID's record1 interval
?

 

4. If I want to keep nudging till the very end of my simulation, can I
set auxinput11_end_h = 99999?  

 

The meaning of these two values is pretty unclear in the
README.namelist, README.obs_fdda, as well as the WRF User's Guide and
tutorial notes.  If anyone can shed some light, I'd be most
appreciative.

 

Thanks,

 

Bart

 

________________________________

This message contains information that may be confidential, privileged
or otherwise protected by law from disclosure. It is intended for the
exclusive use of the Addressee(s). Unless you are the addressee or
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or disclose to anyone the message or any information contained within.
If you have received this message in error, please contact the sender by
electronic reply to email at environcorp.com and immediately delete all
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This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From jagan at tnau.ac.in  Thu Sep  1 23:47:58 2011
From: jagan at tnau.ac.in (jagan TNAU)
Date: Fri, 2 Sep 2011 11:17:58 +0530
Subject: [Wrf-users] climate run output
Message-ID: <CABpuO0h60=0Ws76GFMDqy+uJdt0-N_+dW0CHk-pZrUuXaqLeNg@mail.gmail.com>

Dear Users,

I am trying to use CAM3 data for climate runs starting from 2000 to 2099. I
need only the following daily output for running the crop simulation model.

Maximum Temperature
Minimum Temperature
Solar Radiation (Total)
Rainfall
Relative Humidity (Maximum & Minimum)
Wind speed (km/day)

As there is no output like this on daily basis what is the possibility for
getting this output.

-- 
With regards

Dr.R.Jagannathan
Professor of Agronomy,
Department of Agronomy
Tamil Nadu Agricultural University,
Coimbatore - 641 003 India

PHONE:  Mob: +91 94438 89891

DO NOT PRINT THIS E-MAIL UNLESS NECESSARY. THE ENVIRONMENT CONCERNS US ALL.
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From anottrot at ucsd.edu  Tue Aug 30 11:59:41 2011
From: anottrot at ucsd.edu (Anders A Nottrott)
Date: Tue, 30 Aug 2011 10:59:41 -0700
Subject: [Wrf-users] More information about WRF Ideal test cases
Message-ID: <000201cc673e$97d73b00$c785b100$@ucsd.edu>

Hello All,

 

I wondered if anyone knows where I can obtain detailed information regarding
the WRF ideal test simulations?  I have read the information on pg. 4-3 of
the WRF V3 users guide, but there are only a few basic points relating to
each simulation.  A more detailed description would be helpful/useful.

 

Kind Regards,

 

Anders Nottrott

 

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From anottrot at ucsd.edu  Thu Sep  1 14:13:05 2011
From: anottrot at ucsd.edu (Anders A Nottrott)
Date: Thu, 1 Sep 2011 13:13:05 -0700
Subject: [Wrf-users] TKE and velocity perturbation output?
Message-ID: <00a901cc68e3$8f404300$adc0c900$@ucsd.edu>

Hello All,

 

I am running some idealized LES cases for a convective ABL over a flat
surface.  I was wondering if it is possible to get the resolved scale TKE as
an output variable.  It seems to me that using km_opt=2 in the 'namelist'
should give the resolved TKE as an output, but I do not find it in my netcdf
output file.  I found the following in the ARW description document:

"Optionally, turbulent kinetic energy and any number of scalars such as
water vapor mixing ratio, rain/snow mixing ratio, cloud water/ice mixing
ratio, and chemical species and tracers."

Maybe this is only referring to the output obtained when using a PBL scheme?

Also is it possible to get information about the velocity perturbation as an
output (e.g. u', v', w' or maybe the second moment)? I believe that the U,
V, W output variables are the full velocities.  If I have to compute TKE and
velocity fluctuation in post processing then I will have a lot of output
data from the WRF run and post processing will be memory intensive.

 

Regards,

 

Anders Nottrott

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From dbh409 at ku.edu  Thu Sep  1 16:22:47 2011
From: dbh409 at ku.edu (Huber, David)
Date: Thu, 1 Sep 2011 22:22:47 +0000
Subject: [Wrf-users] WRF Seasonal Variations
Message-ID: <A644457BC398E24787146788656183260820F0@EXCH10-MBX-02.home.ku.edu>

Hello,

If I were to perform a 1-year long simulation in WRF, would how often would it change the land cover parameters?  I noticed in VEGPARM.TBL that there are only winter and summer values, so does this mean that there is a sudden change in vegetation parameters once or possibly twice in a year-long simulation, that the vegetation parameters change regularly throughout the simulation, or that they stay the same as the initial vegetation parameters?

Thanks,

David


From agmunoz at cmc.org.ve  Fri Sep  2 12:07:48 2011
From: agmunoz at cmc.org.ve (=?iso-8859-1?Q?=22=C1ngel_G=2E_Mu=F1oz=22?=)
Date: Fri, 2 Sep 2011 14:07:48 -0400
Subject: [Wrf-users] Wrf-users Digest, Vol 85, Issue 1
In-Reply-To: <mailman.9.1314986403.15729.wrf-users@ucar.edu>
References: <mailman.9.1314986403.15729.wrf-users@ucar.edu>
Message-ID: <A1F25E22-B6D5-4072-B98D-B5F24F4F4AC6@cmc.org.ve>

Dear Dr Jagannathan

The Andean Observatory (http://journals.ametsoc.org/doi/abs/10.1175/2010BAMS2958.1) has been running for a several years now the WRF using CAM3 output as input. If you are interested we can share the CAM3 output in the "intermediate format" needed by WPS so you can run some test. If this is successful and you are still interested, we can give you access to all our data.

Best

?ngel 
El 02/09/2011, a las 14:00, wrf-users-request at ucar.edu escribi?:

> 
> 
> Message: 1
> Date: Fri, 2 Sep 2011 11:17:58 +0530
> From: jagan TNAU <jagan at tnau.ac.in>
> Subject: [Wrf-users] climate run output
> To: wrf-users at ucar.edu
> Message-ID:
> 	<CABpuO0h60=0Ws76GFMDqy+uJdt0-N_+dW0CHk-pZrUuXaqLeNg at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> Dear Users,
> 
> I am trying to use CAM3 data for climate runs starting from 2000 to 2099. I
> need only the following daily output for running the crop simulation model.
> 
> Maximum Temperature
> Minimum Temperature
> Solar Radiation (Total)
> Rainfall
> Relative Humidity (Maximum & Minimum)
> Wind speed (km/day)
> 
> As there is no output like this on daily basis what is the possibility for
> getting this output.
> 
> -- 
> With regards
> 
> Dr.R.Jagannathan
> Professor of Agronomy,
> Department of Agronomy
> Tamil Nadu Agricultural University,
> Coimbatore - 641 003 India
> 
> PHONE:  Mob: +91 94438 89891
> 
> DO NOT PRINT THIS E-MAIL UNLESS NECESSARY. THE ENVIRONMENT CONCERNS US ALL.
> -------------- next part --------------
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Prof. ?ngel G. Mu?oz S.
Coordinador Eje Geociencias
Centro de Modelado Cient?fico (CMC)
La Universidad del Zulia
VENEZUELA
http://cmc.org.ve
Telf +58-261-412-6008







From ecarlste at gmail.com  Fri Sep  2 14:02:26 2011
From: ecarlste at gmail.com (Erik Carlsten)
Date: Fri, 2 Sep 2011 14:02:26 -0600
Subject: [Wrf-users] Which QVAPOR values correspond to which Total
	Geopotential Height?
Message-ID: <CAC6Z7mBMzKUoOg5A_8DV_6_0DdZPs5sYgeJ6HVCEjChoP84-1w@mail.gmail.com>

Hi All,

This is my first time using this mailing list so hopefully I give you the
information you need to answer the question I have, providing you have the
time to help.

Currently I am running WRF and producing output just fine. The variables I
am primarily interested in looking at right now are PH, PHB, and QVAPOR. I
might also need Q2, but I am unsure yet due to my lack of overall
understanding of the correlation between the staggered grid for elevation (
( PH + PHB ) / 9.81 ) and the non-staggered grid of QVAPOR.

What I am trying to figure out is what the water vapor mixing ratio is at a
given elevation. I am pulling the data straight out of the NetCDF files
using C and Matlab, so I won't be using NCL at all for this.

Can anyone explain with some detail on how I would determine which vertical
layer of QVAPOR correlates to which vertical layer of "total geopotential
height in meters"?

Thanks very much for your time,
Erik

-- 
Erik S. Carlsten              Cell: (406) 570-1547
EPS 116                        Lab: (406) 994-6145
Montana State University
Bozeman, MT 59717

---------------------------------------------------------------
There is a single light of science, and to
brighten it anywhere is to brighten it
everywhere.
          - Isaac Asimov
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From eric.kemp at nasa.gov  Fri Sep  2 11:17:50 2011
From: eric.kemp at nasa.gov (Kemp, Eric M. (GSFC-610.3)[NORTHROP GRUMMAN])
Date: Fri, 2 Sep 2011 12:17:50 -0500
Subject: [Wrf-users] Minor bug found in Grell-Devenyi cumulus scheme (WRF
 3.2.1 and WRF 3.3)
Message-ID: <CA8687FE.4578%Eric.Kemp@nasa.gov>


All:

I?ve found a minor bug in the Grell-Devenyi cumulus scheme while running a test domain including the Himalayas and with run time checking turned on.  The relevant code is in lines 261-276 of module_cu_gd.F:

      do k=  kts+1,ktf-1
      DO I = its,itf
         if((p2d(i,1)-p2d(i,k)).gt.150.and.p2d(i,k).gt.300)then
            dp=-.5*(p2d(i,k+1)-p2d(i,k-1))
            umean(i)=umean(i)+us(i,k)*dp
            vmean(i)=vmean(i)+vs(i,k)*dp
            pmean(i)=pmean(i)+dp
         endif
      enddo
      enddo
      DO I = its,itf
         umean(i)=umean(i)/pmean(i)
         vmean(i)=vmean(i)/pmean(i)
         direction(i)=(atan2(umean(i),vmean(i))+3.1415926)*57.29578
         if(direction(i).gt.360.)direction(i)=direction(i)-360.
      ENDDO


p2d is the 2D slab of pressure in mb.  Pmean is an average pressure thickness of model levels below the 300 mb level and 150 mb above the model level closest to the ground.  Pmean is initialized to zero earlier in the routine.  In my test run, I encountered a situation in the Himalayas where the pmean value is not updated, triggering a division-by-zero error in the umean, vmean, and direction calculations.  My suggested bug fix is:

      DO I = its,itf
         !EMK Bug fix
         if (pmean(i) > 0) then
            umean(i)=umean(i)/pmean(i)
            vmean(i)=vmean(i)/pmean(i)
            direction(i)=(atan2(umean(i),vmean(i))+3.1415926)*57.29578
            if(direction(i).gt.360.)direction(i)=direction(i)-360.
         end if
         !EMK END Bug fix
      ENDDO

Note that umean and vmean are only used to calculate direction, and direction is initialized as zero.  It does not appear that this direction variable is actually used anywhere else in the code (code fragments that did use it are all commented out), so this is a minor bug and bug fix that shouldn?t change simulation results.  Nonetheless I suggest fixing it, since it can interfere with run-time checks for other errors (as it did in my test case!) and it could slow down the simulation by producing NaNs.

-Eric

--------------------------------------------------------------------
Eric M. Kemp                   Northrop Grumman Corporation
Meteorologist                  Information Systems
Civil Enterprise Solutions     Civil Systems Division

                               Goddard Space Flight Center
                               Mailstop 610.3
                               Greenbelt, MD 20771
                               Telephone   301-286-9768
                               Fax         301-286-1775
                               E-mail:     eric.kemp at nasa.gov
                               E-mail:     eric.kemp at ngc.com
--------------------------------------------------------------------


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From FLiu at azmag.gov  Fri Sep  2 12:31:59 2011
From: FLiu at azmag.gov (Feng Liu)
Date: Fri, 2 Sep 2011 18:31:59 +0000
Subject: [Wrf-users] TKE and velocity perturbation output?
In-Reply-To: <00a901cc68e3$8f404300$adc0c900$@ucsd.edu>
References: <00a901cc68e3$8f404300$adc0c900$@ucsd.edu>
Message-ID: <9BDE2A7F9712AF45A0C08451B3CD8E5C2630E2E3@mag9006>

Anders,
The option of km_opt is about calculation of turbulent diffusivity. If you want to have TKE in your output, you need to (1) use PBL schemes of TKE-related closure such as Mellor-Yamada-Janjic TKE scheme, MYNN 2.5/3rd  level  schemes; (2) to modify entries in IO column for TKE output in Registry file.  I hope that is helpful.
Feng

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Anders A Nottrott
Sent: Thursday, September 01, 2011 1:13 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] TKE and velocity perturbation output?

Hello All,

I am running some idealized LES cases for a convective ABL over a flat surface.  I was wondering if it is possible to get the resolved scale TKE as an output variable.  It seems to me that using km_opt=2 in the 'namelist' should give the resolved TKE as an output, but I do not find it in my netcdf output file.  I found the following in the ARW description document:
"Optionally, turbulent kinetic energy and any number of scalars such as water vapor mixing ratio, rain/snow mixing ratio, cloud water/ice mixing ratio, and chemical species and tracers."
Maybe this is only referring to the output obtained when using a PBL scheme?
Also is it possible to get information about the velocity perturbation as an output (e.g. u', v', w' or maybe the second moment)? I believe that the U, V, W output variables are the full velocities.  If I have to compute TKE and velocity fluctuation in post processing then I will have a lot of output data from the WRF run and post processing will be memory intensive.

Regards,

Anders Nottrott
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From wrf at nusculus.com  Fri Sep  2 12:21:40 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Fri, 2 Sep 2011 12:21:40 -0600
Subject: [Wrf-users] WRF Seasonal Variations
In-Reply-To: <A644457BC398E24787146788656183260820F0@EXCH10-MBX-02.home.ku.edu>
References: <A644457BC398E24787146788656183260820F0@EXCH10-MBX-02.home.ku.edu>
Message-ID: <CAHmdxudYT42MoOrr=7NpUd5ZVf4H0cBPY_Go66XTH5qOm_MvQw@mail.gmail.com>

Hi David,

No, the VEGPARM.TBL parameters get changed frequently (daily I believe or
perhaps with every timestep). The VEGPARM.TBL values represent a range and
get adjust within that range corresponding to the range of values the grid
cell gets from the greenfrac database within WPS, which populates the
GREENFRAC variable with average monthly values. During a run, WRF
interpolates between the 12 monthly values for the current day. But to cause
the updates to happen, you need to use the "sst_update" option in
namelist.input. I believe most of the parameters go up with the exception of
albedo, which goes from max to min as less soil is exposed when greenfrac
goes from min to max. Also, there is a "usemonalb" variable in the
namelist.input file which you might consider using (I don't).

If you turn on "sst_update" you have to re-run real.exe to produce another
input file for wrf.exe. Read the WRF Users Guide about configuring for the
new input files when "sst_update" is used.

Hmm. That was not explained well, but I hope you get the drift of what I was
trying to say. And there is a little more in the User Guide.

Kevin


On Thu, Sep 1, 2011 at 4:22 PM, Huber, David <dbh409 at ku.edu> wrote:

> Hello,
>
> If I were to perform a 1-year long simulation in WRF, would how often would
> it change the land cover parameters?  I noticed in VEGPARM.TBL that there
> are only winter and summer values, so does this mean that there is a sudden
> change in vegetation parameters once or possibly twice in a year-long
> simulation, that the vegetation parameters change regularly throughout the
> simulation, or that they stay the same as the initial vegetation parameters?
>
> Thanks,
>
> David
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
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From drostkier at yahoo.com  Mon Sep  5 06:43:09 2011
From: drostkier at yahoo.com (Dorita Rostkier-Edelstein)
Date: Mon, 5 Sep 2011 05:43:09 -0700 (PDT)
Subject: [Wrf-users] correcting landmask
Message-ID: <1315226589.30015.YahooMailNeo@web113107.mail.gq1.yahoo.com>

Hi folks,

Does anybody have an user friendly method to correct landmask in geo_em files? I have been using read_wrf_nc.f to change values. To identify the cells, or its i,j indexes in fact, I have plotted landmask using the high-resolution coast line of ncl and by trial and error found the i,j. Has anybody a better/systematic way to locate i,j's with wrong landmask?

Thanks.

Dorita
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From ahah at risoe.dtu.dk  Sat Sep  3 02:42:35 2011
From: ahah at risoe.dtu.dk (Hahmann, Andrea N.)
Date: Sat, 3 Sep 2011 10:42:35 +0200
Subject: [Wrf-users] WRF Seasonal Variations
In-Reply-To: <CAHmdxudYT42MoOrr=7NpUd5ZVf4H0cBPY_Go66XTH5qOm_MvQw@mail.gmail.com>
Message-ID: <CA87B324.3CCF%ahah@risoe.dtu.dk>

This is only true if using WRF V3.3.   And always check your output to make sure that the important variables (I.e. Albedo, surface roughness, etc) are being changed and used in the simulations.  In previous versions, the output field Z0 (background surface roughness length) changes with time, but this field was not actually used in the model calculations, ZNT was actually the field being used and it had only two values, one for summer and one for winter.

Andrea
----
Andrea N. Hahmann
Senior Scientist
Wind Energy Division
Ris? DTU

Technical University of Denmark
Ris? National Laboratory for Sustainable Energy
Frederikborgvej 399, P.O. Box 49
4000 Roskilde, Denmark

Direct +45 4677 5471
Mobil: +45 2133 0550
ahah at risoe.dtu.dk
http://www.risoe.dtu.dk

From: Kevin Matthew Nuss <wrf at nusculus.com<mailto:wrf at nusculus.com>>
Date: Fri, 2 Sep 2011 20:21:40 +0200
To: "Huber, David" <dbh409 at ku.edu<mailto:dbh409 at ku.edu>>
Cc: "wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>" <wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>>
Subject: Re: [Wrf-users] WRF Seasonal Variations

Hi David,

No, the VEGPARM.TBL parameters get changed frequently (daily I believe or perhaps with every timestep). The VEGPARM.TBL values represent a range and get adjust within that range corresponding to the range of values the grid cell gets from the greenfrac database within WPS, which populates the GREENFRAC variable with average monthly values. During a run, WRF interpolates between the 12 monthly values for the current day. But to cause the updates to happen, you need to use the "sst_update" option in namelist.input. I believe most of the parameters go up with the exception of albedo, which goes from max to min as less soil is exposed when greenfrac goes from min to max. Also, there is a "usemonalb" variable in the namelist.input file which you might consider using (I don't).

If you turn on "sst_update" you have to re-run real.exe to produce another input file for wrf.exe. Read the WRF Users Guide about configuring for the new input files when "sst_update" is used.

Hmm. That was not explained well, but I hope you get the drift of what I was trying to say. And there is a little more in the User Guide.

Kevin


On Thu, Sep 1, 2011 at 4:22 PM, Huber, David <dbh409 at ku.edu<mailto:dbh409 at ku.edu>> wrote:
Hello,

If I were to perform a 1-year long simulation in WRF, would how often would it change the land cover parameters?  I noticed in VEGPARM.TBL that there are only winter and summer values, so does this mean that there is a sudden change in vegetation parameters once or possibly twice in a year-long simulation, that the vegetation parameters change regularly throughout the simulation, or that they stay the same as the initial vegetation parameters?

Thanks,

David

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users


From jrausch at ubimet.com  Tue Sep  6 04:48:38 2011
From: jrausch at ubimet.com (Johannes Rausch)
Date: Tue, 06 Sep 2011 12:48:38 +0200
Subject: [Wrf-users] WRFVAR-Background Error Problem
Message-ID: <1315306118.16838.28.camel@pc43.it5.ubimet.at>

Hi,

I'm working on a working setup for a 2 way nested WRFVAR with
Radar-Refl. Data Assimilation for my university diploma. I'm using
cv-option=5 and generated BE's for 2 domains(12/4km) over a month of
WRF-Runs(GFS-driven). I managed too get nice analysis for coldstart and
warmstarts, but have also experienced through Verification that the
forecast-quality is not constant good.

At the moment I run it with var_scaling1-5=0.1 and len_scaling1-5=0.1
due to a ncar paper I read which deals with Doppler Radar DA.

Perhaps you could explain me, how I can find out in a "not empirical"
way(which means trying all possibilities of var and len scaling and take
the avaraged best one:) ), what the best configuration for the 3dVAR
is. 

I really would appreciate a answer of you, because i cannot work on
right now in a "proper" way. Thanks a lot.

Best Regards 
Johannes



From wrf at nusculus.com  Fri Sep  2 19:08:13 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Fri, 2 Sep 2011 19:08:13 -0600
Subject: [Wrf-users] Which QVAPOR values correspond to which Total
 Geopotential Height?
In-Reply-To: <CAC6Z7mBMzKUoOg5A_8DV_6_0DdZPs5sYgeJ6HVCEjChoP84-1w@mail.gmail.com>
References: <CAC6Z7mBMzKUoOg5A_8DV_6_0DdZPs5sYgeJ6HVCEjChoP84-1w@mail.gmail.com>
Message-ID: <CAHmdxufanLDLxjGUGfDgY_8cCEnL4vTcvDhJDQUdEqN4Q6c2wQ@mail.gmail.com>

Hi Erik,

The basic concept is that the "staggered" vertical grid is at the top and
bottom of each grid cell. Except for vertical wind, W, most variables are in
the vertical middle of the grid cell. So to get the height of the QVAPOR
variable, take the average of the top and bottom heights:

  height of QVAPOR in vertical cell n = ((PH(n)+PHB(n)) + (PH(n+1) +
PHB(n+1))) / 9.81

Of course, there are also the X and Y coordinates for the cell, but they are
the same for QVAPOR as for PH and PHB. If you then want QVAPOR "at a given
elevation" you will have to interpolate again from the two QVAPOR values
above and below the given elevation. So you interpolate PH and PHB to get
the vertical center of the cells and then interpolate to the "given
elevation." There are bound to be some algebraic shortcuts. And maybe
someone else will come up with a better approach.

Q2 has already been interpolated (more likely extrapolated) to the 2 meter
level for easy comparison to met station observations.

You didn't ask, but for the horizontally staggered grids, the U and V winds
are on the horizontal edges of the grid cell rather than in the middle, but
they are centered up and down, so they are at the same heights as QVAPOR.

Hope that helps,
Kevin

On Fri, Sep 2, 2011 at 2:02 PM, Erik Carlsten <ecarlste at gmail.com> wrote:

> Hi All,
>
> This is my first time using this mailing list so hopefully I give you the
> information you need to answer the question I have, providing you have the
> time to help.
>
> Currently I am running WRF and producing output just fine. The variables I
> am primarily interested in looking at right now are PH, PHB, and QVAPOR. I
> might also need Q2, but I am unsure yet due to my lack of overall
> understanding of the correlation between the staggered grid for elevation (
> ( PH + PHB ) / 9.81 ) and the non-staggered grid of QVAPOR.
>
> What I am trying to figure out is what the water vapor mixing ratio is at a
> given elevation. I am pulling the data straight out of the NetCDF files
> using C and Matlab, so I won't be using NCL at all for this.
>
> Can anyone explain with some detail on how I would determine which vertical
> layer of QVAPOR correlates to which vertical layer of "total geopotential
> height in meters"?
>
> Thanks very much for your time,
> Erik
>
> --
> Erik S. Carlsten              Cell: (406) 570-1547
> EPS 116                        Lab: (406) 994-6145
> Montana State University
> Bozeman, MT 59717
>
> ---------------------------------------------------------------
> There is a single light of science, and to
> brighten it anywhere is to brighten it
> everywhere.
>           - Isaac Asimov
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From james.himer at oracle.com  Wed Sep  7 12:00:23 2011
From: james.himer at oracle.com (james.himer at oracle.com)
Date: Wed, 7 Sep 2011 11:00:23 -0700 (PDT)
Subject: [Wrf-users] Auto Reply: Wrf-users Digest, Vol 85, Issue 5
Message-ID: <0e4ebb54-6a9e-4d27-8739-4f062ce5590a@default>

Sorry I missed your email but I am currently on vacation, returning Sep 19
(talk-like-a-pirate day).  Should you need assistance with SAE activities,
please contact my SAE Oil/gas colleague Melinda McDade or manager
Daryl Madura.



From reenb at meteo.psu.edu  Wed Sep  7 12:19:20 2011
From: reenb at meteo.psu.edu (Brian Reen)
Date: Wed, 07 Sep 2011 14:19:20 -0400
Subject: [Wrf-users] OBS nudging
In-Reply-To: <1B8D1B9BF4DCDC4A90A42E312FF308520752C7C9@irvine01.irvine.environ.local>
References: <1B8D1B9BF4DCDC4A90A42E312FF308520752C7C9@irvine01.irvine.environ.local>
Message-ID: <4E67B5A8.3080802@meteo.psu.edu>

Bart,
Regarding the auxinput11_interval_* settings for obs nudging, I think 
the following email written by Al Bourgeois at NCAR will clear things up:

*********************************************************************

There is some redundancy here with the auxiput11_interval and the
obs-nudging obs_ionf switch. All the auxinput11_interval variable really
does is give a frequency at which "wrf alarms" calls subroutine
wrf_fddaobs_in, which in turn calls subroutine in4dob to do the reading
of obs data based on the obs_ionf flag. So the safest thing to do is
simply to force the wrf alarms to call wrf_fddaobs_in every model
timestep. You can do this with the following namelist entry ... this is
what I always use:

   auxinput11_interval       =  1,    1,    1,    1,    1,
   auxinput11_end_h          = 99999,99999,99999,99999,99999,

(Notice I set "auxinput11_interval" here, not "auxinput11_interval_s".
Setting auxinput11_interval =1 means wrf alarms will call wrf_fddaobs_in
on every model iteration.) You can accomplish the same thing with
auxinput11_interval_s, as long as you set it equal to or smaller than
the model timestep in seconds. This will cause wrf alarms to check for
input (that is, to call wrf_fddaobs_in) at a frequency of every model
timestep. For example, with the above setting, if you used obs_ionf=2,
the result would be that wrf_fddaobs_in is called on every model
iteration, but input would only be read (i.e., sub in4dob would only be
called) on every other model iteration. Having wrf alarms check for
input on every iteration is an insignificant amount of overhead, and it
is the safest thing to do so that, regardless of the obs_ionf setting, a
read step is never skipped.

You can tell from the output if you are getting the fddaobs input at the
correct frequency by searching for lines that contain the text "CALL
IN4DOB AT". For example:

% grep "CALL IN4" rsl.out.0000

   ****** CALL IN4DOB AT KTAU = 0 AND XTIME =   0.00:  NSTA =   10 ******
   ****** CALL IN4DOB AT KTAU = 2 AND XTIME =   5.00:  NSTA =   10 ******
   ****** CALL IN4DOB AT KTAU = 4 AND XTIME =  10.00:  NSTA =   10 ******

shows that in4dob is reading obs input every other model iteration
(ktau), at a 5 minute interval. (In this example, obs_ionf = 2,
time_step = 150 (seconds), and auxinput11_interval = 1).


******************************************************

On 8/26/2011 2:38 PM, Bart Brashers wrote:
> I'm replying to my own question here, so others can find the solution.
> Solved.  Tags for searching: hourly OBS nudging, OBSGRID, WRF 3.3.
> Solution first, statement of the problem below.
>
>
>
> SOLUTION:
>
>
>
> In namelist.wps, set (among other settings):
>
>
>
> &share
>
> interval_seconds = 21600
>
>
>
> to match your input GRIB data (every 6 hours for my data).
>
>
>
> Make your obs_filename (OBS:*, little_r format) files each contain only
> 1 hour of data.  This conflicts somewhat with the statement in the WRF
> v3.3 Users Guide
> <http://www.mmm.ucar.edu/wrf/users/docs/user_guide_V3/users_guide_chap7.
> htm#namelist>  , Chapter 7, under OBSGRID Namelist: "Ideally there should
> be an obs_filename for each time period for which an objective analysis
> is desired."  I suppose I should interpret "objective analysis" as
> either the 3D objective analysis or the 2D surface analysis.
>
>
>
> I believe it should say that there should be an obs_filename for each
> intf4d (surface analysis) period.  This is the key.
>
>
>
> In namelist.obsgrid, set (among other settings):
>
>
>
> &record1
>
> interval =  21600
>
> &record2
>
> obs_filename = path/to/OBS
>
> &record7
>
> f4d      = .TRUE.
>
> intf4d   =  3600
>
>
>
> This will produce OBS_DOMAIN101 with 1 hour of data (+/- 30 minutes from
> the start time); OBS_DOMAIN102 with 5 hours of data; OBS_DOMAIN103 with
> 1 hour of data (+/- 30 minutes from start + interval [6 hours]); etc.
>
>
>
> You must concatenate all the OBS_DOMAIN1?? files into a single
> OBS_DOMAIN101 file in the WRF run directory.  The Users Guide does not
> explicitly state this, though the latest tutorial does.
>
>
>
> auxinput11_interval_m is the minimum time interval you would like to
> check for new observations.  If you want to nudge every hour, set this
> to 3600.   Note that this is listed in test/em_real/README.obs_fdda as
> auxinput11_interval_s = 180, (180 seconds) which I believe is a typo.
> They problem meant 180 minutes (3 hours).
>
>
>
> auxinput11_end_h is the time at which you want to WRF stop reading
> OBS_DOMAIN101.
>
>
>
> PROBLEM:
>
>
>
> Following the WRF v3.3 Users Guide, Chapter 7, my obs_filename (OBS:*,
> little_r format) files each contained 6 hours of data (to match interval
> = 21600).
>
>
>
> At each intf4d time interval, OBSGRID opens an obs_filename file with
> the current time-stamp.  It DOES NOT check for the existence of the file
> before it opens the file.
>
>
>
> So if your obs_filename (little_r) files each contain 6 hours of data,
> then at hour +1 it opens (and thus creates) a file with that time-stamp.
> Of course it's empty (newly created) so no data are read, and no data
> are output to the OBS_DOMAIN* file for that hour.  If you started with
> obs_filename files like this:
>
>
>
> -rw-rw-rw- 1 username 650M Aug 25 10:02 OBS:2008-01-29_12
>
> -rw-rw-rw- 1 username 630M Aug 25 10:10 OBS:2008-01-29_18
>
> -rw-rw-rw- 1 username 650M Aug 25 10:16 OBS:2008-01-30_00
>
>
>
> Then after OBSGRID.EXE had run, you'll have files like this:
>
>
>
> -rw-rw-rw- 1 username 650M Aug 25 10:02 OBS:2008-01-29_12
>
> -rw-rw-rw- 1 username    0 Aug 25 10:03 OBS:2008-01-29_13
>
> -rw-rw-rw- 1 username    0 Aug 25 10:05 OBS:2008-01-29_14
>
> -rw-rw-rw- 1 username    0 Aug 25 10:06 OBS:2008-01-29_15
>
> -rw-rw-rw- 1 username    0 Aug 25 10:07 OBS:2008-01-29_16
>
> -rw-rw-rw- 1 username    0 Aug 25 10:08 OBS:2008-01-29_17
>
> -rw-rw-rw- 1 username 630M Aug 25 10:10 OBS:2008-01-29_18
>
> -rw-rw-rw- 1 username    0 Aug 25 10:10 OBS:2008-01-29_19
>
> -rw-rw-rw- 1 username    0 Aug 25 10:12 OBS:2008-01-29_20
>
> -rw-rw-rw- 1 username    0 Aug 25 10:13 OBS:2008-01-29_21
>
> -rw-rw-rw- 1 username    0 Aug 25 10:14 OBS:2008-01-29_22
>
> -rw-rw-rw- 1 username    0 Aug 25 10:15 OBS:2008-01-29_23
>
> -rw-rw-rw- 1 username 650M Aug 25 10:16 OBS:2008-01-30_00
>
>
>
> and your OBS_DOMAIN1?? files will contain only data +/- 30 minutes from
> each interval (each 6 hours).
>
>
>
> Bart
>
>
>
> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
> Behalf Of Bart Brashers
> Sent: Wednesday, August 24, 2011 5:09 PM
> To: wrf-users at ucar.edu
> Cc: wrfhelp at ucar.edu
> Subject: [Wrf-users] OBS nudging
>
>
>
> I have a few questions about using OBS nudging in WRF v3.3.  I'm using
> the 12km NAM data, which comes in 6 hour intervals.  WPS ran fine, and I
> have met_em files every 6 hours.
>
>
>
> I have processed MADIS data to little_r format, and named the files
> OBS:YYYY-MM-DD_HH.  Each file contains 6 hours of data, which I've
> confirmed via grep (e.g. "grep 200801 OBS:2008-01-29_18 | cut -c 327-336
> | sort | uniq" shows the right time-stamps).
>
>
>
> 1. OBSGRID.EXE creates OBS_DOMAIN101, OBSDOMAIN102, etc.  But each file
> contains only ONE hour's data (the analysis hour +/- 30 minutes).  The
> OBS data for the next 5 hours is not output.  How can I get OBSGRID.EXE
> to create OBS_DOMAIN1* files that contain ALL the available data?  I
> want to nudge every hour, not every 6 hours.
>
>
>
> 2. The most recent notes in the WRF User's Guide
> <http://www.mmm.ucar.edu/wrf/users/wrfv3.1/How_to_run_obs_fdda.html>
> make no mention having to concatenate the OBS_DOMAIN1* output from
> OBSGRID.EXE to OBS_DOMAIN101, but the tutorial notes
> <http://www.mmm.ucar.edu/wrf/OnLineTutorial/Class/cases/obs_nudging1.php
>>   do say so.  Which is correct?  Will WRF not read OBS_DOMAIN102,
> OBS_DOMAIN103, etc.?
>
>
>
> 3. If I want to nudge every hour, do I set auxinput11_interval_m = 60 in
> WRF's namelist?  Or is that supposed to match OBSGRID's record1 interval
> ?
>
>
>
> 4. If I want to keep nudging till the very end of my simulation, can I
> set auxinput11_end_h = 99999?
>
>
>
> The meaning of these two values is pretty unclear in the
> README.namelist, README.obs_fdda, as well as the WRF User's Guide and
> tutorial notes.  If anyone can shed some light, I'd be most
> appreciative.
>
>
>
> Thanks,
>
>
>
> Bart
>
>
>
> ________________________________
>
> This message contains information that may be confidential, privileged
> or otherwise protected by law from disclosure. It is intended for the
> exclusive use of the Addressee(s). Unless you are the addressee or
> authorized agent of the addressee, you may not review, copy, distribute
> or disclose to anyone the message or any information contained within.
> If you have received this message in error, please contact the sender by
> electronic reply to email at environcorp.com and immediately delete all
> copies of the message.
>
>
>
> This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
>
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users


From andrew.robbie at gmail.com  Wed Sep  7 18:54:42 2011
From: andrew.robbie at gmail.com (Andrew Robbie (GMail))
Date: Thu, 8 Sep 2011 10:54:42 +1000
Subject: [Wrf-users] correcting landmask
In-Reply-To: <1315226589.30015.YahooMailNeo@web113107.mail.gq1.yahoo.com>
References: <1315226589.30015.YahooMailNeo@web113107.mail.gq1.yahoo.com>
Message-ID: <CAAogcnqYS=YRp+Ph13RY1L33+CyjUbQ3Fd0MxGWTdZF3E37C4Q@mail.gmail.com>

Check out tools: http://www.nusculus.com/wtools.

Andrew

On 05/09/2011 10:43 PM, "Dorita Rostkier-Edelstein" <drostkier at yahoo.com>
wrote:
> Hi folks,
>
> Does anybody have an user friendly method to correct landmask in geo_em
files? I have been using read_wrf_nc.f to change values. To identify the
cells, or its i,j indexes in fact, I have plotted landmask using the
high-resolution coast line of ncl and by trial and error found the i,j. Has
anybody a better/systematic way to locate i,j's with wrong landmask?
>
> Thanks.
>
> Dorita
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From anottrot at ucsd.edu  Wed Sep  7 15:44:54 2011
From: anottrot at ucsd.edu (Anders A Nottrott)
Date: Wed, 7 Sep 2011 14:44:54 -0700
Subject: [Wrf-users] How to limit number of threads in 'smpar' OpenMP runs?
Message-ID: <008301cc6da7$616cfb80$2446f280$@ucsd.edu>

Hi All,

 

I am trying to run an ideal LES simulation as a parallel process (i.e. using
option 'smpar'). I have an 8 core machine but I would like to limit the
number of threads to 4. I tried setting the environment variable
'OMP_NUM_THREADS=4' prior to configuration and compilation. However, when I
run wrf.exe I get the following just before the simulation begins:

WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS = 8
WRF TILE 1 IS 1 IE 100 JS 1 JE 13
WRF TILE 2 IS 1 IE 100 JS 14 JE 26
WRF TILE 3 IS 1 IE 100 JS 27 JE 38
WRF TILE 4 IS 1 IE 100 JS 39 JE 50
WRF TILE 5 IS 1 IE 100 JS 51 JE 62
WRF TILE 6 IS 1 IE 100 JS 63 JE 74
WRF TILE 7 IS 1 IE 100 JS 75 JE 87
WRF TILE 8 IS 1 IE 100 JS 88 JE 100
WRF NUMBER OF TILES = 8

I looked in 'module_tiles.F' and it appears that the variable 'num_tiles' is
assigned by the OMP_GET_MAX_THREADS function. Perhaps this is overriding the
environment setting??? Note that when I check my system performance the code
is running on all 8 cores, but this is not efficient since I want to run
other process on my machine. 

 

I also messed with some of the parameters in the namelist, e.g. 'tile_sz_x',
'tile_sz_y', 'numtiles', 'nproc_x', 'nproc_y', but to no avail.

 

Any suggestions will be most appreciated.

 

Regards,

 

Anders

 

 

Anders Nottrott

PhD Student, Mechanical and Environmental Engineering

University of California, San Diego

Department of Mechanical and Aerospace Engineering

Website: <solar.ucsd.edu/nottrott>

 

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From jaareval at gmail.com  Fri Sep  9 09:30:09 2011
From: jaareval at gmail.com (Jorge Alejandro Arevalo Borquez)
Date: Fri, 9 Sep 2011 11:30:09 -0400
Subject: [Wrf-users] Old GFS data for initialize WRF
Message-ID: <CAGTKt-6hzK0N0FR7NZRb6k9VujzPbCbRa38KWaN-vEqd25=P5Q@mail.gmail.com>

Dears,

I need to perform some simulations with WRF for past times, but it must be
under the same conditions of forecast. I mean in need to run WRF with GFS
data, FNL does not work for my study.  My problem is on get GFS 1 degree
forecast data for WRF on these times.

Does anyone of you know where can i get it? or does someone have it stored
and can share it with me?

I need at least daily forecast data up to 72 hours for the next dates:
from Novembre 12 to November 22 of 2004
from November 11 to November 21 of 2005
from November 01 to November 13 of 2006

Any help will be very apreciated

Regards

Jorge Ar?valo B?rquez
Coordinador Lab. Modelaci?n Atmosf?rica
Departamento de Meteorolog?a
Universidad de Valpara?so, Chile
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From moudipascal at yahoo.fr  Thu Sep  8 07:55:18 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Thu, 8 Sep 2011 14:55:18 +0100 (BST)
Subject: [Wrf-users] (no subject)
Message-ID: <1315490118.2316.YahooMailNeo@web29017.mail.ird.yahoo.com>

Dear All,
I would like to know if i can build WRF3.2.1 with gfortran compiler on fedora 15?
What should be the netcdf version which will work

Best regards

?
Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From siemprelgas at gmail.com  Fri Sep  9 00:39:53 2011
From: siemprelgas at gmail.com (Guillermo Perez)
Date: Fri, 9 Sep 2011 08:39:53 +0200
Subject: [Wrf-users] OBSGRID: Surface observations for Surface FDDA
Message-ID: <CAO4Su4dnrd-PyPxyEoNn=paszOeodDQivc3c1CMa75ub_QX+Pg@mail.gmail.com>

Greetings,

I'm a Spanish Chemical Engineering student.
I'm writting you because I'm trying to run OBSGRID but I have a doubt with
the ingestion of observational data.

As I understand in the manual, I have concatenated upper air observations
and surface observations in the same file (concretely NCEP ADP data for
both). I want to run it with FD4=.TRUE., and I set intf4d=3600.

Then when I run OBSGRID, it looks like the program doesn't process periods
00 06 12 18 for surface fdda, but does it only for 03 09 15 21.

My question is, Am I doing it right? do I have to copy the 00 file and
rename it with 03 so that the program can process it? In MM5 it was possible
to set surface observations apart from upper air ones and also the program
didn't need a file for each period of time, that's why I'm a bit confused.

Awainting your soonest reply

Thank You very much
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From william.gustafson at pnnl.gov  Fri Sep  9 13:17:48 2011
From: william.gustafson at pnnl.gov (Gustafson, William I)
Date: Fri, 9 Sep 2011 12:17:48 -0700
Subject: [Wrf-users] Old GFS data for initialize WRF
In-Reply-To: <CAGTKt-6hzK0N0FR7NZRb6k9VujzPbCbRa38KWaN-vEqd25=P5Q@mail.gmail.com>
Message-ID: <CA8FB46C.A731%william.gustafson@pnnl.gov>

Jorge,

I typically get GFS data from NCDC at http://nomads.ncdc.noaa.gov/data.php#hires_weather_datasets. I believe NCAR also has GFS, but I have not used it from that location.

-Bill


On 9/9/11 8:30 AM, "Jorge Alejandro Arevalo Borquez" <jaareval at gmail.com> wrote:

Dears,

I need to perform some simulations with WRF for past times, but it must be under the same conditions of forecast. I mean in need to run WRF with GFS data, FNL does not work for my study.  My problem is on get GFS 1 degree forecast data for WRF on these times.

Does anyone of you know where can i get it? or does someone have it stored and can share it with me?

I need at least daily forecast data up to 72 hours for the next dates:
from Novembre 12 to November 22 of 2004
from November 11 to November 21 of 2005
from November 01 to November 13 of 2006

Any help will be very apreciated

Regards

Jorge Ar?valo B?rquez
Coordinador Lab. Modelaci?n Atmosf?rica
Departamento de Meteorolog?a
Universidad de Valpara?so, Chile



_______________________________________________
William I. Gustafson Jr., Ph.D.
Scientist
ATMOSPHERIC SCIENCES AND GLOBAL CHANGE DIVISION

Pacific Northwest National Laboratory
P.O. 999, MSIN K9-30
Richland, WA  99352
Tel: 509-372-6110
William.Gustafson at pnnl.gov
http://www.pnnl.gov/atmospheric/staff/staff_info.asp?staff_num=5716
http://www.researcherid.com/rid/A-7732-2008

From maemarcus at gmail.com  Sat Sep 10 02:38:33 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Sat, 10 Sep 2011 12:38:33 +0400
Subject: [Wrf-users] (no subject)
In-Reply-To: <1315490118.2316.YahooMailNeo@web29017.mail.ird.yahoo.com>
References: <1315490118.2316.YahooMailNeo@web29017.mail.ird.yahoo.com>
Message-ID: <CAGR4S9FNV1QRHTj_gVFdVKN1ewOvxo8y593e-1mAYhzMf6KWhQ@mail.gmail.com>

Hi Pascal,

WRF 3.2 should use netcdf 4.1.1. On Fedora 15 I compiled 3.3 with
4.2.1, and it works fine.

- D.

2011/9/8 moudi pascal <moudipascal at yahoo.fr>:
> Dear All,
> I would like to know if i can build WRF3.2.1 with gfortran compiler on
> fedora 15?
> What should be the netcdf version which will work
> Best regards
>
> Pascal MOUDI IGRI
>
> Ph-D Student
> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
> Department of Physics
> Faculty of Science
> University of Yaounde I, Cameroon
> National Advanced Training School for Technical Education,
> Electricity Engineering, Douala
>
> Tel:+237 75 32 58 52
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>

From maemarcus at gmail.com  Sat Sep 10 02:54:27 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Sat, 10 Sep 2011 12:54:27 +0400
Subject: [Wrf-users] How to limit number of threads in 'smpar' OpenMP
	runs?
In-Reply-To: <008301cc6da7$616cfb80$2446f280$@ucsd.edu>
References: <AcxtpvHy7Bw0RJqIToS8Wuwfz66gWQ==>
	<008301cc6da7$616cfb80$2446f280$@ucsd.edu>
Message-ID: <CAGR4S9E8FP8cu3gZgCmZcmSu3LEGBj+K_mL8aZ4z7e1ZqSoLBg@mail.gmail.com>

Hi Anders,

>  I tried setting the environment variable
> 'OMP_NUM_THREADS=4' prior to configuration and compilation.

I think OMP_NUM_THREADS is a runtime setting, i.e. it affects only the
resulting OpenMP application. So you should specify OMP_NUM_THREADS=4
with wrf.exe invocation. Then OMP_GET_MAX_THREADS should be adjusted
to this number. My guess is based on the following test case:

[marcusmae at loveland omptest]$ cat omptest.c
#include <omp.h>
#include <stdio.h>

int main()
{
	printf("omp_get_max_threads = %d\n", omp_get_max_threads());
	return 0;
}

[marcusmae at loveland omptest]$ make
gcc -fopenmp omptest.c -o omptest
[marcusmae at loveland omptest]$ ./omptest
omp_get_max_threads = 2
[marcusmae at loveland omptest]$ OMP_NUM_THREADS=4 ./omptest
omp_get_max_threads = 4
[marcusmae at loveland omptest]$

- D.

2011/9/8 Anders A Nottrott <anottrot at ucsd.edu>:
> Hi All,
>
>
>
> I am trying to run an ideal LES simulation as a parallel process (i.e. using
> option 'smpar'). I have an 8 core machine but I would like to limit the
> number of threads to 4. I tried setting the environment variable
> 'OMP_NUM_THREADS=4' prior to configuration and compilation. However, when I
> run wrf.exe I get the following just before the simulation begins:
>
> WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS = 8
> WRF TILE 1 IS 1 IE 100 JS 1 JE 13
> WRF TILE 2 IS 1 IE 100 JS 14 JE 26
> WRF TILE 3 IS 1 IE 100 JS 27 JE 38
> WRF TILE 4 IS 1 IE 100 JS 39 JE 50
> WRF TILE 5 IS 1 IE 100 JS 51 JE 62
> WRF TILE 6 IS 1 IE 100 JS 63 JE 74
> WRF TILE 7 IS 1 IE 100 JS 75 JE 87
> WRF TILE 8 IS 1 IE 100 JS 88 JE 100
> WRF NUMBER OF TILES = 8
>
> I looked in 'module_tiles.F' and it appears that the variable 'num_tiles' is
> assigned by the OMP_GET_MAX_THREADS function. Perhaps this is overriding the
> environment setting??? Note that when I check my system performance the code
> is running on all 8 cores, but this is not efficient since I want to run
> other process on my machine.
>
>
>
> I also messed with some of the parameters in the namelist, e.g. ?tile_sz_x?,
> ?tile_sz_y?, ?numtiles?, ?nproc_x?, ?nproc_y?, but to no avail.
>
>
>
> Any suggestions will be most appreciated.
>
>
>
> Regards,
>
>
>
> Anders
>
>
>
>
>
> Anders Nottrott
>
> PhD Student, Mechanical and Environmental Engineering
>
> University of California, San Diego
>
> Department of Mechanical and Aerospace Engineering
>
> Website: <solar.ucsd.edu/nottrott>
>
>
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>

From mkudsy at gmail.com  Fri Sep  9 15:02:44 2011
From: mkudsy at gmail.com (M Kudsy)
Date: Sat, 10 Sep 2011 04:02:44 +0700
Subject: [Wrf-users] (no subject)
In-Reply-To: <1315490118.2316.YahooMailNeo@web29017.mail.ird.yahoo.com>
References: <1315490118.2316.YahooMailNeo@web29017.mail.ird.yahoo.com>
Message-ID: <CADFGn_9s6J5x3x2jWDqGDuZX9EZ9Gx-2--QQC2rVBymJFBpqGA@mail.gmail.com>

I built it on 14 neatly. There should not be a problem I think, because my
office friend has build it on 15. Gfortran is better than Intel ifort.

On Thu, Sep 8, 2011 at 8:55 PM, moudi pascal <moudipascal at yahoo.fr> wrote:

> Dear All,
> I would like to know if i can build WRF3.2.1 with gfortran compiler on
> fedora 15?
> What should be the netcdf version which will work
>
> Best regards
>
> Pascal MOUDI IGRI
>
> Ph-D Student
> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
> Department of Physics
> Faculty of Science
> University of Yaounde I, Cameroon
> National Advanced Training School for Technical Education,
> Electricity Engineering, Douala
>
> Tel:+237 75 32 58 52
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 
Dr.Mahally Kudsy
Weather Modification Technology Center
Agency for the Assessment and Application of Technology
Jln MH Thamrin 8, Jakarta, Indonesia
Telp:62-21-3168830 Fax:62-21-3906225 mkudsy at gmail.com
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From mmkamal at uwaterloo.ca  Mon Sep 12 10:17:35 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Mon, 12 Sep 2011 12:17:35 -0400
Subject: [Wrf-users] "NetCDF error: NetCDF: Attribute not found" error
	during real.exe
Message-ID: <20110912121735.2769255i2tu06t1c@www.nexusmail.uwaterloo.ca>

Hi!

I have been trying to run WRF 3.3 in my machine (configuration is  
given below) using IBM compiler but confused in some point. Although I  
have successfully finish running WRF there but the following message  
confused me. I am getting an error message called "NetCDF error:  
NetCDF: Attribute not found" in the "rsl.error.0000" and  
"rsl.out.0000" log file but not in the rest of the log files. But  
fortunately I am getting the message "real_em: SUCCESS COMPLETE  
REAL_EM INIT" at the end of each log files and running wrf.exe  
generate history files. I have checked the output as well and looks  
fine. Could anyone please tell me whether it is a problem or not? I  
look forward to hearing from you.


Thanks
Kamal
PhD student
University of Waterloo, Canada

===================================================
Machine configuration
===================================================
3,328 cores of IBM Power 6 (4.7 GHz)
Operating System AIX 5.3
Interconnect Infiniband
Ram/Node 128 GB (256 on 2 nodes)
Cores/Node 32
Vendor Compilers xlc (C) xlf (fortran) xlC (C++)
----------------------------------------------------------
Libraries used

1) netcdf/4.0.1_nc3 2) parallel-netcdf/1.1.1

===================================================
I get the following message from LoadLeveler
==================================================
From: LoadLeveler


LoadLeveler Job Step: tcs-f11n06.33773.0
Executable: /scratch/mkamal/WRF_tcs/WRFV3/test/em_real/real.exe
Executable arguments:
State for machine: tcs-f08n10

LoadL_starter: The program, real.exe, exited normally and returned an  
exit code of 0.

State for machine: tcs-f08n12

This job step was dispatched to run 1 time(s).
This job step was rejected by Starter 0 time(s).
Submitted at: Thu Sep 8 17:58:14 2011
Started at: Thu Sep 8 17:58:20 2011
Exited at: Thu Sep 8 18:00:56 2011
Real Time: 0 00:02:42
Job Step User Time: 0 02:24:16
Job Step System Time: 0 00:11:32
Total Job Step Time: 0 02:35:48

Starter User Time: 0 00:00:00
Starter System Time: 0 00:00:13
Total Starter Time: 0 00:00:13
---------------------------------------------------------------------

##############################################
gpc-f101n084-$ vi rsl.error.0000
##############################################
taskid: 0 hostname: tcs-f08n10
Namelist dfi_control not found in namelist.input. Using registry  
defaults for variables in dfi_control
Namelist tc not found in namelist.input. Using registry defaults for  
variables in tc
Namelist scm not found in namelist.input. Using registry defaults for  
variables in scm
Namelist fire not found in namelist.input. Using registry defaults for  
variables in fire
Ntasks in X 8 , ntasks in Y 16
--- NOTE: grid_fdda is 0 for domain 1, setting gfdda interval and  
ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 1,  
setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 1, setting obs nudging  
interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 2, setting gfdda interval and  
ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 2,  
setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 2, setting obs nudging  
interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 3, setting gfdda interval and  
ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 3,  
setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 3, setting obs nudging  
interval and ending time to 0 for that domain.
--- NOTE: num_soil_layers has been set to 4
REAL_EM V3.3 PREPROCESSOR
real_em: calling alloc_and_configure_domain
*************************************
Parent domain
ids,ide,jds,jde 1 225 1 175
ims,ime,jms,jme -4 35 -4 18
ips,ipe,jps,jpe 1 28 1 11
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1 , 20923412 bytes allocated
setup_timekeeping: set xtime to 0.0000000000E+00
setup_timekeeping: set julian to 182.0000000
setup_timekeeping: returning...
d01 2002-07-02_00:00:00 real_em: calling set_scalar_indices_from_config
d01 2002-07-02_00:00:00 real_em: calling model_to_grid_config_rec
d01 2002-07-02_00:00:00 real_em: calling init_wrfio
d01 2002-07-02_00:00:00 Entering ext_gr1_ioinit
d01 2002-07-02_00:00:00 real_em: re-broadcast the configuration records
d01 2002-07-02_00:00:00 calling med_sidata_input
d01 2002-07-02_00:00:00 med_sidata_input: calling open_r_dataset for  
met_em.d<domain>.<date>
d01 2002-07-02_00:00:00 med_sidata_input: calling input_auxinput1
metgrid input_wrf.F first_date_input = 2002-07-02_00:00:00
metgrid input_wrf.F first_date_nml = 2002-07-02_00:00:00
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code REAL,  
line 83 Element P_TOP
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code REAL,  
line 83 Element GMT
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code  
INTEGER, line 83 Element JULYR
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code  
INTEGER, line 83 Element JULDAY
d01 2002-07-02_00:00:00 mminlu = 'USGS'

######################################
gpc-f101n084-$ vi rsl.out.0000
######################################
taskid: 0 hostname: tcs-f08n10
Namelist dfi_control not found in namelist.input. Using registry  
defaults for variables in dfi_control
Namelist tc not found in namelist.input. Using registry defaults for  
variables in tc
Namelist scm not found in namelist.input. Using registry defaults for  
variables in scm
Namelist fire not found in namelist.input. Using registry defaults for  
variables in fire
Ntasks in X 8 , ntasks in Y 16
--- NOTE: grid_fdda is 0 for domain 1, setting gfdda interval and  
ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 1,  
setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 1, setting obs nudging  
interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 2, setting gfdda interval and  
ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 2,  
setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 2, setting obs nudging  
interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 3, setting gfdda interval and  
ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 3,  
setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 3, setting obs nudging  
interval and ending time to 0 for that domain.
--- NOTE: num_soil_layers has been set to 4
REAL_EM V3.3 PREPROCESSOR
real_em: calling alloc_and_configure_domain
*************************************
Parent domain
ids,ide,jds,jde 1 225 1 175
ims,ime,jms,jme -4 35 -4 18
ips,ipe,jps,jpe 1 28 1 11
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1 , 20923412 bytes allocated
setup_timekeeping: set xtime to 0.0000000000E+00
setup_timekeeping: set julian to 182.0000000
setup_timekeeping: returning...
d01 2002-07-02_00:00:00 real_em: calling set_scalar_indices_from_config
d01 2002-07-02_00:00:00 real_em: calling model_to_grid_config_rec
d01 2002-07-02_00:00:00 real_em: calling init_wrfio
d01 2002-07-02_00:00:00 Entering ext_gr1_ioinit
d01 2002-07-02_00:00:00 real_em: re-broadcast the configuration records
d01 2002-07-02_00:00:00 calling med_sidata_input
Time period # 1 to process = 2002-07-02_00:00:00.
Time period # 2 to process = 2002-07-02_03:00:00.
Time period # 3 to process = 2002-07-02_06:00:00.
Time period # 4 to process = 2002-07-02_09:00:00.
Time period # 5 to process = 2002-07-02_12:00:00.
Time period # 6 to process = 2002-07-02_15:00:00.
Time period # 7 to process = 2002-07-02_18:00:00.
Time period # 8 to process = 2002-07-02_21:00:00.
Time period # 9 to process = 2002-07-03_00:00:00.
Total analysis times to input = 9.

-----------------------------------------------------------------------------

Domain 1: Current date being processed: 2002-07-02_00:00:00.0000,  
which is loop # 1 out of 9
configflags%julyr, %julday, %gmt: 2002 183 0.0000000000E+00
d01 2002-07-02_00:00:00 med_sidata_input: calling open_r_dataset for  
met_em.d<domain>.<date>
d01 2002-07-02_00:00:00 med_sidata_input: calling input_auxinput1
metgrid input_wrf.F first_date_input = 2002-07-02_00:00:00
metgrid input_wrf.F first_date_nml = 2002-07-02_00:00:00
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code REAL,  
line 83 Element P_TOP
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code REAL,  
line 83 Element GMT
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code  
INTEGER, line 83 Element JULYR
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Attribute not found
d01 2002-07-02_00:00:00 NetCDF error in ext_ncd_get_dom_ti.code  
INTEGER, line 83 Element JULDAY
d01 2002-07-02_00:00:00 mminlu = 'USGS'
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Variable not found
d01 2002-07-02_00:00:00 NetCDF error in wrf_io.F90, line 2712 Varname PTHETA
d01 2002-07-02_00:00:00 NetCDF error: NetCDF: Variable not found
d01 2002-07-02_00:00:00 NetCDF error in wrf_io.F90, line 2712 Varname QV

==========================================================================
Configure.wrf
==========================================================================
#### Architecture specific settings ####

# Settings for AIX xlf compiler with xlc (dmpar)
#
DMPARALLEL = 1
OMPCPP = # -D_OPENMP
OMP = # -qsmp=noauto
OMPCC = # -qsmp=noauto
SFC = xlf90_r
SCC = cc_r
SC99 = c99_r
CCOMP = cc_r
DM_FC = mpxlf90_r
DM_CC = mpcc_r -DMPI2_SUPPORT
FC = timex $(DM_FC)
CC = $(DM_CC) -DFSEEKO64_OK
LD = $(FC)
RWORDSIZE = $(NATIVE_RWORDSIZE)
PROMOTION = -qrealsize=$(RWORDSIZE) -qintsize=4
ARCH_LOCAL = -DNONSTANDARD_SYSTEM_SUBR -DNATIVE_MASSV
CFLAGS_LOCAL = -DNOUNDERSCORE
LDFLAGS_LOCAL = -lmass -lmassv
CPLUSPLUSLIB = -lC
ESMF_LDFLAG = $(CPLUSPLUSLIB)
# -qhot commented out in 3.0.1.1 release because of reported problems with
# model results under certain configurations. Use at your own risk.
FCOPTIM = -O3 # -qhot
FCREDUCEDOPT = -O2
FCNOOPT = -qnoopt
FCDEBUG = # -g $(FCNOOPT) -qfullpath
FORMAT_FIXED = -qfixed
FORMAT_FREE = -qfree=f90
FCSUFFIX = -qsuffix=f=f90
BYTESWAPIO =
FCBASEOPTS_NO_G = -w -qspill=20000 -qmaxmem=32767 $(FORMAT_FREE)  
$(BYTESWAPIO) #-qflttrap=zerodivide:invalid:enable -qsigtrap -C #  
-qinitauto=7FF7FFFF
FCBASEOPTS = $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =
TRADFLAG =
CPP = /lib/cpp -C -P
AR = ar
ARFLAGS = ru
M4 = m4 -B 14000
RANLIB = ranlib
CC_TOOLS = cc

==========================================================================
LIB_EXTERNAL = \
-L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf  
-L/scinet/tcs/Libraries/netcdf-4.0.1_nc3/lib -lnetcdf  
-L$(WRF_SRC_ROOT_DIR)/external/io_pnetcdf -lwrfio_pnf  
-L/scinet/tcs/Libraries/parallel-netcdf-1.1.1/lib -lpnetcdf

###########################################################

===========================================================
Configure.wps
===========================================================


#### Architecture specific settings ####

# Settings for AIX DM parallel, NO GRIB2
#
COMPRESSION_LIBS =
COMPRESSION_INC =
FDEFS =
NCARG_LIBS =
NCARG_LIBS2 = -L/usr/local/lib64/r4i4 -lncarg -lncarg_gks -lncarg_c \
-L/usr/X11R6/lib -lX11 -lpng_ncl -lz_ncl
FC = mpxlf90_r
SFC = xlf90_r
FFLAGS = -qfree=f90
F77FLAGS = -qfixed
FCSUFFIX = -qsuffix=f=f90
FNGFLAGS = $(FFLAGS)
LDFLAGS =
CC = mpcc_r
SCC = cc
CFLAGS =
CPP = /usr/lib/cpp -C -P
CPPFLAGS = -DAIX -DIBM4 -DIO_NETCDF -DIO_BINARY -DIO_GRIB1 -D_MPI -DBIT32
ARFLAGS =

============================================================================




From saji at u-aizu.ac.jp  Sun Sep 11 22:14:42 2011
From: saji at u-aizu.ac.jp (Saji Hameed)
Date: Mon, 12 Sep 2011 13:14:42 +0900
Subject: [Wrf-users] How to limit number of threads in 'smpar' OpenMP
	runs?
In-Reply-To: <008301cc6da7$616cfb80$2446f280$@ucsd.edu>
References: <008301cc6da7$616cfb80$2446f280$@ucsd.edu>
Message-ID: <CABwkKsD1fg11WiHeGrAqMq-wB__nGVMXMRKTpnE3OekoVvE3uA@mail.gmail.com>

Hi Anders,

Setting OMP_NUM_THREADS should do fine. Exactly how do you set this? For
example for a bash shell, one should 'export' the environment variable
export OMP_NUM_THREADS=4

saji


On Thu, Sep 8, 2011 at 6:44 AM, Anders A Nottrott <anottrot at ucsd.edu> wrote:

> Hi All,****
>
> ** **
>
> I am trying to run an ideal LES simulation as a parallel process (i.e.
> using option 'smpar'). I have an 8 core machine but I would like to limit
> the number of threads to 4. I tried setting the environment variable
> 'OMP_NUM_THREADS=4' prior to configuration and compilation. However, when I
> run wrf.exe I get the following just before the simulation begins:
>
> WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS = 8
> WRF TILE 1 IS 1 IE 100 JS 1 JE 13
> WRF TILE 2 IS 1 IE 100 JS 14 JE 26
> WRF TILE 3 IS 1 IE 100 JS 27 JE 38
> WRF TILE 4 IS 1 IE 100 JS 39 JE 50
> WRF TILE 5 IS 1 IE 100 JS 51 JE 62
> WRF TILE 6 IS 1 IE 100 JS 63 JE 74
> WRF TILE 7 IS 1 IE 100 JS 75 JE 87
> WRF TILE 8 IS 1 IE 100 JS 88 JE 100
> WRF NUMBER OF TILES = 8
>
> I looked in 'module_tiles.F' and it appears that the variable 'num_tiles'
> is assigned by the OMP_GET_MAX_THREADS function. Perhaps this is overriding
> the environment setting??? Note that when I check my system performance the
> code is running on all 8 cores, but this is not efficient since I want to
> run other process on my machine. ****
>
> ** **
>
> I also messed with some of the parameters in the namelist, e.g.
> ?tile_sz_x?, ?tile_sz_y?, ?numtiles?, ?nproc_x?, ?nproc_y?, but to no avail.
> ****
>
> ** **
>
> Any suggestions will be most appreciated.****
>
> ** **
>
> Regards,****
>
> ** **
>
> Anders****
>
> ** **
>
> ** **
>
> Anders Nottrott****
>
> *PhD Student, Mechanical and Environmental Engineering*
>
> University of California, San Diego****
>
> Department of Mechanical and Aerospace Engineering****
>
> Website: <solar.ucsd.edu/nottrott>****
>
> ** **
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 

Saji N Hameed,
ARC-ENV, Center for Advanced Information Science and Technology,
University of Aizu, Tsuruga, Ikki-machi,
Aizuwakamatsu-shi, Fukushima 965-8580,
Japan

Tel: +81242 37-2736
Fax:+81242 37-2760
 email: saji at u-aizu.ac.jp
 url: http://www.u-aizu.ac.jp
 bib: http://www.researcherid.com/rid/B-9188-2009
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From wrf at nusculus.com  Sat Sep 10 12:41:21 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Sat, 10 Sep 2011 12:41:21 -0600
Subject: [Wrf-users] How to limit number of threads in 'smpar' OpenMP
	runs?
In-Reply-To: <008301cc6da7$616cfb80$2446f280$@ucsd.edu>
References: <008301cc6da7$616cfb80$2446f280$@ucsd.edu>
Message-ID: <CAHmdxuf13sPsEJnKj4-Sf1GAW0A7=VxKCGLXsbs-tySkjnfXCw@mail.gmail.com>

Hi Anders,

The "OMP_NUM_THREADS=4" needs to be set pryor to running the program rather
than before compiling. That environmental variable from the shell is checked
implicitly at the beginning of each run. I have used it on my Linux
workstation in the past. I imagine the newer releases will work just fine
too, although I have not tried it with any "ideal" simulations.

Kevin



On Wed, Sep 7, 2011 at 3:44 PM, Anders A Nottrott <anottrot at ucsd.edu> wrote:

> Hi All,****
>
> ** **
>
> I am trying to run an ideal LES simulation as a parallel process (i.e.
> using option 'smpar'). I have an 8 core machine but I would like to limit
> the number of threads to 4. I tried setting the environment variable
> 'OMP_NUM_THREADS=4' prior to configuration and compilation. However, when I
> run wrf.exe I get the following just before the simulation begins:
>
> WRF NUMBER OF TILES FROM OMP_GET_MAX_THREADS = 8
> WRF TILE 1 IS 1 IE 100 JS 1 JE 13
> WRF TILE 2 IS 1 IE 100 JS 14 JE 26
> WRF TILE 3 IS 1 IE 100 JS 27 JE 38
> WRF TILE 4 IS 1 IE 100 JS 39 JE 50
> WRF TILE 5 IS 1 IE 100 JS 51 JE 62
> WRF TILE 6 IS 1 IE 100 JS 63 JE 74
> WRF TILE 7 IS 1 IE 100 JS 75 JE 87
> WRF TILE 8 IS 1 IE 100 JS 88 JE 100
> WRF NUMBER OF TILES = 8
>
> I looked in 'module_tiles.F' and it appears that the variable 'num_tiles'
> is assigned by the OMP_GET_MAX_THREADS function. Perhaps this is overriding
> the environment setting??? Note that when I check my system performance the
> code is running on all 8 cores, but this is not efficient since I want to
> run other process on my machine. ****
>
> ** **
>
> I also messed with some of the parameters in the namelist, e.g.
> ?tile_sz_x?, ?tile_sz_y?, ?numtiles?, ?nproc_x?, ?nproc_y?, but to no avail.
> ****
>
> ** **
>
> Any suggestions will be most appreciated.****
>
> ** **
>
> Regards,****
>
> ** **
>
> Anders****
>
> ** **
>
> ** **
>
> Anders Nottrott****
>
> *PhD Student, Mechanical and Environmental Engineering*
>
> University of California, San Diego****
>
> Department of Mechanical and Aerospace Engineering****
>
> Website: <solar.ucsd.edu/nottrott>****
>
> ** **
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
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From moudipascal at yahoo.fr  Tue Sep 13 03:50:43 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Tue, 13 Sep 2011 10:50:43 +0100 (BST)
Subject: [Wrf-users] WRF compilation with gfortran
Message-ID: <1315907443.47695.YahooMailNeo@web29015.mail.ird.yahoo.com>

I am using 

?Linux hpz800 2.6.40.3-0.fc15.x86_64 #1 SMP Tue Aug 16 04:10:59 UTC 2011 x86_64 x86_64 x86_64 GNU/Linux.

For configure, i used? option 17 (gfortran? with gcc dmpar)
The completion is unsuccessfull



Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From maemarcus at gmail.com  Tue Sep 13 09:57:52 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Tue, 13 Sep 2011 19:57:52 +0400
Subject: [Wrf-users] WRF compilation with gfortran
In-Reply-To: <1315907443.47695.YahooMailNeo@web29015.mail.ird.yahoo.com>
References: <1315907443.47695.YahooMailNeo@web29015.mail.ird.yahoo.com>
Message-ID: <CAGR4S9FA7_EDZM8ogQ9=DOYrQVtLub+B1ZUaJz8i0tUO3NbJ2w@mail.gmail.com>

Hi Pascal,

call random_seed (PUT=seed)

Error: Size of 'put' argument of 'random_seed' intrinsic at (1) too small (8/12)

- I met this too. Workaround is to enlarge seed variable as requested.

2011/9/13 moudi pascal <moudipascal at yahoo.fr>:
> I am using
> ?Linux hpz800 2.6.40.3-0.fc15.x86_64 #1 SMP Tue Aug 16 04:10:59 UTC 2011
> x86_64 x86_64 x86_64 GNU/Linux.
>
> For configure, i used? option 17 (gfortran? with gcc dmpar)
> The completion is unsuccessfull
>
>
> Pascal MOUDI IGRI
>
> Ph-D Student
> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
> Department of Physics
> Faculty of Science
> University of Yaounde I, Cameroon
> National Advanced Training School for Technical Education,
> Electricity Engineering, Douala
>
> Tel:+237 75 32 58 52
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>

From maemarcus at gmail.com  Tue Sep 13 10:54:56 2011
From: maemarcus at gmail.com (Dmitry N. Mikushin)
Date: Tue, 13 Sep 2011 20:54:56 +0400
Subject: [Wrf-users] Re :  WRF compilation with gfortran
In-Reply-To: <1315931605.90614.YahooMailNeo@web29006.mail.ird.yahoo.com>
References: <1315907443.47695.YahooMailNeo@web29015.mail.ird.yahoo.com>
	<CAGR4S9FA7_EDZM8ogQ9=DOYrQVtLub+B1ZUaJz8i0tUO3NbJ2w@mail.gmail.com>
	<1315931605.90614.YahooMailNeo@web29006.mail.ird.yahoo.com>
Message-ID: <CAGR4S9Efxee4Jh++Vs_y4kfV0tGAuOy3b7wGZdqop2PwHnRMjQ@mail.gmail.com>

In file phys/module_cu_g3.F

Replace line

integer,  dimension (8) :: seed

with line

integer,  dimension (12) :: seed

- D.

2011/9/13 moudi pascal <moudipascal at yahoo.fr>:
> What i have to do please
>
> Pascal MOUDI IGRI
>
> Ph-D Student
> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
> Department of Physics
> Faculty of Science
> University of Yaounde I, Cameroon
> National Advanced Training School for Technical Education,
> Electricity Engineering, Douala
>
> Tel:+237 75 32 58 52
> ________________________________
> De?: Dmitry N. Mikushin <maemarcus at gmail.com>
> ??: moudi pascal <moudipascal at yahoo.fr>
> Cc?: WRF DA <wrfhelp at ucar.edu>; WRF User's <wrf-users at ucar.edu>;
> "wrf_users at ucar.edu" <wrf_users at ucar.edu>
> Envoy? le : Mardi 13 Septembre 2011 16h57
> Objet?: Re: [Wrf-users] WRF compilation with gfortran
>
> Hi Pascal,
>
> call random_seed (PUT=seed)
>
> Error: Size of 'put' argument of 'random_seed' intrinsic at (1) too small
> (8/12)
>
> - I met this too. Workaround is to enlarge seed variable as requested.
>
> 2011/9/13 moudi pascal <moudipascal at yahoo.fr>:
>> I am using
>> ?Linux hpz800 2.6.40.3-0.fc15.x86_64 #1 SMP Tue Aug 16 04:10:59 UTC 2011
>> x86_64 x86_64 x86_64 GNU/Linux.
>>
>> For configure, i used? option 17 (gfortran? with gcc dmpar)
>> The completion is unsuccessfull
>>
>>
>> Pascal MOUDI IGRI
>>
>> Ph-D Student
>> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
>> Department of Physics
>> Faculty of Science
>> University of Yaounde I, Cameroon
>> National Advanced Training School for Technical Education,
>> Electricity Engineering, Douala
>>
>> Tel:+237 75 32 58 52
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
>>
>
>
>

From anottrot at ucsd.edu  Fri Sep 16 13:18:32 2011
From: anottrot at ucsd.edu (Anders A Nottrott)
Date: Fri, 16 Sep 2011 12:18:32 -0700
Subject: [Wrf-users] Explanation of array dimension in module_sf_sfclay?
Message-ID: <002b01cc74a5$6f5f6390$4e1e2ab0$@ucsd.edu>

Hi All,

 

I am looking into the surface layer module for Monin-Obukhov similarity in
LES (module_sf_sfclay.F).  I wondered if someone could confirm the actual
spatial variables associated with 3D domain variables.  For example, there
is a 3 dimensional array 'U3D' containing u-velocity interpolated to theta
points, so U3D has indices (i, j, k).  For now I am working on the
assumption that these indices correspond to:

i = x-dimension

j = z-dimension

k = y-dimension

Can anyone confirm whether this is correct?

 

Regards,

Anders

 

 

Anders Nottrott

PhD Student, Mechanical and Environmental Engineering

University of California, San Diego

Department of Mechanical and Aerospace Engineering

Website: <solar.ucsd.edu/nottrott>

 

 

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From ecarlste at gmail.com  Wed Sep 14 16:29:10 2011
From: ecarlste at gmail.com (Erik Carlsten)
Date: Wed, 14 Sep 2011 16:29:10 -0600
Subject: [Wrf-users] Which WRF input data set to use for Water Vapor Mixing
 Ratio @ 15 minute intervals?
Message-ID: <CAC6Z7mBN7Xf6qREH_Xczj8K-W3v8u-67aZghwoGi7kF1Wef_Jg@mail.gmail.com>

Hi everyone,

Up until now I have been using AWIP input data as input for running WRF to
determine Water Vapor Mixing Ratio at a given altitude above Bozeman, MT. We
are trying to compare these numbers with LIDAR data we are collecting. The
problems I am having currently is that the data set I am using is not
available until 2-4 weeks after it has been collected and also that the
lowest interval time I can specify when running WPS on my current data set
is 3 hours.

If at all possible I would like to find a data set that will allow me to
determine the Water Vapor Mixing Ratio that meets the following criteria (or
at least as close as possible):

1. Data which is sampled in 15-30 minute intervals
2. The data is available within 1 week of being sampled

If anyone has any ideas on data sets which will allow us to do this which
meet these requirements or are at least closer than my current solution or
could point me in the right direction about who to talk to about this, the
help would be greatly appreciated.

Thanks all,
Erik

-- 
Erik S. Carlsten              Cell: (406) 570-1547
EPS 116                        Lab: (406) 994-6145
Montana State University
Bozeman, MT 59717

---------------------------------------------------------------
There is a single light of science, and to
brighten it anywhere is to brighten it
everywhere.
          - Isaac Asimov
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From moudipascal at yahoo.fr  Thu Sep 22 04:22:06 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Thu, 22 Sep 2011 11:22:06 +0100 (BST)
Subject: [Wrf-users] Error compiling WPP
Message-ID: <1316686926.90737.YahooMailNeo@web29010.mail.ird.yahoo.com>

Dear all,
I have compiled WRFV3.3 using intel 11.1 on fedora15. Now in want to compile WPP3.2.1 using the same compiler, but i am having this:

module_io_quilt.f90:(.text+0x105): undefined reference to `ext_gr2_ioinit_'
module_io_quilt.f90:(.text+0x1378): undefined reference to `ext_gr2_inquire_filename_'
module_io_quilt.f90:(.text+0x145b): undefined reference to `ext_gr2_open_for_write_commit_'
module_io_quilt.f90:(.text+0x1691): undefined reference to `ext_gr2_open_for_write_begin_'
module_io_quilt.f90:(.text+0x18a5): undefined reference to `ext_gr2_inquire_filename_'
module_io_quilt.f90:(.text+0x18dc): undefined reference to `ext_gr2_ioclose_'
module_io_quilt.f90:(.text+0x1c05): undefined reference to `ext_gr2_put_var_ti_char_'
module_io_quilt.f90:(.text+0x1f19): undefined reference to `ext_gr2_put_dom_ti_char_'
module_io_quilt.f90:(.text+0x2343): undefined reference to `ext_gr2_put_dom_ti_integer_'
module_io_quilt.f90:(.text+0x26d8): undefined reference to `ext_gr2_put_dom_td_integer_'
module_io_quilt.f90:(.text+0x2a61): undefined reference to `ext_gr2_put_dom_ti_real_'
module_io_quilt.f90:(.text+0x2df6): undefined reference to `ext_gr2_put_dom_td_real_'
module_io_quilt.f90:(.text+0x30fe): undefined reference to `ext_gr2_ioexit_'
/home/lemap/WRFV_3_3_INTEL/WRFV3/main/libwrflib.a(module_io_quilt.o): In function `module_wrf_quilt_mp_quilt_':
module_io_quilt.f90:(.text+0x6f39): undefined reference to `ext_gr2_ioinit_'
module_io_quilt.f90:(.text+0x85d9): undefined reference to `ext_gr2_iosync_'
module_io_quilt.f90:(.text+0x8802): undefined reference to `ext_gr2_inquire_filename_'
module_io_quilt.f90:(.text+0x88e6): undefined reference to `ext_gr2_open_for_write_commit_'
module_io_quilt.f90:(.text+0x8b69): undefined reference to `ext_gr2_open_for_write_begin_'
module_io_quilt.f90:(.text+0x8d7b): undefined reference to `ext_gr2_inquire_filename_'
module_io_quilt.f90:(.text+0x8db2): undefined reference to `ext_gr2_ioclose_'
module_io_quilt.f90:(.text+0x90ee): undefined reference to `ext_gr2_put_var_ti_char_'
module_io_quilt.f90:(.text+0x9416): undefined reference to `ext_gr2_put_dom_ti_char_'
module_io_quilt.f90:(.text+0x983d): undefined reference to `ext_gr2_put_dom_ti_integer_'
module_io_quilt.f90:(.text+0x9bc5): undefined reference to `ext_gr2_put_dom_td_integer_'
module_io_quilt.f90:(.text+0x9f41): undefined reference to `ext_gr2_put_dom_ti_real_'
module_io_quilt.f90:(.text+0xa2d3): undefined reference to `ext_gr2_put_dom_td_real_'
module_io_quilt.f90:(.text+0xa6ea): undefined reference to `ext_gr2_ioexit_'
/home/lemap/WRFV_3_3_INTEL/WRFV3/main/libwrflib.a(module_quilt_outbuf_ops.o): In function `module_quilt_outbuf_ops_mp_write_outbuf_':
module_quilt_outbuf_ops.f90:(.text+0xbc4): undefined reference to `ext_gr2_write_field_'
module_quilt_outbuf_ops.f90:(.text+0x1485): undefined reference to `ext_gr2_write_field_'
/home/lemap/WRFV_3_3_INTEL/WRFV3/external/RSL_LITE/librsl_lite.a(f_xpose.o): In function `trans_z2x_':
f_xpose.f:(.text+0x127b): undefined reference to `mpi_alltoallv_'
f_xpose.f:(.text+0x178d): undefined reference to `mpi_alltoallv_'
/home/lemap/WRFV_3_3_INTEL/WRFV3/external/RSL_LITE/librsl_lite.a(f_xpose.o): In function `trans_x2y_':
f_xpose.f:(.text+0x2bf4): undefined reference to `mpi_alltoallv_'
f_xpose.f:(.text+0x3103): undefined reference to `mpi_alltoallv_'
make[2]: Leaving directory `/home/lemap/WRFV_3_3_INTEL/WPPV3/sorc/wrfpost'
make[1]: Leaving directory `/home/lemap/WRFV_3_3_INTEL/WPPV3/sorc'
[lemap at hpz800 WPPV3]# pwd
/home/lemap/WRFV_3_3_INTEL/WPPV3
[lemap at hpz800 WPPV3]# 


someone can help to fix the problem?

Regards

?
Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From sam.hawkins at vattenfall.com  Thu Sep 22 05:02:28 2011
From: sam.hawkins at vattenfall.com (sam.hawkins at vattenfall.com)
Date: Thu, 22 Sep 2011 13:02:28 +0200
Subject: [Wrf-users] sources of SST data
Message-ID: <25EBE9C717C6244A97CC1E31BF688EFB0317CC3766@SMMABOX0744.eur.corp.vattenfall.com>

Dear WRF Users,

Can anyone give me some advice on the best source of high-resolution SST data for use in WRF in Northern Europe? Does anyone have any experience using high different SST data in WRF?

Thanks,

Sam Hawkins





From ahah at risoe.dtu.dk  Fri Sep 23 02:53:05 2011
From: ahah at risoe.dtu.dk (Hahmann, Andrea N.)
Date: Fri, 23 Sep 2011 10:53:05 +0200
Subject: [Wrf-users] sources of SST data
In-Reply-To: <25EBE9C717C6244A97CC1E31BF688EFB0317CC3766@SMMABOX0744.eur.corp.vattenfall.com>
Message-ID: <CAA2136B.45FA%ahah@risoe.dtu.dk>

Dear Sam

Do you mean for real-time runs or retrospective simulations?
For real-time runs, we have recently started using the 1/12 degree SSTs
(called rtgssthr_grb_0.083.grib2).  I was having strange issues in the
northern Baltic when using the 0.5 degree (sst2dvar_grb_0.5.grib2) data.
The data is one day behind, good enough.
The data is available from their ftp site:
ftp://ftpprd.ncep.noaa.gov/pub/data/nccf/com/gfs/prod/sst.<date>


Hope this helps,
Andrea
----
Andrea N. Hahmann
Senior Scientist
Wind Energy Division
Ris? DTU

Technical University of Denmark
Ris? National Laboratory for Sustainable Energy
Frederikborgvej 399, P.O. Box 49
4000 Roskilde, Denmark

Direct +45 4677 5471
Mobil: +45 2133 0550
ahah at risoe.dtu.dk
http://www.risoe.dtu.dk




On 9/22/11 1:02 PM, "sam.hawkins at vattenfall.com"
<sam.hawkins at vattenfall.com> wrote:

>Dear WRF Users,
>
>Can anyone give me some advice on the best source of high-resolution SST
>data for use in WRF in Northern Europe? Does anyone have any experience
>using high different SST data in WRF?
>
>Thanks,
>
>Sam Hawkins
>
>
>
>
>_______________________________________________
>Wrf-users mailing list
>Wrf-users at ucar.edu
>http://mailman.ucar.edu/mailman/listinfo/wrf-users


From albin.ullmann at u-bourgogne.fr  Fri Sep 23 02:42:14 2011
From: albin.ullmann at u-bourgogne.fr (Albin Ullmann)
Date: Fri, 23 Sep 2011 10:42:14 +0200
Subject: [Wrf-users] post-doc position
Message-ID: <20110923104214.93143dpzqp6wrzwg@webmail.u-bourgogne.fr>


Dear members,
Please find a post-doctoral position (using WRF).
Have a nice day,
Regards



-- 
Albin Ullmann
Ma?tre de conf?rence
UMR 5210 CNRS-Centre de Recherches de Climatologie
Universit? de Bourgogne, 6 Bd Gabriel, B?t. Science Gabriel
Tel: (+33) 3.80.39.38.22
Fax: (+33) 3.80.39.57.41
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From mm5user at rediffmail.com  Wed Sep 28 00:14:31 2011
From: mm5user at rediffmail.com (mm5user)
Date: 28 Sep 2011 06:14:31 -0000
Subject: [Wrf-users] =?utf-8?q?WRF-chem_compilation_Error?=
Message-ID: <20110928061431.31328.qmail@f6mail-145-156.rediffmail.com>




	
	
	
	
	
	
	
	


Dear All 

I am new to WRF chem. 

I could configure and compile WRFV3, WPS on IBM AIX machin. (all WRF version 3.2)



	
	
	
	
	
	
	
	

After downloading and unpacking WRF
Chem (WRFV3-Chem-3.0.1.TAR) in WRFV3, and setting the environment variables (WRF EM CORE = 1, WRF CHEM =
1) I recompiled WRFV3 em_real and obtained the following error:--------------------------------------------------------------------------------------------------------------------------------
&nbsp;ranlib libwrflib.a
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; timex mpxlf90_r -o wrf.exe&nbsp; -O3&nbsp; -w -qspill=20000 -qmaxmem=32767 -qfree=f90&nbsp;&nbsp;&nbsp;&nbsp; -lmass -lmassv&nbsp; wrf.o ../main/module_wrf_top.o libwrflib.a /--WRFdir--/WRFV3/external/fftpack/fftpack5/libfftpack.a&nbsp; /--WRFdir--/WRFV3/external/io_grib1/libio_grib1.a&nbsp; /--WRFdir--/WRFV3/external/io_grib_share/libio_grib_shar
e.a&nbsp; /--WRFdir--/WRFV3/external/io_int/libwrfio_int.a&nbsp; /--WRFdir--/WRFV3/external/esmf_time_f90/libesmf_time.a&nbsp; /--WRFdir--/WRFV3/external/RSL_LITE/librsl_lite.a&nbsp; /--WRFdir--/WRFV3/frame/module_internal_header_util.o&nbsp; /--WRFdir--/WRFV3/frame/pack_utils.o&nbsp; /--WRFdir--/WRFV3/external/io_netcdf/libwrfio_nf.a -L/--NETCDFdir--/netcdf/lib&nbsp; -lnetcdf

ld: 0711-224 WARNING: Duplicate symbol: .logf
ld: 0711-224 WARNING: Duplicate symbol: .log1pf
ld: 0711-224 WARNING: Duplicate symbol: .log10f
ld: 0711-224 WARNING: Duplicate symbol: .lgammaf
ld: 0711-224 WARNING: Duplicate symbol: .hypotf
ld: 0711-224 WARNING: Duplicate symbol: .expm1f
ld: 0711-224 WARNING: Duplicate symbol: .expf
ld: 0711-224 WARNING: Duplicate symbol: .erff
ld: 0711-224 WARNING: Duplicate symbol: .erfcf
ld: 0711-224 WARNING: Duplicate symbol: .coshf
ld: 0711-224 WARNING: Duplicate symbol: .cosf
ld: 0711-224 WARNING: Duplicate symbol: .copysignf
ld: 0711-224 WARNING: Duplicate symbol: .cbrtf
ld: 0711-224 WARNING: Duplicate symbol: .atanhf
ld: 0711-224 WARNING: Duplicate symbol: .atanf
ld: 0711-224 WARNING: Duplicate symbol: .atan2f
ld: 0711-224 WARNING: Duplicate symbol: .asinhf
ld: 0711-224 WARNING: Duplicate symbol: .asinf
ld: 0711-224 WARNING: Duplicate symbol: .acoshf
ld: 0711-224 WARNING: Duplicate symbol: .acosf
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more information.
ld: 0711-317 ERROR: Undefined symbol: .start_domain_em
ld: 0711-317 ERROR: Undefined symbol: .solve_em
ld: 0711-317 ERROR: Undefined symbol: .chem_driver

make: 1254-004 The error code from the last command is 8.
make: 1254-005 Ignored error code 8 from last command.
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )------------------------------------------------------------------------------------------------------------------------------only&nbsp; tc.exe is created in /main/There is no any problem when i compile WRFV3 without chem. All *.exe are created in main. But the problem comes when i compile WRFV3 with chem.
How to solve this issuePlease Help me out in this regardThanksmm5user


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From mmkamal at uwaterloo.ca  Sun Sep 25 17:16:57 2011
From: mmkamal at uwaterloo.ca (mmkamal at uwaterloo.ca)
Date: Sun, 25 Sep 2011 19:16:57 -0400
Subject: [Wrf-users] run_wrfpost is not processing more than one day
Message-ID: <20110925191657.53455e7uyle65ksg@www.nexusmail.uwaterloo.ca>

Hi,

I have been trying to convert my WRF history file into GRIB format  
using WPP but "run_wrfpost" stop after converting one days although my  
history file contain one year output. I have modified my "run_wrfpost"  
based on the "run_wrfpost_frames". Could any one please help me to  
overcome this problem.

Thanks in advance
Kamal

======================================================
run_wrfpost
======================================================
#!/bin/ksh
#
set -x

# August 2005: Hui-Ya Chuang, NCEP: This script uses
# NCEP's WRF-POSTPROC to post processes WRF native model
# output, and uses copygb to horizontally interpolate posted
# output from native A-E to a regular projection grid.
#
# July 2006: Meral Demirtas, NCAR/DTC: Added new "copygb"
# options and revised some parts for clarity.
#
#--------------------------------------------------------
# This script performs 2 jobs:
#
# 1. Run WRF-POSTPROC
# 2. Run copygb to horizontally interpolate output from
# native A-E to a regular projection grid
#--------------------------------------------------------

# Set path to your top directory and your run dorectory
#

export TOP_DIR=/scratch/mkamal/WRF_new
export DOMAINPATH=${TOP_DIR}/DOMAINS

#Specify Dyn Core (ARW or NMM in upper case)
dyncore="ARW"

if [ $dyncore = "NMM" ]; then
export tag=NMM
elif [ $dyncore = "ARW" ]; then
export tag=NCAR
else
echo "${dyncore} is not supported. Edit script to choose ARW or NMM dyncore."
exit
fi

# Specify forecast start date
# fhr is the first forecast hour to be post-processed
# lastfhr is the last forecast hour to be post-processed
# incrementhr is the incement (in hours) between forecast files

export startdate=2004010200
export fhr=00
export lastfhr=21
export incrementhr=03

# Path names for WRF_POSTPROC and WRFV3

export WRF_POSTPROC_HOME=${TOP_DIR}/WPPV3
export POSTEXEC=${WRF_POSTPROC_HOME}/exec
export SCRIPTS=${WRF_POSTPROC_HOME}/scripts
export WRFPATH=${TOP_DIR}/WRFV3

# cd to working directory
cd ${DOMAINPATH}/postprd

# Link Ferrier's microphysic's table and WRF-POSTPROC control file,

ln -fs ${WRFPATH}/run/ETAMPNEW_DATA eta_micro_lookup.dat
ln -fs ${DOMAINPATH}/parm/wrf_cntrl.parm .

export tmmark=tm00
export MP_SHARED_MEMORY=yes
export MP_LABELIO=yes

#######################################################
# 1. Run WRF-POSTPROC
#
# The WRF-POSTPROC is used to read native WRF model
# output and put out isobaric state fields and derived fields.
#
#######################################################

pwd
ls -x

export NEWDATE=$startdate

YYi=`echo $NEWDATE | cut -c1-4`
MMi=`echo $NEWDATE | cut -c5-6`
DDi=`echo $NEWDATE | cut -c7-8`
HHi=`echo $NEWDATE | cut -c9-10`

while [ $fhr -le $lastfhr ] ; do

typeset -Z3 fhr

NEWDATE=`${POSTEXEC}/ndate.exe +${fhr} $startdate`

YY=`echo $NEWDATE | cut -c1-4`
MM=`echo $NEWDATE | cut -c5-6`
DD=`echo $NEWDATE | cut -c7-8`
HH=`echo $NEWDATE | cut -c9-10`

echo 'NEWDATE' $NEWDATE
echo 'YY' $YY#for domain in d01 d02 d03
for domain in d01
do

cat > itag <<EOF
../wrfprd/wrfout_${domain}_${YYi}-${MMi}-${DDi}_${HHi}:00:00
netcdf
${YY}-${MM}-${DD}_${HH}:00:00
${tag}
EOF

#-----------------------------------------------------------------------
# Run wrfpost.
#-----------------------------------------------------------------------
rm fort.*

ln -sf wrf_cntrl.parm fort.14
ln -sf griddef.out fort.110
${POSTEXEC}/wrfpost.exe < itag > wrfpost_${domain}.$fhr.out 2>&1

mv WRFPRS$fhr.tm00 WRFPRS_${domain}.${fhr}

#
#----------------------------------------------------------------------
# End of wrf post job
#----------------------------------------------------------------------

ls -l WRFPRS_${domain}.${fhr}
err1=$?

if test "$err1" -ne 0
then

echo 'WRF POST FAILED, EXITTING'
exit

fi

if [ $dyncore = "NMM" ]; then
#######################################################################
# 2. Run copygb
#
# Copygb interpolates WRF-POSTPROC output from its native
# grid to a regular projection grid. The package copygb
# is used to horizontally interpolate from one domain
# to another, it is necessary to run this step for wrf-nmm
# (but not for wrf-arw) because wrf-nmm's computational
# domain is on rotated Arakawa-E grid
#
# Copygb can be run in 3 ways as explained below.
# Uncomment the preferable one.
#
#----------------------------------------------------------------------
#
# Option 1:
# Copygb is run with a pre-defined AWIPS grid
# (variable $gridno, see below) Specify the grid to
# interpolate the forecast onto. To use standard AWIPS grids
# (list in http://wwwt.emc.ncep.noaa.gov/mmb/namgrids/ or
# or http://www.nco.ncep.noaa.gov/pmb/docs/on388/tableb.html),
# set the number of the grid in variable gridno below.
# To use a user defined grid, see explanation above copygb.exe command.
#
# export gridno=212
#
#${POSTEXEC}/copygb.exe -xg${gridno} WRFPRS_${domain}.${fhr}  
wrfprs_${domain}.${fhr}
#
#----------------------------------------------------------------------
#
# Option 2:
# Copygb ingests a kgds definition on the command line.
#${POSTEXEC}/copygb.exe -xg"255 3 109 91 37748 -77613 8 -71000 10379  
9900 0 64 42000 42000" WRFPRS_${domain}.${fhr} wrfprs_${domain}.${fhr}
#
#----------------------------------------------------------------------
#
# Option 3:
# Copygb can ingests contents of files too. For example:
# copygb_gridnav.txt or copygb_hwrf.txt through variable $nav.
#
# Option -3.1:
# To run for "Lambert Comformal map projection" uncomment the following line
#
read nav < 'copygb_gridnav.txt'
#
# Option -3.2:
# To run for "lat-lon" uncomment the following line
#
#read nav < 'copygb_hwrf.txt'
#
export nav
#
${POSTEXEC}/copygb.exe -xg"${nav}" WRFPRS_${domain}.${fhr}  
wrfprs_${domain}.${fhr}
#
# (For more info on "copygb" see WRF-NMM User's Guide, Chapter-7.)
#----------------------------------------------------------------------

# Check to see whether "copygb" created the requested file.

ls -l wrfprs_${domain}.${fhr}
err1=$?

if test "$err1" -ne 0
then

echo 'copygb FAILED, EXITTING'
exit

fi

#----------------------------------------------------------------------
# End of copygb job
#----------------------------------------------------------------------

elif [ $dyncore = "ARW" ]; then
ln -s WRFPRS_${domain}.${fhr} wrfprs_${domain}.${fhr}
fi

done

let "fhr=fhr+$incrementhr"


NEWDATE=`${POSTEXEC}/ndate.exe +${fhr} $startdate`

done

date
echo "End of Output Job"
exit









From oholo at iibr.gov.il  Tue Sep 27 02:19:50 2011
From: oholo at iibr.gov.il (Oholo)
Date: Tue, 27 Sep 2011 11:19:50 +0300
Subject: [Wrf-users] =?windows-1255?q?=FE=FEFW=3A_48th_Oholo_Conference_?=
	=?windows-1255?q?=96_=22Emerging_Remote_Sensing_Techniques_and_Ass?=
	=?windows-1255?q?ociated_Modeling_for_Air_Pollution_Applications?=
	=?windows-1255?q?=22_=96_Eilat=2C_Israel_=96_November_6-10=2C_2011?=
In-Reply-To: <D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BD5@iibr-mail-2007>
References: <D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BBC@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BC4@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BC5@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BC6@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BC7@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BC8@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BC9@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BCB@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BCC@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BCD@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BCE@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BD2@iibr-mail-2007>,
	<D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BD5@iibr-mail-2007>
Message-ID: <D03FFBBF6E979C4C8CDC8BF2FBC57E640D67594BD6@iibr-mail-2007>

Dear Colleague,

Subject: 48th Oholo Conference ? "Emerging Remote Sensing Techniques and Associated Modeling for Air Pollution Applications" ? Eilat, Israel ? November 6-10, 2011

We would like to take this opportunity to remind you that the deadline for early registration rate is nearing ? September 30, 2011.

In order to register please enter our website ? www.oholoconference.com<http://www.oholoconference.com/>

In the event of any difficulties please do not hesitate to contact me.

Thank you for your kind attention.

Sincerely yours,

Ariella Raz


Ariella Raz

Secretariat,

48th Oholo Conference



Tel: 972-8-9381656

Fax: 972-8-9401404

Email: oholo at iibr.gov.il<mailto:oholo at iibr.gov.il>
**********************************************************************************************
IMPORTANT: The contents of this email and any attachments are confidential. They are intended for the 
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If you have received this email in error, please notify the system manager or the sender immediately and do 
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From preeti at csa.iisc.ernet.in  Wed Sep 28 02:45:27 2011
From: preeti at csa.iisc.ernet.in (Preeti)
Date: Wed, 28 Sep 2011 14:15:27 +0530
Subject: [Wrf-users] Absolute vorticity
Message-ID: <CA+agzKm253wfVVwQP8brApTgLUjngAAM=2WYvgqZLXH2kO7ofg@mail.gmail.com>

Hello

I want to get "Absolute vorticity" as one of the variables in the WRF output
files. Is this possible? If yes, can someone please tell me what are the
steps I need to follow?

Thanks in advance
Preeti
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From anottrot at ucsd.edu  Wed Sep 28 11:18:24 2011
From: anottrot at ucsd.edu (Anders A Nottrott)
Date: Wed, 28 Sep 2011 10:18:24 -0700
Subject: [Wrf-users] Unusual Velocity Spectra in Ideal LES w/ Wind
Message-ID: <003101cc7e02$a1a87d30$e4f97790$@ucsd.edu>

Hello All,

 

I'm running some simple ideal LES simulations of the neutral ABL forced with
10 m/s geostrophic wind.  In validating vertical profiles the mean wind,
velocity variance and momentum flux profiles agree well with other LES and
experimental data.  However, the velocity spectra begin to "roll-off" at
unusually low wavenumbers, i.e. there is too much energy content at the
highest wavenumbers (see the plots in the attached PDF).  A comparison with
Mirocha et al. (2010) indicates that this is not typical of WRF-LES.

 

In an attempt to diagnose the problem I have tried increasing vertical
resolution, 3 different SGS models (3D Smagorinsky, NBA-Stress, NBA-TKE) and
simulations with and without a capping inversion, but the results are
similar each time.  This leads me to believe that the problem is related to
one or more poorly selected options for numerics and as a result unphysical
high frequency waves are generated in the domain.

 

Note that I am using the 'em_les' test case as the basis for my runs so I
have 5th order RK3 in the horizontal and 3rd order RK3 in the vertical.  I
have set the acoustic timestep to be calculated automatically (i.e. namelist
variable 'time_step_sound=0').  It is worth noting that in purely convective
simulations (no background wind) the velocity and temperature spectra look
fine, so this is more evidence pointing to a problem with the advection
scheme/numerics.

 

Has anyone else experienced this problem?  Any comments or suggestions will
be very helpful and most appreciated.

 

Regards,

 

Anders

 

 

Anders Nottrott

PhD Student, Mechanical and Environmental Engineering

University of California, San Diego

Department of Mechanical and Aerospace Engineering

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From jaareval at gmail.com  Wed Sep 28 12:38:53 2011
From: jaareval at gmail.com (Jorge Alejandro Arevalo Borquez)
Date: Wed, 28 Sep 2011 14:38:53 -0400
Subject: [Wrf-users] WRF Tutorial in Chile - January 2012
Message-ID: <CAGTKt-5gado4ZQ+104JaY0UZs6TqZKg6NHm4jBUJXdrH9wA4DQ@mail.gmail.com>

Dear WRF Users, The Laboratory for Atmospherical Modelling of Meteorology
Department of Universidad de Valpara?so (Chile) will be really greatful if
you could distribute the announcement of our third summer course
"Introducci?n a la Modelaci?n Atmosf?rica - Uso de WRF" will focuses on
basic use and description of WRF-ARW for real cases. This course will be
offered in spanish language at dependences of Universidad de Valpara?so,
Valpara?so, Chile.

More information is available in attached document and at course website:
http://www.meteo.uv.cl/ima

Atentamente
> Jorge Ar?valo B?rquez
> Coordinador LMA-UV
> Departamento de Meteorolog?a
> Universidad de Valpara?so

56-32-2508700
>
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From dennisl at u.washington.edu  Thu Sep 29 13:55:55 2011
From: dennisl at u.washington.edu (Dennis Lettenmaier)
Date: Thu, 29 Sep 2011 12:55:55 -0700
Subject: [Wrf-users] =?windows-1252?q?Postdoc_=96_Regional_climate_and_lan?=
 =?windows-1252?q?d_surface_modeling?=
Message-ID: <4E84CD4B.8060705@u.washington.edu>

The University of Washington Department of Civil and Environmental 
Engineering seeks a postdoctoral researcher to participate in 
development of the land portion of the DOE-funded Regional Arctic System 
Model.  The project involves coupling the Variable Infiltration Capacity 
(VIC) model with the WRF regional climate model (and ocean and sea ice 
models) through the CCSM/CESM flux coupler.  Experience in land surface 
model development and regional climate modeling, including diagnosis of 
coupled model simulations, is desirable, as is experience in handling 
large data sets ? e.g., remote sensing, gridded in situ observations, 
and multivariate spatial model output.  Proficiency in the C programming 
language and Unix experience is essential, as are strong written and 
oral communications skills in English.  A Ph.D. in hydrology or a 
closely related field is required.  Salary DOE.  Email vitae and a short 
statement of relevant experience to Professor Dennis P. Lettenmaier, 
dennisl at u.washington.edu <mailto:dennisl at u.washington.edu>.  AA/EOE.

From moudipascal at yahoo.fr  Sun Oct  9 02:00:23 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Sun, 9 Oct 2011 09:00:23 +0100 (BST)
Subject: [Wrf-users] Explanation of Backgroung Errors Statistics plots
Message-ID: <1318147223.45954.YahooMailNeo@web29002.mail.ird.yahoo.com>

Dear All,
I have generated BES for my own domain using NMC method.
When i use gen_be_wrapper_plot.ksh to generate plot, i am unable to explain and? understand what these plots mean.
I would like to know: what physically mean variable control, eigenvector and lengthscale?
Please finf attached the figures i produced and please provide me some explanations

?
Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From ebeigi3 at tigers.lsu.edu  Sun Oct  9 16:06:25 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Sun, 9 Oct 2011 18:06:25 -0400
Subject: [Wrf-users] cam2wrf
Message-ID: <CADwy=LLOYACDuY775Hzb4oDYdNBKtpNoAbB86q83B+Lh4gHCXw@mail.gmail.com>

Dear Friends,

Does anyone have a code that converts CCSM output to intermediate format of
WPS (except the cam2wrf provided by NCAR )? Thanks in advance.


Best Regards,

-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From Don.Morton at alaska.edu  Mon Oct 10 18:13:05 2011
From: Don.Morton at alaska.edu (Don Morton)
Date: Mon, 10 Oct 2011 16:13:05 -0800
Subject: [Wrf-users] 2012 Alaska Weather Symposium
Message-ID: <CACGgDT31tfyHLSikN+5Hxz+TLVqibc1=4=N27k_Q98co-0A4ug@mail.gmail.com>

The 2012 Alaska Weather Symposium (AWS '12)
13-14 March 2012
University of Alaska Fairbanks

Preliminary Announcement and Call for Abstracts

Symposium Web Page:
http://weather.arsc.edu/Events/AWS12/<http://weather.arsc.edu/Events/AWS11/AWS-2011-Flyer.pdf>

The following sponsors (listed alphabetically)

   - Alaska Region, NOAA National Weather Service
   - Arctic Region Supercomputing Center (UAF)
   - Department of Atmospheric Sciences (College of Natural Science and
   Mathematics, UAF)
   - Geophysical Institute (UAF)
   - International Arctic Research Center (UAF)



invite you to attend the 2012 Alaska Weather Symposium.  The
symposiumprovides a forum for the exchange of operational and research
information
related to weather in the Alaska environment. Participation from academic,
research, government, military, and private sectors is encouraged.

Anticipated areas of focus are

   - Air quality
   - Data assimilation
   - High resolution modeling in complex terrain
   - Observations / monitoring challenges



However, as usual, all abstracts relating to weather in Alaska are welcome

--Schedule/Venue--
This will be a two-day symposium held at the University of Alaska Fairbanks
campus on Tuesday and Wednesday, 13-14 March 2012.  Snacks will be provided
and evening meals will be on-your-own, with an organized evening out (pay on
your own) at a local establishment.

--Abstract Submission--
The deadline for one-paragraph abstracts for a 15-20 minute presentation is
Tuesday, 24 January 2012.  See the symposium web page for abstract
submission procedures.

--Registration--
Registration is required by Tuesday, 06 March 2012.  See thes ymposium web
page for registration instructions.  There is no registration fee.


Symposium Web Page: http://weather.arsc.edu/Events/AWS12/

-- 
Voice:  907 450 8679
Arctic Region Supercomputing Center
http://weather.arsc.edu/
http://people.arsc.edu/~morton/ <http://www.arsc.edu/%7Emorton/>
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From aijun at email.unc.edu  Sat Oct 15 22:24:13 2011
From: aijun at email.unc.edu (Xiu, Aijun)
Date: Sun, 16 Oct 2011 04:24:13 +0000
Subject: [Wrf-users] cam2wrf code
Message-ID: <CABFD4AD.89E0%aijun@email.unc.edu>

Hi,
  Does anyone have a updated CAM2WRF code that can deal with CCSM4 output files? If so, can you share the code with me? Thanks!
Aijun
--
Thanks!
Aijun
---------------------------------------------------------------------
Aijun Xiu, PhD, Research Associate Professor Phone: 919-966-2064
Institute for the Environment                 Fax: 919-843-3113
University of North Carolina at Chapel Hill Email: aijun at email.unc.edu
Bank of America Plaza, CB# 6116
137 E. Franklin St., Room 657
Chapel Hill, NC 27599-6116
---------------------------------------------------------------------
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From aruny at iitk.ac.in  Tue Oct 11 04:18:14 2011
From: aruny at iitk.ac.in (Arun Yadav)
Date: Tue, 11 Oct 2011 15:48:14 +0530
Subject: [Wrf-users] Edit WRF-Chem input file
Message-ID: <4E9417E6.5030401@iitk.ac.in>

Hi,
I want to edit the input files prepared by prep_chem_sources for 
WRF-Chem by either changing the emissions file itself or changing the 
code of Prep_chem_sources to do this for me. I need it to make some 
hypothetical scenarios run on WRF-Chem. Is it possible to do so?

Regards,
Arun

From shankhabanerjee at gmail.com  Sun Oct 16 08:41:13 2011
From: shankhabanerjee at gmail.com (shankha)
Date: Sun, 16 Oct 2011 10:41:13 -0400
Subject: [Wrf-users] wrf fails to run : build with OpenMPI
Message-ID: <CAO_L6qFa1j_jxxLH0wzuRn1WpARa3wM7wv=NeP65Vuathi3_SQ@mail.gmail.com>

Hi,
Machine Information : Linux bertram 2.6.32-33-generic #72-Ubuntu SMP Fri Jul
29 21:07:13 UTC 2011 x86_64 GNU/Linux
Compiler : 4.4.3.
MPI : OpenMPI 1.4.3

I am unable to run wrf.exe with mpirun. I am able to run wrf.exe stand alone

bertram : ~ ] mpirun -np 2 ./wrf.exe
--------------------------------------------------------------------------
mpirun has exited due to process rank 0 with PID 7061 on
node bertram exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------

I have checked my MPI installation and it is good. ldd didn't report any
missing libraries or errors.

Thanks for your help.
-- 
Thanks
Shankha
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None of WRF_EM_CORE, WRF_NMM_CORE, 
        specified in shell environment.... 
copying Registry/Registry.EM to Registry/Registry
 
Compiling: WRF_EM_CORE .
 
setting parallel make -j 2
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" ext
make[1]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
--------------------------------------
( cd frame ; make -i -r externals )
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/ioapi_share ; \
          make -i -r NATIVE_RWORDSIZE="4" RWORDSIZE="4" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/ioapi_share'
( /bin/rm -f ../../inc/wrf_io_flags.h foo_io_flags.h; \
	/bin/cp wrf_io_flags.h foo_io_flags.h; \
	if [ 4 -ne 4 ] ; then \
	  /bin/rm -f foo_io_flags.h; \
	  sed -e 's/104/105/' wrf_io_flags.h > foo_io_flags.h ;\
	fi ; \
	/bin/mv foo_io_flags.h ../../inc/wrf_io_flags.h )
/bin/rm -f ../../inc/wrf_status_codes.h
/bin/cp wrf_status_codes.h ../../inc
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/ioapi_share'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib_share ; \
          make CC="gcc" CFLAGS="-w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25" RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -C -P" \
          FC="gfortran  -I.  -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  " TRADFLAG="-traditional" AR="ar" ARFLAGS="ru" archive) 
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib_share'
make[4]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib_share'
rm -f io_grib_share.o
/lib/cpp -C -P  -traditional  -I. io_grib_share.F > io_grib_share.f90
gfortran  -I.  -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4     -I.     -c io_grib_share.f90
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c get_region_center.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gridnav.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c open_file.c
ar ru ./libio_grib_share.a io_grib_share.o get_region_center.o gridnav.o open_file.o
ar: creating ./libio_grib_share.a
ranlib ./libio_grib_share.a
make[4]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib_share'
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib_share'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1 ; \
          make CC="gcc" CFLAGS="-w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25" RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -C -P" \
          FC="gfortran  -I.  -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  " TRADFLAG="-traditional" AR="ar" ARFLAGS="ru" archive)
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1'
        Doing make archive on library subdirectory MEL_grib1
make[4]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/MEL_grib1'
make[5]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/MEL_grib1'
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c FTP_getfile.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c apply_bitmap.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c display_gribhdr.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gbyte.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c grib_dec.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c grib_enc.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c grib_seek.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribgetbds.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribgetbms.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribgetgds.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribgetpds.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribhdr2file.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribputbds.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribputgds.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribputpds.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c hdr_print.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c init_dec_struct.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c init_enc_struct.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c init_gribhdr.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c init_struct.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c ld_dec_lookup.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c ld_enc_input.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c ld_enc_lookup.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c ld_grib_origctrs.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c make_default_grbfn.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c make_grib_log.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c map_lvl.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c map_parm.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c pack_spatial.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c prt_inp_struct.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c upd_child_errmsg.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c prt_badmsg.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c swap.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c grib_uthin.c
gcc  -I. -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c set_bytes.c
ar ru ../libio_grib1.a FTP_getfile.o apply_bitmap.o display_gribhdr.o gbyte.o grib_dec.o grib_enc.o grib_seek.o gribgetbds.o gribgetbms.o gribgetgds.o gribgetpds.o gribhdr2file.o gribputbds.o gribputgds.o gribputpds.o hdr_print.o init_dec_struct.o init_enc_struct.o init_gribhdr.o init_struct.o ld_dec_lookup.o ld_enc_input.o ld_enc_lookup.o ld_grib_origctrs.o make_default_grbfn.o make_grib_log.o map_lvl.o map_parm.o pack_spatial.o prt_inp_struct.o upd_child_errmsg.o prt_badmsg.o swap.o grib_uthin.o set_bytes.o
ar: creating ../libio_grib1.a
ranlib ../libio_grib1.a
make[5]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/MEL_grib1'
make[4]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/MEL_grib1'
        Doing make archive on library subdirectory grib1_util
make[4]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/grib1_util'
make[5]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/grib1_util'
gcc  -I. -I../MEL_grib1 -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c alloc_2d.c
gcc  -I. -I../MEL_grib1 -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c read_grib.c
gcc  -I. -I../MEL_grib1 -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c write_grib.c
ar ru ../libio_grib1.a alloc_2d.o read_grib.o write_grib.o
ranlib ../libio_grib1.a
make[5]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/grib1_util'
make[4]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/grib1_util'
        Doing make archive on library subdirectory WGRIB
make[4]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/WGRIB'
gcc -c -O wgrib_main.c
gcc -c -O seekgrib.c
gcc -c -O ibm2flt.c
gcc -c -O readgrib.c
gcc -c -O intpower.c
gcc -c -O cnames.c
gcc -c -O BDSunpk.c
gcc -c -O flt2ieee.c
gcc -c -O wrtieee.c
gcc -c -O levels.c
gcc -c -O PDStimes.c
gcc -c -O missing.c
gcc -c -O nceptable_reanal.c
gcc -c -O nceptable_opn.c
gcc -c -O ensemble.c
gcc -c -O ombtable.c
gcc -c -O ec_ext.c
gcc -c -O gribtable.c
gcc -c -O gds_grid.c
gcc -c -O PDS_date.c
gcc -c -O ectable_128.c
gcc -c -O ectable_129.c
gcc -c -O ectable_130.c
gcc -c -O ectable_131.c
gcc -c -O ectable_140.c
gcc -c -O ectable_150.c
gcc -c -O ectable_151.c
gcc -c -O ectable_160.c
gcc -c -O ectable_170.c
gcc -c -O ectable_180.c
gcc -c -O nceptab_129.c
gcc -c -O dwdtable_002.c
gcc -c -O dwdtable_201.c
gcc -c -O dwdtable_202.c
gcc -c -O dwdtable_203.c
gcc -c -O cptectable_254.c
gcc -c -O nceptab_130.c
gcc -c -O nceptab_131.c
gcc -o wgrib.exe wgrib_main.o seekgrib.o ibm2flt.o readgrib.o intpower.o cnames.o BDSunpk.o flt2ieee.o wrtieee.o levels.o PDStimes.o missing.o nceptable_reanal.o nceptable_opn.o ensemble.o ombtable.o ec_ext.o gribtable.o gds_grid.o PDS_date.o ectable_128.o ectable_129.o ectable_130.o ectable_131.o ectable_140.o ectable_150.o ectable_151.o ectable_160.o ectable_170.o ectable_180.o nceptab_129.o dwdtable_002.o dwdtable_201.o dwdtable_202.o dwdtable_203.o cptectable_254.o nceptab_130.o nceptab_131.o #-lm
( cd .. ; \rm -f wgrib.exe ; \ln -sf WGRIB/wgrib.exe wgrib.exe ; cd WGRIB )
make[4]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/WGRIB'
make[4]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1'
gcc  -I. -I./MEL_grib1 -Igrib1_util -I../io_grib_share -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c grib1_routines.c
gcc  -I. -I./MEL_grib1 -Igrib1_util -I../io_grib_share -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c gribmap.c
rm -f io_grib1.o
/lib/cpp -C -P  -traditional  -I. -I./MEL_grib1 -Igrib1_util -I../io_grib_share io_grib1.F > io_grib1.f90
gfortran  -I.  -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4     -I. -I./MEL_grib1 -Igrib1_util -I../io_grib_share     -c io_grib1.f90
gcc  -I. -I./MEL_grib1 -Igrib1_util -I../io_grib_share -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25   -c trim.c
ar ru ./libio_grib1.a grib1_routines.o gribmap.o io_grib1.o trim.o
ranlib ./libio_grib1.a
make[4]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1'
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int ; \
          make CC="mpicc -DMPI2_SUPPORT -DFSEEKO64_OK " RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -C -P" \
          FC="gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " FGREP="fgrep -iq" \
          TRADFLAG="-traditional" AR="ar" ARFLAGS="ru" ARCHFLAGS="-DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0" all )
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int'
cp ../../frame/module_internal_header_util.F module_internal_header_util.b
cp ../../inc/intio_tags.h intio_tags.h
/bin/rm -f module_internal_header_util.f
/lib/cpp -C -P -traditional  -I../ioapi_share module_internal_header_util.b > module_internal_header_util.f
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I. -o module_internal_header_util.o -c module_internal_header_util.f
/bin/rm -f module_internal_header_util.b
/lib/cpp -C -P -traditional  -I../ioapi_share io_int.F90 | m4 -Uinclude -Uindex -Ulen - > io_int.f
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I. -I../ioapi_share -o io_int.o -c io_int.f
/bin/rm -f intio_tags.h
/bin/rm -f libwrfio_int.a
ar cr libwrfio_int.a io_int.o 
ranlib libwrfio_int.a
Diffwrf io_int will be built later on in this compile. No need to rerun compile. 
Diffwrf io_int will be built later on in this compile. No need to rerun compile. 
Diffwrf io_int will be built later on in this compile. No need to rerun compile. 
Diffwrf io_int will be built later on in this compile. No need to rerun compile. 
if [ -f ../../frame/pack_utils.o ] ; then \
			mv diffwrf.F diffwrf.F90    ; \
                        x=`echo "gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " | awk '{print $1}'` ; export x ; \
                        if [ $x = "gfortran" ] ; then \
                          echo removing external declaration of iargc for gfortran ; \
			  /lib/cpp -C -P -traditional  -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f  ; \
                        else \
			  /lib/cpp -C -P -traditional  -I../ioapi_share diffwrf.F90 > diffwrf.f  ; \
                        fi ; \
			gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -c  -I../ioapi_share diffwrf.f    ; \
			mv diffwrf.F90 diffwrf.F ; \
			gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    -o diffwrf diffwrf.o io_int.o  \
                        ../../frame/pack_utils.o ../../frame/module_internal_header_util.o \
                        ../../frame/module_driver_constants.o \
			../../frame/module_machine.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o \
			 ; fi
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90 ; \
          make FC="gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " RANLIB="ranlib" \
          CPP="/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90'
/bin/rm -f ESMF_Base.o
sed -e "/\!.*'/s/'//g" ESMF_Base.F90 > ESMF_Base.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Base.b > ESMF_Base.f
/bin/rm -f ESMF_Base.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Base.o -c ESMF_Base.f
/bin/rm -f ESMF_BaseTime.o
sed -e "/\!.*'/s/'//g" ESMF_BaseTime.F90 > ESMF_BaseTime.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_BaseTime.b > ESMF_BaseTime.f
/bin/rm -f ESMF_BaseTime.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_BaseTime.o -c ESMF_BaseTime.f
/bin/rm -f ESMF_Calendar.o
sed -e "/\!.*'/s/'//g" ESMF_Calendar.F90 > ESMF_Calendar.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Calendar.b > ESMF_Calendar.f
/bin/rm -f ESMF_Calendar.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Calendar.o -c ESMF_Calendar.f
/bin/rm -f ESMF_Fraction.o
sed -e "/\!.*'/s/'//g" ESMF_Fraction.F90 > ESMF_Fraction.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Fraction.b > ESMF_Fraction.f
/bin/rm -f ESMF_Fraction.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Fraction.o -c ESMF_Fraction.f
/bin/rm -f ESMF_TimeInterval.o
sed -e "/\!.*'/s/'//g" ESMF_TimeInterval.F90 > ESMF_TimeInterval.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_TimeInterval.b > ESMF_TimeInterval.f
/bin/rm -f ESMF_TimeInterval.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_TimeInterval.o -c ESMF_TimeInterval.f
/bin/rm -f ESMF_Stubs.o
sed -e "/\!.*'/s/'//g" ESMF_Stubs.F90 > ESMF_Stubs.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Stubs.b > ESMF_Stubs.f
/bin/rm -f ESMF_Stubs.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Stubs.o -c ESMF_Stubs.f
/bin/rm -f ESMF_Time.o
sed -e "/\!.*'/s/'//g" ESMF_Time.F90 > ESMF_Time.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Time.b > ESMF_Time.f
/bin/rm -f ESMF_Time.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Time.o -c ESMF_Time.f
/bin/rm -f ESMF_Alarm.o
sed -e "/\!.*'/s/'//g" ESMF_Alarm.F90 > ESMF_Alarm.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Alarm.b > ESMF_Alarm.f
/bin/rm -f ESMF_Alarm.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Alarm.o -c ESMF_Alarm.f
/bin/rm -f ESMF_Clock.o
sed -e "/\!.*'/s/'//g" ESMF_Clock.F90 > ESMF_Clock.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Clock.b > ESMF_Clock.f
/bin/rm -f ESMF_Clock.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Clock.o -c ESMF_Clock.f
/bin/rm -f Meat.o
sed -e "/\!.*'/s/'//g" Meat.F90 > Meat.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. Meat.b > Meat.f
/bin/rm -f Meat.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o Meat.o -c Meat.f
/bin/rm -f ESMF_AlarmClock.o
sed -e "/\!.*'/s/'//g" ESMF_AlarmClock.F90 > ESMF_AlarmClock.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_AlarmClock.b > ESMF_AlarmClock.f
/bin/rm -f ESMF_AlarmClock.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_AlarmClock.o -c ESMF_AlarmClock.f
/bin/rm -f ESMF_Mod.o
sed -e "/\!.*'/s/'//g" ESMF_Mod.F90 > ESMF_Mod.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. ESMF_Mod.b > ESMF_Mod.f
/bin/rm -f ESMF_Mod.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o ESMF_Mod.o -c ESMF_Mod.f
/bin/rm -f module_symbols_util.o
sed -e "/\!.*'/s/'//g" module_symbols_util.F90 > module_symbols_util.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. module_symbols_util.b > module_symbols_util.f
/bin/rm -f module_symbols_util.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o module_symbols_util.o -c module_symbols_util.f
/bin/rm -f module_utility.o
sed -e "/\!.*'/s/'//g" module_utility.F90 > module_utility.b
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional -C -P -I. module_utility.b > module_utility.f
/bin/rm -f module_utility.b
gfortran   -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o module_utility.o -c module_utility.f
/bin/rm -f libesmf_time.a
if [ "ar" != "lib.exe" ] ; then \
          ar ru libesmf_time.a ESMF_Alarm.o ESMF_BaseTime.o ESMF_Clock.o ESMF_Time.o Meat.o ESMF_Base.o ESMF_Calendar.o ESMF_Fraction.o ESMF_TimeInterval.o ESMF_Stubs.o ESMF_Mod.o module_symbols_util.o module_utility.o ESMF_AlarmClock.o ; \
        else \
          ar /out:libesmf_time.a ESMF_Alarm.o ESMF_BaseTime.o ESMF_Clock.o ESMF_Time.o Meat.o ESMF_Base.o ESMF_Calendar.o ESMF_Fraction.o ESMF_TimeInterval.o ESMF_Stubs.o ESMF_Mod.o module_symbols_util.o module_utility.o ESMF_AlarmClock.o ; \
        fi
ar: creating libesmf_time.a
ranlib libesmf_time.a
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/fftpack/fftpack5 ; \
          make FC="gfortran" FFLAGS="  -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " RANLIB="ranlib" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/fftpack/fftpack5'
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f2kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f2kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f3kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f3kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f4kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f4kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f5kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1f5kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1fgkb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1fgkf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1fm1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  c1fm1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfft1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfft1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfft1i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfft2b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfft2f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfft2i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfftmb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfftmf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cfftmi.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf2kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf2kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf3kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf3kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf4kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf4kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf5kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmf5kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmfgkb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmfgkf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmfm1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cmfm1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosq1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosq1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosq1i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosqb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosqf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosqmb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosqmf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cosqmi.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cost1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cost1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  cost1i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  costb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  costf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  costmb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  costmf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  costmi.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  factor.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mcfti1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mcsqb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mcsqf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mcstb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mcstf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradb2.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradb3.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradb4.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradb5.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradbg.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradf2.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradf3.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradf4.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradf5.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mradfg.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mrftb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mrftf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  mrfti1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  msntb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  msntf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f2kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f2kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f3kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f3kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f4kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f4kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f5kb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1f5kf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1fgkb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  r1fgkf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfft1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfft1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfft1i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfft2b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfft2f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfft2i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfftb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfftf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rffti1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfftmb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfftmf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  rfftmi.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sinq1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sinq1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sinq1i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sinqmb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sinqmf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sinqmi.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sint1b.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sint1f.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sint1i.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sintb1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sintf1.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sintmb.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sintmf.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  sintmi.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  tables.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  xercon.F 
gfortran -c -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  xerfft.F 
ar ru libfftpack.a c1f2kb.o c1f2kf.o c1f3kb.o c1f3kf.o c1f4kb.o c1f4kf.o c1f5kb.o c1f5kf.o c1fgkb.o c1fgkf.o c1fm1b.o c1fm1f.o cfft1b.o cfft1f.o cfft1i.o cfft2b.o cfft2f.o cfft2i.o cfftmb.o cfftmf.o cfftmi.o cmf2kb.o cmf2kf.o cmf3kb.o cmf3kf.o cmf4kb.o cmf4kf.o cmf5kb.o cmf5kf.o cmfgkb.o cmfgkf.o cmfm1b.o cmfm1f.o cosq1b.o cosq1f.o cosq1i.o cosqb1.o cosqf1.o cosqmb.o cosqmf.o cosqmi.o cost1b.o cost1f.o cost1i.o costb1.o costf1.o costmb.o costmf.o costmi.o factor.o mcfti1.o mcsqb1.o mcsqf1.o mcstb1.o mcstf1.o mradb2.o mradb3.o mradb4.o mradb5.o mradbg.o mradf2.o mradf3.o mradf4.o mradf5.o mradfg.o mrftb1.o mrftf1.o mrfti1.o msntb1.o msntf1.o r1f2kb.o r1f2kf.o r1f3kb.o r1f3kf.o r1f4kb.o r1f4kf.o r1f5kb.o r1f5kf.o r1fgkb.o r1fgkf.o rfft1b.o rfft1f.o rfft1i.o rfft2b.o rfft2f.o rfft2i.o rfftb1.o rfftf1.o rffti1.o rfftmb.o rfftmf.o rfftmi.o sinq1b.o sinq1f.o sinq1i.o sinqmb.o sinqmf.o sinqmi.o sint1b.o sint1f.o sint1i.o sintb1.o sintf1.o sintmb.o sintmf.o sintmi.o tables.o xercon.o xerfft.o
ar: creating libfftpack.a
ranlib libfftpack.a
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/fftpack/fftpack5'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf ; \
          make NETCDFPATH="/home/shankha/work/packages/netcdf/install" RANLIB="ranlib" CPP="/lib/cpp -C -P" \
          CC="gcc" CFLAGS="-w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25" \
          FC="gfortran  -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " TRADFLAG="-traditional" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf'
grep nf_format_64bit /home/shankha/work/packages/netcdf/install/include/netcdf.inc ;\
                        a=$? ; export a ; \
			if [ $a -a "$WRFIO_NCD_LARGE_FILE_SUPPORT" = "1" ] ; then \
                          /lib/cpp -C -P -C -P -traditional -DWRFIO_NCD_LARGE_FILE_SUPPORT -I../ioapi_share wrf_io.F90 | m4 -Uinclude -Uindex -Ulen - > wrf_io.f ; \
                        else \
                          /lib/cpp -C -P -C -P -traditional -I../ioapi_share wrf_io.F90 | m4 -Uinclude -Uindex -Ulen - > wrf_io.f ; \
                        fi
      integer nf_format_64bit
      parameter (nf_format_64bit = 2)
gfortran  -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o wrf_io.o  -I/home/shankha/work/packages/netcdf/install/include -I../ioapi_share -c wrf_io.f
/lib/cpp -C -P -C -P -traditional -I../ioapi_share field_routines.F90 > field_routines.f
gfortran  -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o field_routines.o  -I/home/shankha/work/packages/netcdf/install/include -I../ioapi_share -c field_routines.f
/lib/cpp -C -P -C -P -traditional -I../ioapi_share module_wrfsi_static.F90 > module_wrfsi_static.f
gfortran  -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -o module_wrfsi_static.o  -I/home/shankha/work/packages/netcdf/install/include -I../ioapi_share -c module_wrfsi_static.f
/bin/rm -f libwrfio_nf.a
if [ "ar" != "lib.exe" ] ; then \
                          ar cr libwrfio_nf.a wrf_io.o field_routines.o module_wrfsi_static.o ; \
                        else \
                          ar /out:libwrfio_nf.a wrf_io.o field_routines.o module_wrfsi_static.o ; \
                        fi
ranlib libwrfio_nf.a
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf'
( cd /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/RSL_LITE ; make CC="mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25" \
          FC="mpif77 -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -fconvert=big-endian -frecord-marker=4" \
          CPP="/lib/cpp -C -P -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional" AR="ar" ARFLAGS="ru" ;\
          ranlib /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/RSL_LITE/librsl_lite.a )
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/RSL_LITE'
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c c_code.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c buf_for_proc.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c rsl_malloc.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c rsl_bcast.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c task_for_point.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c period.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c swap.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  -c cycle.c
mpif77 -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -fconvert=big-endian -frecord-marker=4 -o f_pack.o  -c f_pack.F90
/lib/cpp -C -P -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -traditional f_xpose.F90 > f_xpose.f
mpif77 -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -fconvert=big-endian -frecord-marker=4 -o f_xpose.o  -c f_xpose.f
/bin/rm -f librsl_lite.a
ar cr librsl_lite.a c_code.o buf_for_proc.o rsl_malloc.o rsl_bcast.o task_for_point.o period.o swap.o cycle.o f_pack.o f_xpose.o
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/RSL_LITE'
( if [ ! -e /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/gen_comms.c ] ; then \
          /bin/cp /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/gen_comms_warning /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/gen_comms.c ; \
          cat /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/RSL_LITE/gen_comms.c >> /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/gen_comms.c ; fi )
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
          cat /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame'
make[1]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" toolsdir
make[1]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
--------------------------------------
( cd tools ; make -i -r CC_TOOLS="gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25" )
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools'
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  registry.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  my_strtok.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  reg_parse.c
reg_parse.c: In function ?pre_parse?:
reg_parse.c:258: warning: format not a string literal and no format arguments
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  data.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  type.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  misc.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_defs.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_allocs.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_mod_state_descr.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_scalar_indices.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_args.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_config.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  sym.c
sym.c: In function ?sym_init?:
sym.c:77: warning: incompatible implicit declaration of built-in function ?exit?
sym.c: In function ?sym_forget?:
sym.c:157: warning: incompatible implicit declaration of built-in function ?exit?
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  symtab_gen.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_model_data_ord.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_interp.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_comms.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_scalar_derefs.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  set_dim_strs.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_wrf_io.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  gen_streams.c
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25  -c -g  standard.c
standard.c: In function ?main?:
standard.c:43: warning: incompatible implicit declaration of built-in function ?strncpy?
standard.c:78: warning: incompatible implicit declaration of built-in function ?strcpy?
standard.c:88: warning: incompatible implicit declaration of built-in function ?strcat?
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25 -o standard.exe -g   standard.o
gcc  -DIWORDSIZE=4 -DMAX_HISTORY=25 -o registry -g   registry.o my_strtok.o reg_parse.o data.o type.o misc.o gen_defs.o gen_allocs.o gen_mod_state_descr.o gen_scalar_indices.o gen_args.o gen_config.o sym.o symtab_gen.o gen_model_data_ord.o gen_interp.o gen_comms.o gen_scalar_derefs.o set_dim_strs.o gen_wrf_io.o gen_streams.o
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools'
make[1]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
/bin/rm -f main/libwrflib.a main/libwrflib.lib
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" framework
make[1]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
--------------------------------------
( cd frame ; make -i -r -j 2 framework; \
          cd ../external/io_netcdf ; \
          make -i -r NETCDFPATH="/home/shankha/work/packages/netcdf/install" FC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " RANLIB="ranlib" \
               CPP="/lib/cpp -C -P" LDFLAGS=" -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   " TRADFLAG="-traditional" ESMF_IO_LIB_EXT="-L/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90 -lesmf_time" \
               ESMF_MOD_DEPENDENCE="/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf; \
          cd ../io_int ; \
          make -i -r SFC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " FC="gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " RANLIB="ranlib" CPP="/lib/cpp -C -P" \
               TRADFLAG="-traditional" ESMF_IO_LIB_EXT="-L/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90 -lesmf_time" \
               ESMF_MOD_DEPENDENCE="/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf ; \
          cd ../../frame )
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame'
( cd .. ; tools/registry -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -DNEW_BDYS Registry/Registry ) ; 
rm -f wrf_shutdown.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_shutdown.F  > wrf_shutdown.bb
opening Registry/registry.dimspec
including Registry/registry.dimspec
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_shutdown.bb | /lib/cpp -C -P > wrf_shutdown.f90
rm -f wrf_shutdown.b wrf_shutdown.bb
if fgrep -iq '!$OMP' wrf_shutdown.f90 ; then \
          if [ -n "" ] ; then echo COMPILING wrf_shutdown.F WITH OMP ; fi ; \
	  mpif77 -o wrf_shutdown.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_shutdown.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING wrf_shutdown.F WITHOUT OMP ; fi ; \
	  mpif77 -o wrf_shutdown.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_shutdown.f90 ; \
        fi
opening Registry/registry.les
including Registry/registry.les
opening Registry/registry.cam
including Registry/registry.cam
rm -f module_sm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sm.F  > module_sm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sm.bb | /lib/cpp -C -P > module_sm.f90
rm -f module_sm.b module_sm.bb
if fgrep -iq '!$OMP' module_sm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sm.F WITH OMP ; fi ; \
	  mpif77 -o module_sm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sm.f90 ; \
        fi
if [ "m4 -G" = NA ] ; then \
	  /bin/cp ../arch/md_calls.inc . ; \
	else \
	  m4 -G md_calls.m4 > md_calls.inc ; \
	fi
/lib/cpp -C -P -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional  -I../inc module_internal_header_util.F > module_internal_header_util.f90
gfortran -c    -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  module_internal_header_util.f90
opening Registry/registry.io_boilerplate
including Registry/registry.io_boilerplate
opening Registry/io_boilerplate_temporary.inc
including Registry/io_boilerplate_temporary.inc
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -c -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25 wrf_num_bytes_between.c
rm -f libmassv.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   libmassv.F  > libmassv.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe libmassv.bb | /lib/cpp -C -P > libmassv.f90
rm -f libmassv.b libmassv.bb
if fgrep -iq '!$OMP' libmassv.f90 ; then \
          if [ -n "" ] ; then echo COMPILING libmassv.F WITH OMP ; fi ; \
	  mpif77 -o libmassv.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   libmassv.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING libmassv.F WITHOUT OMP ; fi ; \
	  mpif77 -o libmassv.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   libmassv.f90 ; \
        fi
opening Registry/registry.fire
including Registry/registry.fire
opening Registry/registry.avgflx
including Registry/registry.avgflx
opening Registry/registry.stoch
including Registry/registry.stoch
rm -f collect_on_comm.o
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -o collect_on_comm.o -c -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25 collect_on_comm.c
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -c -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25 -DIWORDSIZE=4 pack_utils.c
Registry INFO variable counts: 0d 1920 1d 92 2d 595 3d 434
rm -f module_wrf_error.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_wrf_error.F  > module_wrf_error.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_wrf_error.bb | /lib/cpp -C -P > module_wrf_error.f90
rm -f module_wrf_error.b module_wrf_error.bb
if fgrep -iq '!$OMP' module_wrf_error.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_wrf_error.F WITH OMP ; fi ; \
	  mpif77 -o module_wrf_error.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_wrf_error.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_wrf_error.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_wrf_error.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_wrf_error.f90 ; \
        fi
rm -f wrf_debug.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_debug.F  > wrf_debug.bb
ADVISORY: RSL_LITE version of gen_comms is linked in with registry program.
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_debug.bb | /lib/cpp -C -P > wrf_debug.f90
rm -f wrf_debug.b wrf_debug.bb
if fgrep -iq '!$OMP' wrf_debug.f90 ; then \
          if [ -n "" ] ; then echo COMPILING wrf_debug.F WITH OMP ; fi ; \
	  mpif77 -o wrf_debug.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_debug.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING wrf_debug.F WITHOUT OMP ; fi ; \
	  mpif77 -o wrf_debug.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_debug.f90 ; \
        fi
rm -f module_state_description.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_state_description.F  > module_state_description.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_state_description.bb | /lib/cpp -C -P > module_state_description.f90
rm -f module_state_description.b module_state_description.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_state_description.f90
rm -f module_driver_constants.o
rm -f module_streams.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_driver_constants.F  > module_driver_constants.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_streams.F  > module_streams.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_driver_constants.bb | /lib/cpp -C -P > module_driver_constants.f90
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_streams.bb | /lib/cpp -C -P > module_streams.f90
rm -f module_driver_constants.b module_driver_constants.bb
rm -f module_streams.b module_streams.bb
if fgrep -iq '!$OMP' module_driver_constants.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_driver_constants.F WITH OMP ; fi ; \
	  mpif77 -o module_driver_constants.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_driver_constants.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_driver_constants.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_driver_constants.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_driver_constants.f90 ; \
        fi
if fgrep -iq '!$OMP' module_streams.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_streams.F WITH OMP ; fi ; \
	  mpif77 -o module_streams.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_streams.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_streams.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_streams.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_streams.f90 ; \
        fi
rm -f module_timing.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_timing.F  > module_timing.bb
rm -f module_domain_type.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_domain_type.F  > module_domain_type.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_timing.bb | /lib/cpp -C -P > module_timing.f90
rm -f module_timing.b module_timing.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_domain_type.bb | /lib/cpp -C -P > module_domain_type.f90
if fgrep -iq '!$OMP' module_timing.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_timing.F WITH OMP ; fi ; \
	  mpif77 -o module_timing.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_timing.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_timing.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_timing.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_timing.f90 ; \
        fi
rm -f module_domain_type.b module_domain_type.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_domain_type.f90
rm -f module_machine.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_machine.F  > module_machine.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_machine.bb | /lib/cpp -C -P > module_machine.f90
rm -f module_machine.b module_machine.bb
if fgrep -iq '!$OMP' module_machine.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_machine.F WITH OMP ; fi ; \
	  mpif77 -o module_machine.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_machine.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_machine.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_machine.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_machine.f90 ; \
        fi
rm -f module_quilt_outbuf_ops.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_quilt_outbuf_ops.F  > module_quilt_outbuf_ops.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_quilt_outbuf_ops.bb | /lib/cpp -C -P > module_quilt_outbuf_ops.f90
rm -f module_quilt_outbuf_ops.b module_quilt_outbuf_ops.bb
if fgrep -iq '!$OMP' module_quilt_outbuf_ops.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_quilt_outbuf_ops.F WITH OMP ; fi ; \
	  mpif77 -o module_quilt_outbuf_ops.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_quilt_outbuf_ops.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_quilt_outbuf_ops.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_quilt_outbuf_ops.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_quilt_outbuf_ops.f90 ; \
        fi
rm -f module_configure.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_configure.F  > module_configure.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_configure.bb | /lib/cpp -C -P > module_configure.f90
rm -f module_configure.b module_configure.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_configure.f90
rm -f module_alloc_space_0.o
rm -f module_alloc_space_1.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_0.F  > module_alloc_space_0.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_1.F  > module_alloc_space_1.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_0.bb | /lib/cpp -C -P > module_alloc_space_0.f90
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_1.bb | /lib/cpp -C -P > module_alloc_space_1.f90
rm -f module_alloc_space_0.b module_alloc_space_0.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_0.f90
rm -f module_alloc_space_1.b module_alloc_space_1.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_1.f90
rm -f module_alloc_space_2.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_2.F  > module_alloc_space_2.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_2.bb | /lib/cpp -C -P > module_alloc_space_2.f90
rm -f module_alloc_space_2.b module_alloc_space_2.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_2.f90
rm -f module_alloc_space_3.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_3.F  > module_alloc_space_3.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_3.bb | /lib/cpp -C -P > module_alloc_space_3.f90
rm -f module_alloc_space_3.b module_alloc_space_3.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_3.f90
rm -f module_alloc_space_4.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_4.F  > module_alloc_space_4.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_4.bb | /lib/cpp -C -P > module_alloc_space_4.f90
rm -f module_alloc_space_4.b module_alloc_space_4.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_4.f90
rm -f module_alloc_space_5.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_5.F  > module_alloc_space_5.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_5.bb | /lib/cpp -C -P > module_alloc_space_5.f90
rm -f module_alloc_space_5.b module_alloc_space_5.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_5.f90
rm -f module_alloc_space_6.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_6.F  > module_alloc_space_6.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_6.bb | /lib/cpp -C -P > module_alloc_space_6.f90
rm -f module_alloc_space_6.b module_alloc_space_6.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_6.f90
rm -f module_alloc_space_7.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_7.F  > module_alloc_space_7.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_7.bb | /lib/cpp -C -P > module_alloc_space_7.f90
rm -f module_alloc_space_7.b module_alloc_space_7.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_7.f90
rm -f module_alloc_space_8.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_8.F  > module_alloc_space_8.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_8.bb | /lib/cpp -C -P > module_alloc_space_8.f90
rm -f module_alloc_space_8.b module_alloc_space_8.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_8.f90
rm -f module_alloc_space_9.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_alloc_space_9.F  > module_alloc_space_9.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_alloc_space_9.bb | /lib/cpp -C -P > module_alloc_space_9.f90
rm -f module_alloc_space_9.b module_alloc_space_9.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_alloc_space_9.f90
/lib/cpp -C -P -DNNN=0 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy0.f90
mpif77 -o nl_get_0_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy0.f90
/lib/cpp -C -P -DNNN=1 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy1.f90
mpif77 -o nl_get_1_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy1.f90
rm -f yy0.f90
/lib/cpp -C -P -DNNN=2 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy2.f90
mpif77 -o nl_get_2_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy2.f90
rm -f yy1.f90
/lib/cpp -C -P -DNNN=3 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy3.f90
mpif77 -o nl_get_3_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy3.f90
rm -f yy2.f90
/lib/cpp -C -P -DNNN=4 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy4.f90
mpif77 -o nl_get_4_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy4.f90
rm -f yy3.f90
/lib/cpp -C -P -DNNN=5 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy5.f90
mpif77 -o nl_get_5_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy5.f90
rm -f yy4.f90
/lib/cpp -C -P -DNNN=6 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy6.f90
mpif77 -o nl_get_6_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy6.f90
rm -f yy5.f90
/lib/cpp -C -P -DNNN=7 -I../inc -DNL_get_ROUTINES nl_access_routines.F > yy7.f90
mpif77 -o nl_get_7_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  yy7.f90
rm -f yy6.f90
/lib/cpp -C -P -DNNN=0 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx0.f90
mpif77 -o nl_set_0_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx0.f90
rm -f yy7.f90
/lib/cpp -C -P -DNNN=1 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx1.f90
mpif77 -o nl_set_1_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx1.f90
rm -f xx0.f90
/lib/cpp -C -P -DNNN=2 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx2.f90
mpif77 -o nl_set_2_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx2.f90
rm -f xx1.f90
/lib/cpp -C -P -DNNN=3 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx3.f90
mpif77 -o nl_set_3_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx3.f90
rm -f xx2.f90
/lib/cpp -C -P -DNNN=4 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx4.f90
mpif77 -o nl_set_4_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx4.f90
rm -f xx3.f90
/lib/cpp -C -P -DNNN=5 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx5.f90
mpif77 -o nl_set_5_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx5.f90
rm -f xx4.f90
/lib/cpp -C -P -DNNN=6 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx6.f90
mpif77 -o nl_set_6_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx6.f90
rm -f xx5.f90
/lib/cpp -C -P -DNNN=7 -I../inc -DNL_set_ROUTINES nl_access_routines.F > xx7.f90
mpif77 -o nl_set_7_routines.o -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  xx7.f90
rm -f xx6.f90
rm -f module_domain.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_domain.F  > module_domain.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_domain.bb | /lib/cpp -C -P > module_domain.f90
rm -f xx7.f90
rm -f module_domain.b module_domain.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_domain.f90
rm -f module_nesting.o
rm -f module_tiles.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_nesting.F  > module_nesting.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_tiles.F > module_tiles.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_tiles.b  > module_tiles.f90
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_nesting.bb | /lib/cpp -C -P > module_nesting.f90
rm -f module_tiles.b
rm -f module_nesting.b module_nesting.bb
if fgrep -iq '!$OMP' module_tiles.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_tiles.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_tiles.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_tiles.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  module_tiles.f90 ; \
        fi
if fgrep -iq '!$OMP' module_nesting.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_nesting.F WITH OMP ; fi ; \
	  mpif77 -o module_nesting.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_nesting.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_nesting.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_nesting.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_nesting.f90 ; \
        fi
rm -f module_comm_nesting_dm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_comm_nesting_dm.F  > module_comm_nesting_dm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_comm_nesting_dm.bb | /lib/cpp -C -P > module_comm_nesting_dm.f90
rm -f module_comm_nesting_dm.b module_comm_nesting_dm.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_comm_nesting_dm.f90
rm -f module_comm_dm_0.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_comm_dm_0.F  > module_comm_dm_0.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_comm_dm_0.bb | /lib/cpp -C -P > module_comm_dm_0.f90
rm -f module_comm_dm_0.b module_comm_dm_0.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_comm_dm_0.f90
rm -f module_comm_dm_1.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_comm_dm_1.F  > module_comm_dm_1.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_comm_dm_1.bb | /lib/cpp -C -P > module_comm_dm_1.f90
rm -f module_comm_dm_1.b module_comm_dm_1.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_comm_dm_1.f90
rm -f module_comm_dm_2.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_comm_dm_2.F  > module_comm_dm_2.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_comm_dm_2.bb | /lib/cpp -C -P > module_comm_dm_2.f90
rm -f module_comm_dm_2.b module_comm_dm_2.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_comm_dm_2.f90
rm -f module_comm_dm_3.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_comm_dm_3.F  > module_comm_dm_3.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_comm_dm_3.bb | /lib/cpp -C -P > module_comm_dm_3.f90
rm -f module_comm_dm_3.b module_comm_dm_3.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_comm_dm_3.f90
rm -f module_comm_dm_4.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_comm_dm_4.F  > module_comm_dm_4.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_comm_dm_4.bb | /lib/cpp -C -P > module_comm_dm_4.f90
rm -f module_comm_dm_4.b module_comm_dm_4.bb
if fgrep -iq '!$OMP' module_comm_dm_4.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_comm_dm_4.F WITH OMP ; fi ; \
	  mpif77 -o module_comm_dm_4.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_comm_dm_4.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_comm_dm_4.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_comm_dm_4.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_comm_dm_4.f90 ; \
        fi
rm -f module_integrate.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_integrate.F > module_integrate.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_integrate.b  > module_integrate.f90
rm -f module_integrate.b
if fgrep -iq '!$OMP' module_integrate.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_integrate.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_integrate.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_integrate.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  module_integrate.f90 ; \
        fi
rm -f module_comm_dm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_comm_dm.F  > module_comm_dm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_comm_dm.bb | /lib/cpp -C -P > module_comm_dm.f90
rm -f module_comm_dm.b module_comm_dm.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_comm_dm.f90
rm -f module_dm.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_dm.F > module_dm.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_dm.b  > module_dm.f90
rm -f module_dm.b
if fgrep -iq '!$OMP' module_dm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_dm.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_dm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_dm.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  module_dm.f90 ; \
        fi
rm -f module_io.o
rm -f module_io_quilt.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_io.F  > module_io.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_io_quilt.F  > module_io_quilt.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_io_quilt.bb | /lib/cpp -C -P > module_io_quilt.f90
rm -f module_io_quilt.b module_io_quilt.bb
if fgrep -iq '!$OMP' module_io_quilt.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_io_quilt.F WITH OMP ; fi ; \
	  mpif77 -o module_io_quilt.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_io_quilt.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_io_quilt.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_io_quilt.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_io_quilt.f90 ; \
        fi
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_io.bb | /lib/cpp -C -P > module_io.f90
rm -f module_io.b module_io.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_io.f90
ar ru ../main/libwrflib.a module_driver_constants.o module_domain_type.o module_streams.o module_domain.o module_integrate.o module_timing.o module_configure.o module_tiles.o module_machine.o module_nesting.o module_wrf_error.o module_state_description.o module_sm.o module_io.o module_comm_dm.o module_comm_dm_0.o module_comm_dm_1.o module_comm_dm_2.o module_comm_dm_3.o module_comm_dm_4.o module_comm_nesting_dm.o module_dm.o module_quilt_outbuf_ops.o module_io_quilt.o wrf_num_bytes_between.o wrf_shutdown.o wrf_debug.o libmassv.o collect_on_comm.o nl_get_0_routines.o nl_get_1_routines.o nl_get_2_routines.o nl_get_3_routines.o nl_get_4_routines.o nl_get_5_routines.o nl_get_6_routines.o nl_get_7_routines.o nl_set_0_routines.o nl_set_1_routines.o nl_set_2_routines.o nl_set_3_routines.o nl_set_4_routines.o nl_set_5_routines.o nl_set_6_routines.o nl_set_7_routines.o  module_alloc_space_0.o module_alloc_space_1.o module_alloc_space_2.o module_alloc_space_3.o module_alloc_space_4.o module_alloc_space_5.o module_alloc_space_6.o module_alloc_space_7.o module_alloc_space_8.o module_alloc_space_9.o
ar: creating ../main/libwrflib.a
ranlib ../main/libwrflib.a
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame'
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf'
x=`echo "gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " | awk '{print $1}'` ; export x ; \
	if [ $x = "gfortran" ] ; then \
           echo removing external declaration of iargc for gfortran ; \
	   /lib/cpp -C -P -C -P -traditional -I/home/shankha/work/packages/netcdf/install/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\
        else \
	   /lib/cpp -C -P -C -P -traditional -I/home/shankha/work/packages/netcdf/install/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \
        fi
removing external declaration of iargc for gfortran
gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -c  -I/home/shankha/work/packages/netcdf/install/include -I../ioapi_share diffwrf.f
diffwrf io_netcdf is being built now. 
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf'
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int'
if [ -f ../../frame/pack_utils.o ] ; then \
			mv diffwrf.F diffwrf.F90    ; \
                        x=`echo "gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 " | awk '{print $1}'` ; export x ; \
                        if [ $x = "gfortran" ] ; then \
                          echo removing external declaration of iargc for gfortran ; \
			  /lib/cpp -C -P -traditional  -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f  ; \
                        else \
			  /lib/cpp -C -P -traditional  -I../ioapi_share diffwrf.F90 > diffwrf.f  ; \
                        fi ; \
			gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -c  -I../ioapi_share diffwrf.f    ; \
			mv diffwrf.F90 diffwrf.F ; \
			gfortran -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    -o diffwrf diffwrf.o io_int.o  \
                        ../../frame/pack_utils.o ../../frame/module_internal_header_util.o \
                        ../../frame/module_driver_constants.o \
			../../frame/module_machine.o ../../frame/wrf_debug.o ../../frame/module_wrf_error.o \
			-L/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90 -lesmf_time ; fi
removing external declaration of iargc for gfortran
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int'
make[1]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" shared
make[1]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
--------------------------------------
( cd share ; make -i -r -j 2 )
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share'
rm -f module_bc.o
rm -f module_bc_time_utilities.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bc.F  > module_bc.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bc_time_utilities.F  > module_bc_time_utilities.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bc_time_utilities.bb | /lib/cpp -C -P > module_bc_time_utilities.f90
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bc.bb | /lib/cpp -C -P > module_bc.f90
rm -f module_bc_time_utilities.b module_bc_time_utilities.bb
if fgrep -iq '!$OMP' module_bc_time_utilities.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bc_time_utilities.F WITH OMP ; fi ; \
	  mpif77 -o module_bc_time_utilities.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bc_time_utilities.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bc_time_utilities.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bc_time_utilities.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bc_time_utilities.f90 ; \
        fi
rm -f module_bc.b module_bc.bb
if fgrep -iq '!$OMP' module_bc.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bc.F WITH OMP ; fi ; \
	  mpif77 -o module_bc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bc.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bc.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bc.f90 ; \
        fi
rm -f module_model_constants.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_model_constants.F  > module_model_constants.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_model_constants.bb | /lib/cpp -C -P > module_model_constants.f90
rm -f module_model_constants.b module_model_constants.bb
if fgrep -iq '!$OMP' module_model_constants.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_model_constants.F WITH OMP ; fi ; \
	  mpif77 -o module_model_constants.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_model_constants.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_model_constants.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_model_constants.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_model_constants.f90 ; \
        fi
rm -f module_get_file_names.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_get_file_names.F  > module_get_file_names.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_get_file_names.bb | /lib/cpp -C -P > module_get_file_names.f90
rm -f module_get_file_names.b module_get_file_names.bb
if fgrep -iq '!$OMP' module_get_file_names.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_get_file_names.F WITH OMP ; fi ; \
	  mpif77 -o module_get_file_names.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_get_file_names.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_get_file_names.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_get_file_names.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_get_file_names.f90 ; \
        fi
rm -f module_MPP.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_MPP.F  > module_MPP.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_MPP.bb | /lib/cpp -C -P > module_MPP.f90
rm -f module_MPP.b module_MPP.bb
if fgrep -iq '!$OMP' module_MPP.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_MPP.F WITH OMP ; fi ; \
	  mpif77 -o module_MPP.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_MPP.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_MPP.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_MPP.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_MPP.f90 ; \
        fi
rm -f module_compute_geop.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_compute_geop.F  > module_compute_geop.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_compute_geop.bb | /lib/cpp -C -P > module_compute_geop.f90
rm -f module_compute_geop.b module_compute_geop.bb
if fgrep -iq '!$OMP' module_compute_geop.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_compute_geop.F WITH OMP ; fi ; \
	  mpif77 -o module_compute_geop.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_compute_geop.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_compute_geop.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_compute_geop.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_compute_geop.f90 ; \
        fi
rm -f module_check_a_mundo.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_check_a_mundo.F  > module_check_a_mundo.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_check_a_mundo.bb | /lib/cpp -C -P > module_check_a_mundo.f90
rm -f module_check_a_mundo.b module_check_a_mundo.bb
if fgrep -iq '!$OMP' module_check_a_mundo.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_check_a_mundo.F WITH OMP ; fi ; \
	  mpif77 -o module_check_a_mundo.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_check_a_mundo.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_check_a_mundo.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_check_a_mundo.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_check_a_mundo.f90 ; \
        fi
rm -f module_llxy.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_llxy.F  > module_llxy.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_llxy.bb | /lib/cpp -C -P > module_llxy.f90
rm -f module_llxy.b module_llxy.bb
if fgrep -iq '!$OMP' module_llxy.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_llxy.F WITH OMP ; fi ; \
	  mpif77 -o module_llxy.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_llxy.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_llxy.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_llxy.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_llxy.f90 ; \
        fi
rm -f mediation_interp_domain.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   mediation_interp_domain.F  > mediation_interp_domain.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe mediation_interp_domain.bb | /lib/cpp -C -P > mediation_interp_domain.f90
rm -f mediation_interp_domain.b mediation_interp_domain.bb
if fgrep -iq '!$OMP' mediation_interp_domain.f90 ; then \
          if [ -n "" ] ; then echo COMPILING mediation_interp_domain.F WITH OMP ; fi ; \
	  mpif77 -o mediation_interp_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_interp_domain.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING mediation_interp_domain.F WITHOUT OMP ; fi ; \
	  mpif77 -o mediation_interp_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_interp_domain.f90 ; \
        fi
rm -f mediation_force_domain.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   mediation_force_domain.F  > mediation_force_domain.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe mediation_force_domain.bb | /lib/cpp -C -P > mediation_force_domain.f90
rm -f mediation_force_domain.b mediation_force_domain.bb
if fgrep -iq '!$OMP' mediation_force_domain.f90 ; then \
          if [ -n "" ] ; then echo COMPILING mediation_force_domain.F WITH OMP ; fi ; \
	  mpif77 -o mediation_force_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_force_domain.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING mediation_force_domain.F WITHOUT OMP ; fi ; \
	  mpif77 -o mediation_force_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_force_domain.f90 ; \
        fi
rm -f mediation_feedback_domain.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   mediation_feedback_domain.F  > mediation_feedback_domain.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe mediation_feedback_domain.bb | /lib/cpp -C -P > mediation_feedback_domain.f90
rm -f mediation_feedback_domain.b mediation_feedback_domain.bb
if fgrep -iq '!$OMP' mediation_feedback_domain.f90 ; then \
          if [ -n "" ] ; then echo COMPILING mediation_feedback_domain.F WITH OMP ; fi ; \
	  mpif77 -o mediation_feedback_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_feedback_domain.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING mediation_feedback_domain.F WITHOUT OMP ; fi ; \
	  mpif77 -o mediation_feedback_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_feedback_domain.f90 ; \
        fi
rm -f solve_interface.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe solve_interface.F > solve_interface.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   solve_interface.b  > solve_interface.f90
rm -f solve_interface.b
if fgrep -iq '!$OMP' solve_interface.f90 ; then \
          if [ -n "" ] ; then echo COMPILING solve_interface.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   solve_interface.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING solve_interface.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  solve_interface.f90 ; \
        fi
rm -f wrf_tsin.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_tsin.F > wrf_tsin.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_tsin.b  > wrf_tsin.f90
rm -f wrf_tsin.b
if fgrep -iq '!$OMP' wrf_tsin.f90 ; then \
          if [ -n "" ] ; then echo COMPILING wrf_tsin.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_tsin.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING wrf_tsin.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  wrf_tsin.f90 ; \
        fi
rm -f set_timekeeping.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   set_timekeeping.F  > set_timekeeping.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe set_timekeeping.bb | /lib/cpp -C -P > set_timekeeping.f90
rm -f set_timekeeping.b set_timekeeping.bb
if fgrep -iq '!$OMP' set_timekeeping.f90 ; then \
          if [ -n "" ] ; then echo COMPILING set_timekeeping.F WITH OMP ; fi ; \
	  mpif77 -o set_timekeeping.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   set_timekeeping.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING set_timekeeping.F WITHOUT OMP ; fi ; \
	  mpif77 -o set_timekeeping.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   set_timekeeping.f90 ; \
        fi
rm -f interp_fcn.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   interp_fcn.F  > interp_fcn.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe interp_fcn.bb | /lib/cpp -C -P > interp_fcn.f90
rm -f interp_fcn.b interp_fcn.bb
if fgrep -iq '!$OMP' interp_fcn.f90 ; then \
          if [ -n "" ] ; then echo COMPILING interp_fcn.F WITH OMP ; fi ; \
	  mpif77 -o interp_fcn.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   interp_fcn.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING interp_fcn.F WITHOUT OMP ; fi ; \
	  mpif77 -o interp_fcn.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   interp_fcn.f90 ; \
        fi
rm -f sint.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   sint.F  > sint.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe sint.bb | /lib/cpp -C -P > sint.f90
rm -f sint.b sint.bb
if fgrep -iq '!$OMP' sint.f90 ; then \
          if [ -n "" ] ; then echo COMPILING sint.F WITH OMP ; fi ; \
	  mpif77 -o sint.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   sint.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING sint.F WITHOUT OMP ; fi ; \
	  mpif77 -o sint.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   sint.f90 ; \
        fi
rm -f wrf_ext_write_field.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_ext_write_field.F  > wrf_ext_write_field.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_ext_write_field.bb | /lib/cpp -C -P > wrf_ext_write_field.f90
rm -f wrf_ext_write_field.b wrf_ext_write_field.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include wrf_ext_write_field.f90
rm -f wrf_ext_read_field.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_ext_read_field.F  > wrf_ext_read_field.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_ext_read_field.bb | /lib/cpp -C -P > wrf_ext_read_field.f90
rm -f wrf_ext_read_field.b wrf_ext_read_field.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include wrf_ext_read_field.f90
rm -f landread.o
mpicc -DMPI2_SUPPORT -DFSEEKO64_OK  -o landread.o -c -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25 landread.c
rm -f setfeenv.o
gcc -o setfeenv.o -c -w -O3 -c -DLANDREAD_STUB -DDM_PARALLEL -DMAX_HISTORY=25  setfeenv.c
rm -f module_date_time.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_date_time.F  > module_date_time.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_date_time.bb | /lib/cpp -C -P > module_date_time.f90
rm -f module_date_time.b module_date_time.bb
if fgrep -iq '!$OMP' module_date_time.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_date_time.F WITH OMP ; fi ; \
	  mpif77 -o module_date_time.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_date_time.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_date_time.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_date_time.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_date_time.f90 ; \
        fi
rm -f wrf_timeseries.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_timeseries.F  > wrf_timeseries.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_timeseries.bb | /lib/cpp -C -P > wrf_timeseries.f90
rm -f wrf_timeseries.b wrf_timeseries.bb
if fgrep -iq '!$OMP' wrf_timeseries.f90 ; then \
          if [ -n "" ] ; then echo COMPILING wrf_timeseries.F WITH OMP ; fi ; \
	  mpif77 -o wrf_timeseries.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_timeseries.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING wrf_timeseries.F WITHOUT OMP ; fi ; \
	  mpif77 -o wrf_timeseries.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_timeseries.f90 ; \
        fi
rm -f module_io_wrf.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_io_wrf.F > module_io_wrf.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_io_wrf.b  > module_io_wrf.f90
rm -f module_io_wrf.b
if fgrep -iq '!$OMP' module_io_wrf.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_io_wrf.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_io_wrf.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_io_wrf.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  module_io_wrf.f90 ; \
        fi
rm -f module_soil_pre.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_soil_pre.F  > module_soil_pre.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_soil_pre.bb | /lib/cpp -C -P > module_soil_pre.f90
rm -f module_soil_pre.b module_soil_pre.bb
if fgrep -iq '!$OMP' module_soil_pre.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_soil_pre.F WITH OMP ; fi ; \
	  mpif77 -o module_soil_pre.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_soil_pre.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_soil_pre.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_soil_pre.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_soil_pre.f90 ; \
        fi
rm -f init_modules.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   init_modules.F  > init_modules.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe init_modules.bb | /lib/cpp -C -P > init_modules.f90
rm -f init_modules.b init_modules.bb
if fgrep -iq '!$OMP' init_modules.f90 ; then \
          if [ -n "" ] ; then echo COMPILING init_modules.F WITH OMP ; fi ; \
	  mpif77 -o init_modules.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   init_modules.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING init_modules.F WITHOUT OMP ; fi ; \
	  mpif77 -o init_modules.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   init_modules.f90 ; \
        fi
rm -f input_wrf.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   input_wrf.F  > input_wrf.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe input_wrf.bb | /lib/cpp -C -P > input_wrf.f90
rm -f input_wrf.b input_wrf.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include input_wrf.f90
rm -f output_wrf.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe output_wrf.F > output_wrf.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   output_wrf.b  > output_wrf.f90
rm -f output_wrf.b
if fgrep -iq '!$OMP' output_wrf.f90 ; then \
          if [ -n "" ] ; then echo COMPILING output_wrf.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   output_wrf.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING output_wrf.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  output_wrf.f90 ; \
        fi
rm -f wrf_bdyout.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_bdyout.F  > wrf_bdyout.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_bdyout.bb | /lib/cpp -C -P > wrf_bdyout.f90
rm -f wrf_bdyout.b wrf_bdyout.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include wrf_bdyout.f90
rm -f wrf_fddaobs_in.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_fddaobs_in.F > wrf_fddaobs_in.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_fddaobs_in.b  > wrf_fddaobs_in.f90
rm -f wrf_fddaobs_in.b
if fgrep -iq '!$OMP' wrf_fddaobs_in.f90 ; then \
          if [ -n "" ] ; then echo COMPILING wrf_fddaobs_in.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf_fddaobs_in.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING wrf_fddaobs_in.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  wrf_fddaobs_in.f90 ; \
        fi
rm -f wrf_bdyin.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf_bdyin.F  > wrf_bdyin.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf_bdyin.bb | /lib/cpp -C -P > wrf_bdyin.f90
rm -f wrf_bdyin.b wrf_bdyin.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include wrf_bdyin.f90
rm -f module_io_domain.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_io_domain.F  > module_io_domain.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_io_domain.bb | /lib/cpp -C -P > module_io_domain.f90
rm -f module_io_domain.b module_io_domain.bb
if fgrep -iq '!$OMP' module_io_domain.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_io_domain.F WITH OMP ; fi ; \
	  mpif77 -o module_io_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_io_domain.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_io_domain.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_io_domain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_io_domain.f90 ; \
        fi
rm -f start_domain.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe start_domain.F > start_domain.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   start_domain.b  > start_domain.f90
rm -f start_domain.b
if fgrep -iq '!$OMP' start_domain.f90 ; then \
          if [ -n "" ] ; then echo COMPILING start_domain.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   start_domain.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING start_domain.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  start_domain.f90 ; \
        fi
rm -f module_optional_input.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_optional_input.F  > module_optional_input.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_optional_input.bb | /lib/cpp -C -P > module_optional_input.f90
rm -f module_optional_input.b module_optional_input.bb
if fgrep -iq '!$OMP' module_optional_input.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_optional_input.F WITH OMP ; fi ; \
	  mpif77 -o module_optional_input.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_optional_input.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_optional_input.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_optional_input.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_optional_input.f90 ; \
        fi
rm -f dfi.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   dfi.F  > dfi.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe dfi.bb | /lib/cpp -C -P > dfi.f90
rm -f dfi.b dfi.bb
if fgrep -iq '!$OMP' dfi.f90 ; then \
          if [ -n "" ] ; then echo COMPILING dfi.F WITH OMP ; fi ; \
	  mpif77 -o dfi.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   dfi.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING dfi.F WITHOUT OMP ; fi ; \
	  mpif77 -o dfi.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   dfi.f90 ; \
        fi
rm -f mediation_integrate.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   mediation_integrate.F  > mediation_integrate.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe mediation_integrate.bb | /lib/cpp -C -P > mediation_integrate.f90
rm -f mediation_integrate.b mediation_integrate.bb
if fgrep -iq '!$OMP' mediation_integrate.f90 ; then \
          if [ -n "" ] ; then echo COMPILING mediation_integrate.F WITH OMP ; fi ; \
	  mpif77 -o mediation_integrate.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_integrate.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING mediation_integrate.F WITHOUT OMP ; fi ; \
	  mpif77 -o mediation_integrate.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_integrate.f90 ; \
        fi
rm -f mediation_nest_move.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   mediation_nest_move.F  > mediation_nest_move.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe mediation_nest_move.bb | /lib/cpp -C -P > mediation_nest_move.f90
rm -f mediation_nest_move.b mediation_nest_move.bb
if fgrep -iq '!$OMP' mediation_nest_move.f90 ; then \
          if [ -n "" ] ; then echo COMPILING mediation_nest_move.F WITH OMP ; fi ; \
	  mpif77 -o mediation_nest_move.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_nest_move.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING mediation_nest_move.F WITHOUT OMP ; fi ; \
	  mpif77 -o mediation_nest_move.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_nest_move.f90 ; \
        fi
rm -f mediation_wrfmain.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   mediation_wrfmain.F  > mediation_wrfmain.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe mediation_wrfmain.bb | /lib/cpp -C -P > mediation_wrfmain.f90
rm -f mediation_wrfmain.b mediation_wrfmain.bb
if fgrep -iq '!$OMP' mediation_wrfmain.f90 ; then \
          if [ -n "" ] ; then echo COMPILING mediation_wrfmain.F WITH OMP ; fi ; \
	  mpif77 -o mediation_wrfmain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_wrfmain.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING mediation_wrfmain.F WITHOUT OMP ; fi ; \
	  mpif77 -o mediation_wrfmain.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   mediation_wrfmain.f90 ; \
        fi
if [ 0 -eq 1 ] ; then \
                  make -i -r nmm_contrib                                      ; \
                  ar ru ../main/libwrflib.a module_bc.o module_bc_time_utilities.o module_io_wrf.o module_date_time.o module_get_file_names.o module_io_domain.o module_model_constants.o module_MPP.o module_optional_input.o module_compute_geop.o module_soil_pre.o module_check_a_mundo.o module_llxy.o dfi.o mediation_integrate.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o mediation_nest_move.o mediation_wrfmain.o solve_interface.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o input_wrf.o output_wrf.o wrf_timeseries.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_bdyout.o wrf_fddaobs_in.o wrf_bdyin.o wrf_tsin.o landread.o setfeenv.o   ; \
                  else                                                         \
                  ar ru ../main/libwrflib.a module_bc.o module_bc_time_utilities.o module_io_wrf.o module_date_time.o module_get_file_names.o module_io_domain.o module_model_constants.o module_MPP.o module_optional_input.o module_compute_geop.o module_soil_pre.o module_check_a_mundo.o module_llxy.o dfi.o mediation_integrate.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o mediation_nest_move.o mediation_wrfmain.o solve_interface.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o input_wrf.o output_wrf.o wrf_timeseries.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_bdyout.o wrf_fddaobs_in.o wrf_bdyin.o wrf_tsin.o landread.o setfeenv.o             ; \
                fi
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share'
make[1]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" physics
make[1]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
--------------------------------------
( cd phys ; make -i -r  -j 2 )
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys'
if [ 0 -eq 1 ] ; then \
                  make -i -r nmm_contrib                                      ; \
                  ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_bl_ysu.o module_bl_mrf.o module_bl_gfs.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_cu_camuwshcu_driver.o module_cu_camuwshcu.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_tiedtke.o module_cu_gd.o module_cu_nsas.o module_cu_sas.o module_cu_osas.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_HWRF.o module_mp_thompson.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_milbrandt2mom.o module_mp_wdm5.o module_mp_wdm6.o module_ra_sw.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_HWRF.o module_ra_hs.o module_sf_sfclay.o module_sf_gfs.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_oml.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_diagnostics.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_generic.o module_wind_fitch.o    ; \
                else                                                         \
                  make -i -r non_nmm                                          ; \
                  ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_bl_ysu.o module_bl_mrf.o module_bl_gfs.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_cu_camuwshcu_driver.o module_cu_camuwshcu.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_tiedtke.o module_cu_gd.o module_cu_nsas.o module_cu_sas.o module_cu_osas.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_HWRF.o module_mp_thompson.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_milbrandt2mom.o module_mp_wdm5.o module_mp_wdm6.o module_ra_sw.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_HWRF.o module_ra_hs.o module_sf_sfclay.o module_sf_gfs.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_oml.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_diagnostics.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_generic.o module_wind_fitch.o module_fr_sfire_driver.o module_fr_sfire_driver_wrf.o module_fr_sfire_atm.o module_fr_sfire_model.o module_fr_sfire_core.o module_fr_sfire_phys.o module_fr_sfire_util.o              ; \
                fi
make[3]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys'
rm -f module_cam_shr_kind_mod.o
rm -f module_cam_error_function.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_shr_kind_mod.F  > module_cam_shr_kind_mod.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_error_function.F  > module_cam_error_function.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_shr_kind_mod.bb | /lib/cpp -C -P > module_cam_shr_kind_mod.f90
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_error_function.bb | /lib/cpp -C -P > module_cam_error_function.f90
rm -f module_cam_shr_kind_mod.b module_cam_shr_kind_mod.bb
rm -f module_cam_error_function.b module_cam_error_function.bb
if fgrep -iq '!$OMP' module_cam_shr_kind_mod.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_shr_kind_mod.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_shr_kind_mod.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_shr_kind_mod.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_shr_kind_mod.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_shr_kind_mod.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_shr_kind_mod.f90 ; \
        fi
if fgrep -iq '!$OMP' module_cam_error_function.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_error_function.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_error_function.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_error_function.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_error_function.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_error_function.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_error_function.f90 ; \
        fi
rm -f module_bl_ysu.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_ysu.F  > module_bl_ysu.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_ysu.bb | /lib/cpp -C -P > module_bl_ysu.f90
rm -f module_bl_ysu.b module_bl_ysu.bb
if fgrep -iq '!$OMP' module_bl_ysu.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_ysu.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_ysu.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_ysu.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_ysu.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_ysu.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_ysu.f90 ; \
        fi
rm -f module_bl_mrf.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_mrf.F  > module_bl_mrf.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_mrf.bb | /lib/cpp -C -P > module_bl_mrf.f90
rm -f module_bl_mrf.b module_bl_mrf.bb
if fgrep -iq '!$OMP' module_bl_mrf.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_mrf.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_mrf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_mrf.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_mrf.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_mrf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_mrf.f90 ; \
        fi
rm -f module_gfs_machine.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_gfs_machine.F  > module_gfs_machine.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_gfs_machine.bb | /lib/cpp -C -P > module_gfs_machine.f90
rm -f module_gfs_machine.b module_gfs_machine.bb
if fgrep -iq '!$OMP' module_gfs_machine.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_gfs_machine.F WITH OMP ; fi ; \
	  mpif77 -o module_gfs_machine.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_gfs_machine.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_gfs_machine.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_gfs_machine.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_gfs_machine.f90 ; \
        fi
rm -f module_bl_myjpbl.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_myjpbl.F  > module_bl_myjpbl.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_myjpbl.bb | /lib/cpp -C -P > module_bl_myjpbl.f90
rm -f module_bl_myjpbl.b module_bl_myjpbl.bb
if fgrep -iq '!$OMP' module_bl_myjpbl.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_myjpbl.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_myjpbl.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_myjpbl.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_myjpbl.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_myjpbl.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_myjpbl.f90 ; \
        fi
rm -f module_bl_qnsepbl.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_qnsepbl.F  > module_bl_qnsepbl.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_qnsepbl.bb | /lib/cpp -C -P > module_bl_qnsepbl.f90
rm -f module_bl_qnsepbl.b module_bl_qnsepbl.bb
if fgrep -iq '!$OMP' module_bl_qnsepbl.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_qnsepbl.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_qnsepbl.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_qnsepbl.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_qnsepbl.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_qnsepbl.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_qnsepbl.f90 ; \
        fi
rm -f module_bl_acm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_acm.F  > module_bl_acm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_acm.bb | /lib/cpp -C -P > module_bl_acm.f90
rm -f module_bl_acm.b module_bl_acm.bb
if fgrep -iq '!$OMP' module_bl_acm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_acm.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_acm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_acm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_acm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_acm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_acm.f90 ; \
        fi
rm -f module_bl_mynn.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_mynn.F  > module_bl_mynn.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_mynn.bb | /lib/cpp -C -P > module_bl_mynn.f90
rm -f module_bl_mynn.b module_bl_mynn.bb
if fgrep -iq '!$OMP' module_bl_mynn.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_mynn.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_mynn.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_mynn.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_mynn.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_mynn.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_mynn.f90 ; \
        fi
rm -f module_bl_gwdo.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_gwdo.F  > module_bl_gwdo.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_gwdo.bb | /lib/cpp -C -P > module_bl_gwdo.f90
rm -f module_bl_gwdo.b module_bl_gwdo.bb
if fgrep -iq '!$OMP' module_bl_gwdo.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_gwdo.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_gwdo.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_gwdo.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_gwdo.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_gwdo.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_gwdo.f90 ; \
        fi
rm -f module_bl_myjurb.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_myjurb.F  > module_bl_myjurb.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_myjurb.bb | /lib/cpp -C -P > module_bl_myjurb.f90
rm -f module_bl_myjurb.b module_bl_myjurb.bb
if fgrep -iq '!$OMP' module_bl_myjurb.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_myjurb.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_myjurb.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_myjurb.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_myjurb.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_myjurb.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_myjurb.f90 ; \
        fi
rm -f module_bl_boulac.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_boulac.F  > module_bl_boulac.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_boulac.bb | /lib/cpp -C -P > module_bl_boulac.f90
rm -f module_bl_boulac.b module_bl_boulac.bb
if fgrep -iq '!$OMP' module_bl_boulac.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_boulac.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_boulac.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_boulac.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_boulac.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_boulac.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_boulac.f90 ; \
        fi
rm -f module_bl_temf.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_temf.F  > module_bl_temf.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_temf.bb | /lib/cpp -C -P > module_bl_temf.f90
rm -f module_bl_temf.b module_bl_temf.bb
if fgrep -iq '!$OMP' module_bl_temf.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_temf.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_temf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_temf.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_temf.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_temf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_temf.f90 ; \
        fi
rm -f module_cu_g3.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_g3.F  > module_cu_g3.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_g3.bb | /lib/cpp -C -P > module_cu_g3.f90
rm -f module_cu_g3.b module_cu_g3.bb
if fgrep -iq '!$OMP' module_cu_g3.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_g3.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_g3.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_g3.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_g3.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_g3.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_g3.f90 ; \
        fi
rm -f module_cu_kf.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_kf.F  > module_cu_kf.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_kf.bb | /lib/cpp -C -P > module_cu_kf.f90
rm -f module_cu_kf.b module_cu_kf.bb
if fgrep -iq '!$OMP' module_cu_kf.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_kf.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_kf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_kf.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_kf.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_kf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_kf.f90 ; \
        fi
rm -f module_cu_bmj.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_bmj.F  > module_cu_bmj.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_bmj.bb | /lib/cpp -C -P > module_cu_bmj.f90
rm -f module_cu_bmj.b module_cu_bmj.bb
if fgrep -iq '!$OMP' module_cu_bmj.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_bmj.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_bmj.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_bmj.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_bmj.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_bmj.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_bmj.f90 ; \
        fi
rm -f module_cu_kfeta.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_kfeta.F  > module_cu_kfeta.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_kfeta.bb | /lib/cpp -C -P > module_cu_kfeta.f90
rm -f module_cu_kfeta.b module_cu_kfeta.bb
if fgrep -iq '!$OMP' module_cu_kfeta.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_kfeta.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_kfeta.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_kfeta.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_kfeta.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_kfeta.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_kfeta.f90 ; \
        fi
rm -f module_cu_gd.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_gd.F  > module_cu_gd.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_gd.bb | /lib/cpp -C -P > module_cu_gd.f90
rm -f module_cu_gd.b module_cu_gd.bb
if fgrep -iq '!$OMP' module_cu_gd.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_gd.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_gd.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_gd.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_gd.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_gd.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_gd.f90 ; \
        fi
rm -f module_cu_nsas.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_nsas.F  > module_cu_nsas.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_nsas.bb | /lib/cpp -C -P > module_cu_nsas.f90
rm -f module_cu_nsas.b module_cu_nsas.bb
if fgrep -iq '!$OMP' module_cu_nsas.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_nsas.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_nsas.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_nsas.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_nsas.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_nsas.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_nsas.f90 ; \
        fi
rm -f module_mp_kessler.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_kessler.F  > module_mp_kessler.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_kessler.bb | /lib/cpp -C -P > module_mp_kessler.f90
rm -f module_mp_kessler.b module_mp_kessler.bb
if fgrep -iq '!$OMP' module_mp_kessler.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_kessler.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_kessler.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_kessler.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_kessler.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_kessler.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_kessler.f90 ; \
        fi
rm -f module_mp_lin.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_lin.F  > module_mp_lin.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_lin.bb | /lib/cpp -C -P > module_mp_lin.f90
rm -f module_mp_lin.b module_mp_lin.bb
if fgrep -iq '!$OMP' module_mp_lin.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_lin.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_lin.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_lin.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_lin.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_lin.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_lin.f90 ; \
        fi
rm -f module_mp_sbu_ylin.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_sbu_ylin.F  > module_mp_sbu_ylin.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_sbu_ylin.bb | /lib/cpp -C -P > module_mp_sbu_ylin.f90
rm -f module_mp_sbu_ylin.b module_mp_sbu_ylin.bb
if fgrep -iq '!$OMP' module_mp_sbu_ylin.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_sbu_ylin.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_sbu_ylin.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_sbu_ylin.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_sbu_ylin.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_sbu_ylin.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_sbu_ylin.f90 ; \
        fi
rm -f module_mp_wsm3.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_wsm3.F  > module_mp_wsm3.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_wsm3.bb | /lib/cpp -C -P > module_mp_wsm3.f90
rm -f module_mp_wsm3.b module_mp_wsm3.bb
if fgrep -iq '!$OMP' module_mp_wsm3.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_wsm3.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_wsm3.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wsm3.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_wsm3.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_wsm3.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wsm3.f90 ; \
        fi
rm -f module_mp_wsm5.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_wsm5.F  > module_mp_wsm5.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_wsm5.bb | /lib/cpp -C -P > module_mp_wsm5.f90
rm -f module_mp_wsm5.b module_mp_wsm5.bb
if fgrep -iq '!$OMP' module_mp_wsm5.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_wsm5.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_wsm5.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wsm5.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_wsm5.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_wsm5.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wsm5.f90 ; \
        fi
rm -f module_mp_wsm6.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_wsm6.F  > module_mp_wsm6.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_wsm6.bb | /lib/cpp -C -P > module_mp_wsm6.f90
rm -f module_mp_wsm6.b module_mp_wsm6.bb
if fgrep -iq '!$OMP' module_mp_wsm6.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_wsm6.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_wsm6.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wsm6.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_wsm6.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_wsm6.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wsm6.f90 ; \
        fi
rm -f module_mp_etanew.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_etanew.F  > module_mp_etanew.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_etanew.bb | /lib/cpp -C -P > module_mp_etanew.f90
rm -f module_mp_etanew.b module_mp_etanew.bb
if fgrep -iq '!$OMP' module_mp_etanew.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_etanew.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_etanew.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_etanew.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_etanew.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_etanew.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_etanew.f90 ; \
        fi
rm -f module_mp_HWRF.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_HWRF.F  > module_mp_HWRF.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_HWRF.bb | /lib/cpp -C -P > module_mp_HWRF.f90
rm -f module_mp_HWRF.b module_mp_HWRF.bb
if fgrep -iq '!$OMP' module_mp_HWRF.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_HWRF.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_HWRF.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_HWRF.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_HWRF.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_HWRF.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_HWRF.f90 ; \
        fi
rm -f module_mp_thompson.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_thompson.F  > module_mp_thompson.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_thompson.bb | /lib/cpp -C -P > module_mp_thompson.f90
rm -f module_mp_thompson.b module_mp_thompson.bb
if fgrep -iq '!$OMP' module_mp_thompson.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_thompson.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_thompson.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_thompson.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_thompson.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_thompson.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_thompson.f90 ; \
        fi
rm -f module_mp_gsfcgce.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_gsfcgce.F  > module_mp_gsfcgce.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_gsfcgce.bb | /lib/cpp -C -P > module_mp_gsfcgce.f90
rm -f module_mp_gsfcgce.b module_mp_gsfcgce.bb
if fgrep -iq '!$OMP' module_mp_gsfcgce.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_gsfcgce.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_gsfcgce.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_gsfcgce.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_gsfcgce.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_gsfcgce.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_gsfcgce.f90 ; \
        fi
rm -f module_mp_morr_two_moment.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_morr_two_moment.F  > module_mp_morr_two_moment.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_morr_two_moment.bb | /lib/cpp -C -P > module_mp_morr_two_moment.f90
rm -f module_mp_morr_two_moment.b module_mp_morr_two_moment.bb
if fgrep -iq '!$OMP' module_mp_morr_two_moment.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_morr_two_moment.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_morr_two_moment.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_morr_two_moment.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_morr_two_moment.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_morr_two_moment.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_morr_two_moment.f90 ; \
        fi
rm -f module_mp_milbrandt2mom.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_milbrandt2mom.F  > module_mp_milbrandt2mom.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_milbrandt2mom.bb | /lib/cpp -C -P > module_mp_milbrandt2mom.f90
rm -f module_mp_milbrandt2mom.b module_mp_milbrandt2mom.bb
if fgrep -iq '!$OMP' module_mp_milbrandt2mom.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_milbrandt2mom.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_milbrandt2mom.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_milbrandt2mom.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_milbrandt2mom.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_milbrandt2mom.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_milbrandt2mom.f90 ; \
        fi
rm -f module_mp_wdm5.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_wdm5.F  > module_mp_wdm5.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_wdm5.bb | /lib/cpp -C -P > module_mp_wdm5.f90
rm -f module_mp_wdm5.b module_mp_wdm5.bb
if fgrep -iq '!$OMP' module_mp_wdm5.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_wdm5.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_wdm5.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wdm5.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_wdm5.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_wdm5.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wdm5.f90 ; \
        fi
rm -f module_mp_wdm6.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mp_wdm6.F  > module_mp_wdm6.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mp_wdm6.bb | /lib/cpp -C -P > module_mp_wdm6.f90
rm -f module_mp_wdm6.b module_mp_wdm6.bb
if fgrep -iq '!$OMP' module_mp_wdm6.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mp_wdm6.F WITH OMP ; fi ; \
	  mpif77 -o module_mp_wdm6.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wdm6.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mp_wdm6.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mp_wdm6.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mp_wdm6.f90 ; \
        fi
rm -f module_ra_sw.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_sw.F  > module_ra_sw.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_sw.bb | /lib/cpp -C -P > module_ra_sw.f90
rm -f module_ra_sw.b module_ra_sw.bb
if fgrep -iq '!$OMP' module_ra_sw.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_sw.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_sw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_sw.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_sw.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_sw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_sw.f90 ; \
        fi
rm -f module_ra_gsfcsw.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_gsfcsw.F  > module_ra_gsfcsw.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_gsfcsw.bb | /lib/cpp -C -P > module_ra_gsfcsw.f90
rm -f module_ra_gsfcsw.b module_ra_gsfcsw.bb
if fgrep -iq '!$OMP' module_ra_gsfcsw.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_gsfcsw.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_gsfcsw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_gsfcsw.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_gsfcsw.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_gsfcsw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_gsfcsw.f90 ; \
        fi
rm -f module_ra_goddard.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_goddard.F  > module_ra_goddard.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_goddard.bb | /lib/cpp -C -P > module_ra_goddard.f90
rm -f module_ra_goddard.b module_ra_goddard.bb
if fgrep -iq '!$OMP' module_ra_goddard.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_goddard.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_goddard.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_goddard.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_goddard.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_goddard.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_goddard.f90 ; \
        fi
rm -f module_ra_rrtm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_rrtm.F  > module_ra_rrtm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_rrtm.bb | /lib/cpp -C -P > module_ra_rrtm.f90
rm -f module_ra_rrtm.b module_ra_rrtm.bb
if fgrep -iq '!$OMP' module_ra_rrtm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_rrtm.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_rrtm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_rrtm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_rrtm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_rrtm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_rrtm.f90 ; \
        fi
rm -f module_ra_rrtmg_lw.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_rrtmg_lw.F  > module_ra_rrtmg_lw.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_rrtmg_lw.bb | /lib/cpp -C -P > module_ra_rrtmg_lw.f90
rm -f module_ra_rrtmg_lw.b module_ra_rrtmg_lw.bb
if fgrep -iq '!$OMP' module_ra_rrtmg_lw.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_rrtmg_lw.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_rrtmg_lw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_rrtmg_lw.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_rrtmg_lw.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_rrtmg_lw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_rrtmg_lw.f90 ; \
        fi
rm -f module_ra_gfdleta.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_gfdleta.F  > module_ra_gfdleta.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_gfdleta.bb | /lib/cpp -C -P > module_ra_gfdleta.f90
rm -f module_ra_gfdleta.b module_ra_gfdleta.bb
if fgrep -iq '!$OMP' module_ra_gfdleta.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_gfdleta.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_gfdleta.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_gfdleta.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_gfdleta.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_gfdleta.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_gfdleta.f90 ; \
        fi
rm -f module_ra_HWRF.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_HWRF.F  > module_ra_HWRF.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_HWRF.bb | /lib/cpp -C -P > module_ra_HWRF.f90
rm -f module_ra_HWRF.b module_ra_HWRF.bb
if fgrep -iq '!$OMP' module_ra_HWRF.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_HWRF.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_HWRF.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_HWRF.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_HWRF.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_HWRF.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_HWRF.f90 ; \
        fi
rm -f module_ra_hs.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_hs.F  > module_ra_hs.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_hs.bb | /lib/cpp -C -P > module_ra_hs.f90
rm -f module_ra_hs.b module_ra_hs.bb
if fgrep -iq '!$OMP' module_ra_hs.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_hs.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_hs.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_hs.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_hs.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_hs.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_hs.f90 ; \
        fi
rm -f module_sf_sfclay.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_sfclay.F  > module_sf_sfclay.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_sfclay.bb | /lib/cpp -C -P > module_sf_sfclay.f90
rm -f module_sf_sfclay.b module_sf_sfclay.bb
if fgrep -iq '!$OMP' module_sf_sfclay.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_sfclay.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_sfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sfclay.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_sfclay.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_sfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sfclay.f90 ; \
        fi
rm -f module_progtm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_progtm.F  > module_progtm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_progtm.bb | /lib/cpp -C -P > module_progtm.f90
rm -f module_progtm.b module_progtm.bb
if fgrep -iq '!$OMP' module_progtm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_progtm.F WITH OMP ; fi ; \
	  mpif77 -o module_progtm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_progtm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_progtm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_progtm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_progtm.f90 ; \
        fi
rm -f module_sf_slab.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_slab.F  > module_sf_slab.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_slab.bb | /lib/cpp -C -P > module_sf_slab.f90
rm -f module_sf_slab.b module_sf_slab.bb
if fgrep -iq '!$OMP' module_sf_slab.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_slab.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_slab.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_slab.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_slab.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_slab.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_slab.f90 ; \
        fi
rm -f module_sf_noahlsm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_noahlsm.F  > module_sf_noahlsm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_noahlsm.bb | /lib/cpp -C -P > module_sf_noahlsm.f90
rm -f module_sf_noahlsm.b module_sf_noahlsm.bb
if fgrep -iq '!$OMP' module_sf_noahlsm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_noahlsm.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_noahlsm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_noahlsm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_noahlsm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_noahlsm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_noahlsm.f90 ; \
        fi
rm -f module_data_gocart_dust.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_data_gocart_dust.F  > module_data_gocart_dust.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_data_gocart_dust.bb | /lib/cpp -C -P > module_data_gocart_dust.f90
rm -f module_data_gocart_dust.b module_data_gocart_dust.bb
if fgrep -iq '!$OMP' module_data_gocart_dust.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_data_gocart_dust.F WITH OMP ; fi ; \
	  mpif77 -o module_data_gocart_dust.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_data_gocart_dust.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_data_gocart_dust.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_data_gocart_dust.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_data_gocart_dust.f90 ; \
        fi
rm -f module_sf_urban.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_urban.F  > module_sf_urban.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_urban.bb | /lib/cpp -C -P > module_sf_urban.f90
rm -f module_sf_urban.b module_sf_urban.bb
if fgrep -iq '!$OMP' module_sf_urban.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_urban.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_urban.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_urban.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_urban.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_urban.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_urban.f90 ; \
        fi
rm -f module_sf_bem.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_bem.F  > module_sf_bem.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_bem.bb | /lib/cpp -C -P > module_sf_bem.f90
rm -f module_sf_bem.b module_sf_bem.bb
if fgrep -iq '!$OMP' module_sf_bem.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_bem.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_bem.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_bem.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_bem.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_bem.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_bem.f90 ; \
        fi
rm -f module_sf_pxlsm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_pxlsm.F  > module_sf_pxlsm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_pxlsm.bb | /lib/cpp -C -P > module_sf_pxlsm.f90
rm -f module_sf_pxlsm.b module_sf_pxlsm.bb
if fgrep -iq '!$OMP' module_sf_pxlsm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_pxlsm.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_pxlsm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_pxlsm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_pxlsm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_pxlsm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_pxlsm.f90 ; \
        fi
rm -f module_sf_ruclsm.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_ruclsm.F > module_sf_ruclsm.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_ruclsm.b  > module_sf_ruclsm.f90
rm -f module_sf_ruclsm.b
if fgrep -iq '!$OMP' module_sf_ruclsm.f90 ; then \
          echo COMPILING module_sf_ruclsm.F WITH OMP ; \
          if [ -n "" ] ; then echo COMPILING module_sf_ruclsm.F WITH OMP ; fi ; \
	  mpif77 -c  -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_ruclsm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_ruclsm.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  module_sf_ruclsm.f90 ; \
        fi
rm -f module_sf_sfcdiags.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_sfcdiags.F  > module_sf_sfcdiags.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_sfcdiags.bb | /lib/cpp -C -P > module_sf_sfcdiags.f90
rm -f module_sf_sfcdiags.b module_sf_sfcdiags.bb
if fgrep -iq '!$OMP' module_sf_sfcdiags.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_sfcdiags.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_sfcdiags.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sfcdiags.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_sfcdiags.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_sfcdiags.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sfcdiags.f90 ; \
        fi
rm -f module_sf_sfcdiags_ruclsm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_sfcdiags_ruclsm.F  > module_sf_sfcdiags_ruclsm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_sfcdiags_ruclsm.bb | /lib/cpp -C -P > module_sf_sfcdiags_ruclsm.f90
rm -f module_sf_sfcdiags_ruclsm.b module_sf_sfcdiags_ruclsm.bb
if fgrep -iq '!$OMP' module_sf_sfcdiags_ruclsm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_sfcdiags_ruclsm.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_sfcdiags_ruclsm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sfcdiags_ruclsm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_sfcdiags_ruclsm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_sfcdiags_ruclsm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sfcdiags_ruclsm.f90 ; \
        fi
rm -f module_sf_sstskin.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_sstskin.F  > module_sf_sstskin.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_sstskin.bb | /lib/cpp -C -P > module_sf_sstskin.f90
rm -f module_sf_sstskin.b module_sf_sstskin.bb
if fgrep -iq '!$OMP' module_sf_sstskin.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_sstskin.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_sstskin.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sstskin.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_sstskin.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_sstskin.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_sstskin.f90 ; \
        fi
rm -f module_sf_tmnupdate.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_tmnupdate.F  > module_sf_tmnupdate.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_tmnupdate.bb | /lib/cpp -C -P > module_sf_tmnupdate.f90
rm -f module_sf_tmnupdate.b module_sf_tmnupdate.bb
if fgrep -iq '!$OMP' module_sf_tmnupdate.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_tmnupdate.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_tmnupdate.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_tmnupdate.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_tmnupdate.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_tmnupdate.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_tmnupdate.f90 ; \
        fi
rm -f module_sf_oml.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_oml.F  > module_sf_oml.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_oml.bb | /lib/cpp -C -P > module_sf_oml.f90
rm -f module_sf_oml.b module_sf_oml.bb
if fgrep -iq '!$OMP' module_sf_oml.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_oml.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_oml.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_oml.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_oml.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_oml.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_oml.f90 ; \
        fi
rm -f module_sf_myjsfc.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_myjsfc.F  > module_sf_myjsfc.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_myjsfc.bb | /lib/cpp -C -P > module_sf_myjsfc.f90
rm -f module_sf_myjsfc.b module_sf_myjsfc.bb
if fgrep -iq '!$OMP' module_sf_myjsfc.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_myjsfc.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_myjsfc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_myjsfc.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_myjsfc.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_myjsfc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_myjsfc.f90 ; \
        fi
rm -f module_sf_qnsesfc.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_qnsesfc.F  > module_sf_qnsesfc.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_qnsesfc.bb | /lib/cpp -C -P > module_sf_qnsesfc.f90
rm -f module_sf_qnsesfc.b module_sf_qnsesfc.bb
if fgrep -iq '!$OMP' module_sf_qnsesfc.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_qnsesfc.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_qnsesfc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_qnsesfc.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_qnsesfc.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_qnsesfc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_qnsesfc.f90 ; \
        fi
rm -f module_sf_mynn.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_mynn.F  > module_sf_mynn.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_mynn.bb | /lib/cpp -C -P > module_sf_mynn.f90
rm -f module_sf_mynn.b module_sf_mynn.bb
if fgrep -iq '!$OMP' module_sf_mynn.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_mynn.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_mynn.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_mynn.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_mynn.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_mynn.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_mynn.f90 ; \
        fi
rm -f module_sf_pxsfclay.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_pxsfclay.F  > module_sf_pxsfclay.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_pxsfclay.bb | /lib/cpp -C -P > module_sf_pxsfclay.f90
rm -f module_sf_pxsfclay.b module_sf_pxsfclay.bb
if fgrep -iq '!$OMP' module_sf_pxsfclay.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_pxsfclay.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_pxsfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_pxsfclay.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_pxsfclay.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_pxsfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_pxsfclay.f90 ; \
        fi
rm -f module_sf_temfsfclay.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_temfsfclay.F  > module_sf_temfsfclay.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_temfsfclay.bb | /lib/cpp -C -P > module_sf_temfsfclay.f90
rm -f module_sf_temfsfclay.b module_sf_temfsfclay.bb
if fgrep -iq '!$OMP' module_sf_temfsfclay.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_temfsfclay.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_temfsfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_temfsfclay.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_temfsfclay.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_temfsfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_temfsfclay.f90 ; \
        fi
rm -f module_sf_idealscmsfclay.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_idealscmsfclay.F  > module_sf_idealscmsfclay.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_idealscmsfclay.bb | /lib/cpp -C -P > module_sf_idealscmsfclay.f90
rm -f module_sf_idealscmsfclay.b module_sf_idealscmsfclay.bb
if fgrep -iq '!$OMP' module_sf_idealscmsfclay.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_idealscmsfclay.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_idealscmsfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_idealscmsfclay.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_idealscmsfclay.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_idealscmsfclay.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_idealscmsfclay.f90 ; \
        fi
rm -f module_physics_addtendc.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_physics_addtendc.F  > module_physics_addtendc.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_physics_addtendc.bb | /lib/cpp -C -P > module_physics_addtendc.f90
rm -f module_physics_addtendc.b module_physics_addtendc.bb
if fgrep -iq '!$OMP' module_physics_addtendc.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_physics_addtendc.F WITH OMP ; fi ; \
	  mpif77 -o module_physics_addtendc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_physics_addtendc.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_physics_addtendc.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_physics_addtendc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_physics_addtendc.f90 ; \
        fi
rm -f module_fdda_psufddagd.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fdda_psufddagd.F  > module_fdda_psufddagd.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fdda_psufddagd.bb | /lib/cpp -C -P > module_fdda_psufddagd.f90
rm -f module_fdda_psufddagd.b module_fdda_psufddagd.bb
if fgrep -iq '!$OMP' module_fdda_psufddagd.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fdda_psufddagd.F WITH OMP ; fi ; \
	  mpif77 -o module_fdda_psufddagd.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fdda_psufddagd.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fdda_psufddagd.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fdda_psufddagd.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fdda_psufddagd.f90 ; \
        fi
rm -f module_fdda_spnudging.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fdda_spnudging.F  > module_fdda_spnudging.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fdda_spnudging.bb | /lib/cpp -C -P > module_fdda_spnudging.f90
rm -f module_fdda_spnudging.b module_fdda_spnudging.bb
if fgrep -iq '!$OMP' module_fdda_spnudging.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fdda_spnudging.F WITH OMP ; fi ; \
	  mpif77 -o module_fdda_spnudging.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fdda_spnudging.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fdda_spnudging.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fdda_spnudging.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fdda_spnudging.f90 ; \
        fi
rm -f module_fddaobs_rtfdda.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fddaobs_rtfdda.F > module_fddaobs_rtfdda.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fddaobs_rtfdda.b  > module_fddaobs_rtfdda.f90
rm -f module_fddaobs_rtfdda.b
if fgrep -iq '!$OMP' module_fddaobs_rtfdda.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fddaobs_rtfdda.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fddaobs_rtfdda.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fddaobs_rtfdda.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  module_fddaobs_rtfdda.f90 ; \
        fi
rm -f module_wind_generic.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_wind_generic.F  > module_wind_generic.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_wind_generic.bb | /lib/cpp -C -P > module_wind_generic.f90
rm -f module_wind_generic.b module_wind_generic.bb
if fgrep -iq '!$OMP' module_wind_generic.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_wind_generic.F WITH OMP ; fi ; \
	  mpif77 -o module_wind_generic.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_wind_generic.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_wind_generic.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_wind_generic.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_wind_generic.f90 ; \
        fi
rm -f module_microphysics_zero_out.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_microphysics_zero_out.F  > module_microphysics_zero_out.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_microphysics_zero_out.bb | /lib/cpp -C -P > module_microphysics_zero_out.f90
rm -f module_microphysics_zero_out.b module_microphysics_zero_out.bb
if fgrep -iq '!$OMP' module_microphysics_zero_out.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_microphysics_zero_out.F WITH OMP ; fi ; \
	  mpif77 -o module_microphysics_zero_out.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_microphysics_zero_out.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_microphysics_zero_out.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_microphysics_zero_out.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_microphysics_zero_out.f90 ; \
        fi
rm -f module_diagnostics.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_diagnostics.F  > module_diagnostics.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_diagnostics.bb | /lib/cpp -C -P > module_diagnostics.f90
rm -f module_diagnostics.b module_diagnostics.bb
if fgrep -iq '!$OMP' module_diagnostics.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_diagnostics.F WITH OMP ; fi ; \
	  mpif77 -o module_diagnostics.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_diagnostics.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_diagnostics.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_diagnostics.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_diagnostics.f90 ; \
        fi
rm -f module_fddagd_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fddagd_driver.F  > module_fddagd_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fddagd_driver.bb | /lib/cpp -C -P > module_fddagd_driver.f90
rm -f module_fddagd_driver.b module_fddagd_driver.bb
if fgrep -iq '!$OMP' module_fddagd_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fddagd_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_fddagd_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fddagd_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fddagd_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fddagd_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fddagd_driver.f90 ; \
        fi
rm -f module_fddaobs_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fddaobs_driver.F  > module_fddaobs_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fddaobs_driver.bb | /lib/cpp -C -P > module_fddaobs_driver.f90
rm -f module_fddaobs_driver.b module_fddaobs_driver.bb
if fgrep -iq '!$OMP' module_fddaobs_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fddaobs_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_fddaobs_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fddaobs_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fddaobs_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fddaobs_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fddaobs_driver.f90 ; \
        fi
rm -f module_fr_sfire_util.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fr_sfire_util.F  > module_fr_sfire_util.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fr_sfire_util.bb | /lib/cpp -C -P > module_fr_sfire_util.f90
rm -f module_fr_sfire_util.b module_fr_sfire_util.bb
if fgrep -iq '!$OMP' module_fr_sfire_util.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_util.F WITH OMP ; fi ; \
	  mpif77 -o module_fr_sfire_util.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_util.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_util.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fr_sfire_util.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_util.f90 ; \
        fi
rm -f module_cam_support.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_support.F  > module_cam_support.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_support.bb | /lib/cpp -C -P > module_cam_support.f90
rm -f module_cam_support.b module_cam_support.bb
if fgrep -iq '!$OMP' module_cam_support.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_support.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_support.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_support.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_support.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_support.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_support.f90 ; \
        fi
rm -f module_cam_shr_const_mod.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_shr_const_mod.F  > module_cam_shr_const_mod.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_shr_const_mod.bb | /lib/cpp -C -P > module_cam_shr_const_mod.f90
rm -f module_cam_shr_const_mod.b module_cam_shr_const_mod.bb
if fgrep -iq '!$OMP' module_cam_shr_const_mod.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_shr_const_mod.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_shr_const_mod.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_shr_const_mod.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_shr_const_mod.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_shr_const_mod.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_shr_const_mod.f90 ; \
        fi
rm -f module_cam_trb_mtn_stress.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_trb_mtn_stress.F  > module_cam_trb_mtn_stress.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_trb_mtn_stress.bb | /lib/cpp -C -P > module_cam_trb_mtn_stress.f90
rm -f module_cam_trb_mtn_stress.b module_cam_trb_mtn_stress.bb
if fgrep -iq '!$OMP' module_cam_trb_mtn_stress.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_trb_mtn_stress.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_trb_mtn_stress.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_trb_mtn_stress.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_trb_mtn_stress.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_trb_mtn_stress.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_trb_mtn_stress.f90 ; \
        fi
rm -f module_cam_upper_bc.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_upper_bc.F  > module_cam_upper_bc.bb
rm -f module_cam_bl_diffusion_solver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_bl_diffusion_solver.F  > module_cam_bl_diffusion_solver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_upper_bc.bb | /lib/cpp -C -P > module_cam_upper_bc.f90
rm -f module_cam_upper_bc.b module_cam_upper_bc.bb
if fgrep -iq '!$OMP' module_cam_upper_bc.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_upper_bc.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_upper_bc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_upper_bc.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_upper_bc.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_upper_bc.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_upper_bc.f90 ; \
        fi
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_bl_diffusion_solver.bb | /lib/cpp -C -P > module_cam_bl_diffusion_solver.f90
rm -f module_gfs_physcons.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_gfs_physcons.F  > module_gfs_physcons.bb
rm -f module_cam_bl_diffusion_solver.b module_cam_bl_diffusion_solver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_gfs_physcons.bb | /lib/cpp -C -P > module_gfs_physcons.f90
if fgrep -iq '!$OMP' module_cam_bl_diffusion_solver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_bl_diffusion_solver.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_bl_diffusion_solver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_bl_diffusion_solver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_bl_diffusion_solver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_bl_diffusion_solver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_bl_diffusion_solver.f90 ; \
        fi
rm -f module_gfs_physcons.b module_gfs_physcons.bb
if fgrep -iq '!$OMP' module_gfs_physcons.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_gfs_physcons.F WITH OMP ; fi ; \
	  mpif77 -o module_gfs_physcons.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_gfs_physcons.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_gfs_physcons.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_gfs_physcons.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_gfs_physcons.f90 ; \
        fi
rm -f module_ra_rrtmg_sw.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_rrtmg_sw.F  > module_ra_rrtmg_sw.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_rrtmg_sw.bb | /lib/cpp -C -P > module_ra_rrtmg_sw.f90
rm -f module_ra_rrtmg_sw.b module_ra_rrtmg_sw.bb
if fgrep -iq '!$OMP' module_ra_rrtmg_sw.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_rrtmg_sw.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_rrtmg_sw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_rrtmg_sw.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_rrtmg_sw.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_rrtmg_sw.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_rrtmg_sw.f90 ; \
        fi
rm -f module_ra_cam_support.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_cam_support.F  > module_ra_cam_support.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_cam_support.bb | /lib/cpp -C -P > module_ra_cam_support.f90
rm -f module_ra_cam_support.b module_ra_cam_support.bb
if fgrep -iq '!$OMP' module_ra_cam_support.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_cam_support.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_cam_support.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_cam_support.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_cam_support.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_cam_support.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_cam_support.f90 ; \
        fi
rm -f module_sf_bep.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_bep.F  > module_sf_bep.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_bep.bb | /lib/cpp -C -P > module_sf_bep.f90
rm -f module_sf_bep.b module_sf_bep.bb
if fgrep -iq '!$OMP' module_sf_bep.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_bep.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_bep.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_bep.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_bep.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_bep.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_bep.f90 ; \
        fi
rm -f module_sf_bep_bem.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_bep_bem.F  > module_sf_bep_bem.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_bep_bem.bb | /lib/cpp -C -P > module_sf_bep_bem.f90
rm -f module_sf_bep_bem.b module_sf_bep_bem.bb
if fgrep -iq '!$OMP' module_sf_bep_bem.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_bep_bem.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_bep_bem.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_bep_bem.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_bep_bem.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_bep_bem.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_bep_bem.f90 ; \
        fi
rm -f module_wind_fitch.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_wind_fitch.F  > module_wind_fitch.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_wind_fitch.bb | /lib/cpp -C -P > module_wind_fitch.f90
rm -f module_wind_fitch.b module_wind_fitch.bb
if fgrep -iq '!$OMP' module_wind_fitch.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_wind_fitch.F WITH OMP ; fi ; \
	  mpif77 -o module_wind_fitch.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_wind_fitch.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_wind_fitch.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_wind_fitch.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_wind_fitch.f90 ; \
        fi
rm -f module_fr_sfire_phys.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fr_sfire_phys.F  > module_fr_sfire_phys.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fr_sfire_phys.bb | /lib/cpp -C -P > module_fr_sfire_phys.f90
rm -f module_fr_sfire_phys.b module_fr_sfire_phys.bb
if fgrep -iq '!$OMP' module_fr_sfire_phys.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_phys.F WITH OMP ; fi ; \
	  mpif77 -o module_fr_sfire_phys.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_phys.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_phys.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fr_sfire_phys.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_phys.f90 ; \
        fi
rm -f module_fr_sfire_atm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fr_sfire_atm.F  > module_fr_sfire_atm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fr_sfire_atm.bb | /lib/cpp -C -P > module_fr_sfire_atm.f90
rm -f module_fr_sfire_atm.b module_fr_sfire_atm.bb
if fgrep -iq '!$OMP' module_fr_sfire_atm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_atm.F WITH OMP ; fi ; \
	  mpif77 -o module_fr_sfire_atm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_atm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_atm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fr_sfire_atm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_atm.f90 ; \
        fi
rm -f module_cam_physconst.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_physconst.F  > module_cam_physconst.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_physconst.bb | /lib/cpp -C -P > module_cam_physconst.f90
rm -f module_cam_physconst.b module_cam_physconst.bb
if fgrep -iq '!$OMP' module_cam_physconst.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_physconst.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_physconst.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_physconst.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_physconst.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_physconst.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_physconst.f90 ; \
        fi
rm -f module_cam_bl_eddy_diff.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_bl_eddy_diff.F  > module_cam_bl_eddy_diff.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_bl_eddy_diff.bb | /lib/cpp -C -P > module_cam_bl_eddy_diff.f90
rm -f module_cam_bl_eddy_diff.b module_cam_bl_eddy_diff.bb
if fgrep -iq '!$OMP' module_cam_bl_eddy_diff.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_bl_eddy_diff.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_bl_eddy_diff.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_bl_eddy_diff.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_bl_eddy_diff.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_bl_eddy_diff.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_bl_eddy_diff.f90 ; \
        fi
rm -f module_bl_gfs.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_gfs.F  > module_bl_gfs.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_gfs.bb | /lib/cpp -C -P > module_bl_gfs.f90
rm -f module_bl_gfs.b module_bl_gfs.bb
if fgrep -iq '!$OMP' module_bl_gfs.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_gfs.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_gfs.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_gfs.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_gfs.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_gfs.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_gfs.f90 ; \
        fi
rm -f module_gfs_funcphys.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_gfs_funcphys.F  > module_gfs_funcphys.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_gfs_funcphys.bb | /lib/cpp -C -P > module_gfs_funcphys.f90
rm -f module_gfs_funcphys.b module_gfs_funcphys.bb
if fgrep -iq '!$OMP' module_gfs_funcphys.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_gfs_funcphys.F WITH OMP ; fi ; \
	  mpif77 -o module_gfs_funcphys.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_gfs_funcphys.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_gfs_funcphys.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_gfs_funcphys.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_gfs_funcphys.f90 ; \
        fi
rm -f module_ra_cam.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_ra_cam.F  > module_ra_cam.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_ra_cam.bb | /lib/cpp -C -P > module_ra_cam.f90
rm -f module_ra_cam.b module_ra_cam.bb
if fgrep -iq '!$OMP' module_ra_cam.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_ra_cam.F WITH OMP ; fi ; \
	  mpif77 -o module_ra_cam.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_cam.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_ra_cam.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_ra_cam.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_ra_cam.f90 ; \
        fi
rm -f module_sf_gfs.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_gfs.F  > module_sf_gfs.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_gfs.bb | /lib/cpp -C -P > module_sf_gfs.f90
rm -f module_sf_gfs.b module_sf_gfs.bb
if fgrep -iq '!$OMP' module_sf_gfs.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_gfs.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_gfs.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_gfs.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_gfs.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_gfs.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_gfs.f90 ; \
        fi
rm -f module_sf_gfdl.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_gfdl.F  > module_sf_gfdl.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_gfdl.bb | /lib/cpp -C -P > module_sf_gfdl.f90
rm -f module_sf_gfdl.b module_sf_gfdl.bb
if fgrep -iq '!$OMP' module_sf_gfdl.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_gfdl.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_gfdl.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_gfdl.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_gfdl.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_gfdl.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_gfdl.f90 ; \
        fi
rm -f module_sf_noahdrv.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sf_noahdrv.F  > module_sf_noahdrv.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sf_noahdrv.bb | /lib/cpp -C -P > module_sf_noahdrv.f90
rm -f module_sf_noahdrv.b module_sf_noahdrv.bb
if fgrep -iq '!$OMP' module_sf_noahdrv.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sf_noahdrv.F WITH OMP ; fi ; \
	  mpif77 -o module_sf_noahdrv.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_noahdrv.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sf_noahdrv.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sf_noahdrv.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sf_noahdrv.f90 ; \
        fi
rm -f module_fr_sfire_core.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fr_sfire_core.F  > module_fr_sfire_core.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fr_sfire_core.bb | /lib/cpp -C -P > module_fr_sfire_core.f90
rm -f module_fr_sfire_core.b module_fr_sfire_core.bb
if fgrep -iq '!$OMP' module_fr_sfire_core.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_core.F WITH OMP ; fi ; \
	  mpif77 -o module_fr_sfire_core.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_core.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_core.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fr_sfire_core.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_core.f90 ; \
        fi
rm -f module_cam_gffgch.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_gffgch.F  > module_cam_gffgch.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_gffgch.bb | /lib/cpp -C -P > module_cam_gffgch.f90
rm -f module_cam_gffgch.b module_cam_gffgch.bb
if fgrep -iq '!$OMP' module_cam_gffgch.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_gffgch.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_gffgch.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_gffgch.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_gffgch.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_gffgch.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_gffgch.f90 ; \
        fi
rm -f module_cam_constituents.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_constituents.F  > module_cam_constituents.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_constituents.bb | /lib/cpp -C -P > module_cam_constituents.f90
rm -f module_cam_constituents.b module_cam_constituents.bb
if fgrep -iq '!$OMP' module_cam_constituents.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_constituents.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_constituents.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_constituents.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_constituents.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_constituents.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_constituents.f90 ; \
        fi
rm -f module_cu_tiedtke.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_tiedtke.F  > module_cu_tiedtke.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_tiedtke.bb | /lib/cpp -C -P > module_cu_tiedtke.f90
rm -f module_cu_tiedtke.b module_cu_tiedtke.bb
if fgrep -iq '!$OMP' module_cu_tiedtke.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_tiedtke.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_tiedtke.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_tiedtke.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_tiedtke.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_tiedtke.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_tiedtke.f90 ; \
        fi
rm -f module_cu_sas.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_sas.F  > module_cu_sas.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_sas.bb | /lib/cpp -C -P > module_cu_sas.f90
rm -f module_cu_sas.b module_cu_sas.bb
if fgrep -iq '!$OMP' module_cu_sas.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_sas.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_sas.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_sas.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_sas.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_sas.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_sas.f90 ; \
        fi
rm -f module_cu_osas.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_osas.F  > module_cu_osas.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_osas.bb | /lib/cpp -C -P > module_cu_osas.f90
rm -f module_cu_osas.b module_cu_osas.bb
if fgrep -iq '!$OMP' module_cu_osas.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_osas.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_osas.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_osas.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_osas.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_osas.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_osas.f90 ; \
        fi
rm -f module_radiation_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_radiation_driver.F  > module_radiation_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_radiation_driver.bb | /lib/cpp -C -P > module_radiation_driver.f90
rm -f module_radiation_driver.b module_radiation_driver.bb
if fgrep -iq '!$OMP' module_radiation_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_radiation_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_radiation_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_radiation_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_radiation_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_radiation_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_radiation_driver.f90 ; \
        fi
rm -f module_surface_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_surface_driver.F  > module_surface_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_surface_driver.bb | /lib/cpp -C -P > module_surface_driver.f90
rm -f module_surface_driver.b module_surface_driver.bb
if fgrep -iq '!$OMP' module_surface_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_surface_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_surface_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_surface_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_surface_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_surface_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_surface_driver.f90 ; \
        fi
rm -f module_fr_sfire_model.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fr_sfire_model.F  > module_fr_sfire_model.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fr_sfire_model.bb | /lib/cpp -C -P > module_fr_sfire_model.f90
rm -f module_fr_sfire_model.b module_fr_sfire_model.bb
if fgrep -iq '!$OMP' module_fr_sfire_model.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_model.F WITH OMP ; fi ; \
	  mpif77 -o module_fr_sfire_model.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_model.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_model.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fr_sfire_model.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_model.f90 ; \
        fi
rm -f module_cam_wv_saturation.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_wv_saturation.F  > module_cam_wv_saturation.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_wv_saturation.bb | /lib/cpp -C -P > module_cam_wv_saturation.f90
rm -f module_cam_wv_saturation.b module_cam_wv_saturation.bb
if fgrep -iq '!$OMP' module_cam_wv_saturation.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_wv_saturation.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_wv_saturation.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_wv_saturation.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_wv_saturation.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_wv_saturation.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_wv_saturation.f90 ; \
        fi
rm -f module_cam_molec_diff.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_molec_diff.F  > module_cam_molec_diff.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_molec_diff.bb | /lib/cpp -C -P > module_cam_molec_diff.f90
rm -f module_cam_molec_diff.b module_cam_molec_diff.bb
if fgrep -iq '!$OMP' module_cam_molec_diff.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_molec_diff.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_molec_diff.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_molec_diff.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_molec_diff.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_molec_diff.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_molec_diff.f90 ; \
        fi
rm -f module_mixactivate.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_mixactivate.F  > module_mixactivate.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_mixactivate.bb | /lib/cpp -C -P > module_mixactivate.f90
rm -f module_mixactivate.b module_mixactivate.bb
if fgrep -iq '!$OMP' module_mixactivate.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_mixactivate.F WITH OMP ; fi ; \
	  mpif77 -o module_mixactivate.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mixactivate.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_mixactivate.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_mixactivate.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_mixactivate.f90 ; \
        fi
rm -f module_fr_sfire_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fr_sfire_driver.F  > module_fr_sfire_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fr_sfire_driver.bb | /lib/cpp -C -P > module_fr_sfire_driver.f90
rm -f module_fr_sfire_driver.b module_fr_sfire_driver.bb
if fgrep -iq '!$OMP' module_fr_sfire_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_fr_sfire_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fr_sfire_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_driver.f90 ; \
        fi
rm -f module_cam_cldwat.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_cldwat.F  > module_cam_cldwat.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_cldwat.bb | /lib/cpp -C -P > module_cam_cldwat.f90
rm -f module_cam_cldwat.b module_cam_cldwat.bb
if fgrep -iq '!$OMP' module_cam_cldwat.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_cldwat.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_cldwat.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_cldwat.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_cldwat.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_cldwat.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_cldwat.f90 ; \
        fi
rm -f module_cam_esinti.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cam_esinti.F  > module_cam_esinti.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cam_esinti.bb | /lib/cpp -C -P > module_cam_esinti.f90
rm -f module_cam_esinti.b module_cam_esinti.bb
if fgrep -iq '!$OMP' module_cam_esinti.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cam_esinti.F WITH OMP ; fi ; \
	  mpif77 -o module_cam_esinti.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_esinti.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cam_esinti.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cam_esinti.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cam_esinti.f90 ; \
        fi
rm -f module_cu_camzm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_camzm.F  > module_cu_camzm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_camzm.bb | /lib/cpp -C -P > module_cu_camzm.f90
rm -f module_cu_camzm.b module_cu_camzm.bb
if fgrep -iq '!$OMP' module_cu_camzm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_camzm.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_camzm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camzm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_camzm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_camzm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camzm.f90 ; \
        fi
rm -f module_microphysics_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_microphysics_driver.F  > module_microphysics_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_microphysics_driver.bb | /lib/cpp -C -P > module_microphysics_driver.f90
rm -f module_microphysics_driver.b module_microphysics_driver.bb
if fgrep -iq '!$OMP' module_microphysics_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_microphysics_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_microphysics_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_microphysics_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_microphysics_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_microphysics_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_microphysics_driver.f90 ; \
        fi
rm -f module_fr_sfire_driver_wrf.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_fr_sfire_driver_wrf.F  > module_fr_sfire_driver_wrf.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_fr_sfire_driver_wrf.bb | /lib/cpp -C -P > module_fr_sfire_driver_wrf.f90
rm -f module_fr_sfire_driver_wrf.b module_fr_sfire_driver_wrf.bb
if fgrep -iq '!$OMP' module_fr_sfire_driver_wrf.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_driver_wrf.F WITH OMP ; fi ; \
	  mpif77 -o module_fr_sfire_driver_wrf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_driver_wrf.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_fr_sfire_driver_wrf.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_fr_sfire_driver_wrf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_fr_sfire_driver_wrf.f90 ; \
        fi
rm -f module_bl_camuwpbl_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bl_camuwpbl_driver.F  > module_bl_camuwpbl_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bl_camuwpbl_driver.bb | /lib/cpp -C -P > module_bl_camuwpbl_driver.f90
rm -f module_bl_camuwpbl_driver.b module_bl_camuwpbl_driver.bb
if fgrep -iq '!$OMP' module_bl_camuwpbl_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bl_camuwpbl_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_bl_camuwpbl_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_camuwpbl_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bl_camuwpbl_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bl_camuwpbl_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bl_camuwpbl_driver.f90 ; \
        fi
rm -f module_cu_camuwshcu.o
rm -f module_cu_camzm_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_camuwshcu.F  > module_cu_camuwshcu.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_camzm_driver.F  > module_cu_camzm_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_camzm_driver.bb | /lib/cpp -C -P > module_cu_camzm_driver.f90
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_camuwshcu.bb | /lib/cpp -C -P > module_cu_camuwshcu.f90
rm -f module_cu_camzm_driver.b module_cu_camzm_driver.bb
if fgrep -iq '!$OMP' module_cu_camzm_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_camzm_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_camzm_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camzm_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_camzm_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_camzm_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camzm_driver.f90 ; \
        fi
rm -f module_cu_camuwshcu.b module_cu_camuwshcu.bb
if fgrep -iq '!$OMP' module_cu_camuwshcu.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_camuwshcu.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_camuwshcu.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camuwshcu.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_camuwshcu.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_camuwshcu.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camuwshcu.f90 ; \
        fi
rm -f module_pbl_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_pbl_driver.F  > module_pbl_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_pbl_driver.bb | /lib/cpp -C -P > module_pbl_driver.f90
rm -f module_pbl_driver.b module_pbl_driver.bb
if fgrep -iq '!$OMP' module_pbl_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_pbl_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_pbl_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_pbl_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_pbl_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_pbl_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_pbl_driver.f90 ; \
        fi
rm -f module_cumulus_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cumulus_driver.F  > module_cumulus_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cumulus_driver.bb | /lib/cpp -C -P > module_cumulus_driver.f90
rm -f module_cumulus_driver.b module_cumulus_driver.bb
if fgrep -iq '!$OMP' module_cumulus_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cumulus_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_cumulus_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cumulus_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cumulus_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cumulus_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cumulus_driver.f90 ; \
        fi
rm -f module_cu_camuwshcu_driver.o
rm -f module_physics_init.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_cu_camuwshcu_driver.F  > module_cu_camuwshcu_driver.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_physics_init.F  > module_physics_init.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_cu_camuwshcu_driver.bb | /lib/cpp -C -P > module_cu_camuwshcu_driver.f90
rm -f module_cu_camuwshcu_driver.b module_cu_camuwshcu_driver.bb
if fgrep -iq '!$OMP' module_cu_camuwshcu_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_cu_camuwshcu_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_cu_camuwshcu_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camuwshcu_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_cu_camuwshcu_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_cu_camuwshcu_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_cu_camuwshcu_driver.f90 ; \
        fi
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_physics_init.bb | /lib/cpp -C -P > module_physics_init.f90
rm -f module_physics_init.b module_physics_init.bb
mpif77 -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include module_physics_init.f90
rm -f module_shallowcu_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_shallowcu_driver.F  > module_shallowcu_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_shallowcu_driver.bb | /lib/cpp -C -P > module_shallowcu_driver.f90
rm -f module_shallowcu_driver.b module_shallowcu_driver.bb
if fgrep -iq '!$OMP' module_shallowcu_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_shallowcu_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_shallowcu_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_shallowcu_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_shallowcu_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_shallowcu_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_shallowcu_driver.f90 ; \
        fi
make[3]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys'
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys'
make[1]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
if [ 0  -eq 1 ]    ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" chemics ; fi
if [ 1 -eq 1 ]    ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" em_core ; fi
make[1]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
--------------------------------------
if [ 0  -eq 0 ] ; then \
		CF= ; \
	else \
		CF=../chem/module_aerosols_sorgam.o ../chem/module_gocart_aerosols.o ../chem/module_mosaic_driver.o ../chem/module_input_tracer.o ; \
	fi
( cd dyn_em ; make -i -r -j 2 CF="" )
make[2]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/dyn_em'
rm -f module_advect_em.o
rm -f module_big_step_utilities_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_advect_em.F  > module_advect_em.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_big_step_utilities_em.F  > module_big_step_utilities_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_big_step_utilities_em.bb | /lib/cpp -C -P > module_big_step_utilities_em.f90
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_advect_em.bb | /lib/cpp -C -P > module_advect_em.f90
rm -f module_big_step_utilities_em.b module_big_step_utilities_em.bb
if fgrep -iq '!$OMP' module_big_step_utilities_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_big_step_utilities_em.F WITH OMP ; fi ; \
	  mpif77 -o module_big_step_utilities_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_big_step_utilities_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_big_step_utilities_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_big_step_utilities_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_big_step_utilities_em.f90 ; \
        fi
rm -f module_advect_em.b module_advect_em.bb
if fgrep -iq '!$OMP' module_advect_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_advect_em.F WITH OMP ; fi ; \
	  mpif77 -o module_advect_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_advect_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_advect_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_advect_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_advect_em.f90 ; \
        fi
rm -f module_small_step_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_small_step_em.F  > module_small_step_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_small_step_em.bb | /lib/cpp -C -P > module_small_step_em.f90
rm -f module_small_step_em.b module_small_step_em.bb
if fgrep -iq '!$OMP' module_small_step_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_small_step_em.F WITH OMP ; fi ; \
	  mpif77 -o module_small_step_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_small_step_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_small_step_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_small_step_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_small_step_em.f90 ; \
        fi
rm -f module_damping_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_damping_em.F  > module_damping_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_damping_em.bb | /lib/cpp -C -P > module_damping_em.f90
rm -f module_damping_em.b module_damping_em.bb
if fgrep -iq '!$OMP' module_damping_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_damping_em.F WITH OMP ; fi ; \
	  mpif77 -o module_damping_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_damping_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_damping_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_damping_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_damping_em.f90 ; \
        fi
rm -f module_solvedebug_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_solvedebug_em.F  > module_solvedebug_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_solvedebug_em.bb | /lib/cpp -C -P > module_solvedebug_em.f90
rm -f module_solvedebug_em.b module_solvedebug_em.bb
if fgrep -iq '!$OMP' module_solvedebug_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_solvedebug_em.F WITH OMP ; fi ; \
	  mpif77 -o module_solvedebug_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_solvedebug_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_solvedebug_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_solvedebug_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_solvedebug_em.f90 ; \
        fi
rm -f module_bc_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_bc_em.F  > module_bc_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_bc_em.bb | /lib/cpp -C -P > module_bc_em.f90
rm -f module_bc_em.b module_bc_em.bb
if fgrep -iq '!$OMP' module_bc_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_bc_em.F WITH OMP ; fi ; \
	  mpif77 -o module_bc_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bc_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_bc_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_bc_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_bc_em.f90 ; \
        fi
rm -f module_init_utilities.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_init_utilities.F  > module_init_utilities.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_init_utilities.bb | /lib/cpp -C -P > module_init_utilities.f90
rm -f module_init_utilities.b module_init_utilities.bb
if fgrep -iq '!$OMP' module_init_utilities.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_init_utilities.F WITH OMP ; fi ; \
	  mpif77 -o module_init_utilities.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_init_utilities.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_init_utilities.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_init_utilities.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_init_utilities.f90 ; \
        fi
rm -f module_polarfft.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_polarfft.F  > module_polarfft.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_polarfft.bb | /lib/cpp -C -P > module_polarfft.f90
rm -f module_polarfft.b module_polarfft.bb
if fgrep -iq '!$OMP' module_polarfft.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_polarfft.F WITH OMP ; fi ; \
	  mpif77 -o module_polarfft.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_polarfft.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_polarfft.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_polarfft.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_polarfft.f90 ; \
        fi
rm -f module_force_scm.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_force_scm.F  > module_force_scm.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_force_scm.bb | /lib/cpp -C -P > module_force_scm.f90
rm -f module_force_scm.b module_force_scm.bb
if fgrep -iq '!$OMP' module_force_scm.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_force_scm.F WITH OMP ; fi ; \
	  mpif77 -o module_force_scm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_force_scm.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_force_scm.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_force_scm.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_force_scm.f90 ; \
        fi
rm -f module_convtrans_prep.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_convtrans_prep.F  > module_convtrans_prep.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_convtrans_prep.bb | /lib/cpp -C -P > module_convtrans_prep.f90
rm -f module_convtrans_prep.b module_convtrans_prep.bb
if fgrep -iq '!$OMP' module_convtrans_prep.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_convtrans_prep.F WITH OMP ; fi ; \
	  mpif77 -o module_convtrans_prep.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_convtrans_prep.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_convtrans_prep.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_convtrans_prep.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_convtrans_prep.f90 ; \
        fi
rm -f module_stoch.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_stoch.F  > module_stoch.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_stoch.bb | /lib/cpp -C -P > module_stoch.f90
rm -f module_stoch.b module_stoch.bb
if fgrep -iq '!$OMP' module_stoch.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_stoch.F WITH OMP ; fi ; \
	  mpif77 -o module_stoch.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_stoch.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_stoch.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_stoch.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_stoch.f90 ; \
        fi
rm -f module_sfs_nba.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sfs_nba.F  > module_sfs_nba.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sfs_nba.bb | /lib/cpp -C -P > module_sfs_nba.f90
rm -f module_sfs_nba.b module_sfs_nba.bb
if fgrep -iq '!$OMP' module_sfs_nba.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sfs_nba.F WITH OMP ; fi ; \
	  mpif77 -o module_sfs_nba.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sfs_nba.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sfs_nba.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sfs_nba.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sfs_nba.f90 ; \
        fi
rm -f module_avgflx_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_avgflx_em.F  > module_avgflx_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_avgflx_em.bb | /lib/cpp -C -P > module_avgflx_em.f90
rm -f module_avgflx_em.b module_avgflx_em.bb
if fgrep -iq '!$OMP' module_avgflx_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_avgflx_em.F WITH OMP ; fi ; \
	  mpif77 -o module_avgflx_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_avgflx_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_avgflx_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_avgflx_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_avgflx_em.f90 ; \
        fi
rm -f init_modules_em.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe init_modules_em.F > init_modules_em.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   init_modules_em.b  > init_modules_em.f90
rm -f init_modules_em.b
if fgrep -iq '!$OMP' init_modules_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING init_modules_em.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   init_modules_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING init_modules_em.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  init_modules_em.f90 ; \
        fi
rm -f start_em.o
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe start_em.F > start_em.b 
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   start_em.b  > start_em.f90
rm -f start_em.b
if fgrep -iq '!$OMP' start_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING start_em.F WITH OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   start_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING start_em.F WITHOUT OMP ; fi ; \
	  mpif77 -c  -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include  start_em.f90 ; \
        fi
rm -f shift_domain_em.o
rm -f couple_or_uncouple_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   shift_domain_em.F  > shift_domain_em.bb
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   couple_or_uncouple_em.F  > couple_or_uncouple_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe shift_domain_em.bb | /lib/cpp -C -P > shift_domain_em.f90
rm -f shift_domain_em.b shift_domain_em.bb
if fgrep -iq '!$OMP' shift_domain_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING shift_domain_em.F WITH OMP ; fi ; \
	  mpif77 -o shift_domain_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   shift_domain_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING shift_domain_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o shift_domain_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   shift_domain_em.f90 ; \
        fi
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe couple_or_uncouple_em.bb | /lib/cpp -C -P > couple_or_uncouple_em.f90
rm -f couple_or_uncouple_em.b couple_or_uncouple_em.bb
if fgrep -iq '!$OMP' couple_or_uncouple_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING couple_or_uncouple_em.F WITH OMP ; fi ; \
	  mpif77 -o couple_or_uncouple_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   couple_or_uncouple_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING couple_or_uncouple_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o couple_or_uncouple_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   couple_or_uncouple_em.f90 ; \
        fi
rm -f nest_init_utils.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   nest_init_utils.F  > nest_init_utils.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe nest_init_utils.bb | /lib/cpp -C -P > nest_init_utils.f90
rm -f nest_init_utils.b nest_init_utils.bb
if fgrep -iq '!$OMP' nest_init_utils.f90 ; then \
          if [ -n "" ] ; then echo COMPILING nest_init_utils.F WITH OMP ; fi ; \
	  mpif77 -o nest_init_utils.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   nest_init_utils.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING nest_init_utils.F WITHOUT OMP ; fi ; \
	  mpif77 -o nest_init_utils.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   nest_init_utils.f90 ; \
        fi
rm -f adapt_timestep_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   adapt_timestep_em.F  > adapt_timestep_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe adapt_timestep_em.bb | /lib/cpp -C -P > adapt_timestep_em.f90
rm -f adapt_timestep_em.b adapt_timestep_em.bb
if fgrep -iq '!$OMP' adapt_timestep_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING adapt_timestep_em.F WITH OMP ; fi ; \
	  mpif77 -o adapt_timestep_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   adapt_timestep_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING adapt_timestep_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o adapt_timestep_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   adapt_timestep_em.f90 ; \
        fi
rm -f interp_domain_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   interp_domain_em.F  > interp_domain_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe interp_domain_em.bb | /lib/cpp -C -P > interp_domain_em.f90
rm -f interp_domain_em.b interp_domain_em.bb
if fgrep -iq '!$OMP' interp_domain_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING interp_domain_em.F WITH OMP ; fi ; \
	  mpif77 -o interp_domain_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   interp_domain_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING interp_domain_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o interp_domain_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   interp_domain_em.f90 ; \
        fi
rm -f module_diffusion_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_diffusion_em.F  > module_diffusion_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_diffusion_em.bb | /lib/cpp -C -P > module_diffusion_em.f90
rm -f module_diffusion_em.b module_diffusion_em.bb
if fgrep -iq '!$OMP' module_diffusion_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_diffusion_em.F WITH OMP ; fi ; \
	  mpif77 -o module_diffusion_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_diffusion_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_diffusion_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_diffusion_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_diffusion_em.f90 ; \
        fi
rm -f module_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_em.F  > module_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_em.bb | /lib/cpp -C -P > module_em.f90
rm -f module_em.b module_em.bb
if fgrep -iq '!$OMP' module_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_em.F WITH OMP ; fi ; \
	  mpif77 -o module_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_em.f90 ; \
        fi
rm -f module_sfs_driver.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_sfs_driver.F  > module_sfs_driver.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_sfs_driver.bb | /lib/cpp -C -P > module_sfs_driver.f90
rm -f module_sfs_driver.b module_sfs_driver.bb
if fgrep -iq '!$OMP' module_sfs_driver.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_sfs_driver.F WITH OMP ; fi ; \
	  mpif77 -o module_sfs_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sfs_driver.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_sfs_driver.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_sfs_driver.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_sfs_driver.f90 ; \
        fi
rm -f module_first_rk_step_part1.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_first_rk_step_part1.F  > module_first_rk_step_part1.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_first_rk_step_part1.bb | /lib/cpp -C -P > module_first_rk_step_part1.f90
rm -f module_first_rk_step_part1.b module_first_rk_step_part1.bb
if fgrep -iq '!$OMP' module_first_rk_step_part1.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_first_rk_step_part1.F WITH OMP ; fi ; \
	  mpif77 -o module_first_rk_step_part1.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_first_rk_step_part1.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_first_rk_step_part1.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_first_rk_step_part1.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_first_rk_step_part1.f90 ; \
        fi
rm -f module_first_rk_step_part2.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   module_first_rk_step_part2.F  > module_first_rk_step_part2.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe module_first_rk_step_part2.bb | /lib/cpp -C -P > module_first_rk_step_part2.f90
rm -f module_first_rk_step_part2.b module_first_rk_step_part2.bb
if fgrep -iq '!$OMP' module_first_rk_step_part2.f90 ; then \
          if [ -n "" ] ; then echo COMPILING module_first_rk_step_part2.F WITH OMP ; fi ; \
	  mpif77 -o module_first_rk_step_part2.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_first_rk_step_part2.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING module_first_rk_step_part2.F WITHOUT OMP ; fi ; \
	  mpif77 -o module_first_rk_step_part2.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   module_first_rk_step_part2.f90 ; \
        fi
rm -f solve_em.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   solve_em.F  > solve_em.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe solve_em.bb | /lib/cpp -C -P > solve_em.f90
rm -f solve_em.b solve_em.bb
if fgrep -iq '!$OMP' solve_em.f90 ; then \
          if [ -n "" ] ; then echo COMPILING solve_em.F WITH OMP ; fi ; \
	  mpif77 -o solve_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   solve_em.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING solve_em.F WITHOUT OMP ; fi ; \
	  mpif77 -o solve_em.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   solve_em.f90 ; \
        fi
ar ru ../main/libwrflib.a module_advect_em.o module_diffusion_em.o module_small_step_em.o module_big_step_utilities_em.o module_em.o module_solvedebug_em.o module_bc_em.o module_init_utilities.o module_damping_em.o module_polarfft.o module_force_scm.o module_first_rk_step_part1.o module_first_rk_step_part2.o module_avgflx_em.o module_sfs_nba.o module_convtrans_prep.o module_sfs_driver.o module_stoch.o  init_modules_em.o solve_em.o start_em.o shift_domain_em.o couple_or_uncouple_em.o nest_init_utils.o adapt_timestep_em.o interp_domain_em.o
make[2]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/dyn_em'
make[1]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3'
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" nmm_core ; fi
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" exp_core ; fi
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" SOLVER=em em_wrf )
make[1]: Entering directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main'
rm -f ../main/module_wrf_top.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   ../main/module_wrf_top.F  > ../main/module_wrf_top.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe ../main/module_wrf_top.bb | /lib/cpp -C -P > ../main/module_wrf_top.f90
rm -f ../main/module_wrf_top.b ../main/module_wrf_top.bb
if fgrep -iq '!$OMP' ../main/module_wrf_top.f90 ; then \
          if [ -n "" ] ; then echo COMPILING ../main/module_wrf_top.F WITH OMP ; fi ; \
	  mpif77 -o ../main/module_wrf_top.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   ../main/module_wrf_top.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING ../main/module_wrf_top.F WITHOUT OMP ; fi ; \
	  mpif77 -o ../main/module_wrf_top.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   ../main/module_wrf_top.f90 ; \
        fi
rm -f wrf.o
/lib/cpp -C -P -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR -DUSE_MPI_IN_PLACE  -DDM_PARALLEL -DNETCDF -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DLIMIT_ARGS -DCONFIG_BUF_LEN=32768 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional   wrf.F  > wrf.bb
/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/tools/standard.exe wrf.bb | /lib/cpp -C -P > wrf.f90
rm -f wrf.b wrf.bb
if fgrep -iq '!$OMP' wrf.f90 ; then \
          if [ -n "" ] ; then echo COMPILING wrf.F WITH OMP ; fi ; \
	  mpif77 -o wrf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf.f90 ; \
        else \
          if [ -n "" ] ; then echo COMPILING wrf.F WITHOUT OMP ; fi ; \
	  mpif77 -o wrf.o -c -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include   wrf.f90 ; \
        fi
ranlib libwrflib.a
mpif77 -o wrf.exe  -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    wrf.o ../main/module_wrf_top.o libwrflib.a /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib1/libio_grib1.a /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_grib_share/libio_grib_share.a /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int/libwrfio_int.a -L/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90 -lesmf_time /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/RSL_LITE/librsl_lite.a /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame/module_internal_header_util.o /home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame/pack_utils.o  -L/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -lwrfio_nf -L/home/shankha/work/packages/netcdf/install/lib -lnetcdff -lnetcdf -Wl,-R/home/shankha/work/packages/netcdf/install/lib -lmpi_f77 -L/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/lib -Wl,-R/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/lib 
make[1]: Leaving directory `/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main'
( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
	  ( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/esmf_time_f90  -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/main -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_netcdf -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/external/io_int -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/frame -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/share -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/phys -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/chem -I/home/shankha/work/I_O_Traces/trace_apps/wrf/model/WRFV3/inc -I/home/shankha/work/packages/netcdf/install/include -I/home/shankha/work/OpenMPI/gcc-4.4/gfortran/install/include" SOLVER=em em_wrf_SST_ESMF ) ; \
	fi
build started:   Sun Oct 16 09:59:00 EDT 2011
build completed: Sun Oct 16 10:12:36 EDT 2011
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From shankhabanerjee at gmail.com  Tue Oct 18 03:43:22 2011
From: shankhabanerjee at gmail.com (shankha)
Date: Tue, 18 Oct 2011 05:43:22 -0400
Subject: [Wrf-users] wrf fails to run : build with OpenMPI
In-Reply-To: <CAO_L6qFa1j_jxxLH0wzuRn1WpARa3wM7wv=NeP65Vuathi3_SQ@mail.gmail.com>
References: <CAO_L6qFa1j_jxxLH0wzuRn1WpARa3wM7wv=NeP65Vuathi3_SQ@mail.gmail.com>
Message-ID: <CAO_L6qGnDSsOQ4v8D+CL1an=rjRMvt+Jdmcu=AkG1mXeSDjbnA@mail.gmail.com>

Hi,
Please ignore my below mentioned message. After reading the on-line
documentation I figured out a way to run wrf.
I am sorry for not going through the manual carefully.

On Sun, Oct 16, 2011 at 10:41 AM, shankha <shankhabanerjee at gmail.com> wrote:

> Hi,
> Machine Information : Linux bertram 2.6.32-33-generic #72-Ubuntu SMP Fri
> Jul 29 21:07:13 UTC 2011 x86_64 GNU/Linux
> Compiler : 4.4.3.
> MPI : OpenMPI 1.4.3
>
> I am unable to run wrf.exe with mpirun. I am able to run wrf.exe stand
> alone
>
> bertram : ~ ] mpirun -np 2 ./wrf.exe
> --------------------------------------------------------------------------
> mpirun has exited due to process rank 0 with PID 7061 on
> node bertram exiting without calling "finalize". This may
> have caused other processes in the application to be
> terminated by signals sent by mpirun (as reported here).
> --------------------------------------------------------------------------
>
> I have checked my MPI installation and it is good. ldd didn't report any
> missing libraries or errors.
>
> Thanks for your help.
> --
> Thanks
> Shankha
>
>


-- 
Thanks
Shankha Banerjee
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From claudiomet at gmail.com  Fri Oct 21 09:38:27 2011
From: claudiomet at gmail.com (claudiomet)
Date: Fri, 21 Oct 2011 12:38:27 -0300
Subject: [Wrf-users] wrf 3.3.1 and pgi 11.7
Message-ID: <CABWjCh2RL_pNxmVC+iymDp24gPtjq3LGUY8-oOYrv_WuNh1o0Q@mail.gmail.com>

Greetings users !

I'm trying to compile (smpar) WRFV3.3.1 with PGI 11.7 on a Intel x64 machine
NetCDF and WRF compilation OK, no problems, but WPS fails. The
compilation log says in the first lines:

**** Compiling WPS and all utilities ****

make[1]: se ingresa al directorio ?/home/user1/WPS/geogrid/src?
/bin/rm -f cio.o
mpicc -cc=pgcc -D_UNDERSCORE -DBYTESWAP -DLINUX -DIO_NETCDF
-DIO_BINARY -DIO_GRIB1 -D_MPI -DBIT32 -D_GEOGRID -O -c cio.c
pgcc-Error-Unknown switch: -Wall
make[1]: [cio.o] Error 1 (no tiene efecto)

What's the problem ?
Thanks !!

--
Claudio Cortes (Skype: claudiomet78)
claudiomet.blogspot.com
twitter.com/claudiomet
cl.linkedin.com/in/claudiomet

Meteorologo
Jefe del Laboratorio de Innovaci?n e Inform?tica Ambiental (LIIA)
Unidad de Modelacion y Gestion de la Calidad del Aire (UMGCA)
Centro Nacional del Medio Ambiente (CENMA)
www.cenma.cl

--
Claudio Cortes (Skype: claudiomet78)
claudiomet.blogspot.com
twitter.com/claudiomet
cl.linkedin.com/in/claudiomet

Meteorologist
Laboratory of Innovation and Environmental Informatics Chief
Modeling and Air Quality Management Unit
National Enviroment Center, Chile (CENMA)
www.cenma.cl

From ebeigi3 at tigers.lsu.edu  Tue Oct 18 19:31:47 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Tue, 18 Oct 2011 21:31:47 -0400
Subject: [Wrf-users] Error Running metgrid.exe
Message-ID: <CADwy=LKeDmZ2znTkuc6G_2h6m8XBcmmKF8inAuwEqu3GomD1Qg@mail.gmail.com>

Dear Sir/Madam,

Thanks for your previous help. I ran metgrid using ccsm converted format to
intermediate format, and i got this error message. could you please help me
with that?

Oops, something is not right with the Gaussian latitude computation.
The input data gave the starting latitude as   23.113.
This routine computed the starting latitude as +-  84.376.
The difference is larger than 0.01 degrees, which is not expected.
ERROR: Gaussian_latitude_computation
application called MPI_Abort(MPI_COMM_WORLD, 137254296) - process 0


thanks in advance


Best Regards,

-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From michael.bane at manchester.ac.uk  Fri Oct 21 06:25:42 2011
From: michael.bane at manchester.ac.uk (michael bane)
Date: Fri, 21 Oct 2011 13:25:42 +0100
Subject: [Wrf-users] TAU profiler for WRF and WRF-Chem
Message-ID: <B06D80D1-9ED1-4E72-9688-CAE335E13144@manchester.ac.uk>

Hello everybody!

I've just tried to compile up WRF-Chem with the TAU profiler. Whilst many routines compile okay, many others fail, seemingly since PDT (a parser used internally by TAU) cannot parse fully the source code. Before I delve deeply in to the errant routines I was wondering if anybody else had already solved this issue?

I'm building using Intel compilers (v11.0) for OpenMPI (1.4.1), under Scientific Linux 5.2.

Many thanks, M


--
Dr. Michael Bane
Snr Research Apps & Collab Consultant
IT Services for Research
The University of Manchester UK
http://www.manchester.ac.uk/rac
@mkbane_mcr






From moudipascal at yahoo.fr  Fri Oct 21 03:46:29 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Fri, 21 Oct 2011 10:46:29 +0100 (BST)
Subject: [Wrf-users] Segmentation fault
Message-ID: <1319190389.22851.YahooMailClassic@web29005.mail.ird.yahoo.com>

Dear all,
I tried to compile the attached scripts, but i got segmentation fault,
I don't understand why, would someone help me to fix the problem
Regards

Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From remi.montroty at mfi.fr  Fri Oct 21 10:58:59 2011
From: remi.montroty at mfi.fr (Remi Montroty)
Date: Fri, 21 Oct 2011 18:58:59 +0200
Subject: [Wrf-users] Nesting, Intermediate domain & JMAX value
In-Reply-To: <CAGR4S9FA7_EDZM8ogQ9=DOYrQVtLub+B1ZUaJz8i0tUO3NbJ2w@mail.gmail.com>
References: <1315907443.47695.YahooMailNeo@web29015.mail.ird.yahoo.com>
	<CAGR4S9FA7_EDZM8ogQ9=DOYrQVtLub+B1ZUaJz8i0tUO3NbJ2w@mail.gmail.com>
Message-ID: <4EA1A4D3.2030908@mfi.fr>

Dear all,

I have add quite a few surprises trying to nest in version 3.3.0, core nmm.

I am using a main grid of nx=238, nj=302, and a internal grid of nx=355 
& ny=697.
Those last two values seemed to match with the rule of each value 
needing to be equal to 1 + n* 3 (the fixed parent_ratio in nmm core).

Now when I get to the model run itself (wrf, after real_nmm.exe) I get 
the following error (cf First Log). *"NESTED DOMAIN: JMAX IS EVEN, 
INCREASE e_sn IN THE namelist.input BY 1" which seems to match with *

dyn_nmm/NMM_NEST_UTILS1.F 46  <http://12characters.net/wrfbrowser/html_code/dyn_nmm/NMM_NEST_UTILS1.F.html#46>

If I do increase JMAX by 1 (ie 698), it crashes wrf.exe when trying to 
run find_ijstart_level ... (cf Second Log)

Any clue? And what is this intermediate domain in First Log?

Does anyone have an example of a set of functioning namelists for a 
nested run in WRF_v3.3.0?

Thanks !

Remi

*First Log :*

   WRF V3.3 MODEL
   *************************************
   Parent domain
   ids,ide,jds,jde            1         238           1         302
   ims,ime,jms,jme           -4          66         234         307
   ips,ipe,jps,jpe            1          59         241         302
   *************************************
  DYNAMICS OPTION: nmm dyncore
     alloc_space_field: domain            1 ,             121094988  
bytes allocated
    med_initialdata_input: calling input_input
   FORECAST BEGINS  0 GMT  0/ 0/   0
  zeroing grid%cwm
  appear to have grid%q2 values...do not zero
  INIT:  INITIALIZED ARRAYS FOR CLEAN START
      restrt= F  nest= F
      grid%pdtop=   35592.090      grid%pt=   5000.0000
  INPUT LandUse = "USGS"
  Climatological albedo is used instead of table values
SUN-EARTH DISTANCE CALCULATION FINISHED IN SOLARD
YEAR= 2011  MONTH= 10  DAY= 21 HOUR=  0 R1=   0.9957
  INITIALIZE THREE Noah LSM RELATED TABLES
  Initializng moist(:,:,:, Qv) from q
   summing moist(:,:,:,i_m) into cwm array
   summing moist(:,:,:,i_m) into cwm array
   summing moist(:,:,:,i_m) into cwm array
   computing grid%f_ice
   computing f_rain
   *************************************
   Nesting domain
   ids,ide,jds,jde            1         355           1         697
   ims,ime,jms,jme           -4          99         547         702
   ips,ipe,jps,jpe            1          89         557         697
   INTERMEDIATE domain
   ids,ide,jds,jde           68         191          38         275
   ims,ime,jms,jme           63         109         216         280
   ips,ipe,jps,jpe           66          99         226         277
   *************************************
  d01 2011-10-21_00:00:00  alloc_space_field: domain            2 
,             372043584  bytes allocated
  -------------- FATAL CALLED ---------------
  FATAL CALLED FROM FILE: <stdin>  LINE:      54
  NESTED DOMAIN: JMAX IS EVEN, INCREASE e_sn IN THE namelist.input BY 1
  -------------------------------------------

*Second Log :*
wrf.exe:28373 terminated with signal 11 at PC=8a8fc9 SP=7fffe78b7300.  
Backtrace:
wrf.exe(find_ijstart_level_+0x109)[0x8a8fc9]
wrf.exe(nest_terrain_+0x7fb)[0x890fbb]
wrf.exe(med_nest_initial_+0x772)[0x787c72]
wrf.exe(__module_integrate_MOD_integrate+0x196)[0x4abf1e]
wrf.exe(__module_wrf_top_MOD_wrf_run+0x24)[0x480a84]
wrf.exe(MAIN__+0x3c)[0x4802dc]
wrf.exe(main+0x2a)[0x16d2bba]
/lib64/libc.so.6(__libc_start_main+0xf4)[0x3f9201d994]
wrf.exe[0x4801d9]
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From William.Neff at noaa.gov  Fri Oct 21 13:01:38 2011
From: William.Neff at noaa.gov (William Neff)
Date: Fri, 21 Oct 2011 13:01:38 -0600
Subject: [Wrf-users] First Notice ISARS2012,
 16th International Symposium for the Advancement of Boundary Layer
 Remote Sensing, Boulder Colorado, June 5-8, 2012
Message-ID: <4EA1C192.8060001@noaa.gov>

Please see attached flyer for the 16th International Symposium for the
Advancement of Boundary Layer Remote Sensing

-- 
Dr. William Neff
Director, Physical Sciences Division
NOAA/OAR,Earth System Research Laboratory
ATTN: R/PSD
325 Broadway
Boulder Colorado 80305
Alternate email:william.neff.325 at gmail.com
website: http://www.esrl.noaa.gov/psd/
Ph: 303-497-6265
Fx: 303-497-6020

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From haley at ucar.edu  Fri Oct 21 15:19:32 2011
From: haley at ucar.edu (Mary Haley)
Date: Fri, 21 Oct 2011 15:19:32 -0600
Subject: [Wrf-users] [ncl-install] Segmentation fault
In-Reply-To: <1319190389.22851.YahooMailClassic@web29005.mail.ird.yahoo.com>
References: <1319190389.22851.YahooMailClassic@web29005.mail.ird.yahoo.com>
Message-ID: <39287344-64E1-44D3-A3FB-974422D6D751@ucar.edu>

Pascal,

As Dennis stated, this script is too complicated. We can't run it ourselves, so we have no way to tell where it is getting the segmentation faul.

One thing you can to do see if you can figure out where the code is failing is to run ncl with the "-x" option. This will echo every line as it is executed.

For this to work properly, though, you'll need to comment out the "begin" and "end" statements. Otherwise, NCL will echo all the lines in your script, and then execute the program.

--Mary

On Oct 21, 2011, at 3:46 AM, moudi pascal wrote:

> Dear all,
> I tried to compile the attached scripts, but i got segmentation fault,
> I don't understand why, would someone help me to fix the problem
> Regards
> 
> Pascal MOUDI IGRI
> 
> Ph-D Student 
> Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
> Department of Physics
> Faculty of Science
> University of Yaounde I, Cameroon 
> National Advanced Training School for Technical Education,
> Electricity Engineering, Douala
> 
> Tel:+237 75 32 58 52
> <pascal1.ncl>_______________________________________________
> ncl-install mailing list
> List instructions, subscriber options, unsubscribe:
> http://mailman.ucar.edu/mailman/listinfo/ncl-install

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From weilla at latmos.ipsl.fr  Fri Oct 21 14:13:16 2011
From: weilla at latmos.ipsl.fr (weilla at latmos.ipsl.fr)
Date: Fri, 21 Oct 2011 22:13:16 +0200
Subject: [Wrf-users] First Notice ISARS2012,
 16th International Symposium for the Advancement of Boundary Layer
 Remote Sensing, Boulder Colorado, June 5-8, 2012
In-Reply-To: <4EA1C192.8060001@noaa.gov>
References: <4EA1C192.8060001@noaa.gov>
Message-ID: <4944013cb30d27339f52b42022dd1c2d.squirrel@webmail.latmos.ipsl.fr>

>Wonderful Bill
Have a nice day or evening
from the Spitsbergen city of Ny Alesund
Alain
 Please see attached flyer for the 16th International Symposium for the
> Advancement of Boundary Layer Remote Sensing
>
> --
> Dr. William Neff
> Director, Physical Sciences Division
> NOAA/OAR,Earth System Research Laboratory
> ATTN: R/PSD
> 325 Broadway
> Boulder Colorado 80305
> Alternate email:william.neff.325 at gmail.com
> website: http://www.esrl.noaa.gov/psd/
> Ph: 303-497-6265
> Fx: 303-497-6020
>
>



From terrib at ucar.edu  Tue Oct 25 17:09:04 2011
From: terrib at ucar.edu (Terri Betancourt)
Date: Tue, 25 Oct 2011 17:09:04 -0600
Subject: [Wrf-users] Thomas T. Warner Memorial Symposium
Message-ID: <8E2777F4-0BCC-4650-91D6-2AF9A71D80D5@ucar.edu>

Family, friends and colleagues are invited to the National Center for Atmospheric Research on December 2, 2012 for the Thomas T. Warner Memorial Symposium.  The purpose of the Symposium is to pay tribute to the scientific career and to celebrate the rich life of Dr. Warner. The symposium will consist of invited oral presentations focused on topics related to the areas of atmospheric modeling that represent Dr. Warner's career, including desert meteorology, numerical weather and climate prediction, quality assurance in the atmospheric modeling process, and Tom?s extraordinary role as a mentor in the lives of his colleagues.
Details on the Symposium are available at the following website:

http://ral.ucar.edu/general/events/warner_symposium/

Contributions may be made to the Warner Visitor Scholarship to fund student visitor and outreach collaborations between PSU, CU, and NCAR.  Details on the scholarship fund will be posted at the above web site and available at the Symposium.

Hosted by NCAR?s Research Applications Laboratory, Penn State Department of Meteorology and University of Colorado Atmospheric and Oceanic Sciences.  


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From caklich at gmail.com  Sun Oct 30 13:30:56 2011
From: caklich at gmail.com (Chris Klich)
Date: Sun, 30 Oct 2011 15:30:56 -0400
Subject: [Wrf-users] Help with Obs Nudging Crash
Message-ID: <CABnjn+tcBmHXj2kbNY6XUd7y3Y_S3niYXWpcOVxubm8tOopi0g@mail.gmail.com>

Hi all, I have recently been trying to use obs-nudging with my WRF run.  I
am currently running WRF-Chem version 3.2.1 due to a long-term project and
unable to upgrade to 3.3.

I currently have both upper air and surface data in little-r format
(separate however).  I convert these files into the proper naming format
for OBSGRID, run obsgrid and move the files to the /run directory,
concatenate all the OBS_DOMAIN files into OBS_DOMAIN101, and then run
real.exe and wrf.exe.  However, when OBSGRID runs, the output files are
every 3 hours, while my met_em files and observation files are every 6.
These 3 hour intermediate times (3, 9, 15, 21) are empty when the
OBS_DOMAIN and plotobs and qc files are outputted, while the normal
intervals of 0, 6, 12, 18 are several megabytes.  Even in this case, I had
tried concatenating all files to OBS_DOMAIN101 and running WRF.  However,
it seems the entire run finishes only when I use just upper air data
specifically.  When I run using just surface obs or concatenating surface
to upper air, the run crashes, and it seems at a very random time.  When
using just surface it crashed after about 12:49 into the run, while running
with the concatenated upper air/surface, it crashed after about 3 days,
12:49.  I can't seem to figure out what is causing this.  The end of my
rsl.error.0000 file looks like:

Timing for main (dt=135.00): time 2008-05-20_12:45:13 on domain   1:
1.08750 elapsed seconds.
Timing for main (dt=135.00): time 2008-05-20_12:47:28 on domain   1:
1.05240 elapsed seconds.
 OBS NUDGING: Reading new obs for time window TBACK =   12.125 TFORWD =
13.458
  for grid =  1
 OBS NUDGING:     1 previously read obs are now too old for the current
window a
 nd have been removed.
 ****** CALL IN4DOB AT KTAU =   326 AND XTIME =     767.48:  NSTA =      43
****
 **
 ++++++CALL ERROB AT KTAU =   326 AND INEST =  1:  NSTA =    43 ++++++
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  3  3
rindx= 5.
 3
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  4  4
rindx= 5.
 3
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  1  1
rindx= 5.
 3
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  2  2
rindx= 5.
 3
Timing for main (dt=135.00): time 2008-05-20_12:49:43 on domain   1:
1.07960 elapsed seconds.
forrtl: error (78): process killed (SIGTERM)
Image              PC                Routine            Line
Source
libc.so.6          00000033C34DD1E3  Unknown               Unknown  Unknown
libopen-pal.so.0   00002B47160653DD  Unknown               Unknown  Unknown
libopen-pal.so.0   00002B471606213D  Unknown               Unknown  Unknown
libopen-pal.so.0   00002B471605555C  Unknown               Unknown  Unknown
libmpi.so.0        00002B4715B43AA8  Unknown               Unknown  Unknown
libmpi.so.0        00002B4715B721AC  Unknown               Unknown  Unknown
wrf.exe            0000000001C64282  Unknown               Unknown  Unknown
wrf.exe            0000000000F373F4  Unknown               Unknown  Unknown
wrf.exe            00000000014F73B5  Unknown               Unknown  Unknown
wrf.exe            0000000000E8EC4F  Unknown               Unknown  Unknown
wrf.exe            0000000000D8DB6D  Unknown               Unknown  Unknown
wrf.exe            000000000052ECDF  Unknown               Unknown  Unknown
wrf.exe            00000000004BC733  Unknown               Unknown  Unknown
wrf.exe            00000000004BC6E7  Unknown               Unknown  Unknown
wrf.exe            00000000004BC67C  Unknown               Unknown  Unknown
libc.so.6          00000033C341EC9D  Unknown               Unknown  Unknown
wrf.exe            00000000004BC579  Unknown               Unknown  Unknown



In addition, when I use upper air data, I get thousands and thousands of
lines in my rsl.error.0000 file that read something like:

n=        9061 unknown ob of type FM-88 SATOB

Is this normal or is there an option I am missing where it will read these
correctly?

Any help for either of these problems would be greatly appreciated as I
need to figure this out ASAP.

I've also attached both namelist.input and namelist.oa for any help that
may provide.

Thank you.

-- 
Christopher Klich
Graduate Student
Florida State University
(908) 208-9743
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From terrib at ucar.edu  Tue Oct 25 20:21:17 2011
From: terrib at ucar.edu (Terri Betancourt)
Date: Tue, 25 Oct 2011 20:21:17 -0600
Subject: [Wrf-users] Fwd: Thomas T. Warner Memorial Symposium
References: <8E2777F4-0BCC-4650-91D6-2AF9A71D80D5@ucar.edu>
Message-ID: <6F5E6E5E-EF2A-4166-B043-BF8735D7811C@ucar.edu>

Dear Moderator,

If possible I'd like to make a correction to the announcement below before it goes out.  The year of the symposium should be 2011, not 2012.  What would be the best method to make this correction?  Submit a new, corrected announcement, or ask you, as the moderator, to make the modification?

Many thanks in advance for your assistance!
- Terri b.

Begin forwarded message:

> From: Terri Betancourt <terrib at ucar.edu>
> Date: October 25, 2011 5:09:04 PM MDT
> To: wrf-users at ucar.edu
> Subject: Thomas T. Warner Memorial Symposium
> 
> Family, friends and colleagues are invited to the National Center for Atmospheric Research on December 2, 2012 for the Thomas T. Warner Memorial Symposium.  The purpose of the Symposium is to pay tribute to the scientific career and to celebrate the rich life of Dr. Warner. The symposium will consist of invited oral presentations focused on topics related to the areas of atmospheric modeling that represent Dr. Warner's career, including desert meteorology, numerical weather and climate prediction, quality assurance in the atmospheric modeling process, and Tom?s extraordinary role as a mentor in the lives of his colleagues.
> Details on the Symposium are available at the following website:
> 
> http://ral.ucar.edu/general/events/warner_symposium/
> 
> Contributions may be made to the Warner Visitor Scholarship to fund student visitor and outreach collaborations between PSU, CU, and NCAR.  Details on the scholarship fund will be posted at the above web site and available at the Symposium.
> 
> Hosted by NCAR?s Research Applications Laboratory, Penn State Department of Meteorology and University of Colorado Atmospheric and Oceanic Sciences.  
> 
> 

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From bbrashers at Environcorp.com  Mon Oct 31 11:59:11 2011
From: bbrashers at Environcorp.com (Bart Brashers)
Date: Mon, 31 Oct 2011 10:59:11 -0700
Subject: [Wrf-users] Help with Obs Nudging Crash
In-Reply-To: <CABnjn+tcBmHXj2kbNY6XUd7y3Y_S3niYXWpcOVxubm8tOopi0g@mail.gmail.com>
References: <CABnjn+tcBmHXj2kbNY6XUd7y3Y_S3niYXWpcOVxubm8tOopi0g@mail.gmail.com>
Message-ID: <1B8D1B9BF4DCDC4A90A42E312FF308520776C23E@irvine01.irvine.environ.local>

Sounds like you have 2 issues:

 

1. OBSGRID.EXE is not writing output at the times you want

2. WRF-Chem is bombing when nudging

 

I posted a bit on problem 1 - I was misinterpreting the DOCs (or the
DOCs are misleading, depending on your viewpoint).  See
http://mailman.ucar.edu/pipermail/wrf-users/2011/002424.html.  

 

Basically, set &share::interval_seconds to match your  input GRIB data
interval (must match the interval you ran METGRID.EXE with).  This is
21600 if your GRIB files come every 6 hours. 

 

Then make sure your little_r format files contain data every
&record7::intf4d (from your email, it looks sorta like you want to nudge
every 3 hours).  The main point is that OBSGRID.EXE will look for a new
file every intf4d seconds, and will not look in a file that's already
been opened (from a previous interval).

 

I'm nearly certain that you must combine both your surface and upper-air
data into the same file, but that's pretty easy - you can just "cat"
them together.  

 

I suggest you fix problem 1 first, so you have non-empty OBS_DOMAIN1??
files for the in-between hours, before addressing the bombing of WRF.

 

Bart Brashers

 

 

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Chris Klich
Sent: Sunday, October 30, 2011 12:31 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] Help with Obs Nudging Crash

 

Hi all, I have recently been trying to use obs-nudging with my WRF run.
I am currently running WRF-Chem version 3.2.1 due to a long-term project
and unable to upgrade to 3.3.

I currently have both upper air and surface data in little-r format
(separate however).  I convert these files into the proper naming format
for OBSGRID, run obsgrid and move the files to the /run directory,
concatenate all the OBS_DOMAIN files into OBS_DOMAIN101, and then run
real.exe and wrf.exe.  However, when OBSGRID runs, the output files are
every 3 hours, while my met_em files and observation files are every 6.
These 3 hour intermediate times (3, 9, 15, 21) are empty when the
OBS_DOMAIN and plotobs and qc files are outputted, while the normal
intervals of 0, 6, 12, 18 are several megabytes.  Even in this case, I
had tried concatenating all files to OBS_DOMAIN101 and running WRF.
However, it seems the entire run finishes only when I use just upper air
data specifically.  When I run using just surface obs or concatenating
surface to upper air, the run crashes, and it seems at a very random
time.  When using just surface it crashed after about 12:49 into the
run, while running with the concatenated upper air/surface, it crashed
after about 3 days, 12:49.  I can't seem to figure out what is causing
this.  The end of my rsl.error.0000 file looks like:

Timing for main (dt=135.00): time 2008-05-20_12:45:13 on domain   1:
1.08750 elapsed seconds.
Timing for main (dt=135.00): time 2008-05-20_12:47:28 on domain   1:
1.05240 elapsed seconds.
 OBS NUDGING: Reading new obs for time window TBACK =   12.125 TFORWD =
13.458
  for grid =  1
 OBS NUDGING:     1 previously read obs are now too old for the current
window a
 nd have been removed.
 ****** CALL IN4DOB AT KTAU =   326 AND XTIME =     767.48:  NSTA =
43 ****
 **
 ++++++CALL ERROB AT KTAU =   326 AND INEST =  1:  NSTA =    43 ++++++
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  3  3
rindx= 5.
 3
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  4  4
rindx= 5.
 3
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  1  1
rindx= 5.
 3
  OBS NUDGING FOR IN,J,KTAU,XTIME,IVAR,IPL:  1 10   326   767.48  2  2
rindx= 5.
 3
Timing for main (dt=135.00): time 2008-05-20_12:49:43 on domain   1:
1.07960 elapsed seconds.
forrtl: error (78): process killed (SIGTERM)
Image              PC                Routine            Line
Source             
libc.so.6          00000033C34DD1E3  Unknown               Unknown
Unknown
libopen-pal.so.0   00002B47160653DD  Unknown               Unknown
Unknown
libopen-pal.so.0   00002B471606213D  Unknown               Unknown
Unknown
libopen-pal.so.0   00002B471605555C  Unknown               Unknown
Unknown
libmpi.so.0        00002B4715B43AA8  Unknown               Unknown
Unknown
libmpi.so.0        00002B4715B721AC  Unknown               Unknown
Unknown
wrf.exe            0000000001C64282  Unknown               Unknown
Unknown
wrf.exe            0000000000F373F4  Unknown               Unknown
Unknown
wrf.exe            00000000014F73B5  Unknown               Unknown
Unknown
wrf.exe            0000000000E8EC4F  Unknown               Unknown
Unknown
wrf.exe            0000000000D8DB6D  Unknown               Unknown
Unknown
wrf.exe            000000000052ECDF  Unknown               Unknown
Unknown
wrf.exe            00000000004BC733  Unknown               Unknown
Unknown
wrf.exe            00000000004BC6E7  Unknown               Unknown
Unknown
wrf.exe            00000000004BC67C  Unknown               Unknown
Unknown
libc.so.6          00000033C341EC9D  Unknown               Unknown
Unknown
wrf.exe            00000000004BC579  Unknown               Unknown
Unknown



In addition, when I use upper air data, I get thousands and thousands of
lines in my rsl.error.0000 file that read something like:

n=        9061 unknown ob of type FM-88 SATOB

Is this normal or is there an option I am missing where it will read
these correctly?

Any help for either of these problems would be greatly appreciated as I
need to figure this out ASAP.

I've also attached both namelist.input and namelist.oa for any help that
may provide.

Thank you.

-- 
Christopher Klich
Graduate Student
Florida State University
(908) 208-9743



This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From chenming at ucar.edu  Thu Nov  3 16:01:51 2011
From: chenming at ucar.edu (Ming Chen)
Date: Thu, 03 Nov 2011 16:01:51 -0600
Subject: [Wrf-users] Fwd: job posting for project scientist I position
Message-ID: <4EB30F4F.9050206@ucar.edu>



-------- Original Message --------
Subject: 	job posting for project scientist I position
Date: 	Thu, 03 Nov 2011 16:00:06 -0600
From: 	Ming Chen <chenming at ucar.edu>
To: 	wrf-news-request at ucar.edu



Dear WRF Users,

We have activated the requisition to hire a Project Scientist I and
have posted this position on the UCAR Career Opportunities page

http://tinyurl.com/Proj-Sci-I-12025

Application deadline is Wednesday, November 16, 2011.


Hans

Xiang-Yu (Hans) Huang
Phone: 303-497-8975
Email: huangx at ucar.edu



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From stuefer at gi.alaska.edu  Thu Nov  3 17:54:47 2011
From: stuefer at gi.alaska.edu (Martin)
Date: Thu, 03 Nov 2011 15:54:47 -0800
Subject: [Wrf-users] Vacancy: Postdoc Position at the University of Alaska
	Fairbanks
Message-ID: <4EB329C7.7030607@gi.alaska.edu>

Postdoctoral Position  at the Geophysical Institute - University of 
Alaska Fairbanks

A postdoctoral position is available to join a growing research group 
working in the area of Arctic aerosol assessment using a variety of 
modern remote sensing and insitu measurement techniques, and numerical 
modeling methods. The primary responsibility associated with this full 
time funded position is to conduct research to assess temporal and 
spatial variations of anthropogenic water vapor emissions in the Arctic. 
Research tasks will include modeling of the respective microphysics and 
related visibility constraints due to ice fog. Candidates need to have a 
strong background in physics, and extensive IT and programming skills. 
The position is aimed to evaluate and improve the capabilities of the 
Weather Research and Forecast (WRF) model to simulate the microphysics 
of point sources of water vapor in an Arctic environment.

Further details and instructions for applicants can be found at
<www.uakjobs.com/applicants/Central?quickFind=75659 >


If you have questions regarding the position, please contact Dr. Martin 
Stuefer at the Geophysical Institute at University of Alaska Fairbanks, 
(907) 474-6477 or email: stuefer at gi.alaska.edu.
If you have questions about applying online, please contact Farra Smith, 
HR Consultant, Geophysical Institute, University of Alaska Fairbanks, 
(907) 474-5511 or e mail: fsmith32 at alaska.edu.
The University of Alaska Fairbanks is an Equal Opportunity/Affirmative 
Action Employer.

From ebeigi3 at tigers.lsu.edu  Mon Nov  7 21:11:09 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Mon, 7 Nov 2011 23:11:09 -0500
Subject: [Wrf-users] average of wrfout variables
Message-ID: <CADwy=L+Zk-LM_poDsUEZEo+2qXMiyf2VnGr0_EkpOuoHCfj79w@mail.gmail.com>

Dear Sir/Madam,

I need to get daily  and monthly averages of 6 hourly wrf output files ,
which method or which software is better to deal with, thanks in advance

Bests,


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From ebeigi3 at tigers.lsu.edu  Wed Nov  9 21:33:55 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Wed, 9 Nov 2011 23:33:55 -0500
Subject: [Wrf-users] STOP: LON outside domain
Message-ID: <CADwy=LKZtrFm8+SWW7bsOt0q66_OrLXuOfXu5hcz_5=iE1p-jQ@mail.gmail.com>

Dear Sir/Madam,

i am using read_wrf_nc to extract time series of  variables from wrfout
file, but when i use this command :
./read_wrf_nc wrfout_d01_2000-01-25_12\:00\:00 -ts ll 30 -90 T2 RAINC
RAINNC -lev 1

i get this error "STOP: LON outside domain"  ,  i tested that with a range
of lat and lon , but every time i get the same error.could anyone help me
with that please?

Best Regards,

Ehsan Beigi


-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From jpad0001 at um.edu.mt  Wed Nov  9 05:24:53 2011
From: jpad0001 at um.edu.mt (Jason Padovani Ginies)
Date: Wed, 9 Nov 2011 13:24:53 +0100
Subject: [Wrf-users] Optimal schemes for LES
Message-ID: <CAHJ3cyN-uxwohm1SC=0p7Y6CChKFktoehGsUxH6Nsuo785DQOg@mail.gmail.com>

Good afternoon,

I am interested in running LES runs on a small domain in the Mediterranean
and have come across some problems when deciding which physics schemes
would be optimal to use. I am to understand that for the finer domain,
diff_opt should be set to 2, with an accompanying setting for km_opt of 2
or 3 and as a consequence cumulus and pbl should be set to zero. When it
comes to the other parameters such as Microphysics, LSM, surface and
radiation, I am unsure which would be best for such an application as the
difference amongst each seems sometimes minimal. Is there any setting which
is crucial for such an application?

Kind regards,

Jason
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From jdemko.ctr at cnttr.dtra.mil  Thu Nov 10 11:03:07 2011
From: jdemko.ctr at cnttr.dtra.mil (Cory Demko)
Date: Thu, 10 Nov 2011 13:03:07 -0500
Subject: [Wrf-users] average of wrfout variables
In-Reply-To: <CADwy=L+Zk-LM_poDsUEZEo+2qXMiyf2VnGr0_EkpOuoHCfj79w@mail.gmail.com>
References: <CADwy=L+Zk-LM_poDsUEZEo+2qXMiyf2VnGr0_EkpOuoHCfj79w@mail.gmail.com>
Message-ID: <2D71B19457E745CB9462F917ABFCC9F4@cdemko>

Ehsan:

 

If the data set is recent (2006 I believe), then you can download via FTP or
HTTP from NCDC. Look under NAM (WRF-NMM).

 

http://nomads.ncdc.noaa.gov/data.php?name=access#hires_weather_datasets

 

Cory Demko

 

  _____  

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On
Behalf Of Ehsan Beigi
Sent: Monday, November 07, 2011 11:11 PM
To: wrfhelp; wrf-users at ucar.edu
Subject: [Wrf-users] average of wrfout variables

 

Dear Sir/Madam,

I need to get daily  and monthly averages of 6 hourly wrf output files ,
which method or which software is better to deal with, thanks in advance

Bests,


-- 
Ehsan Beigi
PhD Student
Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803



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From jpad0001 at um.edu.mt  Thu Nov 10 12:08:19 2011
From: jpad0001 at um.edu.mt (Jason Padovani Ginies)
Date: Thu, 10 Nov 2011 20:08:19 +0100
Subject: [Wrf-users] ARWpost for GrADS application
Message-ID: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>

Dear wrf-users,

I am having trouble compiling ARWposts. When I try to compile I get lots of
error messages looking like this:
*
input_module.f:(.text+0x40f): undefined reference to `ncvgt_'*

and eventually are confronted with a final error message saying:

*make: [ARWpost.exe] Error 1 (ignored)

*Some research has led me to believe that the netCDF on the system might
causing this problem and that I might have to re-compile that
Is there any way to go around this perhaps another method of converting wrf
output in a format readable by GrADS?

Kind regards,

Jason Padovani Ginies
Final Year B.Sc. student
Department of Physics
University of Malta
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From giselezepka at bol.com.br  Fri Nov 11 07:18:41 2011
From: giselezepka at bol.com.br (Gisele dos Santos Zepka)
Date: Fri, 11 Nov 2011 12:18:41 -0200
Subject: [Wrf-users] ungrib.exe error
Message-ID: <4EBD2EC1.5060109@bol.com.br>

Hello all,

I want to run a 25 hours simulation in wrf 3.3.1. I am getting an error 
in ungrib.exe.

I set in namelist.input the following:

...
start_hour = 0
start_year = 2009
start_month = 12
start_day = 3
...
end_hour = 0
end_year = 2009
end_month = 12
end_day = 4


I add as input data:

gfs_4_2009-12-03_0000_000.grb2
gfs_4_2009-12-03_0000_003.grb2
...
gfs_4_2009-12-03_0000_024.grb2


The error is:

2011-11-11 11:29:58.568 ---  *** StarError_ndate
  GETH_IDTS:  Hour of NDATE =            24
  Screwy NDATE: 2009-12-03_24:00:00

What am I doing wrong?

Thanks very much for any help

Gisele

-- 
____________________________________________

Dra. Gisele dos Santos Zepka Saraiva
Meteorologist - Atmopheric Electricity
National Institute for Space Research - INPE
Av. dos Astronautas, 1758
S?o Jos? dos Campos, SP
Brazil, 12227-010

Phone:++55(12) 3208-6841


From jeremy.young868 at topper.wku.edu  Thu Nov 10 16:42:01 2011
From: jeremy.young868 at topper.wku.edu (Young, Jeremy, K)
Date: Thu, 10 Nov 2011 23:42:01 +0000
Subject: [Wrf-users] ARWpost for GrADS application
In-Reply-To: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>
References: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>
Message-ID: <50C0D80B700AFB4597C07F946592F09727C906A0@SN2PRD0302MB123.namprd03.prod.outlook.com>

Hi Jason,

I've seen a similar error message before when attempting to compile ARWpost.  I fixed this problem by adding the following to the configure.arwp file:

--LDFLAGS should now have -L/path/to/netcdf/lib   -lnetcdf -lnetcdff
--CPPFLAGS should now have -I/path/to/netcdf/include  and -R/path/to/netcdf/lib
--Change the "-O" flags to match that of netcdf during compile, probably "-O2".

Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix your problem.  The-R/path/to/netcdf/lib will eliminate another problem that I ran into when trying to run ARWpost.exe in which an error message saying that there was an "error opening shared libraries ...".  If you see this message, you can use a command like " ln -s /path/to/netcdf/lib/libnetcdf* ." issued from the ARWpost directory to link the necessary libraries and allow them to be referenced.

I hope this helps.

Jeremy Young
System Administrator
Climate Research Lab
Western Kentucky University

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jason Padovani Ginies
Sent: Thursday, November 10, 2011 1:08 PM
To: wrf-users at ucar.edu
Subject: [Wrf-users] ARWpost for GrADS application

Dear wrf-users,

I am having trouble compiling ARWposts. When I try to compile I get lots of error messages looking like this:

input_module.f:(.text+0x40f): undefined reference to `ncvgt_'

and eventually are confronted with a final error message saying:

make: [ARWpost.exe] Error 1 (ignored)

Some research has led me to believe that the netCDF on the system might causing this problem and that I might have to re-compile that
Is there any way to go around this perhaps another method of converting wrf output in a format readable by GrADS?

Kind regards,

Jason Padovani Ginies
Final Year B.Sc. student
Department of Physics
University of Malta

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From bernardo at fisica.edu.uy  Sat Nov 12 16:31:31 2011
From: bernardo at fisica.edu.uy (Bernardo de los Santos)
Date: Sat, 12 Nov 2011 21:31:31 -0200
Subject: [Wrf-users] Wrf-users Digest, Vol 87, Issue 5
In-Reply-To: <mailman.3.1321124403.27408.wrf-users@ucar.edu>
References: <mailman.3.1321124403.27408.wrf-users@ucar.edu>
Message-ID: <CAFQ3Dn4OpiX=a6WZdC9YS_YkgJmODcjLsF1J1pPZkDJ9oc5MTQ@mail.gmail.com>

Hola Gisele,
para obtener 25 horas (sino entend? mal), end_hour deber?a ser al
menos 03... del d?a siguiente (namelist) en lugar de 0

Saludos.

2011/11/12  <wrf-users-request at ucar.edu>:
> Send Wrf-users mailing list submissions to
> ? ? ? ?wrf-users at ucar.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
> ? ? ? ?http://mailman.ucar.edu/mailman/listinfo/wrf-users
> or, via email, send a message with subject or body 'help' to
> ? ? ? ?wrf-users-request at ucar.edu
>
> You can reach the person managing the list at
> ? ? ? ?wrf-users-owner at ucar.edu
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Wrf-users digest..."
>
>
> Today's Topics:
>
> ? 1. ungrib.exe error (Gisele dos Santos Zepka)
> ? 2. Re: ARWpost for GrADS application (Young, Jeremy, K)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 11 Nov 2011 12:18:41 -0200
> From: Gisele dos Santos Zepka <giselezepka at bol.com.br>
> Subject: [Wrf-users] ungrib.exe error
> To: wrf-users at ucar.edu
> Message-ID: <4EBD2EC1.5060109 at bol.com.br>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> Hello all,
>
> I want to run a 25 hours simulation in wrf 3.3.1. I am getting an error
> in ungrib.exe.
>
> I set in namelist.input the following:
>
> ...
> start_hour = 0
> start_year = 2009
> start_month = 12
> start_day = 3
> ...
> end_hour = 0
> end_year = 2009
> end_month = 12
> end_day = 4
>
>
> I add as input data:
>
> gfs_4_2009-12-03_0000_000.grb2
> gfs_4_2009-12-03_0000_003.grb2
> ...
> gfs_4_2009-12-03_0000_024.grb2
>
>
> The error is:
>
> 2011-11-11?11:29:58.568 --- ?*** StarError_ndate
> ?GETH_IDTS: ?Hour of NDATE = ? ? ? ? ? ?24
> ?Screwy NDATE: 2009-12-03_24:00:00
>
> What am I doing wrong?
>
> Thanks very much for any help
>
> Gisele
>
> --
> ____________________________________________
>
> Dra. Gisele dos Santos Zepka Saraiva
> Meteorologist - Atmopheric Electricity
> National Institute for Space Research - INPE
> Av. dos Astronautas, 1758
> S?o Jos? dos Campos, SP
> Brazil, 12227-010
>
> Phone:++55(12) 3208-6841
>
>
>
> ------------------------------
>
> Message: 2
> Date: Thu, 10 Nov 2011 23:42:01 +0000
> From: "Young, Jeremy, K" <jeremy.young868 at topper.wku.edu>
> Subject: Re: [Wrf-users] ARWpost for GrADS application
> To: "wrf-users at ucar.edu" <wrf-users at ucar.edu>
> Message-ID:
> ? ? ? ?<50C0D80B700AFB4597C07F946592F09727C906A0 at SN2PRD0302MB123.namprd03.prod.outlook.com>
>
> Content-Type: text/plain; charset="us-ascii"
>
> Hi Jason,
>
> I've seen a similar error message before when attempting to compile ARWpost. ?I fixed this problem by adding the following to the configure.arwp file:
>
> --LDFLAGS should now have -L/path/to/netcdf/lib ? -lnetcdf -lnetcdff
> --CPPFLAGS should now have -I/path/to/netcdf/include ?and -R/path/to/netcdf/lib
> --Change the "-O" flags to match that of netcdf during compile, probably "-O2".
>
> Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix your problem. ?The-R/path/to/netcdf/lib will eliminate another problem that I ran into when trying to run ARWpost.exe in which an error message saying that there was an "error opening shared libraries ...". ?If you see this message, you can use a command like " ln -s /path/to/netcdf/lib/libnetcdf* ." issued from the ARWpost directory to link the necessary libraries and allow them to be referenced.
>
> I hope this helps.
>
> Jeremy Young
> System Administrator
> Climate Research Lab
> Western Kentucky University
>
> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of Jason Padovani Ginies
> Sent: Thursday, November 10, 2011 1:08 PM
> To: wrf-users at ucar.edu
> Subject: [Wrf-users] ARWpost for GrADS application
>
> Dear wrf-users,
>
> I am having trouble compiling ARWposts. When I try to compile I get lots of error messages looking like this:
>
> input_module.f:(.text+0x40f): undefined reference to `ncvgt_'
>
> and eventually are confronted with a final error message saying:
>
> make: [ARWpost.exe] Error 1 (ignored)
>
> Some research has led me to believe that the netCDF on the system might causing this problem and that I might have to re-compile that
> Is there any way to go around this perhaps another method of converting wrf output in a format readable by GrADS?
>
> Kind regards,
>
> Jason Padovani Ginies
> Final Year B.Sc. student
> Department of Physics
> University of Malta
>
> -------------- next part --------------
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> URL: http://mailman.ucar.edu/pipermail/wrf-users/attachments/20111110/a5a74aac/attachment-0001.html
>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>
> End of Wrf-users Digest, Vol 87, Issue 5
> ****************************************
>
> !DSPAM:4ebec25135681056916174!
>



-- 
--
Bernardo de los Santos Simonelli
+598 2 3135353 - 098927775
Montevideo, Uruguay

From rcalmeida at terra.com.br  Sun Nov 13 12:30:10 2011
From: rcalmeida at terra.com.br (Ricardo Almeida)
Date: Sun, 13 Nov 2011 17:30:10 -0200
Subject: [Wrf-users] Wrf-users Digest, Vol 87, Issue 6
In-Reply-To: <mailman.3.1321210803.23057.wrf-users@ucar.edu>
References: <mailman.3.1321210803.23057.wrf-users@ucar.edu>
Message-ID: <3CC383C5B8284B74960BCC3A80315432@ricardoPC>

Dear Dr. Gisele,

Try to change your simulation period to 24 hours (instead of 25 hours) , 
since your input data spans only that period of time. That should work.

Good luck.

Ricardo C. de Almeida, D.Sc.
Federal Univesity in Paran? - Brazil
rcalmeida at ufpr.br

----- Original Message ----- 
From: <wrf-users-request at ucar.edu>
To: <wrf-users at ucar.edu>
Sent: Sunday, November 13, 2011 5:00 PM
Subject: Wrf-users Digest, Vol 87, Issue 6


> Send Wrf-users mailing list submissions to
> wrf-users at ucar.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
> or, via email, send a message with subject or body 'help' to
> wrf-users-request at ucar.edu
>
> You can reach the person managing the list at
> wrf-users-owner at ucar.edu
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Wrf-users digest..."
>
>
> Today's Topics:
>
>   1. Re: Wrf-users Digest, Vol 87, Issue 5 (Bernardo de los Santos)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sat, 12 Nov 2011 21:31:31 -0200
> From: Bernardo de los Santos <bernardo at fisica.edu.uy>
> Subject: Re: [Wrf-users] Wrf-users Digest, Vol 87, Issue 5
> To: wrf-users at ucar.edu
> Message-ID:
> <CAFQ3Dn4OpiX=a6WZdC9YS_YkgJmODcjLsF1J1pPZkDJ9oc5MTQ at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> Hola Gisele,
> para obtener 25 horas (sino entend? mal), end_hour deber?a ser al
> menos 03... del d?a siguiente (namelist) en lugar de 0
>
> Saludos.
>
> 2011/11/12  <wrf-users-request at ucar.edu>:
>> Send Wrf-users mailing list submissions to
>> ? ? ? ?wrf-users at ucar.edu
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>> ? ? ? ?http://mailman.ucar.edu/mailman/listinfo/wrf-users
>> or, via email, send a message with subject or body 'help' to
>> ? ? ? ?wrf-users-request at ucar.edu
>>
>> You can reach the person managing the list at
>> ? ? ? ?wrf-users-owner at ucar.edu
>>
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of Wrf-users digest..."
>>
>>
>> Today's Topics:
>>
>> ? 1. ungrib.exe error (Gisele dos Santos Zepka)
>> ? 2. Re: ARWpost for GrADS application (Young, Jeremy, K)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Fri, 11 Nov 2011 12:18:41 -0200
>> From: Gisele dos Santos Zepka <giselezepka at bol.com.br>
>> Subject: [Wrf-users] ungrib.exe error
>> To: wrf-users at ucar.edu
>> Message-ID: <4EBD2EC1.5060109 at bol.com.br>
>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>>
>> Hello all,
>>
>> I want to run a 25 hours simulation in wrf 3.3.1. I am getting an error
>> in ungrib.exe.
>>
>> I set in namelist.input the following:
>>
>> ...
>> start_hour = 0
>> start_year = 2009
>> start_month = 12
>> start_day = 3
>> ...
>> end_hour = 0
>> end_year = 2009
>> end_month = 12
>> end_day = 4
>>
>>
>> I add as input data:
>>
>> gfs_4_2009-12-03_0000_000.grb2
>> gfs_4_2009-12-03_0000_003.grb2
>> ...
>> gfs_4_2009-12-03_0000_024.grb2
>>
>>
>> The error is:
>>
>> 2011-11-11?11:29:58.568 --- ?*** StarError_ndate
>> ?GETH_IDTS: ?Hour of NDATE = ? ? ? ? ? ?24
>> ?Screwy NDATE: 2009-12-03_24:00:00
>>
>> What am I doing wrong?
>>
>> Thanks very much for any help
>>
>> Gisele
>>
>> --
>> ____________________________________________
>>
>> Dra. Gisele dos Santos Zepka Saraiva
>> Meteorologist - Atmopheric Electricity
>> National Institute for Space Research - INPE
>> Av. dos Astronautas, 1758
>> S?o Jos? dos Campos, SP
>> Brazil, 12227-010
>>
>> Phone:++55(12) 3208-6841
>>
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Thu, 10 Nov 2011 23:42:01 +0000
>> From: "Young, Jeremy, K" <jeremy.young868 at topper.wku.edu>
>> Subject: Re: [Wrf-users] ARWpost for GrADS application
>> To: "wrf-users at ucar.edu" <wrf-users at ucar.edu>
>> Message-ID:
>> ? ? ? 
>> ?<50C0D80B700AFB4597C07F946592F09727C906A0 at SN2PRD0302MB123.namprd03.prod.outlook.com>
>>
>> Content-Type: text/plain; charset="us-ascii"
>>
>> Hi Jason,
>>
>> I've seen a similar error message before when attempting to compile 
>> ARWpost. ?I fixed this problem by adding the following to the 
>> configure.arwp file:
>>
>> --LDFLAGS should now have -L/path/to/netcdf/lib ? -lnetcdf -lnetcdff
>> --CPPFLAGS should now have -I/path/to/netcdf/include 
>> ?and -R/path/to/netcdf/lib
>> --Change the "-O" flags to match that of netcdf during compile, probably 
>> "-O2".
>>
>> Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix 
>> your problem. ?The-R/path/to/netcdf/lib will eliminate another problem 
>> that I ran into when trying to run ARWpost.exe in which an error message 
>> saying that there was an "error opening shared libraries ...". ?If you 
>> see this message, you can use a command like " ln -s 
>> /path/to/netcdf/lib/libnetcdf* ." issued from the ARWpost directory to 
>> link the necessary libraries and allow them to be referenced.
>>
>> I hope this helps.
>>
>> Jeremy Young
>> System Administrator
>> Climate Research Lab
>> Western Kentucky University
>>
>> From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On 
>> Behalf Of Jason Padovani Ginies
>> Sent: Thursday, November 10, 2011 1:08 PM
>> To: wrf-users at ucar.edu
>> Subject: [Wrf-users] ARWpost for GrADS application
>>
>> Dear wrf-users,
>>
>> I am having trouble compiling ARWposts. When I try to compile I get lots 
>> of error messages looking like this:
>>
>> input_module.f:(.text+0x40f): undefined reference to `ncvgt_'
>>
>> and eventually are confronted with a final error message saying:
>>
>> make: [ARWpost.exe] Error 1 (ignored)
>>
>> Some research has led me to believe that the netCDF on the system might 
>> causing this problem and that I might have to re-compile that
>> Is there any way to go around this perhaps another method of converting 
>> wrf output in a format readable by GrADS?
>>
>> Kind regards,
>>
>> Jason Padovani Ginies
>> Final Year B.Sc. student
>> Department of Physics
>> University of Malta
>>
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>>
>> ------------------------------
>>
>> _______________________________________________
>> Wrf-users mailing list
>> Wrf-users at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>>
>>
>> End of Wrf-users Digest, Vol 87, Issue 5
>> ****************************************
>>
>> !DSPAM:4ebec25135681056916174!
>>
>
>
>
> -- 
> --
> Bernardo de los Santos Simonelli
> +598 2 3135353 - 098927775
> Montevideo, Uruguay
>
>
> ------------------------------
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
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From apattantyus2008 at my.fit.edu  Sun Nov 13 17:30:30 2011
From: apattantyus2008 at my.fit.edu (Andre Pattantyus)
Date: Sun, 13 Nov 2011 14:30:30 -1000
Subject: [Wrf-users] netcdf to littler
Message-ID: <CAJacSbWNhQ9RXz8h4bKjdArNioTZ07LQgR84T3m1PNzKhSwGiw@mail.gmail.com>

Hi,

I was wondering if anyone had written a code to convert data from netcdf to
littler format to use in 3d-var?

Thanks
Andre

-- 
Andre Pattantyus, Graduate Student Research Assistant
Marine and Environmental Systems, Florida Institute of Technology
150 W. University Blvd, Melbourne, FL 32901

Phone: (321) 674-8330 | Fax: (321) 674-7212 | Email: apattantyus2008 at fit.edu
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From giselezepka at gmail.com  Fri Nov 11 17:23:37 2011
From: giselezepka at gmail.com (Gisele dos Santos Zepka)
Date: Fri, 11 Nov 2011 22:23:37 -0200
Subject: [Wrf-users] ungrib.exe error
In-Reply-To: <CALZketEFokw+ADgQ9LEZX9EP9XnAye1TbUt_6THepKE6_znBYQ@mail.gmail.com>
References: <4EBD2EC1.5060109@bol.com.br>
	<CALZketEFokw+ADgQ9LEZX9EP9XnAye1TbUt_6THepKE6_znBYQ@mail.gmail.com>
Message-ID: <256ADEBD-ED6D-414D-8AD6-0D418BEDD1F2@gmail.com>

Hi Kevin,

In DomainWizard, after I configure the domains, I complete the time specifications in namelist.input and then add the input data to run the geogrid, ungrib and metgrid. The time specifications shown in the previous email are really from the namelist.input. So far so good. I believe the problem is the date and time of the last GFS file, because it is gfs_4_20091203_0000_024.grb2 instead of gfs_4_20091204_0000_000.grb2. There is a disagreement between the simulation end date that I have set in namelist.input and the date of the last GFS file. The ungrib.exe calls for exactly that and not run claiming error.

I have thought just to rename the last GFS file to gfs_4_20091204_0000_000.grb2.

I will appreciate any suggestion.

Gisele


Em 11/11/2011, ?s 20:59, Kevin Matthew Nuss escreveu:

> Hi Gisele,
> 
> You mention that the error comes from ungrib.exe but you give information from namelist.input rather than namelist.wps. Perhaps you changed the wrong namelist file. If not, then you did not give enough information to provide you with help.
> 
> Even if you meant " I set in namelist.wps the following:" the format of the time specifications shown is the format used for namelist.input, not namelist.wps
> 
> Trying to help,
> Kevin Matthew Nuss
> 
> On Fri, Nov 11, 2011 at 7:18 AM, Gisele dos Santos Zepka <giselezepka at bol.com.br> wrote:
> Hello all,
> 
> I want to run a 25 hours simulation in wrf 3.3.1. I am getting an error
> in ungrib.exe.
> 
> I set in namelist.input the following:
> 
> ...
> start_hour = 0
> start_year = 2009
> start_month = 12
> start_day = 3
> ...
> end_hour = 0
> end_year = 2009
> end_month = 12
> end_day = 4
> 
> 
> I add as input data:
> 
> gfs_4_2009-12-03_0000_000.grb2
> gfs_4_2009-12-03_0000_003.grb2
> ...
> gfs_4_2009-12-03_0000_024.grb2
> 
> 
> The error is:
> 
> 2011-11-11 11:29:58.568 ---  *** StarError_ndate
>  GETH_IDTS:  Hour of NDATE =            24
>  Screwy NDATE: 2009-12-03_24:00:00
> 
> What am I doing wrong?
> 
> Thanks very much for any help
> 
> Gisele
> 
> --
> ____________________________________________
> 
> Dra. Gisele dos Santos Zepka Saraiva
> Meteorologist - Atmopheric Electricity
> National Institute for Space Research - INPE
> Av. dos Astronautas, 1758
> S?o Jos? dos Campos, SP
> Brazil, 12227-010
> 
> Phone:++55(12) 3208-6841
> 
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
> 

____________________________________________

Dra. Gisele dos Santos Zepka Saraiva
Meteorologist - Atmopheric Electricity
National Institute for Space Research - INPE
Av. dos Astronautas, 1758
S?o Jos? dos Campos, SP
Brazil, 12227-010

Phone:++55(12) 3208-6841 

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From jeremy.young868 at topper.wku.edu  Sat Nov 12 05:31:47 2011
From: jeremy.young868 at topper.wku.edu (Young, Jeremy, K)
Date: Sat, 12 Nov 2011 12:31:47 +0000
Subject: [Wrf-users] ARWpost for GrADS application
In-Reply-To: <CAHJ3cyMs3KC=JHOQSTtZz0jboDSCv90OtNLtDQzQ0jLizsj6+g@mail.gmail.com>
References: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C906A0@SN2PRD0302MB123.namprd03.prod.outlook.com>
	<CAHJ3cyMs3KC=JHOQSTtZz0jboDSCv90OtNLtDQzQ0jLizsj6+g@mail.gmail.com>
Message-ID: <50C0D80B700AFB4597C07F946592F09727C98C14@CH1PRD0302MB132.namprd03.prod.outlook.com>

Hi Jason,

What exactly is your problem?  Maybe the paths to your wrfout files are incorrect?  I've attached the namelist file.  The only things I had to change in the namelist when running ARWpost.exe were the start date, the end date and the name of my wrfout file.

I hope the namelist helps.  If you run into any additional problems I can try and help.

My ARWpost directory is stored at the same level as my WRFV3 folder.  That is, the path to my wrfout files in the namelist looks like "../WRFV3/run/wrfout....".

Jeremy Young


From: jasonpadovani at gmail.com [mailto:jasonpadovani at gmail.com] On Behalf Of Jason Padovani Ginies
Sent: Friday, November 11, 2011 8:22 PM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Dear Jeremy,

Thank you for your email. In fact the first modification seems like to have solved the problem already and I now have ARWpost.exe. I still cannot make it work however =( I cannot understand what I am doing wrong to get different error messages. Could I kindly ask you to explain the procedure if you have expertise in the matter? I've tried renaming/relocating and changing the input file and adjusting the namelist accordingly but still I can't seem to get it right.

Could you kindly send me a copy of your namelist.ARWpost and specify the following:

  *   location and name of input(WRF output) files relative to ARWpost.exe

Many thanks,

Jason
On Fri, Nov 11, 2011 at 12:42 AM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

I've seen a similar error message before when attempting to compile ARWpost.  I fixed this problem by adding the following to the configure.arwp file:

--LDFLAGS should now have -L/path/to/netcdf/lib   -lnetcdf -lnetcdff
--CPPFLAGS should now have -I/path/to/netcdf/include  and -R/path/to/netcdf/lib
--Change the "-O" flags to match that of netcdf during compile, probably "-O2".

Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix your problem.  The-R/path/to/netcdf/lib will eliminate another problem that I ran into when trying to run ARWpost.exe in which an error message saying that there was an "error opening shared libraries ...".  If you see this message, you can use a command like " ln -s /path/to/netcdf/lib/libnetcdf* ." issued from the ARWpost directory to link the necessary libraries and allow them to be referenced.

I hope this helps.

Jeremy Young
System Administrator
Climate Research Lab
Western Kentucky University

From: wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu> [mailto:wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu>] On Behalf Of Jason Padovani Ginies
Sent: Thursday, November 10, 2011 1:08 PM
To: wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>
Subject: [Wrf-users] ARWpost for GrADS application

Dear wrf-users,

I am having trouble compiling ARWposts. When I try to compile I get lots of error messages looking like this:

input_module.f:(.text+0x40f): undefined reference to `ncvgt_'

and eventually are confronted with a final error message saying:

make: [ARWpost.exe] Error 1 (ignored)

Some research has led me to believe that the netCDF on the system might causing this problem and that I might have to re-compile that
Is there any way to go around this perhaps another method of converting wrf output in a format readable by GrADS?

Kind regards,

Jason Padovani Ginies
Final Year B.Sc. student
Department of Physics
University of Malta

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users

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From jeremy.young868 at topper.wku.edu  Sat Nov 12 05:34:46 2011
From: jeremy.young868 at topper.wku.edu (Young, Jeremy, K)
Date: Sat, 12 Nov 2011 12:34:46 +0000
Subject: [Wrf-users] ARWpost for GrADS application
References: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C906A0@SN2PRD0302MB123.namprd03.prod.outlook.com>
	<CAHJ3cyMs3KC=JHOQSTtZz0jboDSCv90OtNLtDQzQ0jLizsj6+g@mail.gmail.com> 
Message-ID: <50C0D80B700AFB4597C07F946592F09727C98C37@CH1PRD0302MB132.namprd03.prod.outlook.com>

I apologize for not attaching the namelist.ARWpost file.  Here it is.

From: Young, Jeremy, K
Sent: Saturday, November 12, 2011 6:32 AM
To: wrf-users at ucar.edu
Subject: RE: [Wrf-users] ARWpost for GrADS application

Hi Jason,

What exactly is your problem?  Maybe the paths to your wrfout files are incorrect?  I've attached the namelist file.  The only things I had to change in the namelist when running ARWpost.exe were the start date, the end date and the name of my wrfout file.

I hope the namelist helps.  If you run into any additional problems I can try and help.

My ARWpost directory is stored at the same level as my WRFV3 folder.  That is, the path to my wrfout files in the namelist looks like "../WRFV3/run/wrfout....".

Jeremy Young


From: jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com> [mailto:jasonpadovani at gmail.com]<mailto:[mailto:jasonpadovani at gmail.com]> On Behalf Of Jason Padovani Ginies
Sent: Friday, November 11, 2011 8:22 PM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Dear Jeremy,

Thank you for your email. In fact the first modification seems like to have solved the problem already and I now have ARWpost.exe. I still cannot make it work however =( I cannot understand what I am doing wrong to get different error messages. Could I kindly ask you to explain the procedure if you have expertise in the matter? I've tried renaming/relocating and changing the input file and adjusting the namelist accordingly but still I can't seem to get it right.

Could you kindly send me a copy of your namelist.ARWpost and specify the following:

  *   location and name of input(WRF output) files relative to ARWpost.exe

Many thanks,

Jason
On Fri, Nov 11, 2011 at 12:42 AM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

I've seen a similar error message before when attempting to compile ARWpost.  I fixed this problem by adding the following to the configure.arwp file:

--LDFLAGS should now have -L/path/to/netcdf/lib   -lnetcdf -lnetcdff
--CPPFLAGS should now have -I/path/to/netcdf/include  and -R/path/to/netcdf/lib
--Change the "-O" flags to match that of netcdf during compile, probably "-O2".

Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix your problem.  The-R/path/to/netcdf/lib will eliminate another problem that I ran into when trying to run ARWpost.exe in which an error message saying that there was an "error opening shared libraries ...".  If you see this message, you can use a command like " ln -s /path/to/netcdf/lib/libnetcdf* ." issued from the ARWpost directory to link the necessary libraries and allow them to be referenced.

I hope this helps.

Jeremy Young
System Administrator
Climate Research Lab
Western Kentucky University

From: wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu> [mailto:wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu>] On Behalf Of Jason Padovani Ginies
Sent: Thursday, November 10, 2011 1:08 PM
To: wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>
Subject: [Wrf-users] ARWpost for GrADS application

Dear wrf-users,

I am having trouble compiling ARWposts. When I try to compile I get lots of error messages looking like this:

input_module.f:(.text+0x40f): undefined reference to `ncvgt_'

and eventually are confronted with a final error message saying:

make: [ARWpost.exe] Error 1 (ignored)

Some research has led me to believe that the netCDF on the system might causing this problem and that I might have to re-compile that
Is there any way to go around this perhaps another method of converting wrf output in a format readable by GrADS?

Kind regards,

Jason Padovani Ginies
Final Year B.Sc. student
Department of Physics
University of Malta

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users

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From jeremy.young868 at topper.wku.edu  Sun Nov 13 10:33:41 2011
From: jeremy.young868 at topper.wku.edu (Young, Jeremy, K)
Date: Sun, 13 Nov 2011 17:33:41 +0000
Subject: [Wrf-users] ARWpost for GrADS application
In-Reply-To: <CAHJ3cyN_-C7eJp8ncxfjisW6Yje5Pxt8rUFyxNMV9n=j6cRHWw@mail.gmail.com>
References: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C906A0@SN2PRD0302MB123.namprd03.prod.outlook.com>
	<CAHJ3cyMs3KC=JHOQSTtZz0jboDSCv90OtNLtDQzQ0jLizsj6+g@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C98C06@CH1PRD0302MB132.namprd03.prod.outlook.com>
	<CAHJ3cyN_-C7eJp8ncxfjisW6Yje5Pxt8rUFyxNMV9n=j6cRHWw@mail.gmail.com>
Message-ID: <50C0D80B700AFB4597C07F946592F09727C98D4F@CH1PRD0302MB132.namprd03.prod.outlook.com>

Hi Jason,

If I'm understanding your procedure, you have renamed the wrfout files produced by wrf.exe to a different name (your example is t10).  I have not used ARWpost very often, but I'm not sure if ARWpost.exe can understand what it's reading if the wrfout files are renamed.  Looking at the errors you are seeing, I think that this may be your problem.  It's either that the renamed files are not being understood by ARWpost.exe or that there was an error in the compilation of ARWpost.


&datetime

start_date = '1998-09-01_00:00:00',

end_date   = '1998-09-05_00:00:00',

interval_seconds = 10800,

tacc = 0,

debug_level = 0,

/



&io

input_root_name = '../WRFV3/run/wrfout_d01_1998-09-01_00:00:00'

output_root_name = './test'

plot = 'all_list'

fields = 'height,pressure,tk,tc'

mercator_defs = .true.

/

split_output = .true.

frames_per_outfile = 2





plot = 'all'

plot = 'list'

 plot = 'all_list'

! Below is a list of all available diagnostics

fields = 'height,geopt,theta,tc,tk,td,td2,rh,rh2,umet,vmet,pressure,u10m,v10m,wdir,wspd,wd10,ws10,slp,mcape,mcin,lcl,lfc,cape,cin,dbz,max_dbz,clfr'



&interp

interp_method = 0,

interp_levels = 1000.,950.,900.,850.,800.,750.,700.,650.,600.,550.,500.,450.,400.,350.,300.,250.,200.,150.,100.,

/

extrapolate = .true.



interp_method = 0,     ! 0 is model levels, -1 is nice height levels, 1 is user specified pressure/height



interp_levels = 1000.,950.,900.,850.,800.,750.,700.,650.,600.,550.,500.,450.,400.,350.,300.,250.,200.,150.,100.,

interp_levels = 0.25, 0.50, 0.75, 1.00, 2.00, 3.00, 4.00, 5.00, 6.00, 7.00, 8.00, 9.00, 10.0, 11.0, 12.0, 13.0, 14.0, 15.0, 16.0, 17.0, 18.0, 19.0, 20.0,


This is my namelist.ARWpost.  The only lines I changed in this file before running the program were the start date, the end date and the input file name.  I don't see why you couldn't name the output files (the .ctl and the .dat) whatever you wish, but it's possible that renaming the file has corrupted it somehow or that ARWpost cannot accept files with names like this.  My suggestion would be to try and rename the t10 file (and others like it) back to their original names and try again.  To keep the files organized, maybe you could create several directories that would contain each model run and its related wrfout files.

If possible, complete another model run and leave the wrfout files in the ../WRFV3/run directory.  Try and run ARWpost.exe while the wrfout files are still in this location and still have the wrfout_d01____ name.  In doing so, your process would completely match mine and we might be able to see if the problem is related to your file names or if it is related to ARWpost not compiling correctly.

Please respond with any additional questions or problems that you run into.  The attached screenshots show my completion of ARWpost using the namelist above.

Jeremy Young.



From: jasonpadovani at gmail.com [mailto:jasonpadovani at gmail.com] On Behalf Of Jason Padovani Ginies
Sent: Sunday, November 13, 2011 2:17 AM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Hi Jeremy,

Thank you for your time. I did not get the attachment in the email, could you please send it again?

What I''ve tried so far and the errors I get:

  *   I've made two directories WRFinput [in which I have a wrf output file named t10] and OUTPUT in the ARWpost directory. So in the input and output root name of the namelist i've put (respectively) './WRFinput/t10' and './OUTPUT/test'. I adjusted the dates and the error I get is:
     *    !!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!
ls: ./WRFinput/t10: Value too large for defined data type
ls: ./WRFinput/t10: Value too large for defined data type
 Oops, we need at least ONE input file for the program to read.



  *   I've tried to put 'WRFinput/' as the input root name so that ARWpost looks for the files automatically in the directory and the error I get is
     *
!!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!

FOUND the following input files:
 t10

START PROCESSING DATA

   WARNING --- I do not recognize this data.

               Will make an attempt to read it.


 Processing  time --- 2011-01-24_12:00:00
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image                              PC                Routine            Line        Source
ARWpost.exe        000000000040CC91  Unknown         Unknown  Unknown
ARWpost.exe        0000000000419E58  Unknown         Unknown  Unknown
ARWpost.exe        0000000000419395   Unknown         Unknown  Unknown
ARWpost.exe        0000000000409E78   Unknown         Unknown  Unknown
ARWpost.exe        0000000000408BEC  Unknown         Unknown  Unknown
libc.so.6                00000030D141D994  Unknown         Unknown  Unknown
ARWpost.exe        0000000000408AE9  Unknown         Unknown  Unknown

I can't see where I am going wrong?! perhaps you have come across such errors before?

Thanks again

Jason





On Sat, Nov 12, 2011 at 1:28 PM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

What exactly is your problem?  Maybe the paths to your wrfout files are incorrect?  I've attached the namelist file.  The only things I had to change in the namelist when running ARWpost.exe were the start date, the end date and the name of my wrfout file.

I hope the namelist helps.  If you run into any additional problems I can try and help.

Jeremy Young

From: jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com> [mailto:jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com>] On Behalf Of Jason Padovani Ginies
Sent: Friday, November 11, 2011 8:22 PM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Dear Jeremy,

Thank you for your email. In fact the first modification seems like to have solved the problem already and I now have ARWpost.exe. I still cannot make it work however =( I cannot understand what I am doing wrong to get different error messages. Could I kindly ask you to explain the procedure if you have expertise in the matter? I've tried renaming/relocating and changing the input file and adjusting the namelist accordingly but still I can't seem to get it right.

Could you kindly send me a copy of your namelist.ARWpost and specify the following:

  *   location and name of input(WRF output) files relative to ARWpost.exe

Many thanks,

Jason
On Fri, Nov 11, 2011 at 12:42 AM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

I've seen a similar error message before when attempting to compile ARWpost.  I fixed this problem by adding the following to the configure.arwp file:

--LDFLAGS should now have -L/path/to/netcdf/lib   -lnetcdf -lnetcdff
--CPPFLAGS should now have -I/path/to/netcdf/include  and -R/path/to/netcdf/lib
--Change the "-O" flags to match that of netcdf during compile, probably "-O2".

Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix your problem.  The-R/path/to/netcdf/lib will eliminate another problem that I ran into when trying to run ARWpost.exe in which an error message saying that there was an "error opening shared libraries ...".  If you see this message, you can use a command like " ln -s /path/to/netcdf/lib/libnetcdf* ." issued from the ARWpost directory to link the necessary libraries and allow them to be referenced.

I hope this helps.

Jeremy Young
System Administrator
Climate Research Lab
Western Kentucky University

From: wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu> [mailto:wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu>] On Behalf Of Jason Padovani Ginies
Sent: Thursday, November 10, 2011 1:08 PM
To: wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>
Subject: [Wrf-users] ARWpost for GrADS application

Dear wrf-users,

I am having trouble compiling ARWposts. When I try to compile I get lots of error messages looking like this:

input_module.f:(.text+0x40f): undefined reference to `ncvgt_'

and eventually are confronted with a final error message saying:

make: [ARWpost.exe] Error 1 (ignored)

Some research has led me to believe that the netCDF on the system might causing this problem and that I might have to re-compile that
Is there any way to go around this perhaps another method of converting wrf output in a format readable by GrADS?

Kind regards,

Jason Padovani Ginies
Final Year B.Sc. student
Department of Physics
University of Malta

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users


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From wrf at nusculus.com  Fri Nov 11 15:59:17 2011
From: wrf at nusculus.com (Kevin Matthew Nuss)
Date: Fri, 11 Nov 2011 15:59:17 -0700
Subject: [Wrf-users] ungrib.exe error
In-Reply-To: <4EBD2EC1.5060109@bol.com.br>
References: <4EBD2EC1.5060109@bol.com.br>
Message-ID: <CALZketEFokw+ADgQ9LEZX9EP9XnAye1TbUt_6THepKE6_znBYQ@mail.gmail.com>

Hi Gisele,

You mention that the error comes from ungrib.exe but you give information
from namelist.input rather than namelist.wps. Perhaps you changed the wrong
namelist file. If not, then you did not give enough information to provide
you with help.

Even if you meant " I set in namelist.wps the following:" the format of the
time specifications shown is the format used for namelist.input, not
namelist.wps

Trying to help,
Kevin Matthew Nuss

On Fri, Nov 11, 2011 at 7:18 AM, Gisele dos Santos Zepka <
giselezepka at bol.com.br> wrote:

> Hello all,
>
> I want to run a 25 hours simulation in wrf 3.3.1. I am getting an error
> in ungrib.exe.
>
> I set in namelist.input the following:
>
> ...
> start_hour = 0
> start_year = 2009
> start_month = 12
> start_day = 3
> ...
> end_hour = 0
> end_year = 2009
> end_month = 12
> end_day = 4
>
>
> I add as input data:
>
> gfs_4_2009-12-03_0000_000.grb2
> gfs_4_2009-12-03_0000_003.grb2
> ...
> gfs_4_2009-12-03_0000_024.grb2
>
>
> The error is:
>
> 2011-11-11 11:29:58.568 ---  *** StarError_ndate
>  GETH_IDTS:  Hour of NDATE =            24
>  Screwy NDATE: 2009-12-03_24:00:00
>
> What am I doing wrong?
>
> Thanks very much for any help
>
> Gisele
>
> --
> ____________________________________________
>
> Dra. Gisele dos Santos Zepka Saraiva
> Meteorologist - Atmopheric Electricity
> National Institute for Space Research - INPE
> Av. dos Astronautas, 1758
> S?o Jos? dos Campos, SP
> Brazil, 12227-010
>
> Phone:++55(12) 3208-6841
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
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From jeremy.young868 at topper.wku.edu  Mon Nov 14 09:53:39 2011
From: jeremy.young868 at topper.wku.edu (Young, Jeremy, K)
Date: Mon, 14 Nov 2011 16:53:39 +0000
Subject: [Wrf-users] ARWpost for GrADS application
In-Reply-To: <CAHJ3cyPOx=VXo6Tdd8vSaVkkRHqvRBE0asAr9vQ_8ExQB+ut0g@mail.gmail.com>
References: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C906A0@SN2PRD0302MB123.namprd03.prod.outlook.com>
	<CAHJ3cyMs3KC=JHOQSTtZz0jboDSCv90OtNLtDQzQ0jLizsj6+g@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C98C06@CH1PRD0302MB132.namprd03.prod.outlook.com>
	<CAHJ3cyN_-C7eJp8ncxfjisW6Yje5Pxt8rUFyxNMV9n=j6cRHWw@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C98D4F@CH1PRD0302MB132.namprd03.prod.outlook.com>,
	<CAHJ3cyPOx=VXo6Tdd8vSaVkkRHqvRBE0asAr9vQ_8ExQB+ut0g@mail.gmail.com>
Message-ID: <50C0D80B700AFB4597C07F946592F09727C98EBB@CH1PRD0302MB132.namprd03.prod.outlook.com>

Hi Jason,

Here is my configure.arwp.  I did indeed have to make the previously mentioned modifications in order to compile ARWpost.  The only thing different about this file compared to some of my suggested changes to the configure.arwp file is that I did not have to change the "-O" flag to "-O2".  The first time I successfully got ARWpost to compile, I did make this change.  After trying the "-R/.../netcdf/lib" flag, I did not need to make this change any longer.

I've also pasted my .bashrc in case it may be of use.  I hope these files help.

# configure.arwp
#
# This file was automatically generated by the configure script in the
# top level directory. You may make changes to the settings in this
# file but be aware they will be overwritten each time you run configure.
# Ordinarily, it is necessary to run configure once, when the code is
# first installed.
#
# To permanently change options, change the settings for your platform
# in the file arch/configure.defaults, the preamble, and the postamble -
# then rerun configure.
#

.SUFFIXES: .F90 .f90 .F .f .c .o

SHELL           	=       /bin/sh

# Listing of options that are usually independent of machine type.
# When necessary, these are over-ridden by each architecture.

ARFLAGS			=	

PERL			=	perl

RANLIB			=	echo

#### Architecture specific settings ####

# Settings for PC Linux i486 i586 i686 x86_64, PGI compiler	
#
FC		=	pgf90
FFLAGS		=	-Mfree -byteswapio -O
F77FLAGS	=	-byteswapio -O
FNGFLAGS	=	$(FFLAGS)
LDFLAGS		=	-L/home/jyoung/WRFmodel/netcdf/lib -lnetcdf -lnetcdff
CC		=	gcc
CFLAGS		=	-O
CPP		=	/lib/cpp -C -P -traditional
CPPFLAGS	=	-DIO_NETCDF -DIO_GRIB1 -DIO_BINARY -DRECL4 -Dbytesw -R/home/jyoung/WRFmodel/netcdf/lib

###########################################################
#
#	Macros, these should be generic for all machines

LN		=	ln -sf
MAKE		=	make -i -r
RM		= 	/bin/rm -f
CP		= 	/bin/cp
AR		=	ar ru


.IGNORE:
.SUFFIXES: .c .f90 .F90 .f .F .o

#	There is probably no reason to modify these rules

.c.o:
	$(RM) $@
	$(CC) $(CPPFLAGS) $(CFLAGS) -c $<	

.f90.o:
	$(RM) $@ $*.mod
	$(CP) $< $*.f
	$(FC) $(FFLAGS) -I${NETCDF}/include -c $*.f 
	$(RM) $*.f

.F90.o:
	$(RM) $@ $*.mod
	$(CPP) $(CPPFLAGS) $(FDEFS) $< > $*.f
	$(FC) $(FFLAGS) -I${NETCDF}/include -c $*.f 
	$(RM) $*.f






# .bashrc

# Source global definitions
if [ -f /etc/bashrc ]; then
	. /etc/bashrc
fi

PATH=$PATH:$HOME/bin

export PATH

# PGI SETTINGS
PGI=/opt/pgi; export PGI
PATH=/opt/pgi/linux86-64/10.8/bin:$PATH; export PATH
MANPATH=$MANPATH:/opt/pgi/linux86-64/10.8/man; export MANPATH
LM_LICENSE_FILE=$LM_LICENSE_FILE:/opt/pgi/license.dat; export LM_LICENSE_FILE

# WRF SETTINGS
NETCDF=/home/jyoung/WRFmodel/netcdf; export NETCDF
PATH=/home/jyoung/WRFmodel/netcdf/bin:$PATH; export PATH
JASPERLIB=/usr/lib64; export JASPERLIB
JASPERINC=/usr/local/include/jasper; export JASPERINC
WRF_EM_CORE=1; export WRF_EM_CORE
WRF_NMM_CORE=0; export WRF_NMM_CORE
WRFIO_NCD_LARGE_FILE_SUPPORT=1; export WRFIO_NCD_LARGE_FILE_SUPPORT
LD_LIBRARY_PATH=/home/jyoung/WRFmodel/netcdf/lib:$LD_LIBRARY_PATH; export LD_LIBRARY_PATH
LD_LIBRARY_PATH=/home/jyoung/WRFmodel/hdf5/lib:$LD_LIBRARY_PATH; export LD_LIBRARY_PATH


#MPICH SETTINGS
PATH=/home/jyoung/WRFmodel/mpich/bin:$PATH; export PATH

#GRADS SETTINGS
PATH=/home/jyoung/WRFmodel/grads/bin:$PATH; export PATH



Jeremy Young

________________________________________
From: jasonpadovani at gmail.com [jasonpadovani at gmail.com] on behalf of Jason Padovani Ginies [jpad0001 at um.edu.mt]
Sent: Monday, November 14, 2011 10:00 AM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Hi there,

Thanks for your last detailed email. I have a script which copies the run directory to an output location so not to mess up run/ itself if anything goes wrong. What's different is only the paths so things should work fine.

My namelist now has

 start_date = '2011-01-24_12:00:00',
 end_date   = '2011-01-27_12:00:00',

and

&io
 input_root_name = '/home/wrf/OUTPUT/LES-Tests/test11/wrfout_d03_2011-01-24_12:00:00'
 output_root_name = './OUTPUT/test'

and is otherwise the same.

Again the output I get is

!!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!
ls: /home/wrf/OUTPUT/LES-Tests/test11/wrfout_d03_2011-01-24_12:00:00: Value too large for defined data type
ls: /home/wrf/OUTPUT/LES-Tests/test11/wrfout_d03_2011-01-24_12:00:00: Value too large for defined data type
 Oops, we need at least ONE input file for the program to read.

I am now thinking it might be a problem in the compilation or it is the fact that since ls is not producing an actual output for ARWpost, then the process is coming to a halt. The last few lines of the compilation in fact read

                -L/home/wrf/ARWpost/netcdf_links/lib -I/home/wrf/ARWpost/netcdf_links/include  -lnetcdf
/cm/shared/apps/intel/Compiler/11.1/046/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail

Did you have to go through the modifications you have listed in the first email in order to compile ARWpost ? And if yes, could I kindly ask you to send me the configure.arwp file please?

Once again thank you for your time, I know this must be getting frustrating.

Jason



On Sun, Nov 13, 2011 at 6:33 PM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

If I?m understanding your procedure, you have renamed the wrfout files produced by wrf.exe to a different name (your example is t10).  I have not used ARWpost very often, but I?m not sure if ARWpost.exe can understand what it?s reading if the wrfout files are renamed.  Looking at the errors you are seeing, I think that this may be your problem.  It?s either that the renamed files are not being understood by ARWpost.exe or that there was an error in the compilation of ARWpost.


&datetime

start_date = '1998-09-01_00:00:00',

end_date   = '1998-09-05_00:00:00',

interval_seconds = 10800,

tacc = 0,

debug_level = 0,

/



&io

input_root_name = '../WRFV3/run/wrfout_d01_1998-09-01_00:00:00'

output_root_name = './test'

plot = 'all_list'

fields = 'height,pressure,tk,tc'

mercator_defs = .true.

/

split_output = .true.

frames_per_outfile = 2





plot = 'all'

plot = 'list'

 plot = 'all_list'

! Below is a list of all available diagnostics

fields = 'height,geopt,theta,tc,tk,td,td2,rh,rh2,umet,vmet,pressure,u10m,v10m,wdir,wspd,wd10,ws10,slp,mcape,mcin,lcl,lfc,cape,cin,dbz,max_dbz,clfr'



&interp

interp_method = 0,

interp_levels = 1000.,950.,900.,850.,800.,750.,700.,650.,600.,550.,500.,450.,400.,350.,300.,250.,200.,150.,100.,

/

extrapolate = .true.



interp_method = 0,     ! 0 is model levels, -1 is nice height levels, 1 is user specified pressure/height



interp_levels = 1000.,950.,900.,850.,800.,750.,700.,650.,600.,550.,500.,450.,400.,350.,300.,250.,200.,150.,100.,

interp_levels = 0.25, 0.50, 0.75, 1.00, 2.00, 3.00, 4.00, 5.00, 6.00, 7.00, 8.00, 9.00, 10.0, 11.0, 12.0, 13.0, 14.0, 15.0, 16.0, 17.0, 18.0, 19.0, 20.0,


This is my namelist.ARWpost.  The only lines I changed in this file before running the program were the start date, the end date and the input file name.  I don?t see why you couldn?t name the output files (the .ctl and the .dat) whatever you wish, but it?s possible that renaming the file has corrupted it somehow or that ARWpost cannot accept files with names like this.  My suggestion would be to try and rename the t10 file (and others like it) back to their original names and try again.  To keep the files organized, maybe you could create several directories that would contain each model run and its related wrfout files.

If possible, complete another model run and leave the wrfout files in the ../WRFV3/run directory.  Try and run ARWpost.exe while the wrfout files are still in this location and still have the wrfout_d01____ name.  In doing so, your process would completely match mine and we might be able to see if the problem is related to your file names or if it is related to ARWpost not compiling correctly.

Please respond with any additional questions or problems that you run into.  The attached screenshots show my completion of ARWpost using the namelist above.

Jeremy Young.



From: jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com> [mailto:jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com>] On Behalf Of Jason Padovani Ginies
Sent: Sunday, November 13, 2011 2:17 AM

To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Hi Jeremy,

Thank you for your time. I did not get the attachment in the email, could you please send it again?

What I''ve tried so far and the errors I get:

  *   I've made two directories WRFinput [in which I have a wrf output file named t10] and OUTPUT in the ARWpost directory. So in the input and output root name of the namelist i've put (respectively) './WRFinput/t10' and './OUTPUT/test'. I adjusted the dates and the error I get is:
     *    !!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!
ls: ./WRFinput/t10: Value too large for defined data type
ls: ./WRFinput/t10: Value too large for defined data type
 Oops, we need at least ONE input file for the program to read.



  *   I've tried to put 'WRFinput/' as the input root name so that ARWpost looks for the files automatically in the directory and the error I get is
     *
!!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!

FOUND the following input files:
 t10

START PROCESSING DATA

   WARNING --- I do not recognize this data.

               Will make an attempt to read it.


 Processing  time --- 2011-01-24_12:00:00
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image                              PC                Routine            Line        Source
ARWpost.exe        000000000040CC91  Unknown         Unknown  Unknown
ARWpost.exe        0000000000419E58  Unknown         Unknown  Unknown
ARWpost.exe        0000000000419395   Unknown         Unknown  Unknown
ARWpost.exe        0000000000409E78   Unknown         Unknown  Unknown
ARWpost.exe        0000000000408BEC  Unknown         Unknown  Unknown
libc.so.6                00000030D141D994  Unknown         Unknown  Unknown
ARWpost.exe        0000000000408AE9  Unknown         Unknown  Unknown

I can't see where I am going wrong?! perhaps you have come across such errors before?

Thanks again

Jason





On Sat, Nov 12, 2011 at 1:28 PM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

What exactly is your problem?  Maybe the paths to your wrfout files are incorrect?  I?ve attached the namelist file.  The only things I had to change in the namelist when running ARWpost.exe were the start date, the end date and the name of my wrfout file.

I hope the namelist helps.  If you run into any additional problems I can try and help.

Jeremy Young

From: jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com> [mailto:jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com>] On Behalf Of Jason Padovani Ginies
Sent: Friday, November 11, 2011 8:22 PM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Dear Jeremy,

Thank you for your email. In fact the first modification seems like to have solved the problem already and I now have ARWpost.exe. I still cannot make it work however =( I cannot understand what I am doing wrong to get different error messages. Could I kindly ask you to explain the procedure if you have expertise in the matter? I've tried renaming/relocating and changing the input file and adjusting the namelist accordingly but still I can't seem to get it right.

Could you kindly send me a copy of your namelist.ARWpost and specify the following:

  *   location and name of input(WRF output) files relative to ARWpost.exe

Many thanks,

Jason
On Fri, Nov 11, 2011 at 12:42 AM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

I?ve seen a similar error message before when attempting to compile ARWpost.  I fixed this problem by adding the following to the configure.arwp file:

--LDFLAGS should now have ?L/path/to/netcdf/lib   ?lnetcdf ?lnetcdff
--CPPFLAGS should now have ?I/path/to/netcdf/include  and ?R/path/to/netcdf/lib
--Change the ?-O? flags to match that of netcdf during compile, probably ?-O2?.

Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix your problem.  The-R/path/to/netcdf/lib will eliminate another problem that I ran into when trying to run ARWpost.exe in which an error message saying that there was an ?error opening shared libraries ??.  If you see this message, you can use a command like ? ln ?s /path/to/netcdf/lib/libnetcdf* .? issued from the ARWpost directory to link the necessary libraries and allow them to be referenced.

I hope this helps.

Jeremy Young
System Administrator
Climate Research Lab
Western Kentucky University

From: wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu> [mailto:wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu>] On Behalf Of Jason Padovani Ginies
Sent: Thursday, November 10, 2011 1:08 PM
To: wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>
Subject: [Wrf-users] ARWpost for GrADS application

Dear wrf-users,

I am having trouble compiling ARWposts. When I try to compile I get lots of error messages looking like this:

input_module.f:(.text+0x40f): undefined reference to `ncvgt_'

and eventually are confronted with a final error message saying:

make: [ARWpost.exe] Error 1 (ignored)

Some research has led me to believe that the netCDF on the system might causing this problem and that I might have to re-compile that
Is there any way to go around this perhaps another method of converting wrf output in a format readable by GrADS?

Kind regards,

Jason Padovani Ginies
Final Year B.Sc. student
Department of Physics
University of Malta

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users



_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users




From jeremy.young868 at topper.wku.edu  Mon Nov 14 14:14:24 2011
From: jeremy.young868 at topper.wku.edu (Young, Jeremy, K)
Date: Mon, 14 Nov 2011 21:14:24 +0000
Subject: [Wrf-users] ARWpost for GrADS application
In-Reply-To: <CAHJ3cyPqUd9Ndd+1pq2DOK-GwZ6exBckC=ukoq__HjdjX8twPw@mail.gmail.com>
References: <CAHJ3cyMem4CKok8aePjT6ie2Wfg2niSXxeEOHatxHRq0EodNUA@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C906A0@SN2PRD0302MB123.namprd03.prod.outlook.com>
	<CAHJ3cyMs3KC=JHOQSTtZz0jboDSCv90OtNLtDQzQ0jLizsj6+g@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C98C06@CH1PRD0302MB132.namprd03.prod.outlook.com>
	<CAHJ3cyN_-C7eJp8ncxfjisW6Yje5Pxt8rUFyxNMV9n=j6cRHWw@mail.gmail.com>
	<50C0D80B700AFB4597C07F946592F09727C98D4F@CH1PRD0302MB132.namprd03.prod.outlook.com>
	<CAHJ3cyPOx=VXo6Tdd8vSaVkkRHqvRBE0asAr9vQ_8ExQB+ut0g@mail.gmail.com>,
	<CAHJ3cyPqUd9Ndd+1pq2DOK-GwZ6exBckC=ukoq__HjdjX8twPw@mail.gmail.com>
Message-ID: <50C0D80B700AFB4597C07F946592F09727C98EF6@CH1PRD0302MB132.namprd03.prod.outlook.com>

Hi Jason,

I'm glad that you figured out what your problem was.  For my knowledge in helping other students that may run into this problem, what exactly did you do to get ARWpost to work correctly?  Was it a compilation issue?

Thanks for the information!

Jeremy Young

________________________________________
From: jasonpadovani at gmail.com [jasonpadovani at gmail.com] on behalf of Jason Padovani Ginies [jpad0001 at um.edu.mt]
Sent: Monday, November 14, 2011 11:26 AM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Dear Jeremy,

I think I found what the problem is. I tried running a quick simulation producing a file which is less than 2Gb in size. Guess what?


!!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!

FOUND the following input files:
 /home/wrf/OUTPUT/run_kernel/wrfout_d01_2011-01-24_12:00:00

START PROCESSING DATA

 Processing  time --- 2011-01-24_12:00:00
   Found the right date - continue

 Processing  time --- 2011-01-24_15:00:00
   Found the right date - continue

 Processing  time --- 2011-01-24_18:00:00
   Found the right date - continue

 Processing  time --- 2011-01-24_21:00:00
   Found the right date - continue

 Processing  time --- 2011-01-25_00:00:00
   Found the right date - continue

 Processing  time --- 2011-01-25_03:00:00
   Found the right date - continue

 Processing  time --- 2011-01-25_06:00:00
   Found the right date - continue

 Processing  time --- 2011-01-25_09:00:00
   Found the right date - continue

 Processing  time --- 2011-01-25_12:00:00
   Found the right date - continue

DONE Processing Data

CREATING .ctl file

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!  Successful completion of ARWpost  !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!


On Mon, Nov 14, 2011 at 5:00 PM, Jason Padovani Ginies <jpad0001 at um.edu.mt<mailto:jpad0001 at um.edu.mt>> wrote:
Hi there,

Thanks for your last detailed email. I have a script which copies the run directory to an output location so not to mess up run/ itself if anything goes wrong. What's different is only the paths so things should work fine.

My namelist now has

 start_date = '2011-01-24_12:00:00',
 end_date   = '2011-01-27_12:00:00',

and

&io
 input_root_name = '/home/wrf/OUTPUT/LES-Tests/test11/wrfout_d03_2011-01-24_12:00:00'
 output_root_name = './OUTPUT/test'

and is otherwise the same.

Again the output I get is

!!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!
ls: /home/wrf/OUTPUT/LES-Tests/test11/wrfout_d03_2011-01-24_12:00:00: Value too large for defined data type
ls: /home/wrf/OUTPUT/LES-Tests/test11/wrfout_d03_2011-01-24_12:00:00: Value too large for defined data type

 Oops, we need at least ONE input file for the program to read.


I am now thinking it might be a problem in the compilation or it is the fact that since ls is not producing an actual output for ARWpost, then the process is coming to a halt. The last few lines of the compilation in fact read

                -L/home/wrf/ARWpost/netcdf_links/lib -I/home/wrf/ARWpost/netcdf_links/include  -lnetcdf
/cm/shared/apps/intel/Compiler/11.1/046/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail

Did you have to go through the modifications you have listed in the first email in order to compile ARWpost ? And if yes, could I kindly ask you to send me the configure.arwp file please?

Once again thank you for your time, I know this must be getting frustrating.

Jason




On Sun, Nov 13, 2011 at 6:33 PM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

If I?m understanding your procedure, you have renamed the wrfout files produced by wrf.exe to a different name (your example is t10).  I have not used ARWpost very often, but I?m not sure if ARWpost.exe can understand what it?s reading if the wrfout files are renamed.  Looking at the errors you are seeing, I think that this may be your problem.  It?s either that the renamed files are not being understood by ARWpost.exe or that there was an error in the compilation of ARWpost.


&datetime

start_date = '1998-09-01_00:00:00',

end_date   = '1998-09-05_00:00:00',

interval_seconds = 10800,

tacc = 0,

debug_level = 0,

/



&io

input_root_name = '../WRFV3/run/wrfout_d01_1998-09-01_00:00:00'

output_root_name = './test'

plot = 'all_list'

fields = 'height,pressure,tk,tc'

mercator_defs = .true.

/

split_output = .true.

frames_per_outfile = 2





plot = 'all'

plot = 'list'

 plot = 'all_list'

! Below is a list of all available diagnostics

fields = 'height,geopt,theta,tc,tk,td,td2,rh,rh2,umet,vmet,pressure,u10m,v10m,wdir,wspd,wd10,ws10,slp,mcape,mcin,lcl,lfc,cape,cin,dbz,max_dbz,clfr'



&interp

interp_method = 0,

interp_levels = 1000.,950.,900.,850.,800.,750.,700.,650.,600.,550.,500.,450.,400.,350.,300.,250.,200.,150.,100.,

/

extrapolate = .true.



interp_method = 0,     ! 0 is model levels, -1 is nice height levels, 1 is user specified pressure/height



interp_levels = 1000.,950.,900.,850.,800.,750.,700.,650.,600.,550.,500.,450.,400.,350.,300.,250.,200.,150.,100.,

interp_levels = 0.25, 0.50, 0.75, 1.00, 2.00, 3.00, 4.00, 5.00, 6.00, 7.00, 8.00, 9.00, 10.0, 11.0, 12.0, 13.0, 14.0, 15.0, 16.0, 17.0, 18.0, 19.0, 20.0,


This is my namelist.ARWpost.  The only lines I changed in this file before running the program were the start date, the end date and the input file name.  I don?t see why you couldn?t name the output files (the .ctl and the .dat) whatever you wish, but it?s possible that renaming the file has corrupted it somehow or that ARWpost cannot accept files with names like this.  My suggestion would be to try and rename the t10 file (and others like it) back to their original names and try again.  To keep the files organized, maybe you could create several directories that would contain each model run and its related wrfout files.

If possible, complete another model run and leave the wrfout files in the ../WRFV3/run directory.  Try and run ARWpost.exe while the wrfout files are still in this location and still have the wrfout_d01____ name.  In doing so, your process would completely match mine and we might be able to see if the problem is related to your file names or if it is related to ARWpost not compiling correctly.

Please respond with any additional questions or problems that you run into.  The attached screenshots show my completion of ARWpost using the namelist above.

Jeremy Young.



From: jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com> [mailto:jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com>] On Behalf Of Jason Padovani Ginies
Sent: Sunday, November 13, 2011 2:17 AM

To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Hi Jeremy,

Thank you for your time. I did not get the attachment in the email, could you please send it again?

What I''ve tried so far and the errors I get:

  *   I've made two directories WRFinput [in which I have a wrf output file named t10] and OUTPUT in the ARWpost directory. So in the input and output root name of the namelist i've put (respectively) './WRFinput/t10' and './OUTPUT/test'. I adjusted the dates and the error I get is:
     *    !!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!
ls: ./WRFinput/t10: Value too large for defined data type
ls: ./WRFinput/t10: Value too large for defined data type
 Oops, we need at least ONE input file for the program to read.



  *   I've tried to put 'WRFinput/' as the input root name so that ARWpost looks for the files automatically in the directory and the error I get is
     *
!!!!!!!!!!!!!!!!
  ARWpost v3.1
!!!!!!!!!!!!!!!!

FOUND the following input files:
 t10

START PROCESSING DATA

   WARNING --- I do not recognize this data.

               Will make an attempt to read it.


 Processing  time --- 2011-01-24_12:00:00
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image                              PC                Routine            Line        Source
ARWpost.exe        000000000040CC91  Unknown         Unknown  Unknown
ARWpost.exe        0000000000419E58  Unknown         Unknown  Unknown
ARWpost.exe        0000000000419395   Unknown         Unknown  Unknown
ARWpost.exe        0000000000409E78   Unknown         Unknown  Unknown
ARWpost.exe        0000000000408BEC  Unknown         Unknown  Unknown
libc.so.6                00000030D141D994  Unknown         Unknown  Unknown
ARWpost.exe        0000000000408AE9  Unknown         Unknown  Unknown

I can't see where I am going wrong?! perhaps you have come across such errors before?

Thanks again

Jason





On Sat, Nov 12, 2011 at 1:28 PM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

What exactly is your problem?  Maybe the paths to your wrfout files are incorrect?  I?ve attached the namelist file.  The only things I had to change in the namelist when running ARWpost.exe were the start date, the end date and the name of my wrfout file.

I hope the namelist helps.  If you run into any additional problems I can try and help.

Jeremy Young

From: jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com> [mailto:jasonpadovani at gmail.com<mailto:jasonpadovani at gmail.com>] On Behalf Of Jason Padovani Ginies
Sent: Friday, November 11, 2011 8:22 PM
To: Young, Jeremy, K
Subject: Re: [Wrf-users] ARWpost for GrADS application

Dear Jeremy,

Thank you for your email. In fact the first modification seems like to have solved the problem already and I now have ARWpost.exe. I still cannot make it work however =( I cannot understand what I am doing wrong to get different error messages. Could I kindly ask you to explain the procedure if you have expertise in the matter? I've tried renaming/relocating and changing the input file and adjusting the namelist accordingly but still I can't seem to get it right.

Could you kindly send me a copy of your namelist.ARWpost and specify the following:

  *   location and name of input(WRF output) files relative to ARWpost.exe

Many thanks,

Jason
On Fri, Nov 11, 2011 at 12:42 AM, Young, Jeremy, K <jeremy.young868 at topper.wku.edu<mailto:jeremy.young868 at topper.wku.edu>> wrote:
Hi Jason,

I?ve seen a similar error message before when attempting to compile ARWpost.  I fixed this problem by adding the following to the configure.arwp file:

--LDFLAGS should now have ?L/path/to/netcdf/lib   ?lnetcdf ?lnetcdff
--CPPFLAGS should now have ?I/path/to/netcdf/include  and ?R/path/to/netcdf/lib
--Change the ?-O? flags to match that of netcdf during compile, probably ?-O2?.

Changing the optimization flags, LDFLAGS and CPPFLAGS will likely fix your problem.  The-R/path/to/netcdf/lib will eliminate another problem that I ran into when trying to run ARWpost.exe in which an error message saying that there was an ?error opening shared libraries ??.  If you see this message, you can use a command like ? ln ?s /path/to/netcdf/lib/libnetcdf* .? issued from the ARWpost directory to link the necessary libraries and allow them to be referenced.

I hope this helps.

Jeremy Young
System Administrator
Climate Research Lab
Western Kentucky University

From: wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu> [mailto:wrf-users-bounces at ucar.edu<mailto:wrf-users-bounces at ucar.edu>] On Behalf Of Jason Padovani Ginies
Sent: Thursday, November 10, 2011 1:08 PM
To: wrf-users at ucar.edu<mailto:wrf-users at ucar.edu>
Subject: [Wrf-users] ARWpost for GrADS application

Dear wrf-users,

I am having trouble compiling ARWposts. When I try to compile I get lots of error messages looking like this:

input_module.f:(.text+0x40f): undefined reference to `ncvgt_'

and eventually are confronted with a final error message saying:

make: [ARWpost.exe] Error 1 (ignored)

Some research has led me to believe that the netCDF on the system might causing this problem and that I might have to re-compile that
Is there any way to go around this perhaps another method of converting wrf output in a format readable by GrADS?

Kind regards,

Jason Padovani Ginies
Final Year B.Sc. student
Department of Physics
University of Malta

_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users



_______________________________________________
Wrf-users mailing list
Wrf-users at ucar.edu<mailto:Wrf-users at ucar.edu>
http://mailman.ucar.edu/mailman/listinfo/wrf-users





From tanxiangshan2005 at 126.com  Wed Nov 16 01:37:18 2011
From: tanxiangshan2005 at 126.com (tanxiangshan2005)
Date: Wed, 16 Nov 2011 16:37:18 +0800
Subject: [Wrf-users] about droplet effective radius
Message-ID: <201111161637180539261@126.com>

Dear Pro:
      Recently , I want to output droplet effective radius by using WRFchem model,Please tell me how to do ?
or generally , how to calculate droplet effective radius from the output varies.

Thank you very much

Jingjing Shang
2011-11-16



tanxiangshan2005
2011-11-16
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From Mouhamad.Al-Sayed-Ali at u-bourgogne.fr  Thu Nov 17 08:56:32 2011
From: Mouhamad.Al-Sayed-Ali at u-bourgogne.fr (Mouhamad Al-Sayed-Ali)
Date: Thu, 17 Nov 2011 16:56:32 +0100
Subject: [Wrf-users] Global WRF
Message-ID: <20111117165632.151874hsbvdv9zgo@webmail.u-bourgogne.fr>

Hello everyone,

  I have been trying to use WRF as a global. I have compiled it, but  
when I run the "wrf.Exe" I get some strange results(I only get zeros  
numbers). If someone has already used global WRF, could you please  
send me the "namelist.input" and "namelist.wps" you have used.


Many thanks for your help


Mouhamad

From jians at umn.edu  Fri Nov 18 12:51:11 2011
From: jians at umn.edu (Jian Sun)
Date: Fri, 18 Nov 2011 13:51:11 -0600
Subject: [Wrf-users] problem of running WRF with 2+ threads on Mac
Message-ID: <CAPRUWtZZK=U=X4Rxybhnncv4MNH2nk_7arY_j4msQhRc+AhrDA@mail.gmail.com>

Hi everyone,

I have a problem of running WRF on my Mac pro with Lion (Xcode 4.2). I am
using intel fortran composer XE and GCC (4.2).

I am able to run WRF in serial mode or in smpar mode with single thread.
But segmentation fault occurs (forrtl: severe (174): SIGSEGV, segmentation
fault occurred) when i try to run it with 2 or more threads. After a lot
searching, the most possible reason seems to be about the stack size. I did
"unlimit" in the command line, which is supposed to free the stack size,
but there is hard upper limit in mac (64MB). Then I adjusted LDFLAGS_LOCAL
option in configure.wrf, increasing -stack_size to 0x1F0000000 (about 8GB). I
still cannot make it run with 2+ threads and get the same error.

Any help or advice is truly appreciated

Jian Sun
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From mattocks at mac.com  Tue Nov 22 19:05:37 2011
From: mattocks at mac.com (Craig Mattocks)
Date: Tue, 22 Nov 2011 21:05:37 -0500
Subject: [Wrf-users] problem of running WRF with 2+ threads on Mac
Message-ID: <0DB45B6B-A529-43B8-AABF-7FC8D463FC07@mac.com>

Hi Jian,

WRF runs fine in hybrid shared + distributed memory mode on my MacBook Pro laptop (Intel Core i7, Sandy Bridge, SSD) under Mac OS X Lion. I am getting about a 10% speed boost over pure MPI.

Make sure you follow the instructions in the 'configure.wrf' file:

# increase stack size; also note that for OpenMP, set environment OMP_STACKSIZE 4G or greater
LDFLAGS_LOCAL = -ip -Wl,-stack_addr,0xF10000000 -Wl,-stack_size,0x64000000

by setting:

setenv OMP_STACKSIZE 4G

before you run your simulation.

I am also using these settings in my .cshrc file:

###############################################
# Allow unlimited memory for big executables: #
###############################################
limit datasize unlimited
limit descriptors 8912
limit memorylocked unlimited
limit memoryuse unlimited
limit stacksize unlimited

mpich2 (http://www.mcs.anl.gov/research/projects/mpich2/) runs much faster than OpenMPI for me, but beware that you have to roll back to version 12.04 of the Intel Fortran compiler (instead of 12.1.x) to build the shared library version (I have reported this bug, but Intel warned me that it will not be fixed in the immediate future). Also, remove/rename the default Apple-installed OpenMPI compilers in your /usr/bin directory:

sudo \rm /usr/bin/opal_wrapper
sudo \rm /usr/bin/orte-ps
sudo \rm /usr/bin/orte-iof
sudo \rm /usr/bin/orte-clean
sudo \rm /usr/bin/orterun
sudo \rm /usr/bin/orted
sudo \rm /usr/bin/otfmerge
sudo \rm /usr/bin/otfinfo
sudo \rm /usr/bin/otfdump
sudo \rm /usr/bin/otfdecompress -> otfcompress
sudo \rm /usr/bin/otfconfig
sudo \rm /usr/bin/otfcompress
sudo \rm /usr/bin/otfaux
sudo \rm /usr/bin/vtunify
sudo \rm /usr/bin/vtfilter
sudo \rm /usr/bin/vtf90
sudo \rm /usr/bin/vtf77
sudo \rm /usr/bin/vtcxx
sudo \rm /usr/bin/vtcc
sudo \rm /usr/bin/opari
sudo \rm /usr/bin/ompi_info
sudo \rm /usr/bin/mpif90-vt
sudo \rm /usr/bin/mpif90
sudo \rm /usr/bin/mpif77-vt
sudo \rm /usr/bin/mpif77
sudo \rm /usr/bin/mpicxx-vt
sudo \rm /usr/bin/mpicxx
sudo \rm /usr/bin/mpicc-vt
sudo \rm /usr/bin/mpicc
sudo \rm /usr/bin/mpic++-vt
sudo \rm /usr/bin/mpic++
sudo \rm /usr/bin/mpiCC-vt
sudo \rm /usr/bin/mpiCC
sudo \rm /usr/bin/ompi-server
sudo \rm /usr/bin/ompi-ps
sudo \rm /usr/bin/ompi-iof
sudo \rm /usr/bin/ompi-clean
sudo \rm /usr/bin/mpirun
sudo \rm /usr/bin/mpiexec

Some good input data for testing:

wget http://www.mmm.ucar.edu/wrf_tmp/friendly/VENDOR_small_arw_ic.tar

Hope this helps,
Craig


On Friday, 18 November 2011 at 13:51:11 -0600 Jian Sun <jians at umn.edu> wrote:

> Hi everyone,
> 
> I have a problem of running WRF on my Mac pro with Lion (Xcode 4.2). I am
> using intel fortran composer XE and GCC (4.2).
> 
> I am able to run WRF in serial mode or in smpar mode with single thread.
> But segmentation fault occurs (forrtl: severe (174): SIGSEGV, segmentation
> fault occurred) when i try to run it with 2 or more threads. After a lot
> searching, the most possible reason seems to be about the stack size. I did
> "unlimit" in the command line, which is supposed to free the stack size,
> but there is hard upper limit in mac (64MB). Then I adjusted LDFLAGS_LOCAL
> option in configure.wrf, increasing -stack_size to 0x1F0000000 (about 8GB). I
> still cannot make it run with 2+ threads and get the same error.
> 
> Any help or advice is truly appreciated
> 
> Jian Sun

From ebeigi3 at tigers.lsu.edu  Mon Nov 21 16:46:17 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Mon, 21 Nov 2011 17:46:17 -0600
Subject: [Wrf-users] Calculating precipitation?
Message-ID: <CADwy=L+OkUcvSCEEbXGLoJ1QmD_LXKehZp=ovcLM+bv6P05mPg@mail.gmail.com>

Dear Sir/Madam,

I added RAINC to RAINNC to calculate precipitation for my domain , and then
for each day , i took summation of every 6hour (00 06 12 18 )to estimate
the daily precipitation. do you think i am doing the correct way to
calculate precipitation? i think it is wrong because the simulated
precipitation has increasing trend while it  should be stochastic.


Bests,


Ehsan Beigi



-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From kedx1kii at nottingham.edu.my  Tue Nov 22 00:03:57 2011
From: kedx1kii at nottingham.edu.my (KENOBI ISIMA MORRIS)
Date: Tue, 22 Nov 2011 07:03:57 +0000
Subject: [Wrf-users] Problem compiling WRF:
Message-ID: <9DFC984430744E4E89E3FF2B58929FF801B2A3@MAILBOX2.nottingham.edu.my>

Dear Sir/Madam,

I am new to using WRF and would need help in solving this problem; during the compilation of the WRFV3 version 3.3.1, I encountered these problems at the respective lines;

2487: Fatal Error: Can't open module file 'module_cu_g3.mod' for reading at (1): No such file or directory

2520: Fatal Error: Can't open module file 'module_cu_g3.mod' for reading at (1): No such file or directory

2670: Fatal Error: Can't open module file 'module_cu_g3.mod' for reading at (1): No such file or directory

2687: Fatal Error: Can't open module file 'module_cumulus_driver.mod' for reading at (1): No such file or directory

2759: Fatal Error: Can't open module file 'module_physics_init.mod' for reading at (1): No such file or directory

2787: Fatal Error: Can't open module file 'module_physics_calls.mod' for reading at (1): No such file or directory.

The attached is the compile log file.

I would really appreciate if anyone could help me.

Thanks,

Kenobi Isima Morris

PhD Research Student
University of Nottingham Malaysia Campus<< This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. 

This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK & Malaysia legislation. >>
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From kenimor at yahoo.com  Tue Nov 22 00:09:31 2011
From: kenimor at yahoo.com (MORRIS KENOBI ISIMA)
Date: Mon, 21 Nov 2011 23:09:31 -0800 (PST)
Subject: [Wrf-users] Problem compiling WRF:
In-Reply-To: <9DFC984430744E4E89E3FF2B58929FF801D2B8@MAILBOX2.nottingham.edu.my>
References: <9DFC984430744E4E89E3FF2B58929FF801B2A3@MAILBOX2.nottingham.edu.my>
	<9DFC984430744E4E89E3FF2B58929FF801D2B8@MAILBOX2.nottingham.edu.my>
Message-ID: <1321945771.88876.YahooMailNeo@web126006.mail.ne1.yahoo.com>



Dear Sir/Madam,

I am new to using WRF and would need help in solving this problem; during the compilation of the WRFV3 version 3.3.1, I encountered these problems at the respective lines;

2487: Fatal Error: Can't open module file 'module_cu_g3.mod' for reading at (1): No such file or directory

2520: Fatal Error: Can't open module file 'module_cu_g3.mod' for reading at (1): No such file or directory

2670: Fatal Error: Can't open module file 'module_cu_g3.mod' for reading at (1): No such file or directory

2687: Fatal Error: Can't open module file 'module_cumulus_driver.mod' for reading at (1): No such file or directory

2759: Fatal Error: Can't open module file 'module_physics_init.mod' for reading at (1): No such file or directory

2787: Fatal Error: Can't open module file 'module_physics_calls.mod' for reading at (1): No such file or directory.

The attached is the compile log file.

I would really appreciate if anyone could help me.

Thanks,

Kenobi Isima Morris

PhD Research Student
University of Nottingham Malaysia Campus
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From Sean.Crowell at noaa.gov  Wed Nov 23 10:51:42 2011
From: Sean.Crowell at noaa.gov (Sean Crowell)
Date: Wed, 23 Nov 2011 11:51:42 -0600
Subject: [Wrf-users] WRFDA: Negative Heights Error
Message-ID: <A34A81A1-5BF4-4255-A241-73B27499D337@noaa.gov>

I've run WRF and generated a set of wrfout files, to use as a first  
guess for WRFDA in a 3D-Var setting.  I've linked all the files as it  
says to do in the tutorial, but when I run da_wrfvar.exe, I get the  
message "Negative height found" in my rsl.error files.  Indeed, when I  
look at the wrfout files, there are negative heights.  I know that  
this is not unusual, but I'm not sure how to correct the problem to  
make wrfvar work correctly.  Any ideas?

From tripathi at atmo.arizona.edu  Wed Nov 23 13:33:09 2011
From: tripathi at atmo.arizona.edu (Om tripathi)
Date: Wed, 23 Nov 2011 13:33:09 -0700
Subject: [Wrf-users] Re-Calculating precipitation? (Ehsan Beigi)
In-Reply-To: <mailman.980.1322079450.2168.wrf-users@ucar.edu>
References: <mailman.980.1322079450.2168.wrf-users@ucar.edu>
Message-ID: <4ECD5885.7070404@atmo.arizona.edu>

Ehsan,

WRF accumulates precipitation from the day of the start of run. So to calculate daily precipitation you need to first add RAINC and RAINNC for 00 hours of day1 and 00 hours of day2 and subtract the value for day1 from the value for day2 or vice versa. Remember: WRF keeps accumulating rains as the run prograsses.

Om 

Message: 1
Date: Mon, 21 Nov 2011 17:46:17 -0600
From: Ehsan Beigi <ebeigi3 at tigers.lsu.edu>
Subject: [Wrf-users] Calculating precipitation?
To: wrfhelp <wrfhelp at ucar.edu>, wrf-users at ucar.edu
Message-ID:
	<CADwy=L+OkUcvSCEEbXGLoJ1QmD_LXKehZp=ovcLM+bv6P05mPg at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

Dear Sir/Madam,

I added RAINC to RAINNC to calculate precipitation for my domain , and then
for each day , i took summation of every 6hour (00 06 12 18 )to estimate
the daily precipitation. do you think i am doing the correct way to
calculate precipitation? i think it is wrong because the simulated
precipitation has increasing trend while it  should be stochastic.


Bests,


Ehsan Beigi



wrf-users-request at ucar.edu wrote:
> Send Wrf-users mailing list submissions to
> 	wrf-users at ucar.edu
>
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> 	wrf-users-owner at ucar.edu
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> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Wrf-users digest..."
>
>
> Today's Topics:
>
>    1. Calculating precipitation? (Ehsan Beigi)
>    2. Problem compiling WRF: (KENOBI ISIMA MORRIS)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 21 Nov 2011 17:46:17 -0600
> From: Ehsan Beigi <ebeigi3 at tigers.lsu.edu>
> Subject: [Wrf-users] Calculating precipitation?
> To: wrfhelp <wrfhelp at ucar.edu>, wrf-users at ucar.edu
> Message-ID:
> 	<CADwy=L+OkUcvSCEEbXGLoJ1QmD_LXKehZp=ovcLM+bv6P05mPg at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Dear Sir/Madam,
>
> I added RAINC to RAINNC to calculate precipitation for my domain , and then
> for each day , i took summation of every 6hour (00 06 12 18 )to estimate
> the daily precipitation. do you think i am doing the correct way to
> calculate precipitation? i think it is wrong because the simulated
> precipitation has increasing trend while it  should be stochastic.
>
>
> Bests,
>
>
> Ehsan Beigi
>
>
>
>   
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From yamasaki at fis.ua.pt  Thu Nov 24 13:54:08 2011
From: yamasaki at fis.ua.pt (Y. Yamasaki)
Date: Thu, 24 Nov 2011 20:54:08 +0000
Subject: [Wrf-users] Wrf-users Digest, Vol 87, Issue 17
In-Reply-To: <mailman.5.1322161202.14744.wrf-users@ucar.edu>
References: <mailman.5.1322161202.14744.wrf-users@ucar.edu>
Message-ID: <web-145270499@controller.cgpmail.ua.pt>

Ref: Vol87, Issue 17.

The negative height is probably related to model top 
configuration if you are preparing your own fc files/etc.. 
ref to -  WRFVAR

look  at log files and you see that tutorial example set 
the model top to 10 hPa. So that, if you are preparing 
your own fc files you should set the top to 10 hPa OR 
change all setting by including :

p_top_requested = 5000 (if top is 50 hPa)

best regards,

yyamazaki



Em Thu, 24 Nov 2011 12:00:02 -0700
  wrf-users-request at ucar.edu escreveu:
> Send Wrf-users mailing list submissions to
> 	wrf-users at ucar.edu
> 
> To subscribe or unsubscribe via the World Wide Web, 
>visit
> 	http://mailman.ucar.edu/mailman/listinfo/wrf-users
> or, via email, send a message with subject or body 
>'help' to
> 	wrf-users-request at ucar.edu
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>more specific
> than "Re: Contents of Wrf-users digest..."
> 
> 
> Today's Topics:
> 
>   1. WRFDA: Negative Heights Error (Sean Crowell)
>   2. Re-Calculating precipitation? (Ehsan Beigi) (Om 
>tripathi)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Wed, 23 Nov 2011 11:51:42 -0600
>From: Sean Crowell <Sean.Crowell at noaa.gov>
> Subject: [Wrf-users] WRFDA: Negative Heights Error
> To: wrf-users at ucar.edu
> Message-ID: 
><A34A81A1-5BF4-4255-A241-73B27499D337 at noaa.gov>
> Content-Type: text/plain; charset=US-ASCII; 
>format=flowed; delsp=yes
> 
> I've run WRF and generated a set of wrfout files, to use 
>as a first  
> guess for WRFDA in a 3D-Var setting.  I've linked all 
>the files as it  
> says to do in the tutorial, but when I run 
>da_wrfvar.exe, I get the  
> message "Negative height found" in my rsl.error files. 
> Indeed, when I  
> look at the wrfout files, there are negative heights.  I 
>know that  
> this is not unusual, but I'm not sure how to correct the 
>problem to  
> make wrfvar work correctly.  Any ideas?
> 
> 
> ------------------------------
> 
> Message: 2
> Date: Wed, 23 Nov 2011 13:33:09 -0700
>From: Om tripathi <tripathi at atmo.arizona.edu>
> Subject: [Wrf-users] Re-Calculating precipitation? 
>(Ehsan Beigi)
> To: wrf-users at ucar.edu
> Message-ID: <4ECD5885.7070404 at atmo.arizona.edu>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> Ehsan,
> 
> WRF accumulates precipitation from the day of the start 
>of run. So to calculate daily precipitation you need to 
>first add RAINC and RAINNC for 00 hours of day1 and 00 
>hours of day2 and subtract the value for day1 from the 
>value for day2 or vice versa. Remember: WRF keeps 
>accumulating rains as the run prograsses.
> 
> Om 
> 
> Message: 1
> Date: Mon, 21 Nov 2011 17:46:17 -0600
>From: Ehsan Beigi <ebeigi3 at tigers.lsu.edu>
> Subject: [Wrf-users] Calculating precipitation?
> To: wrfhelp <wrfhelp at ucar.edu>, wrf-users at ucar.edu
> Message-ID:
> 	<CADwy=L+OkUcvSCEEbXGLoJ1QmD_LXKehZp=ovcLM+bv6P05mPg at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> Dear Sir/Madam,
> 
> I added RAINC to RAINNC to calculate precipitation for 
>my domain , and then
> for each day , i took summation of every 6hour (00 06 12 
>18 )to estimate
> the daily precipitation. do you think i am doing the 
>correct way to
> calculate precipitation? i think it is wrong because the 
>simulated
> precipitation has increasing trend while it  should be 
>stochastic.
> 
> 
> Bests,
> 
> 
> Ehsan Beigi
> 
> 
> 
> wrf-users-request at ucar.edu wrote:
>> Send Wrf-users mailing list submissions to
>> 	wrf-users at ucar.edu
>>
>> To subscribe or unsubscribe via the World Wide Web, 
>>visit
>> 	http://mailman.ucar.edu/mailman/listinfo/wrf-users
>> or, via email, send a message with subject or body 
>>'help' to
>> 	wrf-users-request at ucar.edu
>>
>> You can reach the person managing the list at
>> 	wrf-users-owner at ucar.edu
>>
>> When replying, please edit your Subject line so it is 
>>more specific
>> than "Re: Contents of Wrf-users digest..."
>>
>>
>> Today's Topics:
>>
>>    1. Calculating precipitation? (Ehsan Beigi)
>>    2. Problem compiling WRF: (KENOBI ISIMA MORRIS)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Mon, 21 Nov 2011 17:46:17 -0600
>> From: Ehsan Beigi <ebeigi3 at tigers.lsu.edu>
>> Subject: [Wrf-users] Calculating precipitation?
>> To: wrfhelp <wrfhelp at ucar.edu>, wrf-users at ucar.edu
>> Message-ID:
>> 	<CADwy=L+OkUcvSCEEbXGLoJ1QmD_LXKehZp=ovcLM+bv6P05mPg at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> Dear Sir/Madam,
>>
>> I added RAINC to RAINNC to calculate precipitation for 
>>my domain , and then
>> for each day , i took summation of every 6hour (00 06 12 
>>18 )to estimate
>> the daily precipitation. do you think i am doing the 
>>correct way to
>> calculate precipitation? i think it is wrong because the 
>>simulated
>> precipitation has increasing trend while it  should be 
>>stochastic.
>>
>>
>> Bests,
>>
>>
>> Ehsan Beigi
>>
>>
>>
>>   
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> ------------------------------
> 
> _______________________________________________
> Wrf-users mailing list
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> 
> End of Wrf-users Digest, Vol 87, Issue 17
> *****************************************


From ebeigi3 at tigers.lsu.edu  Fri Nov 25 15:41:19 2011
From: ebeigi3 at tigers.lsu.edu (Ehsan Beigi)
Date: Fri, 25 Nov 2011 16:41:19 -0600
Subject: [Wrf-users] Precipitation Zero?
Message-ID: <CADwy=LJd-W8Gf05j7jGJHULFcER4dr4Wph0sfFuB18LSpEEWyw@mail.gmail.com>

Dear Friends,

Thanks for your previous help. according to
http://www.mmm.ucar.edu/wrf/OnLineTutorial/Basics/UNGRIB/ungrib_req_fields.htm,
i didn't cosider the precipitaiton as an input to WPS, now after runnig
WRF, i got value of zero for RAINNC and RIANC, should i consider Large-scale
(stable) precipitation rate (PRECL)
and  Convective precipitation rate (PRECC) ?

I appreciate your help in advance? or what may be cause of this error?

Best Regards,

Ehsan Beigi



-- 
*Ehsan Beigi*
*PhD Student*
*Department of Civil and and Environmental Engineering
2408 Patrick F. Taylor Hall
Louisiana State University
Baton Rouge, LA, 70803*
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From Sean.Crowell at noaa.gov  Tue Nov 29 12:38:28 2011
From: Sean.Crowell at noaa.gov (Sean Crowell)
Date: Tue, 29 Nov 2011 13:38:28 -0600
Subject: [Wrf-users] WRFDA negative height problem
Message-ID: <2A271497-94B7-458F-9660-48479A2C70B1@noaa.gov>

I am attempting to run WRFDA, and I have generated a background error  
file, a set of observations, and a first guess from WRF using NAM data  
as initial and boundary conditions.  When I run da_wrfvar.exe, I get  
the following error message in my rsl.error.*:

   Ntasks in X            2, ntasks in Y            3
   *************************************
   Parent domain
   ids,ide,jds,jde            1         266           1         172
   ims,ime,jms,jme          127         271          -4          64
   ips,ipe,jps,jpe          134         266           1          57
   *************************************
  DYNAMICS OPTION: Eulerian Mass Coordinate
     alloc_space_field: domain            1,              852723024  
bytes allocat
  ed
  WRF TILE   1 IS    134 IE    265 JS      1 JE     57
  WRF NUMBER OF TILES =   1
  ---------------------------- FATAL ERROR -----------------------
  Fatal error in file: <A HREF="http://www.mmm.ucar.edu/people/wrfhelp/wrfvar/cod
  e/trunk/da_transfer_xatowrf.html">da_transfer_xatowrf.inc</a>   
LINE:     442
  Negative height found
     222    22 ht =      -1.19 terr =        7.11
  ----------------------------------------------------------------

Can you help me to understand what might be going wrong here?  I'm  
certain that I've set something wrong, but I don't know what.  I  
copied my WRF namelist over to my WRFDA namelist, so I know the  
settings should match.  For completeness, here's the rsl.out.* file:

***  VARIATIONAL ANALYSIS ***
   Ntasks in X            2, ntasks in Y            3
   *************************************
   Parent domain
   ids,ide,jds,jde            1         266           1         172
   ims,ime,jms,jme          127         271          -4          64
   ips,ipe,jps,jpe          134         266           1          57
   *************************************
  DYNAMICS OPTION: Eulerian Mass Coordinate
     alloc_space_field: domain            1,              852723024  
bytes allocat
  ed
  WRF TILE   1 IS    134 IE    265 JS      1 JE     57
  WRF NUMBER OF TILES =   1
Set up observations (ob)

Using ASCII format observation input

  scan obs ascii
  end scan obs ascii
Observation summary
    ob time  1
       sound                 79 global,      13 local
       synop                961 global,     114 local
       pilot                  0 global,       0 local
       satem                  0 global,       0 local
       geoamv                 0 global,       0 local
       polaramv               0 global,       0 local
       airep               1603 global,     369 local
       gpspw                  0 global,       0 local
       gpsrf                  0 global,       0 local
       metar                  0 global,       0 local
       ships                  0 global,       0 local
       ssmi_rv                0 global,       0 local
       ssmi_tb                0 global,       0 local
       ssmt1                  0 global,       0 local
       ssmt2                  0 global,       0 local
       qscat                  0 global,       0 local
       profiler               0 global,       0 local
       buoy                   0 global,       0 local
       bogus                  0 global,       0 local
       pseudo                 0 global,       0 local
       radar                  0 global,       0 local
       radiance               0 global,       0 local
       airs retrieval         0 global,       0 local
       sonde_sfc             79 global,      13 local
       mtgirs                 0 global,       0 local
       tamdar                 0 global,       0 local

Set up background errors for regional application for cv_options =   5

    Using the averaged regression coefficients for unbalanced part

    WRF-Var dry control variables are:psi, chi_u, t_u and ps_u
    Humidity control variable is rh

Vertical truncation for psi    =  13(  99.00%)

Vertical truncation for chi_u  =  16(  99.00%)

Vertical truncation for t_u    =  25(  99.00%)

Vertical truncation for rh     =  23(  99.00%)



      >>> Save the variances and scale-lengths in outer-loop 1

    Scaling: var, len, ds:   0.100000E+01   0.100000E+01   0.180000E+05
    Scaling: var, len, ds:   0.100000E+01   0.100000E+01   0.180000E+05
    Scaling: var, len, ds:   0.100000E+01   0.100000E+01   0.180000E+05
    Scaling: var, len, ds:   0.100000E+01   0.100000E+01   0.180000E+05
    Scaling: var, len, ds:   0.100000E+01   0.100000E+01   0.180000E+05
Calculate innovation vector(iv)

Minimize cost function using CG method

    jo_sound                   0.262194959846E+04
    jo%sound_u            0.149525238198E+04
    jo%sound_v            0.756634251656E+03
    jo%sound_t            0.253029644007E+03
    jo%sound_q            0.117033320818E+03
    jo_sonde_sfc          0.000000000000E+00
    jo%sonde_sfc_u        0.000000000000E+00
    jo%sonde_sfc_v        0.000000000000E+00
    jo%sonde_sfc_t        0.000000000000E+00
    jo%sonde_sfc_p        0.000000000000E+00
    jo%sonde_sfc_q        0.000000000000E+00
    jo_synop                   0.636955314734E+08
    jo%synop_u            0.491152971520E+03
    jo%synop_v            0.304559122743E+04
    jo%synop_t            0.829944173431E+07
    jo%synop_p            0.553925320036E+08
    jo%synop_q            0.209912537612E+02
    jo%total            0.637064792883E+08
    jo_sound              0.262194959846E+04
    jo_sonde_sfc          0.000000000000E+00
    jo_geoamv             0.000000000000E+00
    jo_polaramv           0.000000000000E+00
    jo_synop              0.636955314734E+08
    jo_satem              0.000000000000E+00
    jo_pilot              0.000000000000E+00
    jo_airep              0.832586532811E+04
    jo_metar              0.000000000000E+00
    jo_ships              0.000000000000E+00
    jo_gpspw              0.000000000000E+00
    jo_ssmi_tb            0.000000000000E+00
    jo_ssmi_rv            0.000000000000E+00
    jo_ssmt1              0.000000000000E+00
    jo_ssmt2              0.000000000000E+00
    jo_pseudo             0.000000000000E+00
    jo_qscat              0.000000000000E+00
    jo_profiler           0.000000000000E+00
    jo_buoy               0.000000000000E+00
    jo_radar              0.000000000000E+00
    jo_gpsref             0.000000000000E+00
    jo_bogus              0.000000000000E+00
    jo_radiance           0.000000000000E+00
    jo_airsr              0.000000000000E+00
    jo_mtgirs             0.000000000000E+00
    jo_tamdar             0.000000000000E+00
    jo_tamdar_sfc          0.000000000000E+00
Starting outer iteration :   1
Starting cost function:  4.25254199D+08, Gradient=  1.98261367D+05
For this outer iteration gradient target is:        1.98261367D+03
----------------------------------------------------------
Iter    Cost Function         Gradient             Step
   1      1.71179200D+08      8.41493011D+04      1.29275354D-02
   2      9.54624377D+07      4.47172535D+04      2.13855787D-02
   3      7.16577641D+07      3.08483006D+04      2.38090454D-02
   4      5.95942218D+07      1.72014545D+04      2.53537591D-02
   5      5.47628019D+07      1.56966639D+04      3.26568609D-02
   6      5.16598630D+07      9.96024256D+03      2.51876992D-02
   7      4.95550876D+07      8.22891171D+03      4.24322367D-02
   8      4.82312735D+07      6.35948495D+03      3.90995895D-02
   9      4.73919322D+07      5.09046293D+03      4.15073184D-02
  10      4.69090645D+07      4.20757477D+03      3.72686462D-02
  11      4.66196330D+07      3.79322360D+03      3.26973125D-02
  12      4.64207492D+07      2.83758913D+03      2.76447402D-02
  13      4.62677592D+07      2.03484654D+03      3.80009081D-02
  14      4.61558173D+07      1.48366366D+03      5.40703801D-02
----------------------------------------------------------

Inner iteration stopped after   14 iterations

    jo_sound                   0.686012931808E+06
    jo%sound_u            0.122287370327E+06
    jo%sound_v            0.149678539580E+05
    jo%sound_t            0.548725663831E+06
    jo%sound_q            0.320436913736E+02
    jo_sonde_sfc          0.000000000000E+00
    jo%sonde_sfc_u        0.000000000000E+00
    jo%sonde_sfc_v        0.000000000000E+00
    jo%sonde_sfc_t        0.000000000000E+00
    jo%sonde_sfc_p        0.000000000000E+00
    jo%sonde_sfc_q        0.000000000000E+00
    jo_synop                   0.209394523833E+07
    jo%synop_u            0.272392793587E+05
    jo%synop_v            0.115704332054E+05
    jo%synop_t            0.180881916304E+07
    jo%synop_p            0.246310098594E+06
    jo%synop_q            0.626412325805E+01
    jo%total            0.329586223340E+07
    jo_sound              0.686012931808E+06
    jo_sonde_sfc          0.000000000000E+00
    jo_geoamv             0.000000000000E+00
    jo_polaramv           0.000000000000E+00
    jo_synop              0.209394523833E+07
    jo_satem              0.000000000000E+00
    jo_pilot              0.000000000000E+00
    jo_airep              0.515904063267E+06
    jo_metar              0.000000000000E+00
    jo_ships              0.000000000000E+00
    jo_gpspw              0.000000000000E+00
    jo_ssmi_tb            0.000000000000E+00
    jo_ssmi_rv            0.000000000000E+00
    jo_ssmt1              0.000000000000E+00
    jo_ssmt2              0.000000000000E+00
    jo_pseudo             0.000000000000E+00
    jo_qscat              0.000000000000E+00
    jo_profiler           0.000000000000E+00
    jo_buoy               0.000000000000E+00
    jo_radar              0.000000000000E+00
    jo_gpsref             0.000000000000E+00
    jo_bogus              0.000000000000E+00
    jo_radiance           0.000000000000E+00
    jo_airsr              0.000000000000E+00
    jo_mtgirs             0.000000000000E+00
    jo_tamdar             0.000000000000E+00
    jo_tamdar_sfc          0.000000000000E+00
Final:  14 iter, J= 4.61558173D+07, g= 1.48366366D+03
----------------------------------------------------------
  ---------------------------- FATAL ERROR -----------------------
  Fatal error in file: <A HREF="http://www.mmm.ucar.edu/people/wrfhelp/wrfvar/cod
  e/trunk/da_transfer_xatowrf.html">da_transfer_xatowrf.inc</a>   
LINE:     442
  Negative height found
     222    22 ht =      -1.19 terr =        7.11
  ----------------------------------------------------------------
taskid: 1 hostname: 4351-crowell.winstorm.nssl
taskid: 1 hostname: 4351-crowell.winstorm.nssl



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From ahmed4kernel at gmail.com  Fri Dec  2 06:45:52 2011
From: ahmed4kernel at gmail.com (ahmed lasheen)
Date: Fri, 2 Dec 2011 15:45:52 +0200
Subject: [Wrf-users] WRF-NMM compiled without nesting
In-Reply-To: <CANkG+wmy=yg+ubpY0QphPnQWV=3vA6uDfC=AqsxsdJX1aW3CqQ@mail.gmail.com>
References: <CANkG+wmy=yg+ubpY0QphPnQWV=3vA6uDfC=AqsxsdJX1aW3CqQ@mail.gmail.com>
Message-ID: <CANkG+wnxaR3U=Zqtrf1VHaUyS=evrbTJeF1xqQVYQqtp31+Vtg@mail.gmail.com>

Helloi found a solution to my problem it was just the WRF_EM_NEST
settting in the .cshrc waswrong . as i am working with NMM, it is now
working well.thanks
On Thu, Nov 24, 2011 at 1:33 PM, ahmed lasheen <ahmed4kernel at gmail.com> wrote:
> Hello
> i have configured WRF-NMM with basic option, and i make nest and when
> i run the real_nmm.exe , then it works well with no problem but when i
> run wrf.exe i got the following error.
> -------------- FATAL CALLED ---------------
> FATAL CALLED FROM FILE: <stdin> LINE: 38
> WRF-NMM compiled without nesting; set max_dom to 1 in namelist.input
> -------------------------------------------
> any suggestions.
>
> --
> ===============
> Ahmed Lasheen
> Egyptian?Meteorological Authority(EMA)
> Cairo,Egypt
> ===============



-- 
===============
Ahmed Lasheen
Junior?researcher at?Cairo Numerical Weather?Prediction?Center (CNWPC)
Egyptian?Meteorological Authority(EMA)
Cairo,Egypt
===============

From wxtofly at comcast.net  Mon Dec  5 11:04:04 2011
From: wxtofly at comcast.net (wxtofly)
Date: Mon, 05 Dec 2011 10:04:04 -0800
Subject: [Wrf-users] WPS 3.3.1 compilation error
In-Reply-To: <BANLkTim5S0a4+YCfK=0V_Q7y9sE5pZJBcg@mail.gmail.com>
References: <BANLkTim5S0a4+YCfK=0V_Q7y9sE5pZJBcg@mail.gmail.com>
Message-ID: <4EDD0794.10209@comcast.net>

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From moudipascal at yahoo.fr  Tue Dec  6 03:03:32 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Tue, 6 Dec 2011 10:03:32 +0000 (GMT)
Subject: [Wrf-users] Array Division
Message-ID: <1323165812.31317.YahooMailClassic@web29006.mail.ird.yahoo.com>

Dear all,
I recently wanted to divide two WRF variables grid by grid, but i failed doing so.
In fact i want to compute the skill for forecast verification, but i am not sure how to? divide two variables with the same sizes and dimension in an ncl script.

Would someone help to fix this, please

Regards

Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From saji at u-aizu.ac.jp  Mon Dec  5 18:56:30 2011
From: saji at u-aizu.ac.jp (Saji Hameed)
Date: Tue, 6 Dec 2011 10:56:30 +0900
Subject: [Wrf-users] WPS 3.3.1 compilation error
In-Reply-To: <4EDD0794.10209@comcast.net>
References: <BANLkTim5S0a4+YCfK=0V_Q7y9sE5pZJBcg@mail.gmail.com>
	<4EDD0794.10209@comcast.net>
Message-ID: <CABwkKsAkJifnz0EZ=zkAFbfdmysBrrf8BgLAo=ZRqN6GgK_Zfw@mail.gmail.com>

Maybe you have not used the configure script for WPS. You have to run
./configure first and chose compilers etc. It is better if the same
compilers are used!

saji

On Tue, Dec 6, 2011 at 3:04 AM, wxtofly <wxtofly at comcast.net> wrote:

> **
> Having finally managed to get WRFV3.3.1 to compile, I then expected an
> easy time with WPS.
> I used ifort and icc 12.0.3 for the NetCDF and WRF compiles.  No success
> with WPS.
>
> 1) Do I have to use the same compilers for WPS as well?
> Configure defaults to gcc without icc, even when icc is defined in the
> environment.
>
> 2) Do I have to use the same compiler options for WPS that I used for
> netCDF and WRF?  eg  -static
>
> 3) Better yet, does someone have a working recipe for getting these three
> compiled using the intel 12 compiler suite?
> (preferably under a bourne/bash shell)
>
>
> Thanks,
> TJ Olney
> attached is the configure.wrf that compiled successfully.
> _____________________________________________
> Environment that worked for WRF and netCDF
> source /opt/intel/composerxe-2011.3.174/bin/compilervars.sh ia32
> source /opt/intel/composerxe-2011.3.174/bin/compilervars_global.sh ia32
> export CC=icc
> export CXX=icpc
> export F77=ifort
> export FC=ifort
> export F90=ifort
> export CPP='icc -E'
> export CXXCPP='icpc -E'
> export JASPERLIB=/usr/lib
> export JASPERINC=/usr/include/jasper
> export CFLAGS='-O3 -xssse3 -ip -no-prec-div -shared'
> export CXXFLAGS='-O3 -xssse3 -ip -no-prec-div -shared'
> export FFLAGS='-O3 -xssse3 -ip -no-prec-div -shared'
> export CPPFLAGS='-O3 -xssse3 -ip -no-prec-div -shared'
> export FLIBS='-L/usr/local/lib -lnetcdff -lnetcdf -L/usr/lib/mpich2/lib
> -llibfmpich -llibmpichf90 -llibmpichcxx'
> export LIBS='-L/usr/local/lib -lnetcdff -lnetcdf -L/usr/lib/mpich2/lib
> -llibfmpich -llibmpichf90 -llibmpichcxx'
> export CLIBS='-L/usr/local/lib -lnetcdff -lnetcdf -L/usr/lib/mpich2/lib
> -llibfmpich -llibmpichf90 -llibmpichcxx'
> export NETCDF=/usr/local
>
> _______________________________________________
> Wrf-users mailing list
> Wrf-users at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/wrf-users
>
>


-- 

Saji N Hameed,
ARC-ENV, Center for Advanced Information Science and Technology,
University of Aizu, Tsuruga, Ikki-machi,
Aizuwakamatsu-shi, Fukushima 965-8580,
Japan

Tel: +81242 37-2736
Fax:+81242 37-2760
 email: saji at u-aizu.ac.jp
 url: http://www.u-aizu.ac.jp
 bib: http://www.researcherid.com/rid/B-9188-2009
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From wxtofly at comcast.net  Mon Dec  5 21:54:28 2011
From: wxtofly at comcast.net (wxtofly)
Date: Mon, 05 Dec 2011 20:54:28 -0800
Subject: [Wrf-users] WPS 3.3.1 compilation error
In-Reply-To: <CABwkKsAkJifnz0EZ=zkAFbfdmysBrrf8BgLAo=ZRqN6GgK_Zfw@mail.gmail.com>
References: <BANLkTim5S0a4+YCfK=0V_Q7y9sE5pZJBcg@mail.gmail.com>	<4EDD0794.10209@comcast.net>
	<CABwkKsAkJifnz0EZ=zkAFbfdmysBrrf8BgLAo=ZRqN6GgK_Zfw@mail.gmail.com>
Message-ID: <4EDDA004.3090205@comcast.net>

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From wxtofly at comcast.net  Wed Dec  7 17:16:38 2011
From: wxtofly at comcast.net (wxtofly)
Date: Wed, 07 Dec 2011 16:16:38 -0800
Subject: [Wrf-users] WPS 3.3.1 OK,  but no jasper  no  png
In-Reply-To: <1323165812.31317.YahooMailClassic@web29006.mail.ird.yahoo.com>
References: <1323165812.31317.YahooMailClassic@web29006.mail.ird.yahoo.com>
Message-ID: <4EE001E6.9020300@comcast.net>

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From wxtofly at comcast.net  Wed Dec 14 00:32:50 2011
From: wxtofly at comcast.net (wxtofly)
Date: Tue, 13 Dec 2011 23:32:50 -0800
Subject: [Wrf-users] Resolved: Re:  WPS 3.3.1 OK,  but no jasper  no  png
In-Reply-To: <20111212074214.GB22522@giotto.bmtargoss.org>
References: <1323165812.31317.YahooMailClassic@web29006.mail.ird.yahoo.com>
	<4EE001E6.9020300@comcast.net>
	<20111212074214.GB22522@giotto.bmtargoss.org>
Message-ID: <4EE85122.70302@comcast.net>

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From bbrashers at environcorp.com  Wed Dec 14 09:59:27 2011
From: bbrashers at environcorp.com (Bart Brashers)
Date: Wed, 14 Dec 2011 16:59:27 +0000
Subject: [Wrf-users] Resolved: Re:  WPS 3.3.1 OK, but no jasper  no  png
In-Reply-To: <4EE85122.70302@comcast.net>
References: <1323165812.31317.YahooMailClassic@web29006.mail.ird.yahoo.com>
	<4EE001E6.9020300@comcast.net>	<20111212074214.GB22522@giotto.bmtargoss.org>
	<4EE85122.70302@comcast.net>
Message-ID: <020B89C32F08C64FAACB3715A54952153ECFB594@wcexs1>

Have you tried the versions of jasper and libpng that are in the EPEL repository?  It should be as simple as enabling EPEL, and doing a

# yum install jasper-libs libpng libpng-devel

I believe I compiled WPS/WRF using these versions, on CentOS x86_64.

Bart

From: wrf-users-bounces at ucar.edu [mailto:wrf-users-bounces at ucar.edu] On Behalf Of wxtofly
Sent: Tuesday, December 13, 2011 11:33 PM
To: Hein Zelle; WRF Users; WRF DA; WRF Users
Subject: [Wrf-users] Resolved: Re: WPS 3.3.1 OK, but no jasper no png

I reinstalled all fedora libz libpng and jasper.
I got this:
./ngl/libg2_4.a(dec_png.o): In function `dec_png_':
dec_png.c:(.text+0x148): undefined reference to `png_set_longjmp_fn'


I finally compiled  and installed  those three libraries (http://www.mmm.ucar.edu/wrf_tmp/WRF_OnLineTutorial/SOURCE_DATA/libs_for_wps.tar)
to my WPS working directory and adjusted all the configure paths to them.
I then succeeded in compiling ungrib with libpng and jasper.


It seems that the new libpng libraries  ( >1.4 )are not compatible with WPSV3.3.1 as distributed.

A patch by someone who knows what they are doing along the lines of the one described at:

http://stackoverflow.com/questions/5190554/unresolved-external-png-set-longjmp-fn-in-libpng

would be a welcome thing.

TJ Olney

________________________________
This message contains information that may be confidential, privileged or otherwise protected by law from disclosure. It is intended for the exclusive use of the Addressee(s). Unless you are the addressee or authorized agent of the addressee, you may not review, copy, distribute or disclose to anyone the message or any information contained within. If you have received this message in error, please contact the sender by electronic reply to email at environcorp.com and immediately delete all copies of the message.
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From ardie_coal at yahoo.com  Sun Dec 18 03:16:30 2011
From: ardie_coal at yahoo.com (Ahmad Wan)
Date: Sun, 18 Dec 2011 02:16:30 -0800 (PST)
Subject: [Wrf-users] wrf error could not find level above ground
Message-ID: <1324203390.14343.YahooMailNeo@web111208.mail.gq1.yahoo.com>

Hi,
Thank you for taking the time to read this,
but I am stuck with the same error for some time now:
....
....
warning: water vapor pressure exceeds total pressure
warning: water vapor pressure exceeds total pressure
warning: water vapor pressure exceeds total pressure
warning: water vapor pressure exceeds total pressure
....
??? ERROR: could not find level above ground

which is produced at ./real.exe

At first, I thought it was a problem with lack of pressure levels in input data. I have tried increasing it to no success.
Does unrealistic values produce this error?
For your information, I created my own intermediate data, & successfully ran the geogrid, metgrid programs...

Thank you
(Wan Ahmad Ardie)
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From sean.crowell at noaa.gov  Mon Dec 19 09:51:35 2011
From: sean.crowell at noaa.gov (Sean Crowell)
Date: Mon, 19 Dec 2011 10:51:35 -0600
Subject: [Wrf-users] Pseudo-Single Obs Test in WRFDA
Message-ID: <896EB935-C4B8-4E8A-B3C9-282BCA236B96@noaa.gov>

I am using WRFDA and WRF-ARW version 3.3.1, and have generated a  
background error covariance file be.dat for my specific season and  
model grid, and am trying to determine if I need to tune, etc, because  
the answers that I'm getting are quite unreasonable.  For this  
purpose, I'm running a single observation test, and seem to get  
reasonable values for wind observations.  However, when I try to put  
in a temperature observation, I don't get any increment.  The  
difference between the first guess and the analysis is zero.  Any ideas?

Sean

From scrowell at ou.edu  Mon Dec 19 10:18:03 2011
From: scrowell at ou.edu (Sean Crowell)
Date: Mon, 19 Dec 2011 11:18:03 -0600
Subject: [Wrf-users] Pseudo-Single Obs Test in WRFDA
In-Reply-To: <896EB935-C4B8-4E8A-B3C9-282BCA236B96@noaa.gov>
References: <896EB935-C4B8-4E8A-B3C9-282BCA236B96@noaa.gov>
Message-ID: <F4C6D2E3-CD65-47D8-B3BA-23E677496D85@ou.edu>

I discovered the magnitude was too small, and now I am getting nonzero  
increments.  However, the corresponding increment in U and V for a 4-8  
K increment in T is huge (like 100m/s).  Not sure how to proceed.

On Dec 19, 2011, at 10:51 AM, Sean Crowell wrote:

> I am using WRFDA and WRF-ARW version 3.3.1, and have generated a  
> background error covariance file be.dat for my specific season and  
> model grid, and am trying to determine if I need to tune, etc,  
> because the answers that I'm getting are quite unreasonable.  For  
> this purpose, I'm running a single observation test, and seem to get  
> reasonable values for wind observations.  However, when I try to put  
> in a temperature observation, I don't get any increment.  The  
> difference between the first guess and the analysis is zero.  Any  
> ideas?
>
> Sean


From jpad0001 at um.edu.mt  Thu Dec 29 05:02:41 2011
From: jpad0001 at um.edu.mt (Jason Padovani Ginies)
Date: Thu, 29 Dec 2011 13:02:41 +0100
Subject: [Wrf-users] Nests in WRF Portal
Message-ID: <CAHJ3cyP4cHjM659psbAgsd8sVP8Mnd4PtNf6UweXoL6EsLOKzA@mail.gmail.com>

Dear wrf-users,

I am having problems running a simulation with 4 nests. When I specify the
nests in WRF Portal and move on to the namelist, the final column of values
for the last nest are not filled out and if I try filling them out myself,
the simulation fails at initialization.

Has anyone else encountered this problem before or is it perhaps a
limitation of WRF portal?

Kind regards,

Jason
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From moudipascal at yahoo.fr  Wed Dec 28 07:44:57 2011
From: moudipascal at yahoo.fr (moudi pascal)
Date: Wed, 28 Dec 2011 14:44:57 +0000 (GMT)
Subject: [Wrf-users] WRFVAR Verification packages
Message-ID: <1325083497.21353.YahooMailClassic@web132205.mail.ird.yahoo.com>

Dear sir,
I am Cameroonian and i deal with WRFVAR as far as my ongoing Ph.D. is concerned.
I installed and run WRF and WRFVAR successfully.
I use GFS for initialization.
I use Prepbufr (ob.bufr and gpsro.bufr) and radiances data (airs.bufr, hirs.bufr ...) for the WRFVAR scheme (3D-Var).
I
 would like to use the provided verification packages in ../var/scripts 
(da_run_suite_verif_obs.ksh and da_verif_obs_plot.ksh). 
I have read the document WRFDA_tools.pdf, but i am unable to run it successfully.
since in don't have the ob.ascii file in my directories,
I would like? you to help me step by step to fill? files da_run_suite_verif_obs.ksh and da_verif_obs_plot.ksh.
I want to run verification against observation.

Please, help me.


Pascal MOUDI IGRI

Ph-D Student 
Laboratory of Environmental Modeling and Atmospheric Physics (LEMAP)
Department of Physics
Faculty of Science
University of Yaounde I, Cameroon 
National Advanced Training School for Technical Education,
Electricity Engineering, Douala

Tel:+237 75 32 58 52
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From sam.hawkins at vattenfall.com  Fri Dec 30 05:26:26 2011
From: sam.hawkins at vattenfall.com (sam.hawkins at vattenfall.com)
Date: Fri, 30 Dec 2011 13:26:26 +0100
Subject: [Wrf-users] Intermittent MPI problem
Message-ID: <25EBE9C717C6244A97CC1E31BF688EFB032FD1AB27@SMMABOX0744.eur.corp.vattenfall.com>

Dear WRF users,

I'm experiencing an intermittent problem running WRF V3.3.1, compiled with gcc  and using mvapich2 V1.2. Sometimes a simulation immediately aborts with an error message:

[14] Abort: Control shouldn't reach here in prototype, header 184
 at line 276 in file ibv_recv.c

This error always appears in an rsl.error file other than rsl.error.0000. Sometime, with the same settings, the simulation runs fine. Any ideas?

Sam.

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