[ncl-install] Installing NCL 6.2.1 on CentOS 6.5 with GCC 4.4.7
David, Cedric H (329C)
Cedric.David at jpl.nasa.gov
Sat Oct 18 15:05:08 MDT 2014
Hi Mary,
Thank you for your answer. Indeed, the issue arises when I use “ncl_convert2nc” (see below). An example of the .grb files I’m dealing with is at:
ftp://hydro1.sci.gsfc.nasa.gov/data/s4pa/NLDAS/NLDAS_VIC0125_H.002/2000/001/NLDAS_VIC0125_H.A20000101.0000.002.grb
I’ve also tried “ng4ex xy01n -clean” but the problem I face there seems to be that X11 is not installed on my machine (see below). Is X11 required to be able to use ncl_convert2nc? This is almost the only tool I need for now in NCL. As I’m converting multiple years of hourly files, this tool comes in extremely handy. I had used it with NCL 6.2.0 on another machine and it worked fine with these .grb files. Is there any other example NCL script that I can try to run that doesn’t use X11?
Your thoughts are much appreciated!
Thank you,
Cedric
[chdavid at flashflood tmp]$ ncl_convert2nc NLDAS_VIC0125_H.A20000101.0000.002.grb
Processing file: NLDAS_VIC0125_H.A20000101.0000.002.grb...
Copyright (C) 1995-2014 - All Rights Reserved
University Corporation for Atmospheric Research
NCAR Command Language Version 6.2.1
The use of this software is governed by a License Agreement.
See http://www.ncl.ucar.edu/ for more details.
warning:NclGRIB: Unknown grib parameter number detected (139, center 7, table version 130 grib record 17), using default variable name (VAR_139)
warning:NclGRIB: Unknown grib parameter number detected (250, center 7, table version 130 grib record 25), using default variable name (VAR_250)
*** glibc detected *** ncl: corrupted double-linked list: 0x0000000007700360 ***
======= Backtrace: =========
/lib64/libc.so.6[0x383bc75e76]
/lib64/libc.so.6[0x383bc762fd]
/lib64/libc.so.6[0x383bc79125]
/lib64/libc.so.6(__libc_malloc+0x71)[0x383bc7a6b1]
ncl(NclMalloc+0x10)[0x761f7b]
ncl(_NclGetFileSymNames+0x21)[0x828e92]
ncl(_NclFileCleanUp+0x10)[0x829eb2]
ncl(_NclExit+0x8)[0x829f55]
ncl(NclDriver+0xc61)[0x6e38af]
ncl(main+0x9)[0x6dff2d]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x383bc1ed5d]
ncl[0x6dfe69]
======= Memory map: ========
00400000-023f0000 r-xp 00000000 08:01 1709087 /home/chdavid/installz/ncl-6.2.1/bin/ncl
025f0000-02835000 rw-p 01ff0000 08:01 1709087 /home/chdavid/installz/ncl-6.2.1/bin/ncl
02835000-030df000 rw-p 00000000 00:00 0
03827000-07a6a000 rw-p 00000000 00:00 0 [heap]
383b800000-383b820000 r-xp 00000000 08:01 1321949 /lib64/ld-2.12.so
383ba1f000-383ba20000 r--p 0001f000 08:01 1321949 /lib64/ld-2.12.so
383ba20000-383ba21000 rw-p 00020000 08:01 1321949 /lib64/ld-2.12.so
383ba21000-383ba22000 rw-p 00000000 00:00 0
383bc00000-383bd8a000 r-xp 00000000 08:01 1321952 /lib64/libc-2.12.so
383bd8a000-383bf8a000 ---p 0018a000 08:01 1321952 /lib64/libc-2.12.so
383bf8a000-383bf8e000 r--p 0018a000 08:01 1321952 /lib64/libc-2.12.so
383bf8e000-383bf8f000 rw-p 0018e000 08:01 1321952 /lib64/libc-2.12.so
383bf8f000-383bf94000 rw-p 00000000 00:00 0
383c000000-383c017000 r-xp 00000000 08:01 1321953 /lib64/libpthread-2.12.so
383c017000-383c217000 ---p 00017000 08:01 1321953 /lib64/libpthread-2.12.so
383c217000-383c218000 r--p 00017000 08:01 1321953 /lib64/libpthread-2.12.so
383c218000-383c219000 rw-p 00018000 08:01 1321953 /lib64/libpthread-2.12.so
383c219000-383c21d000 rw-p 00000000 00:00 0
383c400000-383c402000 r-xp 00000000 08:01 1321962 /lib64/libdl-2.12.so
383c402000-383c602000 ---p 00002000 08:01 1321962 /lib64/libdl-2.12.so
383c602000-383c603000 r--p 00002000 08:01 1321962 /lib64/libdl-2.12.so
383c603000-383c604000 rw-p 00003000 08:01 1321962 /lib64/libdl-2.12.so
383c800000-383c815000 r-xp 00000000 08:01 1321964 /lib64/libz.so.1.2.3
383c815000-383ca14000 ---p 00015000 08:01 1321964 /lib64/libz.so.1.2.3
383ca14000-383ca15000 r--p 00014000 08:01 1321964 /lib64/libz.so.1.2.3
383ca15000-383ca16000 rw-p 00015000 08:01 1321964 /lib64/libz.so.1.2.3
383cc00000-383cc07000 r-xp 00000000 08:01 1321958 /lib64/librt-2.12.so
383cc07000-383ce06000 ---p 00007000 08:01 1321958 /lib64/librt-2.12.so
383ce06000-383ce07000 r--p 00006000 08:01 1321958 /lib64/librt-2.12.so
383ce07000-383ce08000 rw-p 00007000 08:01 1321958 /lib64/librt-2.12.so
383d000000-383d083000 r-xp 00000000 08:01 1321955 /lib64/libm-2.12.so
383d083000-383d282000 ---p 00083000 08:01 1321955 /lib64/libm-2.12.so
383d282000-383d283000 r--p 00082000 08:01 1321955 /lib64/libm-2.12.so
383d283000-383d284000 rw-p 00083000 08:01 1321955 /lib64/libm-2.12.so
383d400000-383d41d000 r-xp 00000000 08:01 1321965 /lib64/libselinux.so.1
383d41d000-383d61c000 ---p 0001d000 08:01 1321965 /lib64/libselinux.so.1
383d61c000-383d61d000 r--p 0001c000 08:01 1321965 /lib64/libselinux.so.1
383d61d000-383d61e000 rw-p 0001d000 08:01 1321965 /lib64/libselinux.so.1
383d61e000-383d61f000 rw-p 00000000 00:00 0
383dc00000-383dc16000 r-xp 00000000 08:01 1318675 /lib64/libresolv-2.12.so
383dc16000-383de16000 ---p 00016000 08:01 1318675 /lib64/libresolv-2.12.so
383de16000-383de17000 r--p 00016000 08:01 1318675 /lib64/libresolv-2.12.so
383de17000-383de18000 rw-p 00017000 08:01 1318675 /lib64/libresolv-2.12.so
383de18000-383de1a000 rw-p 00000000 00:00 0
383e000000-383e032000 r-xp 00000000 08:01 1311013 /lib64/libidn.so.11.6.1
383e032000-383e231000 ---p 00032000 08:01 1311013 /lib64/libidn.so.11.6.1
383e231000-383e232000 rw-p 00031000 08:01 1311013 /lib64/libidn.so.11.6.1
383ec00000-383ec16000 r-xp 00000000 08:01 1321956 /lib64/libgcc_s-4.4.7-20120601.so.1
383ec16000-383ee15000 ---p 00016000 08:01 1321956 /lib64/libgcc_s-4.4.7-20120601.so.1
383ee15000-383ee16000 rw-p 00015000 08:01 1321956 /lib64/libgcc_s-4.4.7-20120601.so.1
383f000000-383f0e8000 r-xp 00000000 08:01 791378 /usr/lib64/libstdc++.so.6.0.13
383f0e8000-383f2e8000 ---p 000e8000 08:01 791378 /usr/lib64/libstdc++.so.6.0.13
383f2e8000-383f2ef000 r--p 000e8000 08:01 791378 /usr/lib64/libstdc++.so.6.0.13
383f2ef000-383f2f1000 rw-p 000ef000 08:01 791378 /usr/lib64/libstdc++.so.6.0.13
383f2f1000-383f306000 rw-p 00000000 00:00 0
383f800000-383f898000 r-xp 00000000 08:01 787710 /usr/lib64/libfreetype.so.6.3.22
383f898000-383fa97000 ---p 00098000 08:01 787710 /usr/lib64/libfreetype.so.6.3.22
383fa97000-383fa9d000 rw-p 00097000 08:01 787710 /usr/lib64/libfreetype.so.6.3.22
383fc00000-383fc34000 r-xp 00000000 08:01 785923 /usr/lib64/libfontconfig.so.1.4.4
383fc34000-383fe34000 ---p 00034000 08:01 785923 /usr/lib64/libfontconfig.so.1.4.4
383fe34000-383fe36000 rw-p 00034000 08:01 785923 /usr/lib64/libfontconfig.so.1.4.4
3840400000-3840537000 r-xp 00000000 08:01 786097 /usr/lib64/libX11.so.6.3.0
3840537000-3840737000 ---p 00137000 08:01 786097 /usr/lib64/libX11.so.6.3.0
3840737000-384073d000 rw-p 00137000 08:01 786097 /usr/lib64/libX11.so.6.3.0
3840c00000-3840c03000 r-xp 00000000 08:01 1321985 /lib64/libcom_err.so.2.1
3840c03000-3840e02000 ---p 00003000 08:01 1321985 /lib64/libcom_err.so.2.1
3840e02000-3840e03000 r--p 00002000 08:01 1321985 /lib64/libcom_err.so.2.1
3840e03000-3840e04000 rw-p 00003000 08:01 1321985 /lib64/libcom_err.so.2.1
3841000000-384101d000 r-xp 00000000 08:01 786000 /usr/lib64/libxcb.so.1.1.0Abort (core dumped)
[chdavid at flashflood tmp]$
[chdavid at flashflood tmp]$ ng4ex xy01n -clean
NCAR Graphics NCL Example <xy01n>
Copying xy01n.ncl
Copying xy01.res
Running NCL...
Copyright (C) 1995-2014 - All Rights Reserved
University Corporation for Atmospheric Research
NCAR Command Language Version 6.2.1
The use of this software is governed by a License Agreement.
See http://www.ncl.ucar.edu/ for more details.
GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
--X driver error: DISPLAY environment variable not set
GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
--SPECIFIED WORKSTATION IS NOT OPEN
fatal:Workstation with PID#8 is not open
fatal:Unable to open Workstation-Can't Create
fatal:Unable to access object with id:-4
fatal:_NhlCreate:Invalid Parent id #-4
fatal:NhlDraw: Invalid Layer Id: -4
fatal:Unable to update Workstation with PID#-4
fatal:Unable to clear Workstation with PID#-4
fatal:["Execute.c":8576]:Execute: Error occurred at or near line 137
Finished running 'ncl < xy01n'...
[chdavid at flashflood tmp]$
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mailman.ucar.edu/pipermail/ncl-install/attachments/20141018/7bddcbe6/attachment-0001.html
More information about the ncl-install
mailing list