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<div>I get the same error using your script, myfile, and ncl code.</div>
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<div>What is it you’re trying to do? There maybe another/better way to do it.</div>
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<div class="">On Apr 22, 2021, at 10:43 PM, Bidyut Bikash Goswami <<a href="mailto:bidyut@yonsei.ac.kr" class="">bidyut@yonsei.ac.kr</a>> wrote:</div>
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<div dir="ltr" class="">Thank you Brian for your suggestion.
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<div class="">But the problem still persists even when I try</div>
<div class="">-------</div>
<div class="">cat myfile| while read mname <br class="">
do<br class="">
ncl myfile.ncl<br class="">
done<br class="">
</div>
<div class="">-------</div>
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<div class="">I am clueless what can go wrong here.</div>
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<div class="">Regards,</div>
<div class="">Bidyut</div>
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<div dir="ltr" class="gmail_attr">On Fri, Apr 23, 2021 at 5:15 AM Brian Thomas <<a href="mailto:brian.thomas@washburn.edu" class="">brian.thomas@washburn.edu</a>> wrote:<br class="">
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<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Not certain, but I think your problem is the quotes around your variable name here:</span></div>
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<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">echo "$mname"</span></div>
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</span></div>
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<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Shouldn't have " " to make it echo out the contents of $mname</span></div>
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<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class=""><br class="">
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<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Date: Thu, 22 Apr 2021 14:26:03 +0900</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">From: Bidyut Bikash Goswami <</span><a href="mailto:bidyut@yonsei.ac.kr" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">bidyut@yonsei.ac.kr</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">></span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">To:<span class=""> </span></span><a href="mailto:ncl-talk@mailman.ucar.edu" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">ncl-talk@mailman.ucar.edu</a><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Subject: [ncl-talk] Running NCL script from shell script</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Message-ID:</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class=""><</span><a href="mailto:CAOxJJSdjyHjprWvM-0C8Y20dp1dtEisfiwYzqRdj+OhOts6PqQ@mail.gmail.com" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">CAOxJJSdjyHjprWvM-0C8Y20dp1dtEisfiwYzqRdj+OhOts6PqQ@mail.gmail.com</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">></span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Content-Type: text/plain; charset="utf-8"</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Hello All,</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">I am trying to run my ncl script from the following shell script:</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">#!/bash/bin</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">for i in {1..2}</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">do</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">echo $i</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">ncl myfile.ncl</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">done</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Runs perfectly fine =></span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">[</span><a href="mailto:bidyut@localhost" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">bidyut@localhost</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">]$
sh<span class=""> </span></span><a href="http://test.sh/" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">test.sh</a><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">1</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Copyright (C) 1995-2017 - All Rights Reserved</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">University Corporation for Atmospheric Research</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">NCAR Command Language Version 6.4.0</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">The use of this software is governed by a License Agreement.</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">See<span class=""> </span></span><a href="http://www.ncl.ucar.edu/" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;color:rgb(0,120,215)" target="_blank" class="">http://www.ncl.ucar.edu/</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class=""><span class=""> </span>for
more details.</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">(0) Hello</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">2</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Copyright (C) 1995-2017 - All Rights Reserved</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">University Corporation for Atmospheric Research</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">NCAR Command Language Version 6.4.0</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">The use of this software is governed by a License Agreement.</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">See<span class=""> </span></span><a href="http://www.ncl.ucar.edu/" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;color:rgb(0,120,215)" target="_blank" class="">http://www.ncl.ucar.edu/</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class=""><span class=""> </span>for
more details.</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">(0) Hello</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">But if I try to run:</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">#!/bash/bin</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">cat myfile| while read mname</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">do</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">echo "$mname"</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">echo "Running the NCL script"</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">ncl myfile.ncl</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">done</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">I get an error=></span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">[</span><a href="mailto:bidyut@localhost" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">bidyut@localhost</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">]$
sh<span class=""> </span></span><a href="http://test1.sh/" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">test1.sh</a><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">name1</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Running the NCL script</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Copyright (C) 1995-2017 - All Rights Reserved</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">University Corporation for Atmospheric Research</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">NCAR Command Language Version 6.4.0</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">The use of this software is governed by a License Agreement.</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">See<span class=""> </span></span><a href="http://www.ncl.ucar.edu/" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;color:rgb(0,120,215)" target="_blank" class="">http://www.ncl.ucar.edu/</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class=""><span class=""> </span>for
more details.</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">(0) Hello</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">fatal:syntax error: line -1 before or near \n</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">name2</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">-----^</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">fatal:error in statement</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">What am I doing wrong?</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">FYI, Here are the associated file contents:</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">[</span><a href="mailto:bidyut@localhost" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">bidyut@localhost</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">]$
cat myfile</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">name1</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">name2</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">[</span><a href="mailto:bidyut@localhost" style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" target="_blank" class="">bidyut@localhost</a><span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">]$
cat myfile.ncl</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">begin</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">print("Hello")</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">end</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Thanks,</span><br style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px" class="">
<span style="font-family:-apple-system,HelveticaNeue;font-size:14.6667px;display:inline" class="">Bidyut</span><br class="">
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<div id="gmail-m_64638788895627947ms-outlook-mobile-signature" class="">
<div class=""><br class="">
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Dr. Brian Thomas<br class="">
Professor<br class="">
Physics & Astronomy<br class="">
Washburn University<br class="">
<br class="">
Sent from my mobile device</div>
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-- <br class="">
<div dir="ltr" class="gmail_signature">
<div dir="ltr" class=""><i class=""><font face="georgia, serif" class=""><b class="">Bidyut Bikash Goswami</b><br class="">
Research Professor<br class="">
Irreversible Climate Change Research Center (IRCC)</font></i>
<div class="">
<div class=""><i class=""><font face="georgia, serif" class="">Yonsei University</font></i></div>
<div class=""><i class=""><font face="georgia, serif" class="">Seoul, South Korea</font></i></div>
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<div style="font-size: 12px;" class="">@#@#@#@#@#@#@#@#@#@#@#@#@#@#@#<wbr class="">@#@#@#@#@#@</div>
<div style="font-size: 12px;" class="">Brian C. Thomas, PhD</div>
<div style="font-size: 12px;" class="">Professor, Physics and Astronomy, Washburn University</div>
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<div style="font-size: 12px;" class=""><a href="tel:(785)%20670-2144" value="+17856702144" target="_blank" class="">785-670-2144</a></div>
<div style="font-size: 12px;" class=""><a href="mailto:brian.thomas@washburn.edu" target="_blank" class="">brian.thomas@washburn.edu</a></div>
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<div style="font-size: 12px;" class="">Web: <a href="http://www.washburn.edu/faculty/bthomas/" target="_blank" class="">http://www.washburn.edu/<wbr class="">faculty/bthomas/</a></div>
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<div style="font-size: 14px;" class=""><span style="font-size: 12px;" class="">ORCID profile: <span style="text-align: -webkit-auto;" class=""><a href="http://orcid.org/0000-0001-9091-0830" target="_blank" class="">http://orcid.org/<wbr class="">0000-0001-9091-0830</a></span></span></div>
<div class="">ResearchGate profile: <a href="https://www.researchgate.net/profile/Brian_Thomas" target="_blank" class="">https://www.<wbr class="">researchgate.net/profile/<wbr class="">Brian_Thomas</a></div>
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<div style="font-size: 12px;" class="">Department of Physics and Astronomy</div>
<div style="font-size: 12px;" class="">Washburn University</div>
<div style="font-size: 12px;" class=""><a href="https://maps.google.com/?q=1700+SW+College+Ave.%0D+Topeka,+KS+66621&entry=gmail&source=g" class="">1700 SW College Ave.</a></div>
<div style="font-size: 12px;" class=""><a href="https://maps.google.com/?q=1700+SW+College+Ave.%0D+Topeka,+KS+66621&entry=gmail&source=g" class="">Topeka, KS 66621</a></div>
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