[ncl-install] Trouble installing on MacOS 10.14 Mojave
Alison Kohout
Alison.Kohout at niwa.co.nz
Thu Oct 25 15:08:51 MDT 2018
Hi,
I’ve been trying to install ncl from conda on my macOS 10.14, but running into trouble. Originally I tried using clang gcc, but ran into trouble. I then tried the latest gcc on homebrew, still having trouble.
It would be fantastic if you could help me out.
THANKS
Here are the details:
[kohoutal at niwa-36847 ~]$ source activate ncl_stable
(ncl_stable) [kohoutal at niwa-36847 ~]$ which ncl
/Users/kohoutal/miniconda3/envs/ncl_stable/bin/ncl
(ncl_stable) [kohoutal at niwa-36847 ~]$ ncl -V
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Users/kohoutal/miniconda3/envs/ncl_stable/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address
Referenced from: /Users/kohoutal/miniconda3/envs/ncl_stable/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Abort trap: 6
(ncl_stable) [kohoutal at niwa-36847 ~]$ otool -L `which ncl`
/Users/kohoutal/miniconda3/envs/ncl_stable/bin/ncl:
/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
@rpath/libnetcdf.13.dylib (compatibility version 13.0.0, current version 13.0.0)
@rpath/libcurl.4.dylib (compatibility version 10.0.0, current version 10.0.0)
@rpath/libhdf5_hl.100.dylib (compatibility version 102.0.0, current version 102.1.0)
@rpath/libhdf5.103.dylib (compatibility version 104.0.0, current version 104.0.0)
@rpath/libmfhdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)
@rpath/libdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)
@rpath/libjpeg.9.dylib (compatibility version 13.0.0, current version 13.0.0)
@rpath/libz.1.dylib (compatibility version 1.0.0, current version 1.2.11)
@rpath/libgdal.20.dylib (compatibility version 24.0.0, current version 24.3.0)
@rpath/libproj.12.dylib (compatibility version 13.0.0, current version 13.0.0)
@rpath/libudunits2.0.dylib (compatibility version 2.0.0, current version 2.0.0)
@rpath/libexpat.1.dylib (compatibility version 8.0.0, current version 8.7.0)
@rpath/libjasper.1.dylib (compatibility version 2.0.0, current version 2.0.0)
@rpath/libpng16.16.dylib (compatibility version 51.0.0, current version 51.0.0)
/opt/X11/lib/libcairo.2.dylib (compatibility version 11403.0.0, current version 11403.6.0)
/opt/X11/lib/libfontconfig.1.dylib (compatibility version 11.0.0, current version 11.2.0)
/opt/X11/lib/libpixman-1.0.dylib (compatibility version 35.0.0, current version 35.0.0)
/opt/X11/lib/libfreetype.6.dylib (compatibility version 19.0.0, current version 19.6.0)
/opt/X11/lib/libXrender.1.dylib (compatibility version 5.0.0, current version 5.0.0)
@rpath/libiconv.2.dylib (compatibility version 9.0.0, current version 9.0.0)
@rpath/libbz2.dylib (compatibility version 0.0.0, current version 0.0.0)
@rpath/libgsl.19.dylib (compatibility version 22.0.0, current version 22.0.0)
@rpath/libopenblas.dylib (compatibility version 0.0.0, current version 0.0.0)
/opt/X11/lib/libXpm.4.dylib (compatibility version 16.0.0, current version 16.0.0)
/opt/X11/lib/libX11.6.dylib (compatibility version 10.0.0, current version 10.0.0)
/opt/X11/lib/libXext.6.dylib (compatibility version 11.0.0, current version 11.0.0)
@rpath/libgfortran.3.dylib (compatibility version 4.0.0, current version 4.0.0)
@rpath/libquadmath.0.dylib (compatibility version 1.0.0, current version 1.0.0)
@rpath/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.19.0)
@rpath/libgomp.1.dylib (compatibility version 2.0.0, current version 2.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.60.2)
@rpath/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)
(ncl_stable) [kohoutal at niwa-36847 ~]$ env | grep NCARG
NCARG_ROOT=/Users/kohoutal/miniconda3/envs/ncl_stable
(ncl_stable) [kohoutal at niwa-36847 ~]$ which gcc
/usr/local/bin/gcc
(ncl_stable) [kohoutal at niwa-36847 ~]$ which gfortran
/usr/local/bin/gfortran
(ncl_stable) [kohoutal at niwa-36847 ~]$ gfortran --version
GNU Fortran (Homebrew GCC 8.2.0) 8.2.0
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
(ncl_stable) [kohoutal at niwa-36847 ~]$ gcc --version
gcc (Homebrew GCC 8.2.0) 8.2.0
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
[cid:imagea7a767.PNG at 9a3fc62c.46a7519f]<http://www.niwa.co.nz>
Dr Alison Kohout
Hydrodynamics Scientist
T +64-3-343-7842
National Institute of Water & Atmospheric Research Ltd (NIWA)
10 Kyle Street, Riccarton, Christchurch
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