[ncl-install] Problem installing NCL with conda on MacOS 10.14 Mojave

Tor Blaabjerg Sørensen torsor1996 at gmail.com
Sun Nov 15 14:42:33 MST 2020


Hi

I've tried to install NCL according to this guide:
https://www.ncl.ucar.edu/Download/conda.shtml but it fails. After
completing the installation and running:
conda activate ncl_stable
ncl -V

I get following:

dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib
  Referenced from: /anaconda3/envs/ncl_stable/bin/ncl
  Reason: image not found
Abort trap: 6

I have tried updating both the root and ncl_stable environment and
reinstalling ncl, without any effect on the outcome. Do you have a fix for
this?

Thanks,
Tor Blaabjerg Sørensen

Here are the info you're asking for on the troubleshooting page:

conda list -n ncl_stable

# packages in environment at /anaconda3/envs/ncl_stable:

#

# Name                    Version                   Build  Channel

boost-cpp                 1.74.0               he5d75e3_0    conda-forge

bzip2                     1.0.8                haf1e3a3_3    conda-forge

c-ares                    1.16.1               haf1e3a3_3    conda-forge

ca-certificates           2020.11.8            h033912b_0    conda-forge

cairo                     1.16.0            ha8983da_1005    conda-forge

certifi                   2020.11.8        py39h6e9494a_0    conda-forge

cfitsio                   3.470                h422484a_7    conda-forge

curl                      7.71.1               hcb81553_8    conda-forge

esmf                      8.0.1           nompi_h39dff87_2    conda-forge

expat                     2.2.9                hb1e8313_2    conda-forge

fontconfig                2.13.1            h186bf41_1002    conda-forge

freetype                  2.10.4               h3f75d11_0    conda-forge

freexl                    1.0.5             h0b31af3_1002    conda-forge

geos                      3.8.1                h4a8c4bd_0    conda-forge

geotiff                   1.6.0                hc1004f4_3    conda-forge

gettext                   0.19.8.1             h1f1d5ed_1    conda-forge

giflib                    5.2.1                hbcb3906_2    conda-forge

glib                      2.66.1               h9bbe63b_0

gsl                       2.6                  hdac7af7_0    conda-forge

hdf4                      4.2.13            h84186c3_1003    conda-forge

hdf5                      1.10.6          nompi_hc457bb4_1110    conda-forge

hdfeos2                   2.20              h207910d_1000    conda-forge

hdfeos5                   5.1.16               h01d30be_7    conda-forge

icu                       67.1                 hb1e8313_0    conda-forge

jasper                    1.900.1           h636a363_1006    conda-forge

jpeg                      9d                   hbcb3906_0    conda-forge

json-c                    0.13.1            h575e443_1002    conda-forge

kealib                    1.4.13               h40102fb_1    conda-forge

krb5                      1.17.1               h75d18d8_3    conda-forge

libblas                   3.9.0           3_h7d47d6b_netlib    conda-forge

libcblas                  3.9.0           3_h7d47d6b_netlib    conda-forge

libcurl                   7.71.1               h9bf37e3_8    conda-forge

libcxx                    11.0.0               h439d374_0    conda-forge

libdap4                   3.20.6               h993cace_1    conda-forge

libedit                   3.1.20191231         h1de35cc_1

libev                     4.33                 haf1e3a3_1    conda-forge

libffi                    3.3                  hb1e8313_2

libgdal                   3.1.4                hd7bf8dc_0    conda-forge

libgfortran               4.0.0               h50e675f_13    conda-forge

libgfortran4              7.5.0               h50e675f_13    conda-forge

libiconv                  1.16                 haf1e3a3_0    conda-forge

libkml                    1.3.0             h8ca2c65_1012    conda-forge

libnetcdf                 4.7.4           nompi_h4844aed_106    conda-forge

libnghttp2                1.41.0               h7580e61_2    conda-forge

libpng                    1.6.37               h7cec526_2    conda-forge

libpq                     12.3                 haa216e0_2    conda-forge

libspatialite             5.0.0                hc85de81_0    conda-forge

libssh2                   1.9.0                h8a08a2b_5    conda-forge

libtiff                   4.1.0                hca7d577_6    conda-forge

libwebp-base              1.1.0                hbcb3906_3    conda-forge

libxml2                   2.9.10               h2c6e4a5_2    conda-forge

llvm-openmp               8.0.1                h770b8ee_0    conda-forge

lz4-c                     1.9.2                hb1e8313_3    conda-forge

ncl                       6.6.2               h34292a7_23    conda-forge

ncurses                   6.2                  h0a44026_1

netcdf-fortran            4.5.3           nompi_haced683_101    conda-forge

openjpeg                  2.3.1                h254dc36_3    conda-forge

openmp                    8.0.1                         0    conda-forge

openssl                   1.1.1h               haf1e3a3_0    conda-forge

pcre                      8.44                 hb1e8313_0    conda-forge

pip                       20.2.4           py39hecd8cb5_0

pixman                    0.38.0            h01d97ff_1003    conda-forge

poppler                   0.89.0               h3232a60_1    conda-forge

poppler-data              0.4.10                        0    conda-forge

postgresql                12.3                 hb1f69c7_2    conda-forge

proj                      7.1.1                h45baca5_3    conda-forge

python                    3.9.0                h88f2d9e_2

python_abi                3.9                      1_cp39    conda-forge

readline                  8.0                  h1de35cc_0

setuptools                50.3.1           py39hecd8cb5_1

sqlite                    3.33.0               hffcf06c_0

tiledb                    2.1.2                h4c94453_1    conda-forge

tk                        8.6.10               hb0a8c7a_0

tzcode                    2020a                h0b31af3_0    conda-forge

tzdata                    2020d                h14c3975_0

udunits2                  2.2.27.6          h776b7f1_1001    conda-forge

wheel                     0.35.1             pyhd3eb1b0_0

xerces-c                  3.2.3                h0a0444a_1    conda-forge

xz                        5.2.5                h1de35cc_0

zlib                      1.2.11               h1de35cc_3

zstd                      1.4.5                h289c70a_2    conda-forge



conda --version

conda 4.9.2



which ncl

/anaconda3/envs/ncl_stable/bin/ncl



ncl -V

dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib

  Referenced from: /anaconda3/envs/ncl_stable/bin/ncl

  Reason: image not found

Abort trap: 6



env  | grep NCARG

NCARG_ROOT=/anaconda3/envs/ncl_stable
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