[pyngl-talk] missing shared library for PyNIO
Marcia Branstetter
branstetterm at ornl.gov
Wed Feb 8 13:31:22 MST 2017
Hi Kevin,
Here is the output:
[mbranst at or-condo-login02 ~]$ conda list -n pyn_test
# packages in environment at /home/mbranst/miniconda2/envs/pyn_test:
#
bzip2 1.0.6 3
ca-certificates 2016.9.26 0 conda-forge
cairo 1.14.6 0 conda-forge
certifi 2016.2.28 py27_0
curl 7.52.1 0
expat 2.1.0 0
fontconfig 2.11.1 6 conda-forge
freetype 2.6.3 1 conda-forge
freexl 1.0.2 1 conda-forge
g2clib 1.6.0 2 conda-forge
gdal 2.1.3 np111py27_1 conda-forge
geos 3.5.0 0
giflib 5.1.4 0 conda-forge
gsl 2.2.1 0
hdf4 4.2.11 0
hdf5 1.8.17 1
hdfeos2 2.19.1 7 conda-forge
hdfeos5 5.1.15 6 conda-forge
icu 56.1 4 conda-forge
jasper 1.900.1 4 conda-forge
jbig 2.1 0
jpeg 9b 0
json-c 0.12 0 conda-forge
kealib 1.4.6 0
libdap4 3.18.3 2 conda-forge
libgcc 5.2.0 0
libgfortran 3.0.0 1
libiconv 1.14 0
libnetcdf 4.4.1.1 2 conda-forge
libpng 1.6.28 0 conda-forge
libpq 9.5.4 0
libspatialite 4.3.0a 14 conda-forge
libtiff 4.0.6 3
libxml2 2.9.4 0
mkl 2017.0.1 0
ncl 6.3.0 2 conda-forge
ncurses 5.9 10
numpy 1.11.3 py27_0
openjpeg 2.1.2 2 conda-forge
openssl 1.0.2k 0
pcre 8.39 1
pip 9.0.1 py27_1
pixman 0.34.0 0
pkg-config 0.28 1
proj4 4.9.3 2 conda-forge
pyngl 1.5.0_beta20161122 np111py27_1
conda-forge
pynio 1.5.0_beta20160623 np111py27_14
conda-forge
python 2.7.13 0
readline 6.2 2
setuptools 27.2.0 py27_0
sqlite 3.13.0 0
tk 8.5.18 0
udunits2 2.2.23 0 conda-forge
util-linux 2.21 0
wheel 0.29.0 py27_0
xerces-c 3.1.4 0
xz 5.2.2 1
zlib 1.2.8 3
Thanks,
Marcia
On Tue, 7 Feb 2017, Kevin Hallock wrote:
> Hi Marcia,
>
> Could you please run “conda list -n pyn_test” and reply with the output?
>
> The conda-forge project has been rebuilding packages the past few days to address issues with libicu like what you’ve experienced.
>
> Thanks,
> Kevin
>
>> On Feb 7, 2017, at 1:23 PM, Marcia Branstetter <branstetterm at ornl.gov> wrote:
>>
>> Hi,
>>
>> I installed PyNIO and PyNGL on a computer:
>> Linux 3.10.0-327.4.4.el7.x86_64 #1 SMP Tue Jan 5 16:07:00 UTC 2016 x86_64
>> x86_64 x86_64 GNU/Linux
>> today, using
>> conda create --name pyn_test --channel conda-forge pynio
>> pyngl
>>
>> but after I activate pyn_test, go into python and then try to import Nio,
>> I get an error message:
>>>>> import Nio
>> Traceback (most recent call last):
>> File "<stdin>", line 1, in <module>
>> File
>> "/home/mbranst/miniconda2/envs/pyn_test/lib/python2.7/site-packages/PyNIO/Nio.py",
>> line 83, in <module>
>> from nio import *
>> ImportError: libicui18n.so.58: cannot open shared object file: No such
>> file or directory
>>>>> import Ngl
>> Segmentation fault (core dumped)
>>
>> If I import Ngl first, and print the version, I get
>>>>> import Ngl
>>>>> print Ngl.__version__
>> 1.5.0_beta20161122
>>
>> A few weeks ago, I installed PyNIO and PyNGL in the same way on another
>> linux machine, and it's been working fine.
>>
>> I tried installing on a linux virtual machine today and got the same
>> errors.
>>
>> Thanks,
>> Marcia Branstetter
>>
>>
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