[ncl-install] Fwd: Re: [Fwd: Golden]
Mary Haley
haley at ucar.edu
Wed May 13 14:20:56 MDT 2009
Hi Greg,
By default, when you use gfortran, NCAR Graphics will be compiled with
underscores appended after Fortran routine names.
You would have to explicitly add "-fno-underscoring" to the FcOptions
line in $NCARG/config/LINUX file before running "make Everything"
in order to disable this.
If you didn't compile NCAR Graphics with -fno-underscoring,
then have you tried removing this option from your own compile
line?
gfortran -fPIC -fno-f2c -O qgpvx.varc.AM.f
-L/usr/local/ncl_ncarg-5.1.0DaP/lib -L/usr/lib64 -lncarg -lncarg_gks
-lncarg_c -lX11 -lXext -lpng -lz
As a side, exactly what does the following echo back:
nm /usr/local/ncl_ncarg-5.1.0DaP/lib/libncarg.a | grep plchhq
nm /usr/local/ncl_ncarg-5.1.0DaP/lib/libncarg.a | grep cpezct
?
--Mary
On Wed, 13 May 2009, Gregory S. Duane wrote:
> To whom it may concern:
>
> We are having trouble installing NCAR Graphics in a linux
> enviroment at U. Miami, as per the following email, even
> though the software indicates successful installation.
>
> More about the envrionment: It is x86_64 and I believe
> the version information is contained in
> "2.6.22.19-0.1-default #1 SMP"
>
> The error messages in compilation are listed below.
>
> Please advise if you can. Thanks.
>
> Greg Duane
>
> ---- Original message ----
>> Date: Tue, 12 May 2009 16:36:08 -0400
>> From: Robert Burgman <rburgman at rsmas.miami.edu>
>> Subject: Re: [Fwd: Golden]
>> To: "Gregory S. Duane" <Gregory.Duane at Colorado.EDU>
>>
>> Hi Greg,
>>
>> I am not having much luck compiling the code beyond these changes.
>> I am using gfortran for the compilation.
>> I am using the option -fno-underscoring, this reduces the errors
>> significantly
>> Libraries you were calling in /usr/X11R6/lib64 are found in /usr/lib64
>>
>> so i am calling
>>
>> gfortran -fPIC -fno-f2c -fno-underscoring -O qgpvx.varc.AM.f -L/usr/
>> local/ncl_ncarg-5.1.0DaP/lib -L/usr/lib64 -lncarg -lncarg_gks -
>> lncarg_c -lX11 -lXext -lpng -lz
>>
>>
>> and am given the following errors.
>>
>>
>> /tmp/cc495DN9.o: In function `pltcs':
>> qgpvx.varc.AM.f:(.text+0x8130): undefined reference to `plchhq'
>> qgpvx.varc.AM.f:(.text+0x8160): undefined reference to `cpezct'
>> /tmp/cc495DN9.o: In function `force':
>> qgpvx.varc.AM.f:(.text+0x8c10): undefined reference to `cpezct'
>> /tmp/cc495DN9.o: In function `MAIN__':
>> qgpvx.varc.AM.f:(.text+0xd982): undefined reference to `opngks'
>> qgpvx.varc.AM.f:(.text+0xd99f): undefined reference to `pcseti'
>> qgpvx.varc.AM.f:(.text+0xedc4): undefined reference to `clsgks'
>> collect2: ld returned 1 exit status
>>
>>
>> The "undefined references to 'xxxxxxx'"
>> makes me think there are errors with the underscores. All of these
>> references are in the
>> /usr/local/ncl_ncarg-5.1.0DaP/lib/libncarg.a library.
>>
>>
>>
>> On May 12, 2009, at 10:30 AM, Gregory S. Duane wrote:
>>
>>> Rob:
>>>
>>> I've tried all three of these. I always get "undefined
>>> reference" messages in ld to various NCAR graphics
>>> subroutines. -on my way to U. Miami now -Greg
>>>
>>> ---- Original message ----
>>>> Date: Tue, 12 May 2009 08:33:43 -0400 (EDT)
>>>> From: rburgman at rsmas.miami.edu
>>>> Subject: Re: [Fwd: Golden]
>>>> To: "Gregory S. Duane" <Gregory.Duane at Colorado.EDU>
>>>>
>>>> Hi Duane,
>>>> To complile the fortran code qgpvx.varc.AM.f you can use
>>>>
>>>> /usr/bin/gcc (which includes g77),
>>>>
>>>> /opt/intel/fce/10.1.015/bin/ifort,
>>>>
>>>> or
>>>>
>>>> /usr/bin/gfortran
>>>>
>>>>
>>>>
>>>>> Rob:
>>>>>
>>>>> But how would I actually compile code, such as qgpvx.varc.AM.f
>>>>> in my home directory? When I type ncargf90 qgpvx.varc.AM.f,
>>>>> I get:
>>>>>
>>>>> g77 -fPIC -fno-f2c -fno-second-underscore -O qgpvx.varc.AM.f
>>>>> -L/usr/local/ncl_nc
>>>>> arg-5.1.0DaP/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -
>>>>> lX11
>>>>> -lXext -
>>>>> lpng -lz
>>>>> g77: Command not found.
>>>>>
>>>>> Greg
>>>>>
>>>>> ---- Original message ----
>>>>>> Date: Mon, 11 May 2009 17:39:41 -0400
>>>>>> From: Robert Burgman <rburgman at rsmas.miami.edu>
>>>>>> Subject: Re: [Fwd: Golden]
>>>>>> To: "Gregory S. Duane" <Gregory.Duane at Colorado.EDU>
>>>>>>
>>>>>> HI Greg,
>>>>>> If you set up your path and NCARG_root as seen below you should be
>>>>>> ready to run ncar graphics from you command line.
>>>>>>
>>>>>> For example in .bashrc
>>>>>>
>>>>>> PATH="/usr/local/ncl_ncarg-5.1.0DaP/bin:"
>>>>>>
>>>>>> export NCARG_ROOT=/usr/local/ncl_ncarg-5.1.0DaP;
>>>>>>
>>>>>>
>>>>>>
>>>>>> The .hluresfile is just a preference file, I downloaded the
>>>>>> following
>>>>>> example from the web.
>>>>>>
>>>>>> !=========================================
>>>>>> ! comments for ".res" files are preceded by a "!"
>>>>>> ! remember quotations are not used in .res files
>>>>>>
>>>>>> ! White background/black foreground
>>>>>> *wkForegroundColor : (/0.,0.,0./)
>>>>>> *wkBackgroundColor : (/1.,1.,1./)
>>>>>>
>>>>>> *wkColorMap : rainbow+gray
>>>>>>
>>>>>> ! Font stuff
>>>>>> *Font : helvetica
>>>>>>
>>>>>> ! Function Codes [Default is a colon ]
>>>>>> *TextFuncCode : ~
>>>>>>
>>>>>> ! Make default X11 window larger (adjust as necessary)
>>>>>> *wkWidth : 800
>>>>>> *wkHeight : 800
>>>>>>
>>>>>> ! Have a favorite colormap that you use for everything? You can
>>>>>> ! make it your default here (note the name is NOT in quotes):
>>>>>> ! *wkColorMap : temp1
>>>>>>
>>>>>> ! Increase the default (16mb) contour memory
>>>>>> ! If you gave gridded data > 500 x 500, you may need this
>>>>>> *wsMaximumSize: 32556688
>>>>>> !==========================================
>>>>>>
>>>>>> I don't know if it is necessary or not, you can just copy the text
>>>>>> above into the file and make changes as you wish.
>>>>>>
>>>>>> Hope this helps,
>>>>>> Rob
>>>>>>
>>>>>>
>>>>>>
>>>>>> On May 11, 2009, at 3:17 PM, Gregory S. Duane wrote:
>>>>>>
>>>>>>> Dear Rob:
>>>>>>>
>>>>>>> I assume you are the contact point for this. I am leaving
>>>>>>> for the airport very soon, and may want to work on this
>>>>>>> late this evening, so I thought it might help to ask a few
>>>>>>> simple questions now.
>>>>>>>
>>>>>>> 1) Do I need NCL to run NCAR graphics subroutines?
>>>>>>>
>>>>>>> 2) Could you quickly tell me what NCARG ROOT should be set to?
>>>>>>>
>>>>>>> 3) Do I really need an hluresfile?
>>>>>>>
>>>>>>> Note that I do *not* need access data at NCAR or anywhere
>>>>>>> else. I just to use NCAR graphics subroutines and idt.
>>>>>>> -leaving now. Thanks.
>>>>>>>
>>>>>>> Greg
>>>>>>>
>>>>>>>
>>>>>>> ---- Original message ----
>>>>>>>> Date: Sat, 9 May 2009 07:52:58 -0400 (EDT)
>>>>>>>> From: "Ben Kirtman" <bkirtman at rsmas.miami.edu>
>>>>>>>> Subject: [Fwd: Golden]
>>>>>>>> To: Gregory.Duane at Colorado.EDU
>>>>>>>>
>>>>>>>> I have not look into this yet, so this is all I know. -Ben
>>>>>>>>
>>>>>>>>
>>>>>>>> ---------------------------- Original Message
>>>>>>>> ----------------------------
>>>>>>>> Subject: Golden
>>>>>>>> From: "Robert Burgman" <rburgman at rsmas.miami.edu>
>>>>>>>> Date: Fri, May 8, 2009 3:40 pm
>>>>>>>> To: "Ben Kirtman" <bkirtman at rsmas.miami.edu>
>>>>>>>> --------------------------------------------------------------------------
>>>>>>>>
>>>>>>>> We are in business, he will have to get set up on Pacifix
>>>>>>>> ( paths,
>>>>>>>> preferences etc)
>>>>>>>>
>>>>>>>> software is located in /usr/local/ncl_ncarg-5.1.0DaP/
>>>>>>>>
>>>>>>>>
>>>>>>>> Here is the link for setup.
>>>>>>>>
>>>>>>>> http://www.ncl.ucar.edu/get_started.shtml#SetUpEnvironment
>>>>>>>>
>>>>>>>> We have the OPENDAP version installed so he can access data at
>>>>>>>> NCAR
>>>>>>>> or
>>>>>>>> wherever via URLs.
>>>>>>>>
>>>>>>>>
>>>>>>>> -Rob
>>>>>>>>
>>>>>>>>
>>>>>>>> --------------------------------------------------
>>>>>>>> Robert Burgman
>>>>>>>> Division of Meteorology and Physical Oceanography
>>>>>>>> Rosenstiel School of Marine and Atmospheric Science
>>>>>>>> University of Miami
>>>>>>>> 4600 Rickenbacker Causeway
>>>>>>>> Miami, FL 33149
>>>>>>>>
>>>>>>>> Tel: (305) 421-4272
>>>>>>>> Fax: (305) 421-4696
>>>>>>>> Email: rburgman at rsmas.miami.edu
>>>>>>>> ---------------------------------------------------
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Ben Kirtman
>>>>>>>> Professor of Meteorology and Physical Oceanography
>>>>>>>> Rosenstiel School for Marine and Atmospheric Science
>>>>>>>> University of Miami
>>>>>>>> 4600 Rickenbacker Causeway
>>>>>>>> Miami, Florida 33149-1031
>>>>>>>> Phone: 305-421-4046
>>>>>>>> Fax: 305-421-4696
>>>>>>>>
>>>>>>
>>>>>> --------------------------------------------------
>>>>>> Robert Burgman
>>>>>> Division of Meteorology and Physical Oceanography
>>>>>> Rosenstiel School of Marine and Atmospheric Science
>>>>>> University of Miami
>>>>>> 4600 Rickenbacker Causeway
>>>>>> Miami, FL 33149
>>>>>>
>>>>>> Tel: (305) 421-4272
>>>>>> Fax: (305) 421-4696
>>>>>> Email: rburgman at rsmas.miami.edu
>>>>>> ---------------------------------------------------
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>
>>>>
>>>> ----------------------------------------------------
>>>> Dr. Robert Burgman
>>>> Division of Meteorology and Physical Oceanography
>>>> Rosenstiel School of Marine and Atmospheric Science
>>>> University of Miami MPO, MSC 237
>>>> 4600 Rickenbacker Causeway
>>>> Miami, FL 33149
>>>>
>>>> Tel: (305) 421-4272
>>>> Fax: (305) 421-4696
>>>> Email: rburgman at rsmas.miami.edu
>>>> ---------------------------------------------------
>>>>
>>>>
>>
>> --------------------------------------------------
>> Robert Burgman
>> Division of Meteorology and Physical Oceanography
>> Rosenstiel School of Marine and Atmospheric Science
>> University of Miami
>> 4600 Rickenbacker Causeway
>> Miami, FL 33149
>>
>> Tel: (305) 421-4272
>> Fax: (305) 421-4696
>> Email: rburgman at rsmas.miami.edu
>> ---------------------------------------------------
>>
>>
>>
>>
>>
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