[ncl-install] libudunits2.0.dylib
Haase, Jennifer S
jhaase at ucsd.edu
Thu Feb 23 18:59:40 MST 2017
Dear NCAR friends,
I installed ncarg 6.3.0 on two mac workstations (yosemite 10.10.5) on Feb 9th using macports listed here:
https://www.macports.org/ports.php?by=name&substr=ncarg
using the command
sudo port install ncarg
and ncl worked fine.
Today it doesn’t work, and I get the error:
jhaase at chinle:~> ncl
dyld: Library not loaded: /opt/local/lib/libudunits2.0.dylib
Referenced from: /opt/local/bin/ncl
Reason: image not found
Trace/BPT trap
jhaase at chinle:~>
We have tried to reinstall ncarg with macports again today and keep getting the same error message along with others.
I saw in a previous ncl-install thread Mary’s instructions to provide the following:
env | grep NCARG
env | grep LD
which ncl
otool -L `which ncl`
which gcc
which gfortran
So I have typed those commands and provide the output below:
jhaase at chinle:~> env | grep NCARG
NCARG_ROOT=/opt/local
jhaase at chinle:~> env | grep LD
LD_LIBRARY_PATH=/opt/local/lib
jhaase at chinle:~> exit
logout
Connection to chinle closed.
jhaase at moenkopi:docs_system> ssh chinle
Password:
Last login: Thu Feb 23 15:42:04 2017 from moenkopi.ucsd.edu
jhaase at chinle:~>
jhaase at chinle:~>
jhaase at chinle:~>
jhaase at chinle:~> env | grep NCARG
NCARG_ROOT=/opt/local
jhaase at chinle:~> env | grep LD
jhaase at chinle:~> which ncl
/opt/local/bin/ncl
jhaase at chinle:~> otool -L `which ncl`
/opt/local/bin/ncl:
/opt/local/lib/libnetcdf.11.dylib (compatibility version 11.0.0, current version 11.3.0)
/opt/local/lib/hdfeos5/lib/libhe5_hdfeos.0.dylib (compatibility version 1.0.0, current version 1.0.0)
/opt/local/lib/hdfeos5/lib/libGctp.0.dylib (compatibility version 1.0.0, current version 1.0.0)
/opt/local/lib/libhdfeos.0.dylib (compatibility version 1.0.0, current version 1.0.0)
/opt/local/lib/libmfhdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)
/opt/local/lib/libdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)
/opt/local/lib/libgdal.20.dylib (compatibility version 22.0.0, current version 22.2.0)
/opt/local/lib/libproj.12.dylib (compatibility version 13.0.0, current version 13.0.0)
/opt/local/lib/libjpeg.9.dylib (compatibility version 12.0.0, current version 12.0.0)
/opt/local/lib/libudunits2.0.dylib (compatibility version 2.0.0, current version 2.0.0)
/opt/local/lib/libexpat.1.dylib (compatibility version 8.0.0, current version 8.2.0)
/opt/local/lib/libv5d.2.dylib (compatibility version 3.0.0, current version 3.0.0)
/opt/local/lib/libjasper.4.dylib (compatibility version 4.0.0, current version 5.0.0)
/opt/local/lib/libpng16.16.dylib (compatibility version 45.0.0, current version 45.0.0)
/opt/local/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.11)
/opt/local/lib/libcairo.2.dylib (compatibility version 11403.0.0, current version 11403.8.0)
/opt/local/lib/libfontconfig.1.dylib (compatibility version 11.0.0, current version 11.2.0)
/opt/local/lib/libpixman-1.0.dylib (compatibility version 35.0.0, current version 35.0.0)
/opt/local/lib/libfreetype.6.dylib (compatibility version 20.0.0, current version 20.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1213.0.0)
/opt/local/lib/libXrender.1.dylib (compatibility version 5.0.0, current version 5.0.0)
/opt/local/lib/libbz2.1.0.dylib (compatibility version 1.0.0, current version 1.0.6)
/opt/local/lib/libXpm.4.dylib (compatibility version 16.0.0, current version 16.0.0)
/opt/local/lib/libX11.6.dylib (compatibility version 10.0.0, current version 10.0.0)
/opt/local/lib/libXext.6.dylib (compatibility version 11.0.0, current version 11.0.0)
/opt/local/lib/libgcc/libgfortran.3.dylib (compatibility version 4.0.0, current version 4.0.0)
/opt/local/lib/libgcc/libgomp.1.dylib (compatibility version 2.0.0, current version 2.0.0)
jhaase at chinle:~> which gcc
/usr/bin/gcc
jhaase at chinle:~> which gfortran
gfortran: Command not found.
jhaase at chinle:~> ncl
dyld: Library not loaded: /opt/local/lib/libudunits2.0.dylib
Referenced from: /opt/local/bin/ncl
Reason: image not found
Trace/BPT trap
jhaase at chinle:~> ncl -V
dyld: Library not loaded: /opt/local/lib/libudunits2.0.dylib
Referenced from: /opt/local/bin/ncl
Reason: image not found
Trace/BPT trap
jhaase at chinle:~>
Do you have any advice? I was trying to use macports to install ncarg uniformly on several machines so that it would be easier to maintain.
Note, in case this is useful, I am not entirely clear on the dependency on gfortran.
I understood that if I installed gcc6 using macports it would include gfortran.
However I have different results when looking for gfortran on the two machines, please see below.
I don’t understand why both machines have gcc6 installed but only one has a path to gfortran and it isn’t in the same place as gcc.
This may be an entirely different problem since ncl does not work on both machines.
Machine 1 kaibab
------------------------
jhaase at kaibab:ro_airborne> which gfortran
/usr/local/bin/gfortran
jhaase at kaibab:ro_airborne> which gcc
/usr/bin/gcc
jhaase at kaibab:ro_airborne> port info gcc6
gcc6 @6.3.0_1 (lang)
Sub-ports: libgcc
Variants: universal
Description: The GNU compiler collection, including front ends for C, C++, Objective-C,
Objective-C++, and Fortran.
Homepage: http://gcc.gnu.org/
Library Dependencies: cctools, gmp, isl, ld64, libgcc, libiconv, libmpc, mpfr
Runtime Dependencies: gcc_select
Platforms: darwin
License: {GPL-3+ Permissive}
Maintainers: none
Machine 2 chinle
-------------------------
jhaase at chinle:~> which gfortran
gfortran: Command not found.
jhaase at chinle:~> gcc
clang: error: no input files
jhaase at chinle:~>
jhaase at chinle:~>
jhaase at chinle:~> which gfortran
gfortran: Command not found.
jhaase at chinle:~> which gcc
/usr/bin/gcc
jhaase at chinle:~> port info gcc6
gcc6 @6.3.0_1 (lang)
Sub-ports: libgcc
Variants: universal
Description: The GNU compiler collection, including front ends for C, C++, Objective-C, Objective-C++, and
Fortran.
Homepage: http://gcc.gnu.org/
Library Dependencies: cctools, gmp, isl, ld64, libgcc, libiconv, libmpc, mpfr
Runtime Dependencies: gcc_select
Platforms: darwin
License: {GPL-3+ Permissive}
Maintainers: none
jhaase at chinle:~>
Thank you,
Jennifer
-------------------------------------------------
Jennifer S Haase
Research Geophysicist
Scripps Institution of Oceanography
University of California, San Diego
9500 Gilman Dr.
La Jolla, CA 92093-0225
jhaase at ucsd.edu
Phone: +1-858-534-8771
Fax: +1-858-534-9833
"Nature bats last.”
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