[ncl-install] error: conda installed NCL reading NetCDF-4

Dave Allured - NOAA Affiliate dave.allured at noaa.gov
Thu Mar 28 18:51:29 MDT 2019


Wenshan,

This is a known bug in netcdf 4.6.2.  It is tagged as fixed in the latest
netcdf version.  Try updating your installed netcdf.

A comment in the original bug report implies that these messages are
harmless and can be ignored:

https://github.com/Unidata/netcdf-c/issues/1207

--Dave


On Thu, Mar 28, 2019 at 6:14 PM Wenshan Wang via ncl-install <
ncl-install at ucar.edu> wrote:

> Hi ncl-install team,
>
> I installed NCL in a clean conda environment but it sends out really long
> error msg reading NetCDF-4 files:
> NC4_open: path /data/wenshanw/merra2/netcdf/rdn/ant_box2/MERRA2_300.tavg1
> _2d_rad_Nx.20040624.SUB.nc mode 4096 params 0
>         HDF5 error messages turned on.
> ...
> ERROR: Invalid _NCProperties attribute
>
> Do you have any ideas what went wrong?
> No such errors using other software on the same data file.
>
> Thank you!
>
> $ conda create -n *ncl_stable* -c conda-forge ncl
> ...
> # packages in environment at /Users/wenshanw/anaconda2/envs/ncl_stable:
> #
> # Name                    Version                   Build  Channel
> boost-cpp                 1.68.0            h6f8c590_1000    conda-forge
> bzip2                     1.0.6             h1de35cc_1002    conda-forge
> ca-certificates           2019.3.9             hecc5488_0    conda-forge
> cairo                     1.16.0            h9247486_1000    conda-forge
> curl                      7.64.1               h22ea746_0    conda-forge
> esmf                      7.1.0             h5f93626_1004    conda-forge
> expat                     2.2.5             h0a44026_1002    conda-forge
> fontconfig                2.13.1            h1027ab8_1000    conda-forge
> freetype                  2.10.0               h24853df_0    conda-forge
> freexl                    1.0.5             h1de35cc_1002    conda-forge
> geos                      3.7.1             h0a44026_1000    conda-forge
> geotiff                   1.4.3             hce09ea4_1000    conda-forge
> gettext                   0.19.8.1          h46ab8bc_1002    conda-forge
> giflib                    5.1.7                h01d97ff_1    conda-forge
> glib                      2.58.3            h2836805_1001    conda-forge
> gsl                       2.4               ha2d443c_1005    conda-forge
> hdf4                      4.2.13            hf3c6af0_1002    conda-forge
> hdf5                      1.10.4          nompi_h0cbb7df_1106
> conda-forge
> hdfeos2                   2.20              h207910d_1000    conda-forge
> hdfeos5                   5.1.16               he536a34_4    conda-forge
> icu                       58.2              h0a44026_1000    conda-forge
> jasper                    1.900.1           h636a363_1006    conda-forge
> jpeg                      9c                h1de35cc_1001    conda-forge
> json-c                    0.13.1            h1de35cc_1001    conda-forge
> kealib                    1.4.10            hecf890f_1003    conda-forge
> krb5                      1.16.3            hcfa6398_1001    conda-forge
> libblas                   3.8.0                4_openblas    conda-forge
> libcblas                  3.8.0                4_openblas    conda-forge
> libcurl                   7.64.1               h16faf7d_0    conda-forge
> libcxx                    4.0.1                hcfea43d_1
> libcxxabi                 4.0.1                hcfea43d_1
> libdap4                   3.19.1            hae55d67_1000    conda-forge
> libedit                   3.1.20170329      hcfe32e1_1001    conda-forge
> libffi                    3.2.1             h6de7cb9_1006    conda-forge
> libgdal                   2.4.1                h16bfee5_0    conda-forge
> libgfortran               3.0.1                         0    conda-forge
> libiconv                  1.15              h01d97ff_1005    conda-forge
> libkml                    1.3.0             h71ee1b2_1009    conda-forge
> libnetcdf                 4.6.2             h6b88ef6_1001    conda-forge
> libpng                    1.6.36            ha441bb4_1000    conda-forge
> libpq                     11.2                 h29c6f28_0    conda-forge
> libspatialite             4.3.0a            h0cd9627_1026    conda-forge
> libssh2                   1.8.2                hcdc9a53_2    conda-forge
> libtiff                   4.0.10            h79f4b77_1001    conda-forge
> libxml2                   2.9.8             hf14e9c8_1005    conda-forge
> llvm-meta                 7.0.0                         0    conda-forge
> mpi                       1.0                       mpich    conda-forge
> mpich                     3.2.1             h71abe9c_1008    conda-forge
> ncl                       6.6.2                h2f2bd2c_1    conda-forge
> ncurses                   6.1               h0a44026_1002    conda-forge
> netcdf-fortran            4.4.5             h5ce9b53_1000    conda-forge
> openblas                  0.3.5             h436c29b_1001    conda-forge
> openjpeg                  2.3.0             h3bf0609_1003    conda-forge
> openmp                    7.0.0                h2d50403_0    conda-forge
> openssl                   1.1.1b               h01d97ff_2    conda-forge
> pcre                      8.41              h0a44026_1003    conda-forge
> pixman                    0.34.0            h1de35cc_1003    conda-forge
> poppler                   0.67.0               hb974355_6    conda-forge
> poppler-data              0.4.9                         1    conda-forge
> postgresql                11.2                 h16efa30_0    conda-forge
> proj4                     5.2.0             h1de35cc_1001    conda-forge
> readline                  7.0               hcfe32e1_1001    conda-forge
> sqlite                    3.26.0            h1765d9f_1001    conda-forge
> tk                        8.6.9             ha441bb4_1001    conda-forge
> tzcode                    2018g             h1de35cc_1001    conda-forge
> udunits2                  2.2.27.6          h776b7f1_1001    conda-forge
> xerces-c                  3.2.2             h44e365a_1001    conda-forge
> xz                        5.2.4             h1de35cc_1001    conda-forge
> zlib                      1.2.11            h1de35cc_1004    conda-forge
>
> conda 4.6.8
>
> /Users/wenshanw/anaconda2/envs/ncl_stable/bin/ncl
>
> ncl 6.6.2
>
> $ env  | grep NCARG
> NCARG_ROOT=/Users/wenshanw/anaconda2/envs/ncl_stable
>
> Best,
> Wenshan
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.ucar.edu/pipermail/ncl-install/attachments/20190328/2435da96/attachment-0001.html>


More information about the ncl-install mailing list