[ncl-install] Compilation error in NclNetCdf.c

[Matthieu Lafaysse]

Fixed !
Thank you,

Matthieu

Le mercredi 25 mai 2011 à 10:00 -0600, Wei Huang a écrit :
> 
> 
> Matthieu Lafaysse,
> 
> 
> To fix is this:
> 
> 
> Edit NclNetCdf.c, and for each function:
> NetAddVarChunk, NetAddVarChunkCache, NetSetVarCompressLevel
> 
> 
> make them look like:
> 
> 
> functype funcname(....)
> {
>         some declarations;
> 
> 
> #ifdef USE_NETCDF4
> ..... //real code here
> #endif
> 
> 
>         return functype;
> }
> 
> 
> Which make them (near-)empty functions.
> 
> 
> After these changes, please re-compile.
> 
> 
> Regards,
> 
> 
> Wei
> 
> 
> 
> On May 25, 2011, at 8:58 AM, Mary Haley wrote:
> 
> > Hi Wei,
> > 
> > 
> > Isn't this the bug that you fixed? Is it a simple enough fix that he
> > could apply it to the code and then restarting the build?
> > 
> > 
> > --Mary
> > 
> > 
> > Begin forwarded message:
> > 
> > > From: matthieu.lafaysse at ujf-grenoble.fr
> > > 
> > > Date: May 25, 2011 1:29:50 AM MDT
> > > 
> > > To: ncl-install at ucar.edu
> > > 
> > > Subject: [ncl-install] Compilation error in NclNetCdf.c
> > > 
> > > Reply-To: matthieu.lafaysse at ujf-grenoble.fr
> > > 
> > > 
> > > Hello,
> > > 
> > > I am trying to install ncl on a SUSE Linux 10 SP3 (x86_64).
> > > 
> > > As the available binaries do not work on this system, I am trying
> > > to
> > > compile from sources.
> > > 
> > > I compiled successfully netcdf without netcdf-4 support and
> > > without
> > > OPeNDAP support.
> > > 
> > > In the NCL configure script, I only ask for a Udunits-2 support
> > > and I
> > > answered no to all other questions :
> > > 
> > > Build NCL (y)?  : y
> > > Build cairo support (optional) into GKS library? n
> > > Build HDF-4 support (optional) into raster library? n
> > > Did you build HDF-4 with szip support? n
> > > Build Triangle support (optional) into NCL n
> > > If you are using NetCDF V4.x, did you enable NetCDF-4 support (y)?
> > > n Did
> > > you build NetCDF with OPeNDAP support (y)? n
> > > Build GDAL support (optional) into NCL? (n) n
> > > Build Udunits-2 support (optional) into NCL (y) y
> > > Build Vis5d+ support (optional) into NCL (y) n
> > > Build HDF-EOS2 support (optional) into NCL (y) n
> > > Build HDF-EOS5 support (optional) into NCL (y) n
> > > Build GRIB2 support (optional) into NCL (y) n
> > > 
> > > Although I did not ask for HDF-4 support, I have errors if I do
> > > not
> > > provide HDF 4 libraries.
> > > 
> > > If I provide netcdf and HDF 4 libraries, I have undefined
> > > references
> > > errors during ncl compilation :
> > > 
> > > NclNetCdf.o: dans la fonction « NetSetVarCompressLevel »:
> > > NclNetCdf.c:(.text+0x1748): référence indéfinie vers «
> > > nc_def_var_deflate »
> > > NclNetCdf.o: dans la fonction « NetAddVarChunkCache »:
> > > NclNetCdf.c:(.text+0x191b): référence indéfinie vers «
> > > nc_set_var_chunk_cache »
> > > NclNetCdf.o: dans la fonction « NetAddVarChunk »:
> > > NclNetCdf.c:(.text+0x1aa3): référence indéfinie vers «
> > > nc_def_var_chunking »
> > > 
> > > When I look for help on the web, it looks like netcdf-4 errors
> > > although I
> > > didn't ask for netcdf-4 support.
> > > 
> > > Is it normal ? Please could you help me to fix this problem ?
> > > 
> > > These errors occurred after the following command in the
> > > Makefile :
> > > 
> > > gcc -ansi -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> > > -I/usr/local/include -O  -rdynamic   -o ncl Ncl.o io.o NclHLUObj.o
> > > scanner.o parser.o MathFuncs.o NclTypedouble.o NclTypefloat.o
> > > NclTypeint.o NclTypelogical.o NclTypelong.o NclTypeobj.o
> > > NclTypeshort.o
> > > NclTypestring.o NclTypeint64.o NclTypeuint64.o NclTypeubyte.o
> > > NclTypeushort.o NclTypeuint.o NclTypeulong.o NclTypebyte.o
> > > NclTypechar.o
> > > TypeSupport.o NclMultiDValData.o AddFileFormats.o AttSupport.o
> > > DataSupport.o FileSupport.o Formats.o GetGrids.o InitData.o
> > > Memory.o
> > > NclAtt.o NclCCM.o NclCoordVar.o NclData.o NclGroup.o NclFile.o
> > > NclFileVar.o NclGRIB.o NclMultiDValnclfileData.o NclNetCdf.o
> > > NclOneDValCoordData.o NclType.o NclTypelist.o NclVar.o
> > > VarSupport.o
> > > ctoiee.o date.o qu2reg3.o rowina3.o scm0.o ncepcode.o
> > > AddBuiltIns.o AddHLUObjs.o AddIntrinsics.o Execute.o Machine.o
> > > OpsFuncs.o Printtoken.o SrcTree.o Symbol.o Translate.o
> > >  NclHLUVar.o
> > > HLUSupport.o NclMultiDValHLUObjData.o BuiltInSupport.o
> > > BuiltInFuncs.o
> > > javaAddProto.o javaAddFuncs.o userAddProto.o userAddFuncs.o
> > > HLUFunctions.o yywrap.o craybin.o complete.o editline.o sysunix.o
> > > ListSupport.o NclList.o NclMultiDVallistData.o fortranio.o
> > > -L../../.././ni/src/lib/nfp -lnfp -L../../.././ni/src/lib/nfpfort
> > > -lnfpfort -L../../.././ni/src/lib/hlu -lhlu
> > > -L../../.././ncarg2d/src/libncarg -lncarg
> > > -L../../.././ncarg2d/src/libncarg_gks -lncarg_gks
> > > -L../../.././common/src/libncarg_c -lncarg_c
> > > -L../../.././ngmath/src/lib
> > > -lngmath -L/home/ciment/lafaysse/ncl/lib -L/usr/X11R6/lib64
> > > -L/usr/X11R6/lib -L/applis/ciment/stow/1/jpeg-6b/lib
> > > -L/applis/ciment/stow/1/zlib-1.2.5/lib
> > > -L/home/ciment/lafaysse/netcdf/lib
> > > -L/applis/ciment/stow/1/hdf5-1.8.4-patch1/lib
> > > -L/applis/ciment/stow/1/udunits-2.1.21/lib
> > > -L/applis/ciment/stow/1/libpng-1.5.1/lib
> > > -L/applis/ciment/stow/1/hdf-4.2.5/lib
> > > -L/applis/ciment/stow/1/szip-2.1/lib -lnetcdf        -ludunits2
> > > -lexpat
> > > -lpng -lz  -L../../.././external/sphere3.1_dp -lsphere3.1_dp
> > > -L../../.././external/fftpack5_dp -lfftpack5_dp
> > > -L../../.././external/lapack -llapack_ncl
> > > -L../../.././external/blas
> > > -lblas_ncl -lX11 -lXext -lgfortran -lm  -ldl
> > > 
> > > Are netcdf-4 / hdf4 / hdf5 really optional ?
> > > I just need the basics of NCL (+ udunits functions) that's why I
> > > am trying
> > > to compile in the more simple way.
> > > 
> > > Thank you for your help,
> > > 
> > > Bests regards
> > > Matthieu Lafaysse
> > > 
> > > 
> > > 
> > > 
> > > _______________________________________________
> > > ncl-install mailing list
> > > List instructions, subscriber options, unsubscribe:
> > > http://mailman.ucar.edu/mailman/listinfo/ncl-install
> > > 
> > 
> > 
>