[Wrf-users] WRF Compilation
Mario Rindlisbacher
rindlisbacher at meteotest.ch
Mon May 7 00:35:56 MDT 2007
Hello list,
we are trying to compile the WRFV2.1.2. We are workingon a Linux Debian
distribution 2.6.8 and the PGI Compiler Version 6.2. We installed the
mpich-1.2.7 and netcdf-3.6.1. The installation of the SI works fine and
we get all the executables. But the compilation of the real_nmm core
doesnt work fine and we are pretty clueless why. I attach our
configure.wrf and the compile.log, maybe you have us an idea where to go
next.
Help would be very much appreciated!
Regards, Mario
--
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Mario Rindlisbacher email: mailto:rindlisbacher at meteotest.ch
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Fabrikstrasse 14 fax: ++41 31 307 26 10
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------------------------------------------------------------------------
.../build/compile_rules.mk:32: warning: overriding commands for target `.c.o'
Makefile:95: warning: ignoring old commands for target `.c.o'
.../build/compile_rules.mk:32: warning: overriding commands for target `.c.o'
Makefile:95: warning: ignoring old commands for target `.c.o'
.../build/compile_rules.mk:32: warning: overriding commands for target `.c.o'
Makefile:56: warning: ignoring old commands for target `.c.o'
.../build/compile_rules.mk:32: warning: overriding commands for target `.c.o'
Makefile:56: warning: ignoring old commands for target `.c.o'
ar: creating libesmf_time.a
ar: creating ../main/libwrflib.a
/usr/bin/ld: cannot find -lmpichf90
make[2]: [diffwrf] Error 2 (ignored)
/usr/bin/ld: cannot find -lmpichf90nc
make[1]: [em_wrf] Error 2 (ignored)
/usr/bin/ld: cannot find -lmpichf90nc
make[1]: [real_nmm] Error 2 (ignored)
------------------------------------------------------------------------
# configure.wrf
#
# This file was automatically generated by the configure script in the
# top level directory. You may make changes to the settings in this
# file but be aware they will be overwritten each time you run configure.
# Ordinarily, it is necessary to run configure once, when the code is
# first installed.
#
# To permanently change options, change the settings for your platform
# in the file arch/configure.defaults then rerun configure.
#
SHELL = /bin/sh
DEVTOP = `pwd`
LIBINCLUDE = .
.SUFFIXES: .F .i .o .f .c
#### Get core settings from environment (set in compile script)
#### Note to add a core, this has to be added to.
COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
-DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
-DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
-DEXP_CORE=$(WRF_EXP_CORE)
#### Single location for defining total number of domains. You need
#### at least 1 + 2*(number of total nests). For example, 1 coarse
#### grid + three fine grids = 1 + 2(3) = 7, so MAX_DOMAINS=7.
MAX_DOMAINS = 21
#### DM buffer length for the configuration flags.
CONFIG_BUF_LEN = 8192
##############################################################################
#### The settings in this section are defaults that may be overridden by the
#### architecture-specific settings in the next section.
##############################################################################
##############################################################################
#### NOTE: Do not modify these default values here. To override these
#### values, make changes after "Architecture specific settings".
##############################################################################
#### Native size (in bytes) of Fortran REAL data type on this architecture ####
#### Note: to change real wordsize (for example, to promote REALs from
#### 4-byte to 8-byte), modify the definition of RWORDSIZE in the
#### section following "Architecture specific settings". Do not
#### change NATIVE_RWORDSIZE as is it architecture-specific.
NATIVE_RWORDSIZE = 4
#### Default sed command and script for Fortran source files ####
SED_FTN = sed -f ../arch/standard.sed
#### Default ESMF switch and dependences for embedded ESMF time manager ####
ESMFCOUPLING = 0
ESMF_MOD_DEPENDENCE = ../external/esmf_time_f90/module_utility.o
##############################################################################
#### Architecture specific settings ####
# Settings for PC Linux i486 i586 i686, PGI compiler DM-Parallel (RSL, MPICH, Allows nesting)
#
# Notes: for experimental implementation of moving nests, add -DMOVE_NESTS to ARCHFLAGS
# for experimental implementation of vortex tracking nests, add -DMOVE_NESTS -DVORTEX_CENTER to ARCHFLAGS
#
DMPARALLEL = 1
MAX_PROC = 1024
FC = mpif90 -f90=pgf90
LD = mpif90 -f90=pgf90
CC = mpicc -cc=gcc -DMPI2_SUPPORT
SCC = gcc
SFC = pgf90
RWORDSIZE = $(NATIVE_RWORDSIZE)
PROMOTION = -r$(RWORDSIZE) -i4
CFLAGS = -DDM_PARALLEL -DWRF_RSL_IO \
-DMAXDOM_MAKE=$(MAX_DOMAINS) -DMAXPROC_MAKE=$(MAX_PROC) -I../external/RSL/RSL
FCOPTIM = -O2 # -fast
FCDEBUG = #-g
#FCBASEOPTS = -w -byteswapio -Ktrap=fp -Mfree -tp p6 $(FCDEBUG)
FCBASEOPTS = -w -byteswapio -Mfree -tp p6 $(FCDEBUG) # -Mlfs
FCFLAGS = $(FCOPTIM) $(FCBASEOPTS)
ARCHFLAGS = -DDEREF_KLUDGE -DIO_DEREF_KLUDGE -DGRIB1 -DINTIO -DWRF_RSL_IO -DRSL -DDM_PARALLEL \
-DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=4 -DNETCDF \
-DTRIEDNTRUE \
-DLIMIT_ARGS
INCLUDE_MODULES = -module ../main -I../external/io_netcdf -I../external/io_int -I../external/esmf_time_f90 \
-I../external -I../frame -I../share -I../phys -I../chem -I../inc
PERL = perl
REGISTRY = Registry
LIB = -L../external/io_netcdf -lwrfio_nf -L/home/wrf/netcdf-3.6.1/lib -lnetcdf -L../external/RSL/RSL -lrsl \
-L../external/io_grib1 -lio_grib1 \
-L../external/io_int -lwrfio_int \
../frame/module_internal_header_util.o ../frame/pack_utils.o -L../external/esmf_time_f90 -lesmf_time
LDFLAGS = -byteswapio $(FCFLAGS)
ENVCOMPDEFS =
WRF_CHEM = 0
CPP = /lib/cpp -C -P -traditional
POUND_DEF = -DNO_RRTM_PHYSICS -traditional $(COREDEFS) -DNONSTANDARD_SYSTEM -DF90_STANDALONE -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) -DMAX_DOMAINS_F=$(MAX_DOMAINS)
CPPFLAGS = -I$(LIBINCLUDE) -C -P $(ARCHFLAGS) -I../external/RSL/RSL -C -P `cat ../inc/dm_comm_cpp_flags` $(ENVCOMPDEFS) $(POUND_DEF)
AR = ar ru
M4 = m4
RANLIB = ranlib
NETCDFPATH = /home/wrf/netcdf-3.6.1
CC_TOOLS = cc
externals : wrf_ioapi_includes wrfio_nf wrfio_grib1 ../external/RSL/RSL/librsl.a wrfio_int gen_comms.c module_dm.F esmf_time
gen_comms.c : ../external/RSL/gen_comms.c
( /bin/cp ../tools/gen_comms_warning ../tools/gen_comms.c ; \
cat ../external/RSL/gen_comms.c >> ../tools/gen_comms.c )
module_dm.F : ../external/RSL/module_dm.F
( /bin/cp module_dm_warning module_dm.F ; cat ../external/RSL/module_dm.F >> module_dm.F )
wrfio_nf :
( cd ../external/io_netcdf ; \
make NETCDFPATH=/home/wrf/netcdf-3.6.1 RANLIB="$(RANLIB)" CPP="$(CPP)" FC="$(FC) $(PROMOTION) $(FCFLAGS) -w" TRADFLAG="-traditional" )
wrfio_grib1 :
( cd ../external/io_grib1 ; \
make CC="$(SCC)" CFLAGS="$(CFLAGS)" RANLIB="$(RANLIB)" CPP="$(CPP)" FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) -w" TRADFLAG="-traditional" )
wrfio_int :
( cd ../external/io_int ; \
make CC="$(CC)" RANLIB="$(RANLIB)" CPP="$(CPP)" SFC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) -w" TRADFLAG="-traditional" all )
esmf_time :
( cd ../external/esmf_time_f90 ; \
make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" CPP="$(CPP) -I../../inc -I. $(POUND_DEF)" )
.../external/RSL/RSL/librsl.a :
( cd ../external/RSL/RSL ; make CC="$(CC)" FC="$(FC) $(PROMOTION) -byteswapio" MAX_DOMAINS=$(MAX_DOMAINS) MAX_PROC=$(MAX_PROC) LEARN_BCAST=-DLEARN_BCAST linux )
# compile these without high optimization to speed compile
solve_interface.o : solve_interface.F
shift_domain_em.o : shift_domain_em.F
module_io_mm5.o : module_io_mm5.F
module_si_io.o : module_si_io.F
module_io_wrf.o : module_io_wrf.F
module_domain.o : module_domain.F
module_start.o : module_start.F
module_initialize.o : module_initialize.F
module_initialize_b_wave.o : module_initialize_b_wave.F
module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
module_initialize_real.o : module_initialize_real.F
module_dm.o : module_dm.F
start_domain.o : start_domain.F
mediation_integrate.o : mediation_integrate.F
module_configure.o : module_configure.F
solve_interface.o \
shift_domain_em.o \
module_io_mm5.o module_si_io.o module_io_wrf.o module_domain.o \
module_start.o module_initialize.o module_initialize_b_wave.o \
module_initialize_hill2d_x.o module_initialize_quarter_ss.o \
module_initialize_squall2d_x.o module_initialize_squall2d_y.o \
module_configure.o \
mediation_integrate.o \
module_initialize_real.o module_dm.o start_domain.o :
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I../inc $(CPPFLAGS) $*.b > $*.f
$(RM) $*.b
$(FC) -c $(PROMOTION) $(FCBASEOPTS) $(MODULE_DIRS) $*.f
# if [ ! -e $@ ] ; then \
# sleep 10 ; $(FC) -c $(PROMOTION) $(FCBASEOPTS) $(MODULE_DIRS) $*.f ; \
# fi
# if [ ! -e $@ ] ; then \
# sleep 30 ; $(FC) -c $(PROMOTION) $(FCBASEOPTS) $(MODULE_DIRS) $*.f ; \
# fi
# if [ ! -e $@ ] ; then \
# sleep 300 ; $(FC) -c $(PROMOTION) $(FCBASEOPTS) $(MODULE_DIRS) $*.f ; \
# fi
###########################################################
#
# Macros, these should be generic for all machines
LN = ln -sf
MAKE = make -i -r
RM = rm -f
# There is probably no reason to modify these rules
wrf_ioapi_includes :
( cd ../external/ioapi_share ; \
$(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" )
.F.i:
$(RM) $@
$(CPP) -I../inc $(CPPFLAGS) $*.F > $@
mv $*.i $(DEVTOP)/pick/$*.f
cp $*.F $(DEVTOP)/pick
.F.o:
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I../inc $(CPPFLAGS) $*.b > $*.f
$(RM) $*.b
$(FC) -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $*.f
# if [ ! -e $@ ] ; then \
# sleep 10 ; $(FC) -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $*.f ; \
# fi
# if [ ! -e $@ ] ; then \
# sleep 10 ; $(FC) -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $*.f ; \
# fi
.F.f:
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I../inc $(CPPFLAGS) $*.b > $@
$(RM) $*.b
.f.o:
$(RM) $@
$(FC) -c $(FCFLAGS) $(PROMOTION) $*.f
# if [ ! -e $@ ] ; then \
# sleep 10 ; $(FC) -c $(FCFLAGS) $(PROMOTION) $*.f ; \
# fi
# if [ ! -e $@ ] ; then \
# sleep 10 ; $(FC) -c $(FCFLAGS) $(PROMOTION) $*.f ; \
# fi
.c.o:
$(RM) $@
$(CC) -c $(CFLAGS) $*.c
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