[ncl-install] NCARG Issue with ncargf77
Orhan Eroglu
oero at ucar.edu
Tue Aug 3 12:06:12 MDT 2021
Hi Omar,
Although I couldn't fix it fully, I'd like to share my findings with you:
As @Andrei Kurbatov <akurbatov at maine.edu> suggested in a different post,
this is a compiler issue (Both gfortran and gcc). For example, in your
platform, when you call `ncargex`, I can understand from your outputs that
it is trying to rung gfortran compiler at `/home/conda/feedstock_root/
build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-
gfortran` and can't find it.
I'd like to ask you to run the commands
`which gfortran`
`which gcc`
*in the other platforms where you said that `ncargex` works properly*.
FYI: gfortran and gcc compilers are also not being set properly after my
NCL installation conda in my MacOS environment, and I couldn't get it fixed
yet though I attempted to manually point to compilers' locations.
Therefore, I couldn't fix this issue yet, unfortunately.
Sorry for any inconveniences.
as
On Wed, Jul 28, 2021 at 12:13 PM OMAR SANCHEZ CAMACHO <
cmomar_alf at comunidad.unam.mx> wrote:
> Hello Orhan,
>
> Of course, if I find some solution I will tell you.
>
> We keep in touch.
>
> Omar Sánchez Camacho.
> ------------------------------
> *From:* Orhan Eroglu <oero at ucar.edu>
> *Sent:* Wednesday, July 28, 2021 10:50:53 AM
> *To:* OMAR SANCHEZ CAMACHO <cmomar_alf at comunidad.unam.mx>
> *Cc:* ncl-install at mailman.ucar.edu <ncl-install at mailman.ucar.edu>
> *Subject:* Re: [ncl-install] NCARG Issue with ncargf77
>
> Hi Omar,
>
> Thanks a lot for the details; they are helpful!
>
> FYI: I have a conda-installed NCL environment in my Darwin (MacOS)
> platform, and I am having the same issue with ncargex as you have. I will
> keep looking into this as you said your other computers with
> conda-installed NCL environment are able to run ncargex.
>
> *Other ncl-install members:*
>
> Please feel free to step in if you any ideas on this issue.
>
> Best,
>
> On Wed, Jul 28, 2021 at 9:23 AM OMAR SANCHEZ CAMACHO <
> cmomar_alf at comunidad.unam.mx> wrote:
>
> Hello Orhan,
>
> In the other computer where I be able to run `ncargex` and `ncargf77` I
> have the NCL environment CONDA (Anaconda).
>
> Currently I work with Linux (Debian 10) and here is where I had the
> problems previously said, but before I used to work with Ubuntu
> distribution, on this computer I could compile `ncargf77` but some days ago
> this computer crashed, that's the reason for I change of computer. In both
> computers I work with CONDA (Anaconda).
>
> I would like to solve this problem because I need to compile NCARG
> Graphics Fortran programs, I work in CDF and I use NCARG Fortran programs
> to visualize my results.
>
> Hope this information will be useful.
>
> Best wishes.
>
> Omar Sánchez C.
> ------------------------------
> *From:* Orhan Eroglu <oero at ucar.edu>
> *Sent:* Wednesday, July 28, 2021 9:48:35 AM
> *To:* OMAR SANCHEZ CAMACHO <cmomar_alf at comunidad.unam.mx>
> *Cc:* ncl-install at mailman.ucar.edu <ncl-install at mailman.ucar.edu>
> *Subject:* Re: [ncl-install] NCARG Issue with ncargf77
>
> Hi Omar,
>
> I continued working on it but couldn't get it to work. I believe that
> compiling/linking NCAR Graphics C or Fortran programs (i.e. ncargex)
> probably needs a NCL environment that is built from source instead of
> installed via conda, which is unfortunately beyond my expertise. Could you
> clarify what NCL environments (i.e. conda or built from source) the other
> computers have, in which you are able to run `ncargex` commands.
>
> My personal view is that running `ncargex` is for users who need to
> compile NCAR Graphics C or Fortran programs. SO, if you don't have
> particular reason to compile NCAR Graphics C or Fortran programs, you might
> be fine just running NCL.
>
> Regards,
>
> On Thu, Jul 22, 2021 at 2:08 PM OMAR SANCHEZ CAMACHO <
> cmomar_alf at comunidad.unam.mx> wrote:
>
> Thanks a lot for your response.
>
> I still need help because I don't run *.f programs with NCARG, when I type
> the command:
>
>
>
>
> *$ ncargf77 drag_vs_step.f *
>
>
> *Output is: *
>
>
> *"/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran
> -fPIC -fno-second-underscore -fno-range-check -fopenmp -O
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common
> -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags
> -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib
> -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib
> -L/home/omar13/anaconda3/envs/ncl_stable/lib drag_vs_step.f
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg
> -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig
> -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2 *
> */home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran:
> Command not found." *
>
> And when I try to run an example of NCARG:
>
>
>
>
> *$ ncargex fcover *
>
>
>
> *Output is: *
>
>
>
> *"NCAR Graphics Fortran Fundamentals Example <fcover> *
>
>
>
> * Copying fcover.f *
>
>
>
> * Copying fcover.dat *
>
>
> *Compiling and linking... *
>
>
> */home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran
> -fPIC -fno-second-underscore -fno-range-check -fopenmp -O
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common
> -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags
> -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib
> -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -o fcover fcover.f
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg
> -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig
> -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2 *
>
>
>
> */home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran:
> Command not found. *
>
> *The compile and link failed." *
> I sure that the example fcover and the program
> drag_vs_step.f are right
>
>
> I am sure that my program (*drag_vs_step.f*) and the example (fcover) are
> fine because I can compile them without any problem on another computer
> with NCARG. So I don't know what is the problem here.
>
> Kind regards.
>
> Omar Sánchez C.
>
> ------------------------------
> *De:* Orhan Eroglu <oero at ucar.edu>
> *Enviado:* jueves, 22 de julio de 2021 8:41 a. m.
> *Para:* OMAR SANCHEZ CAMACHO
> *Cc:* ncl-install at mailman.ucar.edu
> *Asunto:* Re: [ncl-install] NCARG Issue with ncargf77
>
> Hi Omar,
>
> I am sorry to hear inconvenience you had!
>
> Before moving forward, I'd like to clarify some thing about your
> environment variables first. Even though you say that "I don't have
> either NCARG_ROOT, or NCARG_BIN, NCARG_LIB, and NCARG_INCLUDE set", you
> seem to have NCARG_ROOT variable set properly as we can see from
>
> Output:
>
> NCARG_ROOT=/home/omar13/anaconda3/envs/ncl_stable
>
> as well as you were able to run successfully
>
> $ ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
>
> $ ncl $NCARG_ROOT/lib/ncarg/nclex/nug/NUG_multi_timeseries.ncl
>
> If we agree on this and you still have your issues running ncargex, I am
> happy to further help.
>
> Best,
>
> On Tue, Jun 22, 2021 at 10:15 AM OMAR SANCHEZ CAMACHO via ncl-install <
> ncl-install at mailman.ucar.edu> wrote:
>
> Hello,
>
> I am trying to compile and execute and example with NCARG following the
> instructions on "Chapter 2: Five quick steps for creating and viewing
> your plot", but I have a problem when I execute:
>
> $ env
>
> I don't have either NCARG_ROOT, or NCARG_BIN, NCARG_LIB, and NCARG_INCLUDE
> set, I don't know why, because I followed the installation instructions
> (I've installed with Conda), even I tested NCL with:
>
> $ ncl -V
>
> $ ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
>
> $ ncl $NCARG_ROOT/lib/ncarg/nclex/nug/NUG_multi_timeseries.ncl
>
> and all of them works, but when I execute:
>
> $ ncargex fcover
>
> Output is:
>
> "NCAR Graphics Fortran Fundamentals Example <fcover>
>
> Copying fcover.f
>
> Copying fcover.dat
>
> Compiling and linking...
>
> /home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran
> -fPIC -fno-second-underscore -fno-range-check -fopenmp -O
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common
> -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags
> -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib
> -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -o fcover fcover.f
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg
> -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig
> -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
>
> /home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran:
> Command not found.
>
> The compile and link failed."
>
>
>
> The same issue is also present when I compile my own *.f program (I am
> sure it is okay, because I can run it with other computer with NCL):
>
> $ ncargf77 drag_vs_step.f
>
> Output is:
>
> "/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran
> -fPIC -fno-second-underscore -fno-range-check -fopenmp -O
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common
> -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags
> -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib
> -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib
> -L/home/omar13/anaconda3/envs/ncl_stable/lib drag_vs_step.f
> -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg
> -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig
> -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
>
> /home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran:
> Command not found."
>
> ________________________________________________________
>
> Outputs from typing the following commands from a UNIX terminal window:
>
> $ conda list -n ncl_stable
>
> Output:
>
> # packages in environment at /home/omar13/anaconda3/envs/ncl_stable:
>
> #
>
> # Name Version Build Channel
>
> _libgcc_mutex 0.1 conda_forge conda-forge
>
> _openmp_mutex 4.5 1_gnu conda-forge
>
> boost-cpp 1.74.0 h9359b55_0 conda-forge
>
> bzip2 1.0.8 h7f98852_4 conda-forge
>
> c-ares 1.17.1 h7f98852_1 conda-forge
>
> ca-certificates 2021.5.30 ha878542_0 conda-forge
>
> cairo 1.16.0 h488836b_1006 conda-forge
>
> cfitsio 3.470 h2e3daa1_7 conda-forge
>
> curl 7.76.1 h979ede3_1 conda-forge
>
> esmf 8.0.1 nompi_hcaa3220_2 conda-forge
>
> expat 2.4.1 h9c3ff4c_0 conda-forge
>
> fontconfig 2.13.1 hba837de_1005 conda-forge
>
> freetype 2.10.4 h0708190_1 conda-forge
>
> freexl 1.0.6 h7f98852_0 conda-forge
>
> geos 3.8.1 he1b5a44_0 conda-forge
>
> geotiff 1.6.0 h5d11630_3 conda-forge
>
> gettext 0.19.8.1 h0b5b191_1005 conda-forge
>
> giflib 5.2.1 h36c2ea0_2 conda-forge
>
> gsl 2.6 he838d99_2 conda-forge
>
> hdf4 4.2.15 h10796ff_3 conda-forge
>
> hdf5 1.10.6 nompi_h7c3c948_1111
> conda-forge
>
> hdfeos2 2.20 h64bfcee_1000 conda-forge
>
> hdfeos5 5.1.16 hb4ce793_7 conda-forge
>
> icu 67.1 he1b5a44_0 conda-forge
>
> jasper 1.900.1 h07fcdf6_1006 conda-forge
>
> jpeg 9d h36c2ea0_0 conda-forge
>
> json-c 0.13.1 hbfbb72e_1002 conda-forge
>
> kealib 1.4.14 hcc255d8_2 conda-forge
>
> krb5 1.17.2 h926e7f8_0 conda-forge
>
> libblas 3.9.0 8_openblas conda-forge
>
> libcblas 3.9.0 8_openblas conda-forge
>
> libcurl 7.76.1 hc4aaa36_1 conda-forge
>
> libdap4 3.20.6 hd7c4107_2 conda-forge
>
> libedit 3.1.20191231 he28a2e2_2 conda-forge
>
> libev 4.33 h516909a_1 conda-forge
>
> libffi 3.3 h58526e2_2 conda-forge
>
> libgcc-ng 9.3.0 h2828fa1_19 conda-forge
>
> libgdal 3.1.4 h50e41a3_1 conda-forge
>
> libgfortran-ng 7.5.0 h14aa051_19 conda-forge
>
> libgfortran4 7.5.0 h14aa051_19 conda-forge
>
> libglib 2.68.3 h3e27bee_0 conda-forge
>
> libgomp 9.3.0 h2828fa1_19 conda-forge
>
> libiconv 1.16 h516909a_0 conda-forge
>
> libkml 1.3.0 h238a007_1013 conda-forge
>
> libnetcdf 4.7.4 nompi_h56d31a8_107 conda-forge
>
> libnghttp2 1.43.0 h812cca2_0 conda-forge
>
> libopenblas 0.3.12 pthreads_hb3c22a3_1
> conda-forge
>
> libpng 1.6.37 h21135ba_2 conda-forge
>
> libpq 12.3 h255efa7_3 conda-forge
>
> librttopo 1.1.0 hb271727_4 conda-forge
>
> libspatialite 5.0.1 h6ec7341_0 conda-forge
>
> libssh2 1.9.0 ha56f1ee_6 conda-forge
>
> libstdcxx-ng 9.3.0 h6de172a_19 conda-forge
>
> libtiff 4.2.0 hbd63e13_2 conda-forge
>
> libuuid 2.32.1 h7f98852_1000 conda-forge
>
> libwebp-base 1.2.0 h7f98852_2 conda-forge
>
> libxcb 1.13 h7f98852_1003 conda-forge
>
> libxml2 2.9.10 h68273f3_2 conda-forge
>
> lz4-c 1.9.3 h9c3ff4c_0 conda-forge
>
> ncl 6.6.2 h087f628_23 conda-forge
>
> ncurses 6.2 h58526e2_4 conda-forge
>
> netcdf-fortran 4.5.3 nompi_hfef6a68_101 conda-forge
>
> openjpeg 2.4.0 hb52868f_1 conda-forge
>
> openssl 1.1.1k h7f98852_0 conda-forge
>
> pcre 8.45 h9c3ff4c_0 conda-forge
>
> pixman 0.38.0 h516909a_1003 conda-forge
>
> poppler 0.89.0 h2de54a5_5 conda-forge
>
> poppler-data 0.4.10 0 conda-forge
>
> postgresql 12.3 hc2f5b80_3 conda-forge
>
> proj 7.1.1 h966b41f_3 conda-forge
>
> pthread-stubs 0.4 h36c2ea0_1001 conda-forge
>
> readline 8.1 h46c0cb4_0 conda-forge
>
> sqlite 3.36.0 h9cd32fc_0 conda-forge
>
> tiledb 2.1.6 h91fcb0e_1 conda-forge
>
> tk 8.6.10 h21135ba_1 conda-forge
>
> tzcode 2021a h7f98852_1 conda-forge
>
> udunits2 2.2.27.27 h975c496_1 conda-forge
>
> xerces-c 3.2.3 hfe33f54_1 conda-forge
>
> xorg-imake 1.0.7 0 conda-forge
>
> xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
>
> xorg-libice 1.0.10 h7f98852_0 conda-forge
>
> xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
>
> xorg-libx11 1.6.12 h36c2ea0_0 conda-forge
>
> xorg-libxau 1.0.9 h7f98852_0 conda-forge
>
> xorg-libxaw 1.0.14 h7f98852_0 conda-forge
>
> xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
>
> xorg-libxext 1.3.4 h516909a_0 conda-forge
>
> xorg-libxmu 1.1.3 h516909a_0 conda-forge
>
> xorg-libxpm 3.5.13 h516909a_0 conda-forge
>
> xorg-libxrender 0.9.10 h516909a_1002 conda-forge
>
> xorg-libxt 1.1.5 h516909a_1003 conda-forge
>
> xorg-makedepend 1.0.6 he1b5a44_1 conda-forge
>
> xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
>
> xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
>
> xorg-xproto 7.0.31 h7f98852_1007 conda-forge
>
> xz 5.2.5 h516909a_1 conda-forge
>
> zlib 1.2.11 h516909a_1010 conda-forge
>
> zstd 1.4.9 ha95c52a_0 conda-forge
>
>
> $ conda --version
>
> Output:
>
> conda 4.10.1
>
> $ which ncl
>
> Output:
>
> /home/omar13/anaconda3/envs/ncl_stable/bin/ncl
>
> $ ncl -V
>
> Output:
>
> 6.6.2
>
> $ env | grep NCARG
>
> Output:
>
> NCARG_ROOT=/home/omar13/anaconda3/envs/ncl_stable
>
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