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<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">I’m still at it. I had to abandon the efforts to write NetCDF in Fortran via WRAPIT – in the end it just refused to compile, even when I hard-coded the Includes into the WRAPIT script.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">[as a complete aside: Mac users! Do not, I repeat, do NOT upgrade your system to 10.14 or higher. The system security is full-on paranoia, and editing files in (eg) /usr or /opt requires a lot of
tomfoolery. I know I mentioned it last time but it’s worth mentioning again.]<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">So I’ve split the task into two scripts, working on two sections of the year range I need, and with handovers of key settings and data in files.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">New problem! The ESMF gridding isn’t working any more:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Fortran runtime error: shape and target do not conform<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:The result of the conditional expression yields a missing value. NCL can not determine branch, see ismissing function<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2977 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:["Execute.c":8637]:Execute: Error occurred at or near line 4052 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:["Execute.c":8637]:Execute: Error occurred at or near line 484 in file verifyforcev3.2a.ncl<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">The relevant lines in my script are:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt = True<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@DstGridLat = dlats;<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@DstGridLon = dlons;<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@SrcRegional = True;<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@DstRegional = True;<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@SrcGridLat = crulats;<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@SrcGridLon = crulons;<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@InterpMethod = "neareststod"; we just want to replicate CRU TS into the higher-resolution grid<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Opt@WgtFileName = "weights_cruts_subset_neareststod.nc";<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">crutmp125 = ESMF_regrid(crutmp,Opt); copy CRUTMP into the high-resolution grid<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">That last line is, of course, #484.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">None of the gridding code has changed, and I can’t work out what the error messages are trying to tell me. Previous versions of the script, ie, ones that haven’t been fiddled with in the latest shenanigans,
give the same error. This leads me to suspect the new install of NCL.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Finally, because I know I’ll be asked for it, here’s the regridding with Debug = True:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) get_src_grid_info: source lat dims = (76)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) get_src_grid_info: source lon dims = (140)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) get_src_grid_info: source grid type is 'rectilinear'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) curvilinear_to_SCRIP: calculating grid corners...<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) curvilinear_to_SCRIP: no lat values are at the poles, so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calculating grid corners using<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries...<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max original lat: 35.25/72.75<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max original lon: -24.75/44.75<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max Extlat2d: 34.75/73.25<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max Extlon2d: -25.25/45.25<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max ExtGridCenter_lat: 35/73<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max ExtGridCenter_lon: -25/45<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) get_dst_grid_info: destination lat dims = (304)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) get_dst_grid_info: destination lon dims = (560)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) curvilinear_to_SCRIP: calculating grid corners...<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) curvilinear_to_SCRIP: no lat values are at the poles, so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calculating grid corners using<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries...<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max original lat: 35.0625/72.9375<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max original lon: -24.9375/44.9375<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max Extlat2d: 34.9375/73.0625<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max Extlon2d: -25.0625/45.0625<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) calc_SCRIP_corners_noboundaries<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max ExtGridCenter_lat: 35/73<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) min/max ExtGridCenter_lon: -25/45<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) ESMF_regrid_gen_weights: number of processors used: 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) --------------------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) ESMF_regrid_gen_weights: the following command is about to be executed on the system:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) 'ESMF_RegridWeightGen --ignore_degenerate --source source_grid_file.nc --destination destination_grid_file.nc --weight weights_cruts_subset_neareststod.nc --method
neareststod --src_regional --dst_regional -i'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) --------------------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">Fortran runtime error: shape and target do not conform<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) ESMF_regrid_gen_weights: output from 'ESMF_RegridWeightGen':<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) missing<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">(0) --------------------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:The result of the conditional expression yields a missing value. NCL can not determine branch, see ismissing function<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2977 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:["Execute.c":8637]:Execute: Error occurred at or near line 4052 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";mso-fareast-language:EN-US">fatal:["Execute.c":8637]:Execute: Error occurred at or near line 485 in file verifyforcev3.2a.ncl<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Cheers for any insights,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Harry<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black">ncl-talk <ncl-talk-bounces@mailman.ucar.edu> on behalf of "Ian Harris (ENV - Staff) via ncl-talk" <ncl-talk@mailman.ucar.edu><br>
<b>Reply to: </b>"Ian Harris (ENV - Staff)" <I.Harris@uea.ac.uk><br>
<b>Date: </b>Sunday, 19 July 2020 at 01:05<br>
<b>To: </b>"ncl-talk@mailman.ucar.edu" <ncl-talk@mailman.ucar.edu><br>
<b>Subject: </b>Re: [ncl-talk] Using NetCDF with WRAPIT<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Okay, I’ve moved things on.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<div>
<p class="MsoNormal">1. I located and edited the WRAPIT script. This has a ’set compiler options’ section, and within that a 'Darwin' subsection. Here I was able to add the minimum includes and libraries for NetCDF to be incorporated. Easy. This meant I didn’t
need to spend two days upgrading everything, which is a shame, because of point 2.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<div>
<p class="MsoNormal">2. Because I upgraded the Mac to 10.14 ('Mojave'), a security feature called FDA (Full Disk Access) prevents me from running WRAPIT! It’s very restrictive if you want to do things outside of the approved areas (ie, buying Apple Music, joining
Apple TV, etc). You can add apps to FDA in the system Prefs, but not scripts. I tried writing a dummy Fortran proglet to run the script, but I don’t get any outputs, so that’s not working.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">It doesn’t get easier!<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Harry<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b><span style="color:black">From: </span></b><span style="color:black">ncl-talk <<a href="mailto:ncl-talk-bounces@mailman.ucar.edu">ncl-talk-bounces@mailman.ucar.edu</a>> on behalf of "Ian Harris (ENV - Staff) via ncl-talk" <<a href="mailto:ncl-talk@mailman.ucar.edu">ncl-talk@mailman.ucar.edu</a>><br>
<b>Reply-To: </b>Ian Harris <<a href="mailto:i.harris@uea.ac.uk">i.harris@uea.ac.uk</a>><br>
<b>Date: </b>Friday, 17 July 2020 at 23:57<br>
<b>To: </b>ncl-talk <<a href="mailto:ncl-talk@mailman.ucar.edu">ncl-talk@mailman.ucar.edu</a>><br>
<b>Subject: </b>Re: [ncl-talk] Using NetCDF with WRAPIT<o:p></o:p></span></p>
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<div>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Hi Rick,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Nice suggestion, sadly no difference.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">One of the reasons I went for a manual ncl install (“You have chosen Slow and Painful”) was in case I could mod WRAPIT to recognise Includes (or even just hard code NetCDF into it). I haven’t attempted
that <b>yet</b>..<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Cheers<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Harry<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="color:black">From: </span></b><span style="color:black">Rick Brownrigg <<a href="mailto:brownrig@ucar.edu">brownrig@ucar.edu</a>><br>
<b>Date: </b>Friday, 17 July 2020 at 18:41<br>
<b>To: </b>Ian Harris <<a href="mailto:i.harris@uea.ac.uk">i.harris@uea.ac.uk</a>><br>
<b>Cc: </b>ncl-talk <<a href="mailto:ncl-talk@mailman.ucar.edu">ncl-talk@mailman.ucar.edu</a>><br>
<b>Subject: </b>Re: [ncl-talk] Using NetCDF with WRAPIT<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Hi Harry,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif;color:black">I don't know for certain. It really looks like the compiler is not finding the netcdf header, and needs the equivalent of a -I/usr/local/include option. As you point
out, WRAPIT doesn't accept that (seems like an oversight to me).</span><span style="font-size:10.5pt;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif;color:black">I presume you are using gfortran? It manual states: "The
</span><code><span style="font-size:10.0pt;color:black">gfortran</span></code><span style="font-size:10.5pt;font-family:"Arial",sans-serif;color:black"> compiler currently does not make use of any environment variables to control its operation</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif;color:red">
above and beyond </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif;color:black">those that affect the operation of
</span><code><span style="font-size:10.0pt;color:black">gcc"</span></code><span style="font-size:10.5pt;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><code><span style="font-size:10.0pt;color:black">With that, you might try setting CPATH:</span></code><span style="font-size:10.5pt;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><code><span style="font-size:10.0pt;color:black">export CPATH=/usr/local/include</span></code><span style="font-size:10.5pt;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><code><span style="font-size:10.0pt;color:black">Other than that, you might try running WRAPIT with the -d switch. This will show the build commands and not delete temporary outputs. From there you might be able to manually fix-up and run
the appropriate build commands.</span></code><span style="font-size:10.5pt;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><code><span style="font-size:10.0pt;color:black">Wish I had a better answer...</span></code><span style="font-size:10.5pt;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><code><span style="font-size:10.0pt;color:black">Rick</span></code><span style="font-size:10.5pt;color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
</div>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<div>
<p class="MsoNormal"><span style="font-size:10.5pt;color:black">On Fri, Jul 17, 2020 at 10:32 AM Ian Harris (ENV - Staff) via ncl-talk <<a href="mailto:ncl-talk@mailman.ucar.edu">ncl-talk@mailman.ucar.edu</a>> wrote:<o:p></o:p></span></p>
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<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0cm 0cm 0cm 6.0pt;margin-left:4.8pt;margin-right:0cm">
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Hi Rick,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">WRAPIT Version: 120209<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">A syntax error occurred while parsing: include<o:p></o:p></span></p>
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<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">COMPILING /Users/ianharris/Programs/Fortran/forverify3.for<o:p></o:p></span></p>
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<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">/Users/ianharris/Programs/Fortran/forverify3.for:443: Error: Can't open included file 'netcdf.inc'<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">LINKING<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">gcc: error: forverify3.o: No such file or directory<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">rm: forverify3.o: No such file or directory<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">END WRAPIT<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">This is the gfortran equivalent that works:<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">% gfortran -m64 -I/usr/local/include/ -L/usr/local/lib -lnetcdf /usr/local/lib/libnetcdff.a ~/Programs/Fortran/forverify3.for<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">also, new tree from macports:<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">% gfortran -m64 -I/opt/local/include/ -L/opt/local/lib -lnetcdf /opt/local/lib/libnetcdff.a ~/Programs/Fortran/forverify3.for<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Now WRAPIT doesn't like Includes, and you have to put spaces after the -L and -l linkages, but:<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">% WRAPIT -m64 -L /opt/local/lib -l netcdf /opt/local/lib/libnetcdff.a ~/Programs/Fortran/forverify3.for<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"> <o:p></o:p></span></p>
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<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">WRAPIT Version: 120209<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">A syntax error occurred while parsing: include<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">COMPILING /Users/ianharris/Programs/Fortran/forverify3.for<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">/Users/ianharris/Programs/Fortran/forverify3.for:442: Error: Can't open included file 'netcdf.inc'<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">LINKING<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">gcc: error: forverify3.o: No such file or directory<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">rm: forverify3.o: No such file or directory<o:p></o:p></span></p>
</div>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">END WRAPIT<o:p></o:p></span></p>
</div>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
</div>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Cheers<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Harry<o:p></o:p></span></p>
</div>
<div class="MsoNormal" align="center" style="text-align:center"><span style="font-size:10.5pt;color:black">
<hr size="0" width="100%" align="center">
</span></div>
<div id="gmail-m_4122559872299673996divRplyFwdMsg">
<p class="MsoNormal"><b><span style="color:black">From:</span></b><span style="color:black"> Rick Brownrigg <<a href="mailto:brownrig@ucar.edu" target="_blank">brownrig@ucar.edu</a>><br>
<b>Sent:</b> 17 July 2020 17:15<br>
<b>To:</b> Ian Harris (ENV - Staff) <<a href="mailto:I.Harris@uea.ac.uk" target="_blank">I.Harris@uea.ac.uk</a>><br>
<b>Cc:</b> Dennis Shea via ncl-talk <<a href="mailto:ncl-talk@mailman.ucar.edu" target="_blank">ncl-talk@mailman.ucar.edu</a>><br>
<b>Subject:</b> Re: [ncl-talk] Using NetCDF with WRAPIT</span><span style="font-size:10.5pt;color:black">
<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"> <o:p></o:p></span></p>
</div>
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<div style="mso-element:para-border-div;border:solid red 3.0pt;padding:6.0pt 6.0pt 6.0pt 6.0pt">
<p align="center" style="text-align:center;border:none;padding:0cm"><b><span style="font-size:10.5pt;color:black">Warning:</span></b><span style="font-size:10.5pt;color:black"> This email is from outside the UEA system. Do not click on links or attachments
unless you expect them from the sender and know the content is safe. <o:p></o:p></span></p>
</div>
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Hi,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">What do you mean by "cannot get WRAPIT to recognise the "include 'netcdf.inc'""? Are you getting a compiler error, or an error from WRAPIT itself, or? I see you have -L directives pointing to
where the netcdf library resides; do you need a similar -I directive to point to where the header is?<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Rick<o:p></o:p></span></p>
</div>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<div>
<p class="MsoNormal"><span style="font-size:10.5pt;color:black">On Fri, Jul 17, 2020 at 10:03 AM Ian Harris (ENV - Staff) via ncl-talk <<a href="mailto:ncl-talk@mailman.ucar.edu" target="_blank">ncl-talk@mailman.ucar.edu</a>> wrote:<o:p></o:p></span></p>
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<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0cm 0cm 0cm 6.0pt;margin-left:4.8pt;margin-right:0cm">
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Hi,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">I need to write NetCDF files with a Fortran subroutine, because there seems to be a memory leak in addfile(). I know that was supposed to be fixed years back, but I have memory usage graphs that
indicate otherwise. And yes, I have comprehensive deletion strategies.<o:p></o:p></span></p>
</div>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">I've tried a lot of things, including reinstalling ncl, (oh, yes..), NetCDF, etc, etc, but I cannot get WRAPIT to recognise the "include 'netcdf.inc'" line in the subroutine. Has anyone managed
this? How did you link to the libraries?<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Here are a couple examples that don't work:<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
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<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">WRAPIT -L/usr/local/lib -l netcdf -L /usr/local /usr/local/lib/libnetcdff.a /usr/local/lib/libnetcdf.a ~/Programs/Fortran/forverify3.for<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">WRAPIT -L /opt/local/lib -l netcdf -L /opt/local -l libnetcdff.a ~/Programs/Fortran/forverify3.for<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">..I just chose two from dozens.<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Is it actually *possible* to have a NetCDF-aware Fortran subroutine under WRAPIT?<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Cheers<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Harry<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:10.5pt;color:black">_______________________________________________<br>
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