[Wrf-users] Problem with real.exe

Tue Oct 19 19:01:45 MDT 2010

Hi All,

I am trying to run WRF.3.2. in a Linux x86_64 machine with PGI  
compiler with gcc (smpar). I have successfully finish geogrid.exe,  
metgrid.exe and ungrib.exe. While I have tryed to run real.exe for 3  
domain I get the only one wrfinput_d01 and wrfbdy_d01. That is  
wrfinput_d02 wrfinput_d03 did not generate. When I checked the log  
file I found the following error message

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.

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module_io.F: in wrf_read_field
input_wrf.F reading 3d real st Status = 0
input_wrf.F reading 3d real sm
date 2008-06-02_00:00:00
ds 1 1 1
de 324 4 249
ps 1 1 1
pe 324 4 249
ms -4 1 -4
me 330 4 255
module_io.F: in wrf_read_field
input_wrf.F reading 3d real sm Status = 0
input_wrf.F reading 3d real sw
date 2008-06-02_00:00:00
ds 1 1 1
de 324 4 249
ps 1 1 1
pe 324 4 249
ms -4 1 -4
me 330 4 255
module_io.F: in wrf_read_field
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2712 Varname SW
input_wrf.F reading 3d real sw Status = -1021
input_wrf.F reading 3d real soilt
date 2008-06-02_00:00:00
ds 1 1 1
de 324 4 249
ps 1 1 1
pe 324 4 249
ms -4 1 -4
me 330 4 255
module_io.F: in wrf_read_field
input_wrf.F reading 3d real sm Status = 0
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2712 Varname SOILT
input_wrf.F reading 3d real soilt Status = -1021
input_wrf.F reading 3d real sw
date 2008-06-02_00:00:00
ds 1 1 1
de 324 4 249
input_wrf.F reading 3d real soilm
date 2008-06-02_00:00:00
ds 1 1 1
de 324 4 249
ps 1 1 1
pe 324 4 249
ms -4 1 -4
me 330 4 255
module_io.F: in wrf_read_field
ps 1 1 1
pe 324 4 249
ms -4 1 -4
me 330 4 255

======================================================================

#### Architecture specific settings ####

# Settings for Linux x86_64, PGI compiler with gcc (smpar)
#
DMPARALLEL = 1
OMPCPP = -D_OPENMP
OMP = -mp -Minfo=mp -Mrecursive
OMPCC = -mp
SFC = pgf90
SCC = gcc
CCOMP = pgcc
DM_FC = mpif90 -f90=$(SFC)
DM_CC = mpicc -cc=$(SCC)
FC = $(SFC)
CC = $(SCC) -DFSEEKO64_OK
LD = $(FC)
RWORDSIZE = $(NATIVE_RWORDSIZE)
PROMOTION = -r$(RWORDSIZE) -i4
ARCH_LOCAL = -DNONSTANDARD_SYSTEM_SUBR
CFLAGS_LOCAL = -w -O3
LDFLAGS_LOCAL =
CPLUSPLUSLIB =
ESMF_LDFLAG = $(CPLUSPLUSLIB)
FCOPTIM = -fastsse -Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8  
-Mfprelaxed # -Minfo=all =Mneginfo=all
FCREDUCEDOPT = $(FCOPTIM)
FCNOOPT = -O0
FCDEBUG = # -g $(FCNOOPT)
FORMAT_FIXED = -Mfixed
FORMAT_FREE = -Mfree
FCSUFFIX =
BYTESWAPIO = -byteswapio
FCBASEOPTS_NO_G = -w $(FORMAT_FREE) $(BYTESWAPIO) $(OMP)
FCBASEOPTS = $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG = -module $(WRF_SRC_ROOT_DIR)/main
TRADFLAG = -traditional
CPP = /lib/cpp -C -P
AR = ar
ARFLAGS = ru
M4 = m4 -B 14000
RANLIB = ranlib
CC_TOOLS = $(SCC)

========================================================================
and the following namelist.input settings:
========================================================================

&time_control
run_days = 29,
run_hours = 0,
run_minutes = 0,
run_seconds = 0,
start_year = 2008, 2008, 2008,
start_month = 06, 06, 06,
start_day = 02, 02, 02,
start_hour = 00, 00, 00,
start_minute = 00, 00, 00,
start_second = 00, 00, 00,
end_year = 2008, 2008, 2008,
end_month = 07, 07, 07,
end_day = 02, 02, 02,
end_hour = 00, 00, 00,
end_minute = 00, 00, 00,
end_second = 00, 00, 00,
interval_seconds = 10800
input_from_file = .true.,.true.,.true.,
history_interval = 180, 180, 180,
frames_per_outfile = 1000, 1000, 1000,
restart = .false.,
restart_interval = 5000,
io_form_history = 2
io_form_restart = 2
io_form_input = 2
io_form_boundary = 2
debug_level = 1000
/

&domains
time_step = 48,
time_step_fract_num = 0,
time_step_fract_den = 1,
max_dom = 3,
e_we = 325, 202, 181,
e_sn = 250, 202, 271,
e_vert = 28, 28, 28,
p_top_requested = 10000,
num_metgrid_levels = 30
num_metgrid_soil_levels = 4,
dx = 8000, 2666.666, 888.888,
dy = 8000, 2666.666, 888.888,
grid_id = 1, 2, 3,
parent_id = 1, 1, 2,
i_parent_start = 1, 124, 76,
j_parent_start = 1, 106, 42,
parent_grid_ratio = 1, 3, 3,
parent_time_step_ratio = 1, 3, 3,
feedback = 1,
smooth_option = 2
/

&physics
mp_physics = 6, 6, 6,
ra_lw_physics = 1, 1, 1,
ra_sw_physics = 1, 1, 1,
radt = 8, 8, 8,
sf_sfclay_physics = 1, 1, 1,
sf_surface_physics = 2, 2, 2,
bl_pbl_physics = 1, 1, 1,
bldt = 0, 0, 0,
cu_physics = 1, 0, 0,
cudt = 5, 5, 5,
isfflx = 1,
ifsnow = 0,
icloud = 1,
surface_input_source = 1,
num_soil_layers = 4,
sf_urban_physics = 0,
maxiens = 1,
maxens = 3,
maxens2 = 3,
maxens3 = 16,
ensdim = 144,
/

&dynamics
w_damping = 0,
diff_opt = 1,
km_opt = 4,
diff_6th_opt = 0, 0, 0,
diff_6th_factor = 0.12, 0.12, 0.12,
base_temp = 290.
damp_opt = 0,
zdamp = 5000., 5000., 5000.,
dampcoef = 0.2, 0.2, 0.2
khdif = 0, 0, 0,
kvdif = 0, 0, 0,
non_hydrostatic = .true., .true., .true.,
moist_adv_opt = 1, 1, 1,
scalar_adv_opt = 1, 1, 1,
/

&bdy_control
spec_bdy_width = 5,
spec_zone = 1,
relax_zone = 4,
specified = .true., .false.,.false.,
nested = .false., .true., .true.,
/

&grib2
/

&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/

I have never faced such an error message before while I have used  
3.1.1 or 3.1 version. I am using netcdf-4.1.1-pgf. Could anyone please  
help me.

Thanks in advance
Kamal
University of Waterloo
Canada