[Met_help] [rt.rap.ucar.edu #100166] History for About MET installation - cmake version in Mac
George McCabe via RT
met_help at ucar.edu
Mon Jul 19 09:36:47 MDT 2021
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hello,
I am trying to install METplus but It says that I need to install NCEPLIBS-BUFR,
I am using the following guide: https://github.com/NOAA-EMC/NCEPLIBS-bufr
In linux, I keep getting an error about cmake version inside NCEPLIBS-BUFR, and I don’t know how to update the version.
CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
CMake 3.15 or higher is required. You are running version 3.13.4
-- Configuring incomplete, errors occurred!
I have also tried to install MET and METPlus in my Mac (BigSur) but I Cann’t. This the error:
zsh: command not found: cmake
Could I get some help?
Thanks.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Wed Jun 09 09:58:33 2021
Hi Yakelyn.
I see that you are having some trouble installing the external
libraries
needed for MET.
I'd like to point you to a script that you can use on a Linux machine
to
install MET and its dependent libraries. Please take a look at the
instructions under "Sample Script For Compiling External Libraries And
MET"
on this page:
https://dtcenter.org/community-code/model-evaluation-tools-
met/download
You shouldn't get the cmake version problem because the tar file for
the
BUFR library does not require using cmake to build.
Please give that a try and let us know how it goes. Please let us
know if
you have any questions about using the script.
Julie
On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
> Transaction: Ticket created by yakelynr at uw.edu
> Queue: met_help
> Subject: About MET installation - cmake version in Mac
> Owner: Nobody
> Requestors: yakelynr at uw.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
>
> Hello,
>
> I am trying to install METplus but It says that I need to install
> NCEPLIBS-BUFR,
> I am using the following guide: https://github.com/NOAA-
EMC/NCEPLIBS-bufr
>
> In linux, I keep getting an error about cmake version inside
> NCEPLIBS-BUFR, and I don’t know how to update the version.
>
> CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
> CMake 3.15 or higher is required. You are running version 3.13.4
>
>
> -- Configuring incomplete, errors occurred!
>
> I have also tried to install MET and METPlus in my Mac (BigSur) but
I
> Cann’t. This the error:
> zsh: command not found: cmake
>
>
>
> Could I get some help?
>
> Thanks.
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #100166] About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 09 10:44:08 2021
Hello,
I think I compiled the example successfully.Do I install METplus in
the same directory?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
> On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu> wrote:
>
> Hi Yakelyn.
>
> I see that you are having some trouble installing the external
libraries
> needed for MET.
>
> I'd like to point you to a script that you can use on a Linux
machine to
> install MET and its dependent libraries. Please take a look at the
> instructions under "Sample Script For Compiling External Libraries
And MET"
> on this page:
> https://dtcenter.org/community-code/model-evaluation-tools-
met/download
>
> You shouldn't get the cmake version problem because the tar file for
the
> BUFR library does not require using cmake to build.
>
> Please give that a try and let us know how it goes. Please let us
know if
> you have any questions about using the script.
>
> Julie
>
>
> On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu> wrote:
>
>>
>> Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
>> Transaction: Ticket created by yakelynr at uw.edu
>> Queue: met_help
>> Subject: About MET installation - cmake version in Mac
>> Owner: Nobody
>> Requestors: yakelynr at uw.edu
>> Status: new
>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>>
>> Hello,
>>
>> I am trying to install METplus but It says that I need to install
>> NCEPLIBS-BUFR,
>> I am using the following guide: https://github.com/NOAA-
EMC/NCEPLIBS-bufr
>>
>> In linux, I keep getting an error about cmake version inside
>> NCEPLIBS-BUFR, and I don’t know how to update the version.
>>
>> CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
>> CMake 3.15 or higher is required. You are running version 3.13.4
>>
>>
>> -- Configuring incomplete, errors occurred!
>>
>> I have also tried to install MET and METPlus in my Mac (BigSur) but
I
>> Cann’t. This the error:
>> zsh: command not found: cmake
>>
>>
>>
>> Could I get some help?
>>
>> Thanks.
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>>
>>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Wed Jun 09 11:29:30 2021
Great! Please let us know if you encounter any issues. I'm also
happy to
take a look at your make.log and make_test.log file if you'd like to
pass
those along.
I typically install and would recommend installing METplus at the same
level as MET. For example:
/d1/jpresto/met
/d1/jpresto/METplus
I hope that helps!
Julie
On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello,
>
> I think I compiled the example successfully.Do I install METplus in
the
> same directory?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> > On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu>
> wrote:
> >
> > Hi Yakelyn.
> >
> > I see that you are having some trouble installing the external
libraries
> > needed for MET.
> >
> > I'd like to point you to a script that you can use on a Linux
machine to
> > install MET and its dependent libraries. Please take a look at
the
> > instructions under "Sample Script For Compiling External Libraries
And
> MET"
> > on this page:
> > https://dtcenter.org/community-code/model-evaluation-tools-
met/download
> >
> > You shouldn't get the cmake version problem because the tar file
for the
> > BUFR library does not require using cmake to build.
> >
> > Please give that a try and let us know how it goes. Please let us
know
> if
> > you have any questions about using the script.
> >
> > Julie
> >
> >
> > On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
> > met_help at ucar.edu> wrote:
> >
> >>
> >> Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
> >> Transaction: Ticket created by yakelynr at uw.edu
> >> Queue: met_help
> >> Subject: About MET installation - cmake version in Mac
> >> Owner: Nobody
> >> Requestors: yakelynr at uw.edu
> >> Status: new
> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
> >>
> >>
> >> Hello,
> >>
> >> I am trying to install METplus but It says that I need to install
> >> NCEPLIBS-BUFR,
> >> I am using the following guide:
> https://github.com/NOAA-EMC/NCEPLIBS-bufr
> >>
> >> In linux, I keep getting an error about cmake version inside
> >> NCEPLIBS-BUFR, and I don’t know how to update the version.
> >>
> >> CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
> >> CMake 3.15 or higher is required. You are running version
3.13.4
> >>
> >>
> >> -- Configuring incomplete, errors occurred!
> >>
> >> I have also tried to install MET and METPlus in my Mac (BigSur)
but I
> >> Cann’t. This the error:
> >> zsh: command not found: cmake
> >>
> >>
> >>
> >> Could I get some help?
> >>
> >> Thanks.
> >> Yakelyn R. Jauregui
> >>
> >> Graduate Student
> >> Department of Atmospheric Sciences
> >> 319, ATG Building
> >> Seattle, WA 98195-1640
> >>
> >>
> >>
> >
> > --
> > Julie Prestopnik (she/her)
> > Software Engineer
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Email: jpresto at ucar.edu
> >
> > My working day may not be your working day. Please do not feel
obliged
> to
> > reply to this email outside of your normal working hours.
> >
>
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 09 11:36:05 2021
Ohh. I have realized that it didn’t generated the log files meaning it
didn’t compiled it, right?
This is the last line when I run ./compile_MET_all.sh
install_met_env.orca
configure returned with non-zero (77) status
Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 10:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Great! Please let us know if you encounter any issues. I'm also
happy to
take a look at your make.log and make_test.log file if you'd like to
pass
those along.
I typically install and would recommend installing METplus at the same
level as MET. For example:
/d1/jpresto/met
/d1/jpresto/METplus
I hope that helps!
Julie
On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello,
I think I compiled the example successfully.Do I install METplus in
the
same directory?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>>
wrote:
Hi Yakelyn.
I see that you are having some trouble installing the external
libraries
needed for MET.
I'd like to point you to a script that you can use on a Linux machine
to
install MET and its dependent libraries. Please take a look at the
instructions under "Sample Script For Compiling External Libraries And
MET"
on this page:
https://dtcenter.org/community-code/model-evaluation-tools-
met/download
You shouldn't get the cmake version problem because the tar file for
the
BUFR library does not require using cmake to build.
Please give that a try and let us know how it goes. Please let us
know
if
you have any questions about using the script.
Julie
On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
Transaction: Ticket created by yakelynr at uw.edu<mailto:yakelynr at uw.edu>
Queue: met_help
Subject: About MET installation - cmake version in Mac
Owner: Nobody
Requestors: yakelynr at uw.edu<mailto:yakelynr at uw.edu>
Status: new
Ticket <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166
>
Hello,
I am trying to install METplus but It says that I need to install
NCEPLIBS-BUFR,
I am using the following guide:
https://github.com/NOAA-EMC/NCEPLIBS-bufr
In linux, I keep getting an error about cmake version inside
NCEPLIBS-BUFR, and I don’t know how to update the version.
CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
CMake 3.15 or higher is required. You are running version 3.13.4
-- Configuring incomplete, errors occurred!
I have also tried to install MET and METPlus in my Mac (BigSur) but I
Cann’t. This the error:
zsh: command not found: cmake
Could I get some help?
Thanks.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged
to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 09 11:41:17 2021
This is my install_met_env.orca file:
export TEST_BASE=/home/orca/yakelynr/programs/MET/MET_testing
export COMPILER=intel
export MET_SUBDIR=${TEST_BASE}
export MET_TARBALL=met-10.0.0.20210510.tar.gz
export USE_MODULES=FALSE
export PYTHON_LOC=/home/disk/p/yakelynr/anaconda3/bin
export MET_PYTHON=${PYTHON_LOC}/python-3.7.3
export MET_PYTHON_LD=-L${PYTHON_LOC}/python-3.7.3/lib\ -lpython3.7m\
-lcrypt\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
export MET_PYTHON_CC=-I${PYTHON_LOC}/python-3.7.3/include/python3.7m
export SET_D64BIT=True
export CFLAGS="-Wall -g"
export CXXFLAGS="-Wall -g"
#If you've already compiled these and don't need to compile them
again, set the following
export
EXTERNAL_LIBS=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
export GRIB2CLIB_NAME=-lgrib2c
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
export MET_NETCDF=${EXTERNAL_LIBS}/lib
# Also, don't forget to set the following options to zero within the
compile script if you've already compiled those libraries as well:
COMPILE_GSL, COMPILE_HDF, COMPILE_HDFEOS, COMPILE_CAIRO,
COMPILE_FREETYPE
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 10:35 AM, Yakelyn Ramos Jauregui
<yakelynr at uw.edu<mailto:yakelynr at uw.edu>> wrote:
Ohh. I have realized that it didn’t generated the log files meaning it
didn’t compiled it, right?
This is the last line when I run ./compile_MET_all.sh
install_met_env.orca
configure returned with non-zero (77) status
Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 10:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Great! Please let us know if you encounter any issues. I'm also
happy to
take a look at your make.log and make_test.log file if you'd like to
pass
those along.
I typically install and would recommend installing METplus at the same
level as MET. For example:
/d1/jpresto/met
/d1/jpresto/METplus
I hope that helps!
Julie
On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello,
I think I compiled the example successfully.Do I install METplus in
the
same directory?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>>
wrote:
Hi Yakelyn.
I see that you are having some trouble installing the external
libraries
needed for MET.
I'd like to point you to a script that you can use on a Linux machine
to
install MET and its dependent libraries. Please take a look at the
instructions under "Sample Script For Compiling External Libraries And
MET"
on this page:
https://dtcenter.org/community-code/model-evaluation-tools-
met/download
You shouldn't get the cmake version problem because the tar file for
the
BUFR library does not require using cmake to build.
Please give that a try and let us know how it goes. Please let us
know
if
you have any questions about using the script.
Julie
On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
Transaction: Ticket created by yakelynr at uw.edu<mailto:yakelynr at uw.edu>
Queue: met_help
Subject: About MET installation - cmake version in Mac
Owner: Nobody
Requestors: yakelynr at uw.edu<mailto:yakelynr at uw.edu>
Status: new
Ticket <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166
>
Hello,
I am trying to install METplus but It says that I need to install
NCEPLIBS-BUFR,
I am using the following guide:
https://github.com/NOAA-EMC/NCEPLIBS-bufr
In linux, I keep getting an error about cmake version inside
NCEPLIBS-BUFR, and I don’t know how to update the version.
CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
CMake 3.15 or higher is required. You are running version 3.13.4
-- Configuring incomplete, errors occurred!
I have also tried to install MET and METPlus in my Mac (BigSur) but I
Cann’t. This the error:
zsh: command not found: cmake
Could I get some help?
Thanks.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged
to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Wed Jun 09 11:41:19 2021
Right. It looks like the installation was unsuccessful. Could you
please
send all of the screen output from running "./compile_MET_all.sh
install_met_env.orca", and the install_met_env.orca file? Also, if
you
have a config.log file for MET, it would be great if you could pass
that
along too. Thanks!
Julie
On Wed, Jun 9, 2021 at 11:36 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Ohh. I have realized that it didn’t generated the log files meaning
it
> didn’t compiled it, right?
> This is the last line when I run ./compile_MET_all.sh
install_met_env.orca
>
> configure returned with non-zero (77) status
>
> Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 10:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Great! Please let us know if you encounter any issues. I'm also
happy to
> take a look at your make.log and make_test.log file if you'd like to
pass
> those along.
>
> I typically install and would recommend installing METplus at the
same
> level as MET. For example:
> /d1/jpresto/met
> /d1/jpresto/METplus
>
> I hope that helps!
>
> Julie
>
>
>
> On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello,
>
> I think I compiled the example successfully.Do I install METplus in
the
> same directory?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
> Hi Yakelyn.
>
> I see that you are having some trouble installing the external
libraries
> needed for MET.
>
> I'd like to point you to a script that you can use on a Linux
machine to
> install MET and its dependent libraries. Please take a look at the
> instructions under "Sample Script For Compiling External Libraries
And
> MET"
> on this page:
> https://dtcenter.org/community-code/model-evaluation-tools-
met/download
>
> You shouldn't get the cmake version problem because the tar file for
the
> BUFR library does not require using cmake to build.
>
> Please give that a try and let us know how it goes. Please let us
know
> if
> you have any questions about using the script.
>
> Julie
>
>
> On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
> Transaction: Ticket created by
yakelynr at uw.edu<mailto:yakelynr at uw.edu>
> Queue: met_help
> Subject: About MET installation - cmake version in Mac
> Owner: Nobody
> Requestors: yakelynr at uw.edu<mailto:yakelynr at uw.edu>
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
>
> Hello,
>
> I am trying to install METplus but It says that I need to install
> NCEPLIBS-BUFR,
> I am using the following guide:
> https://github.com/NOAA-EMC/NCEPLIBS-bufr
>
> In linux, I keep getting an error about cmake version inside
> NCEPLIBS-BUFR, and I don’t know how to update the version.
>
> CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
> CMake 3.15 or higher is required. You are running version 3.13.4
>
>
> -- Configuring incomplete, errors occurred!
>
> I have also tried to install MET and METPlus in my Mac (BigSur) but
I
> Cann’t. This the error:
> zsh: command not found: cmake
>
>
>
> Could I get some help?
>
> Thanks.
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu
>
> My working day may not be your working day. Please do not feel
obliged
> to
> reply to this email outside of your normal working hours.
>
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 09 11:52:11 2021
Thanks,
See attached.
[cid:006894e1-1cbd-47a8-b97c-0880f38b3c26 at namprd08.prod.outlook.com]
[cid:1778a0c2-cbfd-48f5-9f09-6e1bcaca952a at namprd08.prod.outlook.com]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 10:41 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Right. It looks like the installation was unsuccessful. Could you
please
send all of the screen output from running "./compile_MET_all.sh
install_met_env.orca", and the install_met_env.orca file? Also, if
you
have a config.log file for MET, it would be great if you could pass
that
along too. Thanks!
Julie
On Wed, Jun 9, 2021 at 11:36 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Ohh. I have realized that it didn’t generated the log files meaning it
didn’t compiled it, right?
This is the last line when I run ./compile_MET_all.sh
install_met_env.orca
configure returned with non-zero (77) status
Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 10:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Great! Please let us know if you encounter any issues. I'm also
happy to
take a look at your make.log and make_test.log file if you'd like to
pass
those along.
I typically install and would recommend installing METplus at the same
level as MET. For example:
/d1/jpresto/met
/d1/jpresto/METplus
I hope that helps!
Julie
On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello,
I think I compiled the example successfully.Do I install METplus in
the
same directory?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>>
wrote:
Hi Yakelyn.
I see that you are having some trouble installing the external
libraries
needed for MET.
I'd like to point you to a script that you can use on a Linux machine
to
install MET and its dependent libraries. Please take a look at the
instructions under "Sample Script For Compiling External Libraries And
MET"
on this page:
https://dtcenter.org/community-code/model-evaluation-tools-
met/download
You shouldn't get the cmake version problem because the tar file for
the
BUFR library does not require using cmake to build.
Please give that a try and let us know how it goes. Please let us
know
if
you have any questions about using the script.
Julie
On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
Transaction: Ticket created by
yakelynr at uw.edu<mailto:yakelynr at uw.edu><mailto:yakelynr at uw.edu>
Queue: met_help
Subject: About MET installation - cmake version in Mac
Owner: Nobody
Requestors:
yakelynr at uw.edu<mailto:yakelynr at uw.edu><mailto:yakelynr at uw.edu>
Status: new
Ticket <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166
>
Hello,
I am trying to install METplus but It says that I need to install
NCEPLIBS-BUFR,
I am using the following guide:
https://github.com/NOAA-EMC/NCEPLIBS-bufr
In linux, I keep getting an error about cmake version inside
NCEPLIBS-BUFR, and I don’t know how to update the version.
CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
CMake 3.15 or higher is required. You are running version 3.13.4
-- Configuring incomplete, errors occurred!
I have also tried to install MET and METPlus in my Mac (BigSur) but I
Cann’t. This the error:
zsh: command not found: cmake
Could I get some help?
Thanks.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged
to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Wed Jun 09 12:29:23 2021
Thank you for sending the output and these files along. From the
screen
output, I can see that only the GSL library was installed.
Because you have the following variables set in your
install_met_env.orca
file, the GRIB2C and BUFRLIB libraries will not be compiled:
MET_GRIB2CLIB
MET_GRIB2CINC
GRIB2CLIB_NAME
MET_BUFRLIB
BUFRLIB_NAME
MET_NETCDF
As the comment in the install_met_env file indicates, you only want to
list
those variables if those libraries were already installed:
> #If you've already compiled these and don't need to compile them
again,
> set the following
I have attached a new install_met_env.orca file for you, with those
variables commented out, and I have added MET_GSL since that has
already
been installed, so that you won't have to recompile that library.
Please try running ""./compile_MET_all.sh install_met_env.orca_new"
and let
us know how it goes.
Julie
On Wed, Jun 9, 2021 at 11:52 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thanks,
>
> See attached.
>
> [cid:006894e1-1cbd-47a8-b97c-0880f38b3c26 at namprd08.prod.outlook.com]
> [cid:1778a0c2-cbfd-48f5-9f09-6e1bcaca952a at namprd08.prod.outlook.com]
>
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 10:41 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Right. It looks like the installation was unsuccessful. Could you
please
> send all of the screen output from running "./compile_MET_all.sh
> install_met_env.orca", and the install_met_env.orca file? Also, if
you
> have a config.log file for MET, it would be great if you could pass
that
> along too. Thanks!
>
> Julie
>
> On Wed, Jun 9, 2021 at 11:36 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Ohh. I have realized that it didn’t generated the log files meaning
it
> didn’t compiled it, right?
> This is the last line when I run ./compile_MET_all.sh
install_met_env.orca
>
> configure returned with non-zero (77) status
>
> Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 10:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Great! Please let us know if you encounter any issues. I'm also
happy to
> take a look at your make.log and make_test.log file if you'd like to
pass
> those along.
>
> I typically install and would recommend installing METplus at the
same
> level as MET. For example:
> /d1/jpresto/met
> /d1/jpresto/METplus
>
> I hope that helps!
>
> Julie
>
>
>
> On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello,
>
> I think I compiled the example successfully.Do I install METplus in
the
> same directory?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>>
> wrote:
>
> Hi Yakelyn.
>
> I see that you are having some trouble installing the external
libraries
> needed for MET.
>
> I'd like to point you to a script that you can use on a Linux
machine to
> install MET and its dependent libraries. Please take a look at the
> instructions under "Sample Script For Compiling External Libraries
And
> MET"
> on this page:
> https://dtcenter.org/community-code/model-evaluation-tools-
met/download
>
> You shouldn't get the cmake version problem because the tar file for
the
> BUFR library does not require using cmake to build.
>
> Please give that a try and let us know how it goes. Please let us
know
> if
> you have any questions about using the script.
>
> Julie
>
>
> On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
> Transaction: Ticket created by
yakelynr at uw.edu<mailto:yakelynr at uw.edu
> ><mailto:yakelynr at uw.edu>
> Queue: met_help
> Subject: About MET installation - cmake version in Mac
> Owner: Nobody
> Requestors:
yakelynr at uw.edu<mailto:yakelynr at uw.edu><mailto:yakelynr at uw.edu
> >
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
>
> Hello,
>
> I am trying to install METplus but It says that I need to install
> NCEPLIBS-BUFR,
> I am using the following guide:
> https://github.com/NOAA-EMC/NCEPLIBS-bufr
>
> In linux, I keep getting an error about cmake version inside
> NCEPLIBS-BUFR, and I don’t know how to update the version.
>
> CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
> CMake 3.15 or higher is required. You are running version 3.13.4
>
>
> -- Configuring incomplete, errors occurred!
>
> I have also tried to install MET and METPlus in my Mac (BigSur) but
I
> Cann’t. This the error:
> zsh: command not found: cmake
>
>
>
> Could I get some help?
>
> Thanks.
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu
>
> My working day may not be your working day. Please do not feel
obliged
> to
> reply to this email outside of your normal working hours.
>
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 09 12:40:17 2021
Hello again,
I tried to compile again but I got the same error as shown below.
[cid:1D28693E-AA46-488D-8BC5-546553573533]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Thank you for sending the output and these files along. From the
screen
output, I can see that only the GSL library was installed.
Because you have the following variables set in your
install_met_env.orca
file, the GRIB2C and BUFRLIB libraries will not be compiled:
MET_GRIB2CLIB
MET_GRIB2CINC
GRIB2CLIB_NAME
MET_BUFRLIB
BUFRLIB_NAME
MET_NETCDF
As the comment in the install_met_env file indicates, you only want to
list
those variables if those libraries were already installed:
#If you've already compiled these and don't need to compile them
again,
set the following
I have attached a new install_met_env.orca file for you, with those
variables commented out, and I have added MET_GSL since that has
already
been installed, so that you won't have to recompile that library.
Please try running ""./compile_MET_all.sh install_met_env.orca_new"
and let
us know how it goes.
Julie
On Wed, Jun 9, 2021 at 11:52 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thanks,
See attached.
[cid:006894e1-1cbd-47a8-b97c-0880f38b3c26 at namprd08.prod.outlook.com]
[cid:1778a0c2-cbfd-48f5-9f09-6e1bcaca952a at namprd08.prod.outlook.com]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 10:41 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Right. It looks like the installation was unsuccessful. Could you
please
send all of the screen output from running "./compile_MET_all.sh
install_met_env.orca", and the install_met_env.orca file? Also, if
you
have a config.log file for MET, it would be great if you could pass
that
along too. Thanks!
Julie
On Wed, Jun 9, 2021 at 11:36 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Ohh. I have realized that it didn’t generated the log files meaning it
didn’t compiled it, right?
This is the last line when I run ./compile_MET_all.sh
install_met_env.orca
configure returned with non-zero (77) status
Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 10:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Great! Please let us know if you encounter any issues. I'm also
happy to
take a look at your make.log and make_test.log file if you'd like to
pass
those along.
I typically install and would recommend installing METplus at the same
level as MET. For example:
/d1/jpresto/met
/d1/jpresto/METplus
I hope that helps!
Julie
On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello,
I think I compiled the example successfully.Do I install METplus in
the
same directory?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>>
wrote:
Hi Yakelyn.
I see that you are having some trouble installing the external
libraries
needed for MET.
I'd like to point you to a script that you can use on a Linux machine
to
install MET and its dependent libraries. Please take a look at the
instructions under "Sample Script For Compiling External Libraries And
MET"
on this page:
https://dtcenter.org/community-code/model-evaluation-tools-
met/download
You shouldn't get the cmake version problem because the tar file for
the
BUFR library does not require using cmake to build.
Please give that a try and let us know how it goes. Please let us
know
if
you have any questions about using the script.
Julie
On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
Transaction: Ticket created by
yakelynr at uw.edu<mailto:yakelynr at uw.edu><mailto:yakelynr at uw.edu
<mailto:yakelynr at uw.edu>
Queue: met_help
Subject: About MET installation - cmake version in Mac
Owner: Nobody
Requestors:
yakelynr at uw.edu<mailto:yakelynr at uw.edu><mailto:yakelynr at uw.edu><mailto:yakelynr at uw.edu
Status: new
Ticket <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166
>
Hello,
I am trying to install METplus but It says that I need to install
NCEPLIBS-BUFR,
I am using the following guide:
https://github.com/NOAA-EMC/NCEPLIBS-bufr
In linux, I keep getting an error about cmake version inside
NCEPLIBS-BUFR, and I don’t know how to update the version.
CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
CMake 3.15 or higher is required. You are running version 3.13.4
-- Configuring incomplete, errors occurred!
I have also tried to install MET and METPlus in my Mac (BigSur) but I
Cann’t. This the error:
zsh: command not found: cmake
Could I get some help?
Thanks.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged
to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
<install_met_env.orca_new>
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Wed Jun 09 12:53:59 2021
Thank you! It looks like Jasper library is having trouble compiling.
Could
you please send us the make.log and the config.log from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/jasper-
1.900.1
so that I can try to figure out what the trouble is?
Thanks!
Julie
On Wed, Jun 9, 2021 at 12:40 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello again,
>
> I tried to compile again but I got the same error as shown below.
>
>
> [cid:1D28693E-AA46-488D-8BC5-546553573533]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you for sending the output and these files along. From the
screen
> output, I can see that only the GSL library was installed.
>
> Because you have the following variables set in your
install_met_env.orca
> file, the GRIB2C and BUFRLIB libraries will not be compiled:
> MET_GRIB2CLIB
> MET_GRIB2CINC
> GRIB2CLIB_NAME
> MET_BUFRLIB
> BUFRLIB_NAME
> MET_NETCDF
>
> As the comment in the install_met_env file indicates, you only want
to list
> those variables if those libraries were already installed:
>
> #If you've already compiled these and don't need to compile them
again,
> set the following
>
>
> I have attached a new install_met_env.orca file for you, with those
> variables commented out, and I have added MET_GSL since that has
already
> been installed, so that you won't have to recompile that library.
>
> Please try running ""./compile_MET_all.sh install_met_env.orca_new"
and let
> us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 11:52 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thanks,
>
> See attached.
>
> [cid:006894e1-1cbd-47a8-b97c-0880f38b3c26 at namprd08.prod.outlook.com]
> [cid:1778a0c2-cbfd-48f5-9f09-6e1bcaca952a at namprd08.prod.outlook.com]
>
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 10:41 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Right. It looks like the installation was unsuccessful. Could you
please
> send all of the screen output from running "./compile_MET_all.sh
> install_met_env.orca", and the install_met_env.orca file? Also, if
you
> have a config.log file for MET, it would be great if you could pass
that
> along too. Thanks!
>
> Julie
>
> On Wed, Jun 9, 2021 at 11:36 AM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Ohh. I have realized that it didn’t generated the log files meaning
it
> didn’t compiled it, right?
> This is the last line when I run ./compile_MET_all.sh
install_met_env.orca
>
> configure returned with non-zero (77) status
>
> Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 10:29 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Great! Please let us know if you encounter any issues. I'm also
happy to
> take a look at your make.log and make_test.log file if you'd like to
pass
> those along.
>
> I typically install and would recommend installing METplus at the
same
> level as MET. For example:
> /d1/jpresto/met
> /d1/jpresto/METplus
>
> I hope that helps!
>
> Julie
>
>
>
> On Wed, Jun 9, 2021 at 10:44 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello,
>
> I think I compiled the example successfully.Do I install METplus in
the
> same directory?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 8:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>>
> wrote:
>
> Hi Yakelyn.
>
> I see that you are having some trouble installing the external
libraries
> needed for MET.
>
> I'd like to point you to a script that you can use on a Linux
machine to
> install MET and its dependent libraries. Please take a look at the
> instructions under "Sample Script For Compiling External Libraries
And
> MET"
> on this page:
> https://dtcenter.org/community-code/model-evaluation-tools-
met/download
>
> You shouldn't get the cmake version problem because the tar file for
the
> BUFR library does not require using cmake to build.
>
> Please give that a try and let us know how it goes. Please let us
know
> if
> you have any questions about using the script.
>
> Julie
>
>
> On Wed, Jun 9, 2021 at 12:50 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> Wed Jun 09 00:49:48 2021: Request 100166 was acted upon.
> Transaction: Ticket created by
yakelynr at uw.edu<mailto:yakelynr at uw.edu
> ><mailto:yakelynr at uw.edu
> <mailto:yakelynr at uw.edu>
> Queue: met_help
> Subject: About MET installation - cmake version in Mac
> Owner: Nobody
> Requestors:
yakelynr at uw.edu<mailto:yakelynr at uw.edu><mailto:yakelynr at uw.edu
> ><mailto:yakelynr at uw.edu
>
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
>
> Hello,
>
> I am trying to install METplus but It says that I need to install
> NCEPLIBS-BUFR,
> I am using the following guide:
> https://github.com/NOAA-EMC/NCEPLIBS-bufr
>
> In linux, I keep getting an error about cmake version inside
> NCEPLIBS-BUFR, and I don’t know how to update the version.
>
> CMake Error at CMakeLists.txt:4 (cmake_minimum_required):
> CMake 3.15 or higher is required. You are running version 3.13.4
>
>
> -- Configuring incomplete, errors occurred!
>
> I have also tried to install MET and METPlus in my Mac (BigSur) but
I
> Cann’t. This the error:
> zsh: command not found: cmake
>
>
>
> Could I get some help?
>
> Thanks.
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu
>
> My working day may not be your working day. Please do not feel
obliged
> to
> reply to this email outside of your normal working hours.
>
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
> <install_met_env.orca_new>
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 09 12:59:45 2021
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Wed Jun 09 13:35:00 2021
It looks like the jasper library needs to have the JPEG library
installed:
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 09 15:59:58 2021
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Thu Jun 10 13:41:04 2021
My apologies for the delayed response. I have had meetings most of
the day
and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Fri Jun 11 14:49:41 2021
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik <jpresto at ucar.edu>
wrote:
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
>> ./configure
>> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
>> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Thank you. I have been trying to run ./configure but I cannot.
>> I keep errors like these:
>>
>> 1.
>> bash: ./configure: Permission denied
>> Then, I changed permissions using: chmod +x configure and run
./configure
>> again.
>>
>> 2.
>> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>>
>> I was thinking to run it using bash configure or sh configure but
it does
>> not work.
>>
>> Do you have any thoughts? Or should I contact the IT manager?
>>
>> Thanks a lot. I really appreciate your help.
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> It looks like the jasper library needs to have the JPEG library
installed:
>>
>> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>>
>>
>> This is frequently a standard library that is already installed,
but it
>> looks like you may need to install it. Here are the instructions
for
>> installing the JPEG library, which you should be able to copy and
paste:
>>
>> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
>> wget
>> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
>> tar -zxf libjpeg-libjpeg-9c.tar.gz
>> cd libjpeg-libjpeg-9c
>> ./configure
>> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
>> config.log
>> make >& make.log
>> make install >& make_install.log
>>
>>
>> Then, you can rerun the compile script. Since the BUFR library has
already
>> been installed you can uncomment the following lines from your
config
>> files:
>> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
>> export BUFRLIB_NAME=-lbufr
>> so that you don't have to wait for that library to be installed
again.
>>
>> Please give that a try and let us know if you have any questions.
>>
>> Julie
>>
>> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
>> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Hello Julie,
>>
>> Here the log files.
>> Thanks!
>>
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Fri Jun 11 14:55:02 2021
Hi Julie,
I couldn’t.
The error is :
bash: .configure: command not found
The configure executable doesn’t run.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu>> wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Fri Jun 11 14:59:29 2021
Can you please run "ls -l" in the directory with the configure script
in it
and send the results?
Thanks!
Julie
On Fri, Jun 11, 2021 at 2:55 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hi Julie,
>
> I couldn’t.
> The error is :
> bash: .configure: command not found
>
> The configure executable doesn’t run.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu>> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Fri Jun 11 15:03:02 2021
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu>> wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Fri Jun 11 15:03:02 2021
(base) yakelynr:libjpeg-libjpeg-9c$ls -l
total 4316
-rw-r--r-- 1 yakelynr atgstaff 386305 Jun 25 2018 aclocal.m4
-rw-r--r-- 1 yakelynr atgstaff 6096 Jun 25 2018 ar-lib
-rw-r--r-- 1 yakelynr atgstaff 5577 Jun 25 2018 cderror.h
-rw-r--r-- 1 yakelynr atgstaff 4863 Jun 25 2018 cdjpeg.c
-rw-r--r-- 1 yakelynr atgstaff 6443 Jun 25 2018 cdjpeg.h
-rw-r--r-- 1 yakelynr atgstaff 18378 Jun 25 2018 change.log
-rw-r--r-- 1 yakelynr atgstaff 14294 Jun 25 2018 cjpeg.1
-rw-r--r-- 1 yakelynr atgstaff 22482 Jun 25 2018 cjpeg.c
-rw-r--r-- 1 yakelynr atgstaff 12568 Jun 25 2018 ckconfig.c
-rw-r--r-- 1 yakelynr atgstaff 5482 Jun 25 2018 coderules.txt
-rw-r--r-- 1 yakelynr atgstaff 7730 Jun 25 2018 compile
-rw-r--r-- 1 yakelynr atgstaff 45732 Jun 25 2018 config.guess
-rw-r--r-- 1 yakelynr atgstaff 73 Jun 11 13:58 config.log
-rw-r--r-- 1 yakelynr atgstaff 38351 Jun 25 2018 config.sub
-rwxrwxr-x 1 yakelynr atgstaff 489509 Jun 25 2018 configure
-rw-r--r-- 1 yakelynr atgstaff 12249 Jun 25 2018 configure.ac
-rw-r--r-- 1 yakelynr atgstaff 24358 Jun 25 2018 depcomp
-rw-r--r-- 1 yakelynr atgstaff 8005 Jun 25 2018 djpeg.1
-rw-r--r-- 1 yakelynr atgstaff 20175 Jun 25 2018 djpeg.c
-rw-r--r-- 1 yakelynr atgstaff 17524 Jun 25 2018 example.c
-rw-r--r-- 1 yakelynr atgstaff 8752 Jun 25 2018 filelist.txt
-rw-r--r-- 1 yakelynr atgstaff 15177 Jun 25 2018 install-sh
-rw-r--r-- 1 yakelynr atgstaff 54918 Jun 25 2018 install.txt
-rw-r--r-- 1 yakelynr atgstaff 5235 Jun 25 2018 jaricom.c
-rw-r--r-- 1 yakelynr atgstaff 9672 Jun 25 2018 jcapimin.c
-rw-r--r-- 1 yakelynr atgstaff 6102 Jun 25 2018 jcapistd.c
-rw-r--r-- 1 yakelynr atgstaff 29171 Jun 25 2018 jcarith.c
-rw-r--r-- 1 yakelynr atgstaff 17104 Jun 25 2018 jccoefct.c
-rw-r--r-- 1 yakelynr atgstaff 19989 Jun 25 2018 jccolor.c
-rw-r--r-- 1 yakelynr atgstaff 16027 Jun 25 2018 jcdctmgr.c
-rw-r--r-- 1 yakelynr atgstaff 49544 Jun 25 2018 jchuff.c
-rw-r--r-- 1 yakelynr atgstaff 10912 Jun 25 2018 jcinit.c
-rw-r--r-- 1 yakelynr atgstaff 9953 Jun 25 2018 jcmainct.c
-rw-r--r-- 1 yakelynr atgstaff 19648 Jun 25 2018 jcmarker.c
-rw-r--r-- 1 yakelynr atgstaff 23761 Jun 25 2018 jcmaster.c
-rw-r--r-- 1 yakelynr atgstaff 3216 Jun 25 2018 jcomapi.c
-rw-r--r-- 1 yakelynr atgstaff 1464 Jun 25 2018 jconfig.bcc
-rw-r--r-- 1 yakelynr atgstaff 1664 Jun 25 2018 jconfig.cfg
-rw-r--r-- 1 yakelynr atgstaff 1181 Jun 25 2018 jconfig.dj
-rw-r--r-- 1 yakelynr atgstaff 1242 Jun 25 2018 jconfig.mac
-rw-r--r-- 1 yakelynr atgstaff 1240 Jun 25 2018 jconfig.manx
-rw-r--r-- 1 yakelynr atgstaff 1720 Jun 25 2018 jconfig.mc6
-rw-r--r-- 1 yakelynr atgstaff 1213 Jun 25 2018 jconfig.sas
-rw-r--r-- 1 yakelynr atgstaff 1350 Jun 25 2018 jconfig.st
-rw-r--r-- 1 yakelynr atgstaff 5992 Jun 25 2018 jconfig.txt
-rw-r--r-- 1 yakelynr atgstaff 1605 Jun 25 2018 jconfig.vc
-rw-r--r-- 1 yakelynr atgstaff 1016 Jun 25 2018 jconfig.vms
-rw-r--r-- 1 yakelynr atgstaff 1177 Jun 25 2018 jconfig.wat
-rw-r--r-- 1 yakelynr atgstaff 24486 Jun 25 2018 jcparam.c
-rw-r--r-- 1 yakelynr atgstaff 12574 Jun 25 2018 jcprepct.c
-rw-r--r-- 1 yakelynr atgstaff 20468 Jun 25 2018 jcsample.c
-rw-r--r-- 1 yakelynr atgstaff 15030 Jun 25 2018 jctrans.c
-rw-r--r-- 1 yakelynr atgstaff 13241 Jun 25 2018 jdapimin.c
-rw-r--r-- 1 yakelynr atgstaff 9669 Jun 25 2018 jdapistd.c
-rw-r--r-- 1 yakelynr atgstaff 25041 Jun 25 2018 jdarith.c
-rw-r--r-- 1 yakelynr atgstaff 8984 Jun 25 2018 jdatadst.c
-rw-r--r-- 1 yakelynr atgstaff 9648 Jun 25 2018 jdatasrc.c
-rw-r--r-- 1 yakelynr atgstaff 26169 Jun 25 2018 jdcoefct.c
-rw-r--r-- 1 yakelynr atgstaff 23630 Jun 25 2018 jdcolor.c
-rw-r--r-- 1 yakelynr atgstaff 18292 Jun 25 2018 jdct.h
-rw-r--r-- 1 yakelynr atgstaff 12764 Jun 25 2018 jddctmgr.c
-rw-r--r-- 1 yakelynr atgstaff 50107 Jun 25 2018 jdhuff.c
-rw-r--r-- 1 yakelynr atgstaff 25749 Jun 25 2018 jdinput.c
-rw-r--r-- 1 yakelynr atgstaff 20877 Jun 25 2018 jdmainct.c
-rw-r--r-- 1 yakelynr atgstaff 47450 Jun 25 2018 jdmarker.c
-rw-r--r-- 1 yakelynr atgstaff 19598 Jun 25 2018 jdmaster.c
-rw-r--r-- 1 yakelynr atgstaff 16200 Jun 25 2018 jdmerge.c
-rw-r--r-- 1 yakelynr atgstaff 724 Jun 25 2018 jdosaobj.txt
-rw-r--r-- 1 yakelynr atgstaff 10013 Jun 25 2018 jdpostct.c
-rw-r--r-- 1 yakelynr atgstaff 12290 Jun 25 2018 jdsample.c
-rw-r--r-- 1 yakelynr atgstaff 5193 Jun 25 2018 jdtrans.c
-rw-r--r-- 1 yakelynr atgstaff 8103 Jun 25 2018 jerror.c
-rw-r--r-- 1 yakelynr atgstaff 14884 Jun 25 2018 jerror.h
-rw-r--r-- 1 yakelynr atgstaff 6225 Jun 25 2018 jfdctflt.c
-rw-r--r-- 1 yakelynr atgstaff 8253 Jun 25 2018 jfdctfst.c
-rw-r--r-- 1 yakelynr atgstaff 163272 Jun 25 2018 jfdctint.c
-rw-r--r-- 1 yakelynr atgstaff 8600 Jun 25 2018 jidctflt.c
-rw-r--r-- 1 yakelynr atgstaff 13069 Jun 25 2018 jidctfst.c
-rw-r--r-- 1 yakelynr atgstaff 190063 Jun 25 2018 jidctint.c
-rw-r--r-- 1 yakelynr atgstaff 3596 Jun 25 2018 jinclude.h
-rw-r--r-- 1 yakelynr atgstaff 4777 Jun 25 2018 jmemansi.c
-rw-r--r-- 1 yakelynr atgstaff 8693 Jun 25 2018 jmemdosa.asm
-rw-r--r-- 1 yakelynr atgstaff 19615 Jun 25 2018 jmemdos.c
-rw-r--r-- 1 yakelynr atgstaff 9796 Jun 25 2018 jmemmac.c
-rw-r--r-- 1 yakelynr atgstaff 42154 Jun 25 2018 jmemmgr.c
-rw-r--r-- 1 yakelynr atgstaff 8590 Jun 25 2018 jmemname.c
-rw-r--r-- 1 yakelynr atgstaff 2881 Jun 25 2018 jmemnobs.c
-rw-r--r-- 1 yakelynr atgstaff 8428 Jun 25 2018 jmemsys.h
-rw-r--r-- 1 yakelynr atgstaff 15371 Jun 25 2018 jmorecfg.h
-rw-r--r-- 1 yakelynr atgstaff 18202 Jun 25 2018 jpegint.h
-rw-r--r-- 1 yakelynr atgstaff 50461 Jun 25 2018 jpeglib.h
-rw-r--r-- 1 yakelynr atgstaff 10336 Jun 25 2018 jpegtran.1
-rw-r--r-- 1 yakelynr atgstaff 19541 Jun 25 2018 jpegtran.c
-rw-r--r-- 1 yakelynr atgstaff 32184 Jun 25 2018 jquant1.c
-rw-r--r-- 1 yakelynr atgstaff 49782 Jun 25 2018 jquant2.c
-rw-r--r-- 1 yakelynr atgstaff 6962 Jun 25 2018 jutils.c
-rw-r--r-- 1 yakelynr atgstaff 410 Jun 25 2018 jversion.h
-rw-r--r-- 1 yakelynr atgstaff 38 Jun 25 2018 libjpeg.map
-rw-r--r-- 1 yakelynr atgstaff 225 Jun 25 2018 libjpeg.pc.in
-rw-r--r-- 1 yakelynr atgstaff 166939 Jun 25 2018 libjpeg.txt
-rw-r--r-- 1 yakelynr atgstaff 335236 Jun 25 2018 ltmain.sh
-rw-r--r-- 1 yakelynr atgstaff 1710 Jun 25 2018 makcjpeg.st
-rw-r--r-- 1 yakelynr atgstaff 1710 Jun 25 2018 makdjpeg.st
-rw-r--r-- 1 yakelynr atgstaff 1329 Jun 25 2018 makeadsw.vc6
-rw-r--r-- 1 yakelynr atgstaff 1892 Jun 25 2018 makeasln.v15
-rw-r--r-- 1 yakelynr atgstaff 1221 Jun 25 2018 makecdep.vc6
-rw-r--r-- 1 yakelynr atgstaff 3479 Jun 25 2018 makecdsp.vc6
-rw-r--r-- 1 yakelynr atgstaff 2356 Jun 25 2018 makecfil.v15
-rw-r--r-- 1 yakelynr atgstaff 3436 Jun 25 2018 makecmak.vc6
-rw-r--r-- 1 yakelynr atgstaff 3795 Jun 25 2018 makecvcx.v15
-rw-r--r-- 1 yakelynr atgstaff 1221 Jun 25 2018 makeddep.vc6
-rw-r--r-- 1 yakelynr atgstaff 3479 Jun 25 2018 makeddsp.vc6
-rw-r--r-- 1 yakelynr atgstaff 2356 Jun 25 2018 makedfil.v15
-rw-r--r-- 1 yakelynr atgstaff 3436 Jun 25 2018 makedmak.vc6
-rw-r--r-- 1 yakelynr atgstaff 3795 Jun 25 2018 makedvcx.v15
-rw-r--r-- 1 yakelynr atgstaff 5199 Jun 25 2018 Makefile.am
-rw-r--r-- 1 yakelynr atgstaff 12484 Jun 25 2018 makefile.ansi
-rw-r--r-- 1 yakelynr atgstaff 14105 Jun 25 2018 makefile.b32
-rw-r--r-- 1 yakelynr atgstaff 15157 Jun 25 2018 makefile.bcc
-rw-r--r-- 1 yakelynr atgstaff 12624 Jun 25 2018 makefile.dj
-rw-r--r-- 1 yakelynr atgstaff 39320 Jun 25 2018 Makefile.in
-rw-r--r-- 1 yakelynr atgstaff 12410 Jun 25 2018 makefile.manx
-rw-r--r-- 1 yakelynr atgstaff 14639 Jun 25 2018 makefile.mc6
-rw-r--r-- 1 yakelynr atgstaff 13943 Jun 25 2018 makefile.mms
-rw-r--r-- 1 yakelynr atgstaff 13311 Jun 25 2018 makefile.sas
-rw-r--r-- 1 yakelynr atgstaff 12872 Jun 25 2018 makefile.unix
-rw-r--r-- 1 yakelynr atgstaff 14549 Jun 25 2018 makefile.vc
-rw-r--r-- 1 yakelynr atgstaff 4563 Jun 25 2018 makefile.vms
-rw-r--r-- 1 yakelynr atgstaff 14741 Jun 25 2018 makefile.vs
-rw-r--r-- 1 yakelynr atgstaff 13127 Jun 25 2018 makefile.wat
-rw-r--r-- 1 yakelynr atgstaff 5969 Jun 25 2018 makejdep.vc6
-rw-r--r-- 1 yakelynr atgstaff 5457 Jun 25 2018 makejdsp.vc6
-rw-r--r-- 1 yakelynr atgstaff 561 Jun 25 2018 makejdsw.vc6
-rw-r--r-- 1 yakelynr atgstaff 5974 Jun 25 2018 makejfil.v15
-rw-r--r-- 1 yakelynr atgstaff 8507 Jun 25 2018 makejmak.vc6
-rw-r--r-- 1 yakelynr atgstaff 696 Jun 25 2018 makejsln.v15
-rw-r--r-- 1 yakelynr atgstaff 4806 Jun 25 2018 makejvcx.v15
-rw-r--r-- 1 yakelynr atgstaff 10586 Jun 25 2018 makeproj.mac
-rw-r--r-- 1 yakelynr atgstaff 146 Jun 25 2018 makerdep.vc6
-rw-r--r-- 1 yakelynr atgstaff 2723 Jun 25 2018 makerdsp.vc6
-rw-r--r-- 1 yakelynr atgstaff 1171 Jun 25 2018 makerfil.v15
-rw-r--r-- 1 yakelynr atgstaff 2584 Jun 25 2018 makermak.vc6
-rw-r--r-- 1 yakelynr atgstaff 3062 Jun 25 2018 makervcx.v15
-rw-r--r-- 1 yakelynr atgstaff 692 Jun 25 2018 maketdep.vc6
-rw-r--r-- 1 yakelynr atgstaff 3407 Jun 25 2018 maketdsp.vc6
-rw-r--r-- 1 yakelynr atgstaff 2185 Jun 25 2018 maketfil.v15
-rw-r--r-- 1 yakelynr atgstaff 2999 Jun 25 2018 maketmak.vc6
-rw-r--r-- 1 yakelynr atgstaff 3733 Jun 25 2018 maketvcx.v15
-rw-r--r-- 1 yakelynr atgstaff 146 Jun 25 2018 makewdep.vc6
-rw-r--r-- 1 yakelynr atgstaff 2723 Jun 25 2018 makewdsp.vc6
-rw-r--r-- 1 yakelynr atgstaff 1171 Jun 25 2018 makewfil.v15
-rw-r--r-- 1 yakelynr atgstaff 2584 Jun 25 2018 makewmak.vc6
-rw-r--r-- 1 yakelynr atgstaff 3062 Jun 25 2018 makewvcx.v15
-rw-r--r-- 1 yakelynr atgstaff 4252 Jun 25 2018 makljpeg.st
-rw-r--r-- 1 yakelynr atgstaff 1282 Jun 25 2018 maktjpeg.st
-rw-r--r-- 1 yakelynr atgstaff 214 Jun 25 2018 makvms.opt
-rw-r--r-- 1 yakelynr atgstaff 7088 Jun 25 2018 missing
-rw-r--r-- 1 yakelynr atgstaff 15872 Jun 25 2018 rdbmp.c
-rw-r--r-- 1 yakelynr atgstaff 7102 Jun 25 2018 rdcolmap.c
-rw-r--r-- 1 yakelynr atgstaff 1310 Jun 25 2018 rdgif.c
-rw-r--r-- 1 yakelynr atgstaff 1766 Jun 25 2018 rdjpgcom.1
-rw-r--r-- 1 yakelynr atgstaff 14981 Jun 25 2018 rdjpgcom.c
-rw-r--r-- 1 yakelynr atgstaff 16316 Jun 25 2018 rdppm.c
-rw-r--r-- 1 yakelynr atgstaff 12060 Jun 25 2018 rdrle.c
-rw-r--r-- 1 yakelynr atgstaff 11172 Jun 25 2018 rdswitch.c
-rw-r--r-- 1 yakelynr atgstaff 15761 Jun 25 2018 rdtarga.c
-rw-r--r-- 1 yakelynr atgstaff 19348 Jun 25 2018 README
-rw-r--r-- 1 yakelynr atgstaff 655 Jun 25 2018 readme.dos
-rw-r--r-- 1 yakelynr atgstaff 939 Jun 25 2018 README.md
-rw-r--r-- 1 yakelynr atgstaff 52507 Jun 25 2018 structure.txt
-rw-r--r-- 1 yakelynr atgstaff 35050 Jun 25 2018 testimg.bmp
-rw-r--r-- 1 yakelynr atgstaff 5764 Jun 25 2018 testimg.jpg
-rw-r--r-- 1 yakelynr atgstaff 5645 Jun 25 2018 testimgp.jpg
-rw-r--r-- 1 yakelynr atgstaff 101484 Jun 25 2018 testimg.ppm
-rw-r--r-- 1 yakelynr atgstaff 5770 Jun 25 2018 testorig.jpg
-rw-r--r-- 1 yakelynr atgstaff 5655 Jun 25 2018 testprog.jpg
-rw-r--r-- 1 yakelynr atgstaff 67627 Jun 25 2018 transupp.c
-rw-r--r-- 1 yakelynr atgstaff 9784 Jun 25 2018 transupp.h
-rw-r--r-- 1 yakelynr atgstaff 34211 Jun 25 2018 usage.txt
-rw-r--r-- 1 yakelynr atgstaff 20716 Jun 25 2018 Win32.Mak
-rw-r--r-- 1 yakelynr atgstaff 9970 Jun 25 2018 wizard.txt
-rw-r--r-- 1 yakelynr atgstaff 14381 Jun 25 2018 wrbmp.c
-rw-r--r-- 1 yakelynr atgstaff 13320 Jun 25 2018 wrgif.c
-rw-r--r-- 1 yakelynr atgstaff 2730 Jun 25 2018 wrjpgcom.1
-rw-r--r-- 1 yakelynr atgstaff 17780 Jun 25 2018 wrjpgcom.c
-rw-r--r-- 1 yakelynr atgstaff 8634 Jun 25 2018 wrppm.c
-rw-r--r-- 1 yakelynr atgstaff 9577 Jun 25 2018 wrrle.c
-rw-r--r-- 1 yakelynr atgstaff 7811 Jun 25 2018 wrtarga.c
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Fri Jun 11 15:24:46 2021
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu>> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Fri Jun 11 17:08:08 2021
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>>> wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Fri Jun 11 17:08:08 2021
(base) yakelynr:MET_testing$./compile_MET_all.sh install_met_env.orca
TEST_BASE = /home/orca/yakelynr/programs/MET/MET_testing
COMPILER = intel
MET_SUBDIR = /home/orca/yakelynr/programs/MET/MET_testing
MET_TARBALL = met-10.0.0.20210510.tar.gz
USE_MODULES = FALSE
LD_LIBRARY_PATH =
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib:/home/disk/p/yakelynr/anaconda3/bin/python-
3.7.3/lib:/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib:/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib:/home/disk/orca2/mcurcic/opt/hdf5-
1.8.19_intel-17.0.4/lib:/home/disk/orca2/mcurcic/opt/netcdf-4.4_intel-
17.0.4/lib:/usr/rels/openmpi-3.0.1-
17/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/ipp/lib/intel64:/opt/intel/mic/coi/host-
linux-
release/lib:/opt/intel/mic/myo/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2017/iga/lib:/opt/intel/debugger_2017/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/ipp/lib/intel64:/opt/intel/mic/coi/host-
linux-
release/lib:/opt/intel/mic/myo/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2017/iga/lib:/opt/intel/debugger_2017/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/ipp/lib/intel64:/opt/intel/mic/coi/host-
linux-
release/lib:/opt/intel/mic/myo/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2017/iga/lib:/opt/intel/debugger_2017/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/daal/lib/intel64_lin:/usr/rels/openmpi/lib:/opt/intel/compilers_and_libraries_2019.1.144/linux/compiler/lib/intel64_lin:/opt/intel//compilers_and_libraries_2019.1.144/linux/mpi/intel64/libfabric/lib:/opt/intel//compilers_and_libraries_2019.1.144/linux/mpi/intel64/lib/release:/opt/intel//compilers_and_libraries_2019.1.144/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.1.144/linux/ipp/lib/x86_64:/opt/intel/compilers_and_libraries_2019.1.144/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.!
1.144/linux/tbb/lib/intel64/gcc4.7:/opt/intel/compilers_and_libraries_2019.1.144/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2019/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2019.1.144/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.1.144/linux/daal/../tbb/lib/intel64_lin/gcc4.4:/opt/intel/Compiler/11.1/064/mkl/lib/em64t:/opt/intel/Compiler/11.1/064/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/064/lib/intel64:/opt/intel/Compiler/11.1/064/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/064/mkl/lib/em64t:/opt/intel/Compiler/11.1/064/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib:/opt/intel/Compiler/11.1/064/lib/intel64:/opt/intel/Compiler/11.1/064/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/064/mkl/lib/em64t:/opt/intel/Compiler/11.1/064/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib:/usr/local/lib:/lib/x86_64-
linux-gnu/:/usr/lib/x86_64-linux-
gnu/:/lib:/usr/lib/:/usr/local/lib:/home/disk/orca2/mcurcic/opt/hdf5-
1.8.19_intel-14.0.4/lib:/home/disk/orca2/mcurcic/opt/netcdf-4.4_intel-
14.0.4/lib:/usr/rels/openmpi-3.0.0/lib
Compiling libraries into:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs
USE_MODULES = FALSE
export CC=/home/disk/p/yakelynr/anaconda3/bin/x86_64-conda_cos6-
linux-gnu-cc
export
CXX=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/icc
export
FC=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/ifort
export
F77=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/ifort
export
F90=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/ifort
Using python version:
Python 3.7.3
Compiling ZLIB at Fri 11 Jun 2021 03:53:54 PM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/zlib/zlib-
1.2.11
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >
configure.log 2>&1
make > make.log 2>&1
make install > make_install.log 2>&1
rm
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/zlib.a
Compiling LIBPNG at Fri 11 Jun 2021 03:54:09 PM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/libpng/libpng-
1.6.37
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
LDFLAGS=-
L/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CPPFLAGS=-
I/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include >
configure.log 2>&1
make > make.log 2>&1
make install > make_install.log 2>&1
Compiling JASPER at Fri 11 Jun 2021 03:54:44 PM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/jasper-
1.900.1
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >
configure.log 2>&1
make > make.log 2>&1
make install > make_install.log 2>&1
Compiling G2CLIB at Fri 11 Jun 2021 03:55:49 PM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
make > make.log 2>&1
Compiling HDF5 at Fri 11 Jun 2021 03:55:54 PM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/hdf5/hdf5-
1.8.18
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
--with-
zlib=/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC LDFLAGS=-
L/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CPPFLAGS=-
I/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include >
configure.log 2>&1
make install > make_install.log 2>&1
Compiling NetCDF-C at Fri 11 Jun 2021 04:00:33 PM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
4.4.1.1
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
CFLAGS=-fPIC CXXFLAGS=-fPIC LDFLAGS=-
L/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CPPFLAGS=-
I/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include >
configure.log 2>&1
make install > make_install.log 2>&1
Compiling NetCDF-CXX at Fri 11 Jun 2021 04:01:30 PM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
LDFLAGS=-
L/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CPPFLAGS=-
I/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include >
configure.log 2>&1
configure returned with non-zero (1) status
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Mon Jun 14 13:23:06 2021
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>>> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Mon Jun 14 13:29:56 2021
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Mon Jun 14 14:28:45 2021
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Mon Jun 14 14:32:29 2021
Nope.
It is not there.
[cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Mon Jun 14 14:49:38 2021
Could you please send me the config.log file and make.log file
from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
Thanks!
Julie
On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Nope.
> It is not there.
>
> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> HI Yakelyn. Thank you!
>
> Before we proceed with NetCDF, I see that you have "grib2.h" in your
> include.output file, but no corresponding "libgrib2c.a" file in
> lib.output. Can you please check in
> the
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
> directory and see if a libgrib2c.a file exists? Please let me know.
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Mon Jun 14 14:53:58 2021
I have checked again and the libgrib2c.a is not there but I did find a
libg2c_v1.6.0.a.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Could you please send me the config.log file and make.log file
from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
Thanks!
Julie
On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Nope.
It is not there.
[cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Mon Jun 14 15:26:28 2021
Oh, that's great. I'm surprised by the name change, but thank you for
bringing that to my attention. Could you please run the following
command?
cp
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
Then, please uncomment the following lines in your
install_met_env.orca
file:
> #export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
> #export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
> #export GRIB2CLIB_NAME=-lgrib2c
since the GRIB2C library is now built.
Then, please get a fresh shell for a clean environment, and try
running the
script again. It should start with compiling HDF5 and then go on to
NetCDF. I'm wondering if there was something strange in the previous
environment that caused the build of NetCDF-CXX to fail.
Please let me know how it goes.
Julie
On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I have checked again and the libgrib2c.a is not there but I did find
a
> libg2c_v1.6.0.a.
>
>
>
> Yakelyn R. Jauregui
>
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Could you please send me the config.log file and make.log file
> from
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Nope.
> It is not there.
>
> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> HI Yakelyn. Thank you!
>
> Before we proceed with NetCDF, I see that you have "grib2.h" in your
> include.output file, but no corresponding "libgrib2c.a" file in
> lib.output. Can you please check in
> the
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
> directory and see if a libgrib2c.a file exists? Please let me know.
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Tue Jun 15 11:56:42 2021
Hello again,
I was busy yesterday but I run the compiler again and It stopped
compiling NetCDF-CXX.
I am attaching the output and the config.log. Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Oh, that's great. I'm surprised by the name change, but thank you for
bringing that to my attention. Could you please run the following
command?
cp
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
Then, please uncomment the following lines in your
install_met_env.orca
file:
#export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
#export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
#export GRIB2CLIB_NAME=-lgrib2c
since the GRIB2C library is now built.
Then, please get a fresh shell for a clean environment, and try
running the
script again. It should start with compiling HDF5 and then go on to
NetCDF. I'm wondering if there was something strange in the previous
environment that caused the build of NetCDF-CXX to fail.
Please let me know how it goes.
Julie
On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I have checked again and the libgrib2c.a is not there but I did find a
libg2c_v1.6.0.a.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Could you please send me the config.log file and make.log file
from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
Thanks!
Julie
On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Nope.
It is not there.
[cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Tue Jun 15 11:56:42 2021
COMPILER = intel
MET_SUBDIR = /home/orca/yakelynr/programs/MET/MET_testing
MET_TARBALL = met-10.0.0.20210510.tar.gz
USE_MODULES = FALSE
LD_LIBRARY_PATH =
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib:/home/disk/p/yakelynr/anaconda3/bin/python-
3.7.3/lib:/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib:/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib:/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib:/home/disk/orca2/mcurcic/opt/hdf5-
1.8.19_intel-17.0.4/lib:/home/disk/orca2/mcurcic/opt/netcdf-4.4_intel-
17.0.4/lib:/usr/rels/openmpi-3.0.1-
17/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/ipp/lib/intel64:/opt/intel/mic/coi/host-
linux-
release/lib:/opt/intel/mic/myo/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2017/iga/lib:/opt/intel/debugger_2017/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/ipp/lib/intel64:/opt/intel/mic/coi/host-
linux-
release/lib:/opt/intel/mic/myo/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2017/iga/lib:/opt/intel/debugger_2017/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/ipp/lib/intel64:/opt/intel/mic/coi/host-
linux-
release/lib:/opt/intel/mic/myo/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2017.8.262/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2017/iga/lib:/opt/intel/debugger_2017/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2017.8.262/linux/daal/lib/intel64_lin:/usr/rels/openmpi/lib:/opt/intel/compilers_and_libraries_2019.1.144/linux/compiler/lib/intel64_lin:/opt/intel//compilers_and_libraries_2019.1.144/linux/mpi/intel64/libfabric/lib:/opt/intel//compilers_and_libraries_2019.1.144/linux/mpi/intel64/lib/release:/opt/intel//compilers_and_libraries_2019.1.144/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.1.144/linux/ipp/lib/x86_64:/opt/intel/compilers_and_libraries_2019.1.144/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.!
1.144/linux/tbb/lib/intel64/gcc4.7:/opt/intel/compilers_and_libraries_2019.1.144/linux/tbb/lib/intel64/gcc4.7:/opt/intel/debugger_2019/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2019.1.144/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.1.144/linux/daal/../tbb/lib/intel64_lin/gcc4.4:/opt/intel/Compiler/11.1/064/mkl/lib/em64t:/opt/intel/Compiler/11.1/064/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/064/lib/intel64:/opt/intel/Compiler/11.1/064/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/064/mkl/lib/em64t:/opt/intel/Compiler/11.1/064/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib:/opt/intel/Compiler/11.1/064/lib/intel64:/opt/intel/Compiler/11.1/064/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/064/mkl/lib/em64t:/opt/intel/Compiler/11.1/064/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib:/usr/local/lib:/lib/x86_64-
linux-gnu/:/usr/lib/x86_64-linux-
gnu/:/lib:/usr/lib/:/usr/local/lib:/home/disk/orca2/mcurcic/opt/hdf5-
1.8.19_intel-14.0.4/lib:/home/disk/orca2/mcurcic/opt/netcdf-4.4_intel-
14.0.4/lib:/usr/rels/openmpi-3.0.0/lib
Compiling libraries into:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs
USE_MODULES = FALSE
export CC=/home/disk/p/yakelynr/anaconda3/bin/x86_64-conda_cos6-
linux-gnu-cc
export
CXX=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/icc
export
FC=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/ifort
export
F77=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/ifort
export
F90=/opt/intel/compilers_and_libraries_2017.8.262/linux/bin/intel64/ifort
Using python version:
Python 3.7.3
Compiling HDF5 at Tue 15 Jun 2021 10:25:53 AM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/hdf5/hdf5-
1.8.18
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
--with-
zlib=/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC LDFLAGS=-
L/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CPPFLAGS=-
I/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include >
configure.log 2>&1
make install > make_install.log 2>&1
Compiling NetCDF-C at Tue 15 Jun 2021 10:31:01 AM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
4.4.1.1
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
CFLAGS=-fPIC CXXFLAGS=-fPIC LDFLAGS=-
L/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CPPFLAGS=-
I/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include >
configure.log 2>&1
make install > make_install.log 2>&1
Compiling NetCDF-CXX at Tue 15 Jun 2021 10:32:06 AM PDT
cd
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
LDFLAGS=-
L/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
CPPFLAGS=-
I/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include >
configure.log 2>&1
configure returned with non-zero (1) status
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Tue Jun 15 12:44:36 2021
Thank you for trying a clean environment.
It looks like this is a known and unresolved problem in the NetCDF
repository:
https://github.com/Unidata/netcdf-cxx4/issues/61
However, it is strange that we have not encountered this error
previously
and that we have been able to build this software on many machines.
I do have an idea for something we can try to see if we can work
around
this problem and get it to build. I have changed line 580 in
compile_MET_all.sh to include "LIBS" below:
./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
> CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl
-lhdf5 -lz
> -lnetcdf" > configure.log 2>&1
I'm hoping this will allow the linker to find the files it needs.
I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
Please let me know how it goes.
I will be out of the office starting at 1:15 pm MDT today. If you're
able
to test quickly, I will try to reply before leaving for the day. I
hope
this helps!
Julie
On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello again,
>
> I was busy yesterday but I run the compiler again and It stopped
compiling
> NetCDF-CXX.
> I am attaching the output and the config.log. Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Oh, that's great. I'm surprised by the name change, but thank you
for
> bringing that to my attention. Could you please run the following
command?
>
> cp
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
>
>
> Then, please uncomment the following lines in your
install_met_env.orca
> file:
>
> #export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
> #export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
> #export GRIB2CLIB_NAME=-lgrib2c
>
> since the GRIB2C library is now built.
>
> Then, please get a fresh shell for a clean environment, and try
running the
> script again. It should start with compiling HDF5 and then go on to
> NetCDF. I'm wondering if there was something strange in the
previous
> environment that caused the build of NetCDF-CXX to fail.
>
> Please let me know how it goes.
>
> Julie
>
>
> On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I have checked again and the libgrib2c.a is not there but I did find
a
> libg2c_v1.6.0.a.
>
>
>
> Yakelyn R. Jauregui
>
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Could you please send me the config.log file and make.log file
> from
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Nope.
> It is not there.
>
> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> HI Yakelyn. Thank you!
>
> Before we proceed with NetCDF, I see that you have "grib2.h" in your
> include.output file, but no corresponding "libgrib2c.a" file in
> lib.output. Can you please check in
> the
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
> directory and see if a libgrib2c.a file exists? Please let me know.
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Tue Jun 15 14:35:03 2021
Hi Julie,
Perhaps is too late, but I compiled the libraries successfully but met
didn’t compile.
I am attaching the log files.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Thank you for trying a clean environment.
It looks like this is a known and unresolved problem in the NetCDF
repository:
https://github.com/Unidata/netcdf-cxx4/issues/61
However, it is strange that we have not encountered this error
previously
and that we have been able to build this software on many machines.
I do have an idea for something we can try to see if we can work
around
this problem and get it to build. I have changed line 580 in
compile_MET_all.sh to include "LIBS" below:
./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl -lhdf5
-lz
-lnetcdf" > configure.log 2>&1
I'm hoping this will allow the linker to find the files it needs.
I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
Please let me know how it goes.
I will be out of the office starting at 1:15 pm MDT today. If you're
able
to test quickly, I will try to reply before leaving for the day. I
hope
this helps!
Julie
On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello again,
I was busy yesterday but I run the compiler again and It stopped
compiling
NetCDF-CXX.
I am attaching the output and the config.log. Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Oh, that's great. I'm surprised by the name change, but thank you for
bringing that to my attention. Could you please run the following
command?
cp
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
Then, please uncomment the following lines in your
install_met_env.orca
file:
#export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
#export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
#export GRIB2CLIB_NAME=-lgrib2c
since the GRIB2C library is now built.
Then, please get a fresh shell for a clean environment, and try
running the
script again. It should start with compiling HDF5 and then go on to
NetCDF. I'm wondering if there was something strange in the previous
environment that caused the build of NetCDF-CXX to fail.
Please let me know how it goes.
Julie
On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I have checked again and the libgrib2c.a is not there but I did find a
libg2c_v1.6.0.a.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Could you please send me the config.log file and make.log file
from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
Thanks!
Julie
On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Nope.
It is not there.
[cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
<compile_MET_all_new.sh.tgz>
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Wed Jun 16 11:22:22 2021
Hi Yakelyn.
I'm so glad that solution worked for NetCDF-CXX.
Thank you for passing along the MET files. In your config.log file I
see
the following:
> Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R)
64,
> Version 17.0.8.262 Build 20180907
and
> gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
And, when looking up the error from your make.log file online using
the
search string:
> "error: identifier "__is_assignable" is undefined"
I found the following information online from Stack Overflow (
https://stackoverflow.com/questions/50984512/intel-compiler-17-0-with-
gcc-7-1-8-1
):
> Intel C++ 17 does NOT support gcc 7/8
and there is a link to the Intel 17 Release Notes:
https://software.intel.com/content/www/us/en/develop/articles/intel-c-
compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
2017.html
where it says in the release notes
> Linux Developer tools component installed, including gcc, g++ and
related
> tools
>
> - gcc versions 4.3 - 6 supported
>
> It sounds like the issue is with features that GCC 8.1's libstdc++
headers
make use of which aren't supported by Intel's compiler, not features
we are
using in the MET code, specifically '__is_assignable' is a GCC
intrinsic
which isn't part of the C++ standard but is used internally by GCC and
used
in GCC's libstdc++.
It looks like you will need to obtain gcc 6 and use that in place of
gcc
7.3.0. Unfortunately, once you have gcc 6, you will need to recompile
the
libraries again and then compile MET.
Julie
On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hi Julie,
>
> Perhaps is too late, but I compiled the libraries successfully but
met
> didn’t compile.
>
> I am attaching the log files.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you for trying a clean environment.
>
> It looks like this is a known and unresolved problem in the NetCDF
> repository:
> https://github.com/Unidata/netcdf-cxx4/issues/61
>
> However, it is strange that we have not encountered this error
previously
> and that we have been able to build this software on many machines.
>
> I do have an idea for something we can try to see if we can work
around
> this problem and get it to build. I have changed line 580 in
> compile_MET_all.sh to include "LIBS" below:
>
> ./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
> CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl
-lhdf5 -lz
> -lnetcdf" > configure.log 2>&1
>
>
> I'm hoping this will allow the linker to find the files it needs.
>
> I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
> the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
> Please let me know how it goes.
>
> I will be out of the office starting at 1:15 pm MDT today. If
you're able
> to test quickly, I will try to reply before leaving for the day. I
hope
> this helps!
>
> Julie
>
> On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello again,
>
> I was busy yesterday but I run the compiler again and It stopped
compiling
> NetCDF-CXX.
> I am attaching the output and the config.log. Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Oh, that's great. I'm surprised by the name change, but thank you
for
> bringing that to my attention. Could you please run the following
command?
>
> cp
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
>
>
> Then, please uncomment the following lines in your
install_met_env.orca
> file:
>
> #export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
> #export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
> #export GRIB2CLIB_NAME=-lgrib2c
>
> since the GRIB2C library is now built.
>
> Then, please get a fresh shell for a clean environment, and try
running the
> script again. It should start with compiling HDF5 and then go on to
> NetCDF. I'm wondering if there was something strange in the
previous
> environment that caused the build of NetCDF-CXX to fail.
>
> Please let me know how it goes.
>
> Julie
>
>
> On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I have checked again and the libgrib2c.a is not there but I did find
a
> libg2c_v1.6.0.a.
>
>
>
> Yakelyn R. Jauregui
>
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Could you please send me the config.log file and make.log file
> from
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Nope.
> It is not there.
>
> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> HI Yakelyn. Thank you!
>
> Before we proceed with NetCDF, I see that you have "grib2.h" in your
> include.output file, but no corresponding "libgrib2c.a" file in
> lib.output. Can you please check in
> the
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
> directory and see if a libgrib2c.a file exists? Please let me know.
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu>>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
> <compile_MET_all_new.sh.tgz>
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Mon Jun 21 13:59:31 2021
Hi Yakelyn.
I just wanted to follow up to see if you were able to make any
progress and
check in to see if you needed assistance.
Kind regards,
Julie
On Wed, Jun 16, 2021 at 11:22 AM Julie Prestopnik <jpresto at ucar.edu>
wrote:
> Hi Yakelyn.
>
> I'm so glad that solution worked for NetCDF-CXX.
>
> Thank you for passing along the MET files. In your config.log file
I see
> the following:
>
>> Intel(R) C Intel(R) 64 Compiler for applications running on
Intel(R) 64,
>> Version 17.0.8.262 Build 20180907
>
> and
>
>> gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
>
>
> And, when looking up the error from your make.log file online using
the
> search string:
>
>> "error: identifier "__is_assignable" is undefined"
>
>
> I found the following information online from Stack Overflow (
> https://stackoverflow.com/questions/50984512/intel-compiler-17-0-
with-gcc-7-1-8-1
> ):
>
>> Intel C++ 17 does NOT support gcc 7/8
>
> and there is a link to the Intel 17 Release Notes:
>
> https://software.intel.com/content/www/us/en/develop/articles/intel-
c-compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
2017.html
>
> where it says in the release notes
>
>> Linux Developer tools component installed, including gcc, g++ and
related
>> tools
>>
>> - gcc versions 4.3 - 6 supported
>>
>> It sounds like the issue is with features that GCC 8.1's libstdc++
> headers make use of which aren't supported by Intel's compiler, not
> features we are using in the MET code, specifically
'__is_assignable' is a
> GCC intrinsic which isn't part of the C++ standard but is used
internally
> by GCC and used in GCC's libstdc++.
>
> It looks like you will need to obtain gcc 6 and use that in place of
gcc
> 7.3.0. Unfortunately, once you have gcc 6, you will need to
recompile the
> libraries again and then compile MET.
>
> Julie
>
>
> On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Hi Julie,
>>
>> Perhaps is too late, but I compiled the libraries successfully but
met
>> didn’t compile.
>>
>> I am attaching the log files.
>>
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> Thank you for trying a clean environment.
>>
>> It looks like this is a known and unresolved problem in the NetCDF
>> repository:
>> https://github.com/Unidata/netcdf-cxx4/issues/61
>>
>> However, it is strange that we have not encountered this error
previously
>> and that we have been able to build this software on many machines.
>>
>> I do have an idea for something we can try to see if we can work
around
>> this problem and get it to build. I have changed line 580 in
>> compile_MET_all.sh to include "LIBS" below:
>>
>> ./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
>> CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl
-lhdf5 -lz
>> -lnetcdf" > configure.log 2>&1
>>
>>
>> I'm hoping this will allow the linker to find the files it needs.
>>
>> I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
>> the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
>> Please let me know how it goes.
>>
>> I will be out of the office starting at 1:15 pm MDT today. If
you're able
>> to test quickly, I will try to reply before leaving for the day. I
hope
>> this helps!
>>
>> Julie
>>
>> On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
>> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Hello again,
>>
>> I was busy yesterday but I run the compiler again and It stopped
compiling
>> NetCDF-CXX.
>> I am attaching the output and the config.log. Could you please
help?
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> Oh, that's great. I'm surprised by the name change, but thank you
for
>> bringing that to my attention. Could you please run the following
>> command?
>>
>> cp
>>
>>
>>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
>>
>>
>>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
>>
>>
>> Then, please uncomment the following lines in your
install_met_env.orca
>> file:
>>
>> #export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
>> #export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
>> #export GRIB2CLIB_NAME=-lgrib2c
>>
>> since the GRIB2C library is now built.
>>
>> Then, please get a fresh shell for a clean environment, and try
running
>> the
>> script again. It should start with compiling HDF5 and then go on
to
>> NetCDF. I'm wondering if there was something strange in the
previous
>> environment that caused the build of NetCDF-CXX to fail.
>>
>> Please let me know how it goes.
>>
>> Julie
>>
>>
>> On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
>>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> I have checked again and the libgrib2c.a is not there but I did
find a
>> libg2c_v1.6.0.a.
>>
>>
>>
>> Yakelyn R. Jauregui
>>
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> Could you please send me the config.log file and make.log file
>> from
>>
>>
>>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
>>
>> Thanks!
>>
>> Julie
>>
>> On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
>>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
>> ><mailto:met_help at ucar.edu>>
>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Nope.
>> It is not there.
>>
>> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> HI Yakelyn. Thank you!
>>
>> Before we proceed with NetCDF, I see that you have "grib2.h" in
your
>> include.output file, but no corresponding "libgrib2c.a" file in
>> lib.output. Can you please check in
>> the
>>
>>
>>
>>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
>> directory and see if a libgrib2c.a file exists? Please let me
know.
>>
>> Thanks!
>>
>> Julie
>>
>> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
>>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
>> ><mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu>>
>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Hello Julie!
>> Good to hear from you.
>>
>> Here are the files you requested.
>>
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> I'm so glad to hear that Jasper compiled! I have not encountered
this
>> problem with NetCDF-CXX previously.
>>
>> I am seeing things like the following in your config.log file for
>> NetCDF-CXX:
>>
>>
>>
>>
>>
>>
>> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
>> /tmp/cc3l35IH.o: in function `main':
>>
>>
>>
>>
>>
>>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
>> undefined reference to `nc_create'
>>
>>
>>
>>
>>
>>
>>
>> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
>> /home/orca/yakelynr/programs/MET/MET_tes\
>> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>>
>>
>>
>>
>>
>> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
>> /home/orca/yakelynr/programs/MET/MET_tes\
>> ting/external_libs/lib/libnetcdf.so: undefined reference to
>> `H5T_STD_U16LE_g'
>>
>>
>> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
>> properly.
>>
>> could you please run "ls" on the following directories and send me
the
>> output?
>> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
>> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>>
>> Could you please also send your latest install_met_env file for
this
>> environment?
>>
>> Thanks!
>>
>> Julie
>>
>>
>>
>> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
>>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
>> ><mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu>>
>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Thank you! Jasper compiled this time.
>>
>> Now I have problems with netcdf. I am attaching the log files and
the
>> output in a txt file.
>>
>> Could you please check it out?
>>
>> Thanks!
>>
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> Thank you so much. I am sorry you're having trouble with that
package.
>>
>> Please run the following instead, and this should work better:
>>
>> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
>> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
>> tar -zxf jpegsrc.v9d.tar.gz
>> cd jpeg-9d
>> ./configure
>> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
>> config.log
>> make >& make.log
>> make install >& make_install.log
>>
>>
>> Then, you can rerun the compile script. Since the BUFR library has
already
>> been installed you can uncomment the following lines from your
config
>> files:
>> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
>> export BUFRLIB_NAME=-lbufr
>> so that you don't have to wait for that library to be installed
again.
>>
>> Please give that a try and let us know if you have any questions.
>>
>> Julie
>>
>> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
>>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
>> ><mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu>>
>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> I copied the results from ls -l in that txt file.
>>
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> Hi Yakelyn.
>>
>> I just wanted to follow up and see if you were able to get
configure to
>> run
>> for the JPEG library? I have only installed in Linux environments
and I
>> think this is our best bet to get you moving forward with MET.
>>
>> Thanks!
>>
>> Julie
>>
>> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik <jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> >><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> ><mailto:jpresto at ucar.edu
>> <mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> ><mailto:jpresto at ucar.edu><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>> <mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> ><mailto:jpresto at ucar.edu><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>> <mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> ><mailto:jpresto at ucar.edu><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> >><mailto:
>> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> ><mailto:jpresto at ucar.edu>>>>
>> wrote:
>>
>> My apologies for the delayed response. I have had meetings most of
the
>> day and have not had a chance to follow up.
>>
>> It looks like their configure script was not made executable.
Between
>> these lines:
>>
>> cd libjpeg-libjpeg-9c
>> ./configure
>> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
>> config.log
>>
>>
>> Please run the following to make the configure script executable:
>>
>> chmod 775 configure
>>
>>
>> That should allow you to run the next ./configure line.
>>
>> I hope that helps! Please let us know how it goes.
>>
>> Julie
>>
>> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
>>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
>> ><mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu>>
>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Thank you. I have been trying to run ./configure but I cannot.
>> I keep errors like these:
>>
>> 1.
>> bash: ./configure: Permission denied
>> Then, I changed permissions using: chmod +x configure and run
./configure
>> again.
>>
>> 2.
>> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>>
>> I was thinking to run it using bash configure or sh configure but
it does
>> not work.
>>
>> Do you have any thoughts? Or should I contact the IT manager?
>>
>> Thanks a lot. I really appreciate your help.
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> It looks like the jasper library needs to have the JPEG library
installed:
>>
>> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>>
>>
>> This is frequently a standard library that is already installed,
but it
>> looks like you may need to install it. Here are the instructions
for
>> installing the JPEG library, which you should be able to copy and
paste:
>>
>> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
>> wget
>> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
>> tar -zxf libjpeg-libjpeg-9c.tar.gz
>> cd libjpeg-libjpeg-9c
>> ./configure
>> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
>> config.log
>> make >& make.log
>> make install >& make_install.log
>>
>>
>> Then, you can rerun the compile script. Since the BUFR library has
already
>> been installed you can uncomment the following lines from your
config
>> files:
>> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
>> export BUFRLIB_NAME=-lbufr
>> so that you don't have to wait for that library to be installed
again.
>>
>> Please give that a try and let us know if you have any questions.
>>
>> Julie
>>
>> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
>>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu
>> <mailto:met_help at ucar.edu>>
>> wrote:
>>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>>
>> Hello Julie,
>>
>> Here the log files.
>> Thanks!
>>
>>
>> Yakelyn R. Jauregui
>>
>> Graduate Student
>> Department of Atmospheric Sciences
>> 319, ATG Building
>> Seattle, WA 98195-1640
>>
>> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>
>> <mailto:met_help at ucar.edu>> wrote:
>>
>> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> <mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
>> ><mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>>
>>
>>
>> --
>> Julie Prestopnik (she/her)
>> Software Engineer
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>>
>> My working day may not be your working day. Please do not feel
obliged to
>> reply to this email outside of your normal working hours.
>>
>> <compile_MET_all_new.sh.tgz>
>>
>>
>>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Mon Jun 21 14:07:58 2021
Hello Julie!
I haven’t tried installing gcc because I am installing MET in my
group’s research cluster and I don’t have permission to install
libraries.
I wonder if instead of intel I can use gnu and run it again?
Do you think that will help?
Do I need to delete the external_libs directory?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 21, 2021, at 12:59 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up to see if you were able to make any
progress and
check in to see if you needed assistance.
Kind regards,
Julie
On Wed, Jun 16, 2021 at 11:22 AM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu>> wrote:
Hi Yakelyn.
I'm so glad that solution worked for NetCDF-CXX.
Thank you for passing along the MET files. In your config.log file I
see
the following:
Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R)
64,
Version 17.0.8.262 Build 20180907
and
gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
And, when looking up the error from your make.log file online using
the
search string:
"error: identifier "__is_assignable" is undefined"
I found the following information online from Stack Overflow (
https://stackoverflow.com/questions/50984512/intel-compiler-17-0-with-
gcc-7-1-8-1
):
Intel C++ 17 does NOT support gcc 7/8
and there is a link to the Intel 17 Release Notes:
https://software.intel.com/content/www/us/en/develop/articles/intel-c-
compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
2017.html
where it says in the release notes
Linux Developer tools component installed, including gcc, g++ and
related
tools
- gcc versions 4.3 - 6 supported
It sounds like the issue is with features that GCC 8.1's libstdc++
headers make use of which aren't supported by Intel's compiler, not
features we are using in the MET code, specifically '__is_assignable'
is a
GCC intrinsic which isn't part of the C++ standard but is used
internally
by GCC and used in GCC's libstdc++.
It looks like you will need to obtain gcc 6 and use that in place of
gcc
7.3.0. Unfortunately, once you have gcc 6, you will need to recompile
the
libraries again and then compile MET.
Julie
On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hi Julie,
Perhaps is too late, but I compiled the libraries successfully but met
didn’t compile.
I am attaching the log files.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you for trying a clean environment.
It looks like this is a known and unresolved problem in the NetCDF
repository:
https://github.com/Unidata/netcdf-cxx4/issues/61
However, it is strange that we have not encountered this error
previously
and that we have been able to build this software on many machines.
I do have an idea for something we can try to see if we can work
around
this problem and get it to build. I have changed line 580 in
compile_MET_all.sh to include "LIBS" below:
./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl -lhdf5
-lz
-lnetcdf" > configure.log 2>&1
I'm hoping this will allow the linker to find the files it needs.
I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
Please let me know how it goes.
I will be out of the office starting at 1:15 pm MDT today. If you're
able
to test quickly, I will try to reply before leaving for the day. I
hope
this helps!
Julie
On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello again,
I was busy yesterday but I run the compiler again and It stopped
compiling
NetCDF-CXX.
I am attaching the output and the config.log. Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Oh, that's great. I'm surprised by the name change, but thank you for
bringing that to my attention. Could you please run the following
command?
cp
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
Then, please uncomment the following lines in your
install_met_env.orca
file:
#export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
#export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
#export GRIB2CLIB_NAME=-lgrib2c
since the GRIB2C library is now built.
Then, please get a fresh shell for a clean environment, and try
running
the
script again. It should start with compiling HDF5 and then go on to
NetCDF. I'm wondering if there was something strange in the previous
environment that caused the build of NetCDF-CXX to fail.
Please let me know how it goes.
Julie
On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I have checked again and the libgrib2c.a is not there but I did find a
libg2c_v1.6.0.a.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Could you please send me the config.log file and make.log file
from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
Thanks!
Julie
On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Nope.
It is not there.
[cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to
run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
<compile_MET_all_new.sh.tgz>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Julie Prestopnik
Time: Mon Jun 21 14:23:49 2021
Hi Yakelyn.
Installing and building with GNU could very well work and is a great
idea.
Yes, you would need to delete the external_libs directory and start
fresh,
building everything with the GNU compilers.
Please let us know how it goes and don't hesitate to reach out with
any
questions.
Julie
On Mon, Jun 21, 2021 at 2:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
>
> I haven’t tried installing gcc because I am installing MET in my
group’s
> research cluster and I don’t have permission to install libraries.
> I wonder if instead of intel I can use gnu and run it again?
>
> Do you think that will help?
>
> Do I need to delete the external_libs directory?
> Thanks!
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 21, 2021, at 12:59 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up to see if you were able to make any
progress and
> check in to see if you needed assistance.
>
> Kind regards,
> Julie
>
> On Wed, Jun 16, 2021 at 11:22 AM Julie Prestopnik <jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I'm so glad that solution worked for NetCDF-CXX.
>
> Thank you for passing along the MET files. In your config.log file
I see
> the following:
>
> Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R)
64,
> Version 17.0.8.262 Build 20180907
>
> and
>
> gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
>
>
> And, when looking up the error from your make.log file online using
the
> search string:
>
> "error: identifier "__is_assignable" is undefined"
>
>
> I found the following information online from Stack Overflow (
>
> https://stackoverflow.com/questions/50984512/intel-compiler-17-0-
with-gcc-7-1-8-1
> ):
>
> Intel C++ 17 does NOT support gcc 7/8
>
> and there is a link to the Intel 17 Release Notes:
>
>
> https://software.intel.com/content/www/us/en/develop/articles/intel-
c-compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
2017.html
>
> where it says in the release notes
>
> Linux Developer tools component installed, including gcc, g++ and
related
> tools
>
> - gcc versions 4.3 - 6 supported
>
> It sounds like the issue is with features that GCC 8.1's libstdc++
> headers make use of which aren't supported by Intel's compiler, not
> features we are using in the MET code, specifically
'__is_assignable' is a
> GCC intrinsic which isn't part of the C++ standard but is used
internally
> by GCC and used in GCC's libstdc++.
>
> It looks like you will need to obtain gcc 6 and use that in place of
gcc
> 7.3.0. Unfortunately, once you have gcc 6, you will need to
recompile the
> libraries again and then compile MET.
>
> Julie
>
>
> On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hi Julie,
>
> Perhaps is too late, but I compiled the libraries successfully but
met
> didn’t compile.
>
> I am attaching the log files.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you for trying a clean environment.
>
> It looks like this is a known and unresolved problem in the NetCDF
> repository:
> https://github.com/Unidata/netcdf-cxx4/issues/61
>
> However, it is strange that we have not encountered this error
previously
> and that we have been able to build this software on many machines.
>
> I do have an idea for something we can try to see if we can work
around
> this problem and get it to build. I have changed line 580 in
> compile_MET_all.sh to include "LIBS" below:
>
> ./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
> CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl
-lhdf5 -lz
> -lnetcdf" > configure.log 2>&1
>
>
> I'm hoping this will allow the linker to find the files it needs.
>
> I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
> the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
> Please let me know how it goes.
>
> I will be out of the office starting at 1:15 pm MDT today. If
you're able
> to test quickly, I will try to reply before leaving for the day. I
hope
> this helps!
>
> Julie
>
> On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello again,
>
> I was busy yesterday but I run the compiler again and It stopped
compiling
> NetCDF-CXX.
> I am attaching the output and the config.log. Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Oh, that's great. I'm surprised by the name change, but thank you
for
> bringing that to my attention. Could you please run the following
> command?
>
> cp
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
>
>
> Then, please uncomment the following lines in your
install_met_env.orca
> file:
>
> #export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
> #export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
> #export GRIB2CLIB_NAME=-lgrib2c
>
> since the GRIB2C library is now built.
>
> Then, please get a fresh shell for a clean environment, and try
running
> the
> script again. It should start with compiling HDF5 and then go on to
> NetCDF. I'm wondering if there was something strange in the
previous
> environment that caused the build of NetCDF-CXX to fail.
>
> Please let me know how it goes.
>
> Julie
>
>
> On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I have checked again and the libgrib2c.a is not there but I did find
a
> libg2c_v1.6.0.a.
>
>
>
> Yakelyn R. Jauregui
>
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Could you please send me the config.log file and make.log file
> from
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Nope.
> It is not there.
>
> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> HI Yakelyn. Thank you!
>
> Before we proceed with NetCDF, I see that you have "grib2.h" in your
> include.output file, but no corresponding "libgrib2c.a" file in
> lib.output. Can you please check in
> the
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
> directory and see if a libgrib2c.a file exists? Please let me know.
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to
> run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> >><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
> <compile_MET_all_new.sh.tgz>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Wed Jun 30 19:50:35 2021
Hi Julie,
I finally decided to use a docker container. I was wondering how can I
use Pointstat from MetPlus for my own data . I have run the tutorial
and everything run but I don’t know how to get model/forecast data and
compare it with my observation (see attached).
Appreciated.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 21, 2021, at 1:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
Installing and building with GNU could very well work and is a great
idea.
Yes, you would need to delete the external_libs directory and start
fresh,
building everything with the GNU compilers.
Please let us know how it goes and don't hesitate to reach out with
any
questions.
Julie
On Mon, Jun 21, 2021 at 2:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
I haven’t tried installing gcc because I am installing MET in my
group’s
research cluster and I don’t have permission to install libraries.
I wonder if instead of intel I can use gnu and run it again?
Do you think that will help?
Do I need to delete the external_libs directory?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 21, 2021, at 12:59 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up to see if you were able to make any
progress and
check in to see if you needed assistance.
Kind regards,
Julie
On Wed, Jun 16, 2021 at 11:22 AM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu>> wrote:
Hi Yakelyn.
I'm so glad that solution worked for NetCDF-CXX.
Thank you for passing along the MET files. In your config.log file I
see
the following:
Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R)
64,
Version 17.0.8.262 Build 20180907
and
gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
And, when looking up the error from your make.log file online using
the
search string:
"error: identifier "__is_assignable" is undefined"
I found the following information online from Stack Overflow (
https://stackoverflow.com/questions/50984512/intel-compiler-17-0-with-
gcc-7-1-8-1
):
Intel C++ 17 does NOT support gcc 7/8
and there is a link to the Intel 17 Release Notes:
https://software.intel.com/content/www/us/en/develop/articles/intel-c-
compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
2017.html
where it says in the release notes
Linux Developer tools component installed, including gcc, g++ and
related
tools
- gcc versions 4.3 - 6 supported
It sounds like the issue is with features that GCC 8.1's libstdc++
headers make use of which aren't supported by Intel's compiler, not
features we are using in the MET code, specifically '__is_assignable'
is a
GCC intrinsic which isn't part of the C++ standard but is used
internally
by GCC and used in GCC's libstdc++.
It looks like you will need to obtain gcc 6 and use that in place of
gcc
7.3.0. Unfortunately, once you have gcc 6, you will need to recompile
the
libraries again and then compile MET.
Julie
On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hi Julie,
Perhaps is too late, but I compiled the libraries successfully but met
didn’t compile.
I am attaching the log files.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you for trying a clean environment.
It looks like this is a known and unresolved problem in the NetCDF
repository:
https://github.com/Unidata/netcdf-cxx4/issues/61
However, it is strange that we have not encountered this error
previously
and that we have been able to build this software on many machines.
I do have an idea for something we can try to see if we can work
around
this problem and get it to build. I have changed line 580 in
compile_MET_all.sh to include "LIBS" below:
./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl -lhdf5
-lz
-lnetcdf" > configure.log 2>&1
I'm hoping this will allow the linker to find the files it needs.
I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
Please let me know how it goes.
I will be out of the office starting at 1:15 pm MDT today. If you're
able
to test quickly, I will try to reply before leaving for the day. I
hope
this helps!
Julie
On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello again,
I was busy yesterday but I run the compiler again and It stopped
compiling
NetCDF-CXX.
I am attaching the output and the config.log. Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Oh, that's great. I'm surprised by the name change, but thank you for
bringing that to my attention. Could you please run the following
command?
cp
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
Then, please uncomment the following lines in your
install_met_env.orca
file:
#export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
#export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
#export GRIB2CLIB_NAME=-lgrib2c
since the GRIB2C library is now built.
Then, please get a fresh shell for a clean environment, and try
running
the
script again. It should start with compiling HDF5 and then go on to
NetCDF. I'm wondering if there was something strange in the previous
environment that caused the build of NetCDF-CXX to fail.
Please let me know how it goes.
Julie
On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I have checked again and the libgrib2c.a is not there but I did find a
libg2c_v1.6.0.a.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Could you please send me the config.log file and make.log file
from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
Thanks!
Julie
On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Nope.
It is not there.
[cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to
run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu>>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
<compile_MET_all_new.sh.tgz>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: George McCabe
Time: Thu Jul 01 08:08:59 2021
Hi Yakelyn,
You can mount a local directory on your computer into a Docker
container so
that the files are available inside the container. We have not yet
finalized a set of best practices for using Docker with METplus in
this
way, but I believe you will want to use a bind mount to make the data
available.
https://docs.docker.com/storage/bind-mounts/
You can use a similar approach to make data that is written inside the
Docker contain via METplus commands available on your local machine if
you'd like. I personally like to ensure that I can't accidentally
modify my
input data, so I would recommend that you set up separate mounts for
input/output and make the input mount read only.
I will note that I have run into permission issues using Windows
Subsystem
for Linux 2 (WSL2) with Docker, so please be aware of that if you are
using
WSL2. Currently the METplus Docker containers are run as the root
user. On
most Docker configurations, files written as root inside a Docker
container
to a mounted local drive will inherit the permissions of the user
running
Docker. However, this is not the case using WSL2 and the files created
locally may have root permissions and cannot be removed without sudo
privileges.
If you would like the output data to remain available inside Docker
after
you have closed the Docker container but don't need to access the
files
directly on your filesystem, then you can create a Docker data volume
that
will persist after the container is removed but is controlled by
Docker.
https://docs.docker.com/storage/volumes/
Please let me know if you have any issues getting this set up.
Thanks,
George
On Wed, Jun 30, 2021 at 7:50 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hi Julie,
>
> I finally decided to use a docker container. I was wondering how can
I use
> Pointstat from MetPlus for my own data . I have run the tutorial and
> everything run but I don’t know how to get model/forecast data and
compare
> it with my observation (see attached).
>
> Appreciated.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 21, 2021, at 1:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> Installing and building with GNU could very well work and is a great
idea.
>
> Yes, you would need to delete the external_libs directory and start
fresh,
> building everything with the GNU compilers.
>
> Please let us know how it goes and don't hesitate to reach out with
any
> questions.
>
> Julie
>
> On Mon, Jun 21, 2021 at 2:08 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
>
> I haven’t tried installing gcc because I am installing MET in my
group’s
> research cluster and I don’t have permission to install libraries.
> I wonder if instead of intel I can use gnu and run it again?
>
> Do you think that will help?
>
> Do I need to delete the external_libs directory?
> Thanks!
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 21, 2021, at 12:59 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up to see if you were able to make any
progress and
> check in to see if you needed assistance.
>
> Kind regards,
> Julie
>
> On Wed, Jun 16, 2021 at 11:22 AM Julie Prestopnik <jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I'm so glad that solution worked for NetCDF-CXX.
>
> Thank you for passing along the MET files. In your config.log file
I see
> the following:
>
> Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R)
64,
> Version 17.0.8.262 Build 20180907
>
> and
>
> gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
>
>
> And, when looking up the error from your make.log file online using
the
> search string:
>
> "error: identifier "__is_assignable" is undefined"
>
>
> I found the following information online from Stack Overflow (
>
>
> https://stackoverflow.com/questions/50984512/intel-compiler-17-0-
with-gcc-7-1-8-1
> ):
>
> Intel C++ 17 does NOT support gcc 7/8
>
> and there is a link to the Intel 17 Release Notes:
>
>
>
> https://software.intel.com/content/www/us/en/develop/articles/intel-
c-compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
2017.html
>
> where it says in the release notes
>
> Linux Developer tools component installed, including gcc, g++ and
related
> tools
>
> - gcc versions 4.3 - 6 supported
>
> It sounds like the issue is with features that GCC 8.1's libstdc++
> headers make use of which aren't supported by Intel's compiler, not
> features we are using in the MET code, specifically
'__is_assignable' is a
> GCC intrinsic which isn't part of the C++ standard but is used
internally
> by GCC and used in GCC's libstdc++.
>
> It looks like you will need to obtain gcc 6 and use that in place of
gcc
> 7.3.0. Unfortunately, once you have gcc 6, you will need to
recompile the
> libraries again and then compile MET.
>
> Julie
>
>
> On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hi Julie,
>
> Perhaps is too late, but I compiled the libraries successfully but
met
> didn’t compile.
>
> I am attaching the log files.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you for trying a clean environment.
>
> It looks like this is a known and unresolved problem in the NetCDF
> repository:
> https://github.com/Unidata/netcdf-cxx4/issues/61
>
> However, it is strange that we have not encountered this error
previously
> and that we have been able to build this software on many machines.
>
> I do have an idea for something we can try to see if we can work
around
> this problem and get it to build. I have changed line 580 in
> compile_MET_all.sh to include "LIBS" below:
>
> ./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
> CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl
-lhdf5 -lz
> -lnetcdf" > configure.log 2>&1
>
>
> I'm hoping this will allow the linker to find the files it needs.
>
> I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
> the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
> Please let me know how it goes.
>
> I will be out of the office starting at 1:15 pm MDT today. If
you're able
> to test quickly, I will try to reply before leaving for the day. I
hope
> this helps!
>
> Julie
>
> On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello again,
>
> I was busy yesterday but I run the compiler again and It stopped
compiling
> NetCDF-CXX.
> I am attaching the output and the config.log. Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Oh, that's great. I'm surprised by the name change, but thank you
for
> bringing that to my attention. Could you please run the following
> command?
>
> cp
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
>
>
> Then, please uncomment the following lines in your
install_met_env.orca
> file:
>
> #export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
> #export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
> #export GRIB2CLIB_NAME=-lgrib2c
>
> since the GRIB2C library is now built.
>
> Then, please get a fresh shell for a clean environment, and try
running
> the
> script again. It should start with compiling HDF5 and then go on to
> NetCDF. I'm wondering if there was something strange in the
previous
> environment that caused the build of NetCDF-CXX to fail.
>
> Please let me know how it goes.
>
> Julie
>
>
> On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I have checked again and the libgrib2c.a is not there but I did find
a
> libg2c_v1.6.0.a.
>
>
>
> Yakelyn R. Jauregui
>
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Could you please send me the config.log file and make.log file
> from
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Nope.
> It is not there.
>
> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> HI Yakelyn. Thank you!
>
> Before we proceed with NetCDF, I see that you have "grib2.h" in your
> include.output file, but no corresponding "libgrib2c.a" file in
> lib.output. Can you please check in
> the
>
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
> directory and see if a libgrib2c.a file exists? Please let me know.
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
>
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
to
> run
> for the JPEG library? I have only installed in Linux environments
and I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu>>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
>
> I was thinking to run it using bash configure or sh configure but it
does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> ><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> ><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
> <compile_MET_all_new.sh.tgz>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu<mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
>
--
George McCabe - Software Engineer III
National Center for Atmospheric Research
Research Applications Laboratory
303-497-2768
---
My working day may not be your working day. Please do not feel obliged
to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: Yakelyn Ramos Jauregui
Time: Thu Jul 01 08:59:17 2021
Hello George,
Thank you, this is very helpful.
I think I figured how to share a local directory with docker.
However, I am wondering how can I get new forecast data in the format
of nam.t00z.awip.*.grb
I was also wondering how do I know if the netcdf observation file (see
attached) will work if I run point_stat.
Could you please point me out how do I get modeling data in the format
needed by METplus?
Thanks.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jul 1, 2021, at 7:08 AM, George McCabe via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn,
You can mount a local directory on your computer into a Docker
container so
that the files are available inside the container. We have not yet
finalized a set of best practices for using Docker with METplus in
this
way, but I believe you will want to use a bind mount to make the data
available.
https://docs.docker.com/storage/bind-mounts/
You can use a similar approach to make data that is written inside the
Docker contain via METplus commands available on your local machine if
you'd like. I personally like to ensure that I can't accidentally
modify my
input data, so I would recommend that you set up separate mounts for
input/output and make the input mount read only.
I will note that I have run into permission issues using Windows
Subsystem
for Linux 2 (WSL2) with Docker, so please be aware of that if you are
using
WSL2. Currently the METplus Docker containers are run as the root
user. On
most Docker configurations, files written as root inside a Docker
container
to a mounted local drive will inherit the permissions of the user
running
Docker. However, this is not the case using WSL2 and the files created
locally may have root permissions and cannot be removed without sudo
privileges.
If you would like the output data to remain available inside Docker
after
you have closed the Docker container but don't need to access the
files
directly on your filesystem, then you can create a Docker data volume
that
will persist after the container is removed but is controlled by
Docker.
https://docs.docker.com/storage/volumes/
Please let me know if you have any issues getting this set up.
Thanks,
George
On Wed, Jun 30, 2021 at 7:50 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hi Julie,
I finally decided to use a docker container. I was wondering how can I
use
Pointstat from MetPlus for my own data . I have run the tutorial and
everything run but I don’t know how to get model/forecast data and
compare
it with my observation (see attached).
Appreciated.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 21, 2021, at 1:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
Installing and building with GNU could very well work and is a great
idea.
Yes, you would need to delete the external_libs directory and start
fresh,
building everything with the GNU compilers.
Please let us know how it goes and don't hesitate to reach out with
any
questions.
Julie
On Mon, Jun 21, 2021 at 2:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
I haven’t tried installing gcc because I am installing MET in my
group’s
research cluster and I don’t have permission to install libraries.
I wonder if instead of intel I can use gnu and run it again?
Do you think that will help?
Do I need to delete the external_libs directory?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 21, 2021, at 12:59 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up to see if you were able to make any
progress and
check in to see if you needed assistance.
Kind regards,
Julie
On Wed, Jun 16, 2021 at 11:22 AM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu>> wrote:
Hi Yakelyn.
I'm so glad that solution worked for NetCDF-CXX.
Thank you for passing along the MET files. In your config.log file I
see
the following:
Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R)
64,
Version 17.0.8.262 Build 20180907
and
gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
And, when looking up the error from your make.log file online using
the
search string:
"error: identifier "__is_assignable" is undefined"
I found the following information online from Stack Overflow (
https://stackoverflow.com/questions/50984512/intel-compiler-17-0-with-
gcc-7-1-8-1
):
Intel C++ 17 does NOT support gcc 7/8
and there is a link to the Intel 17 Release Notes:
https://software.intel.com/content/www/us/en/develop/articles/intel-c-
compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
2017.html
where it says in the release notes
Linux Developer tools component installed, including gcc, g++ and
related
tools
- gcc versions 4.3 - 6 supported
It sounds like the issue is with features that GCC 8.1's libstdc++
headers make use of which aren't supported by Intel's compiler, not
features we are using in the MET code, specifically '__is_assignable'
is a
GCC intrinsic which isn't part of the C++ standard but is used
internally
by GCC and used in GCC's libstdc++.
It looks like you will need to obtain gcc 6 and use that in place of
gcc
7.3.0. Unfortunately, once you have gcc 6, you will need to recompile
the
libraries again and then compile MET.
Julie
On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hi Julie,
Perhaps is too late, but I compiled the libraries successfully but met
didn’t compile.
I am attaching the log files.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you for trying a clean environment.
It looks like this is a known and unresolved problem in the NetCDF
repository:
https://github.com/Unidata/netcdf-cxx4/issues/61
However, it is strange that we have not encountered this error
previously
and that we have been able to build this software on many machines.
I do have an idea for something we can try to see if we can work
around
this problem and get it to build. I have changed line 580 in
compile_MET_all.sh to include "LIBS" below:
./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl -lhdf5
-lz
-lnetcdf" > configure.log 2>&1
I'm hoping this will allow the linker to find the files it needs.
I have attached compile_MET_all_new.sh.tgz for you to try. Please
unpack
the file and try running "./compile_MET_all_new.sh
install_met_env.orca".
Please let me know how it goes.
I will be out of the office starting at 1:15 pm MDT today. If you're
able
to test quickly, I will try to reply before leaving for the day. I
hope
this helps!
Julie
On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello again,
I was busy yesterday but I run the compiler again and It stopped
compiling
NetCDF-CXX.
I am attaching the output and the config.log. Could you please help?
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Oh, that's great. I'm surprised by the name change, but thank you for
bringing that to my attention. Could you please run the following
command?
cp
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/libg2c_v1.6.0.a
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
Then, please uncomment the following lines in your
install_met_env.orca
file:
#export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
#export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
#export GRIB2CLIB_NAME=-lgrib2c
since the GRIB2C library is now built.
Then, please get a fresh shell for a clean environment, and try
running
the
script again. It should start with compiling HDF5 and then go on to
NetCDF. I'm wondering if there was something strange in the previous
environment that caused the build of NetCDF-CXX to fail.
Please let me know how it goes.
Julie
On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I have checked again and the libgrib2c.a is not there but I did find a
libg2c_v1.6.0.a.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Could you please send me the config.log file and make.log file
from
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0?
Thanks!
Julie
On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Nope.
It is not there.
[cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
HI Yakelyn. Thank you!
Before we proceed with NetCDF, I see that you have "grib2.h" in your
include.output file, but no corresponding "libgrib2c.a" file in
lib.output. Can you please check in
the
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
1.6.0
directory and see if a libgrib2c.a file exists? Please let me know.
Thanks!
Julie
On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie!
Good to hear from you.
Here are the files you requested.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
I'm so glad to hear that Jasper compiled! I have not encountered this
problem with NetCDF-CXX previously.
I am seeing things like the following in your config.log file for
NetCDF-CXX:
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/tmp/cc3l35IH.o: in function `main':
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
cxx4-4.3.0/conftest.c:44:
undefined reference to `nc_create'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5Acreate1'
/home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
/home/orca/yakelynr/programs/MET/MET_tes\
ting/external_libs/lib/libnetcdf.so: undefined reference to
`H5T_STD_U16LE_g'
which lead me to believe that maybe HDF5 and NetCDF-C did not install
properly.
could you please run "ls" on the following directories and send me the
output?
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
Could you please also send your latest install_met_env file for this
environment?
Thanks!
Julie
On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you! Jasper compiled this time.
Now I have problems with netcdf. I am attaching the log files and the
output in a txt file.
Could you please check it out?
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Thank you so much. I am sorry you're having trouble with that
package.
Please run the following instead, and this should work better:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget https://ijg.org/files/jpegsrc.v9d.tar.gz
tar -zxf jpegsrc.v9d.tar.gz
cd jpeg-9d
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
I copied the results from ls -l in that txt file.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
Hi Yakelyn.
I just wanted to follow up and see if you were able to get configure
to
run
for the JPEG library? I have only installed in Linux environments and
I
think this is our best bet to get you moving forward with MET.
Thanks!
Julie
On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
<jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
<mailto:jpresto at ucar.edu>>>>
wrote:
My apologies for the delayed response. I have had meetings most of
the
day and have not had a chance to follow up.
It looks like their configure script was not made executable. Between
these lines:
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
Please run the following to make the configure script executable:
chmod 775 configure
That should allow you to run the next ./configure line.
I hope that helps! Please let us know how it goes.
Julie
On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Thank you. I have been trying to run ./configure but I cannot.
I keep errors like these:
1.
bash: ./configure: Permission denied
Then, I changed permissions using: chmod +x configure and run
./configure
again.
2.
bash: ./configure: /bin/sh^M: bad interpreter: No such file or
directory
I was thinking to run it using bash configure or sh configure but it
does
not work.
Do you have any thoughts? Or should I contact the IT manager?
Thanks a lot. I really appreciate your help.
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
It looks like the jasper library needs to have the JPEG library
installed:
jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or directory
This is frequently a standard library that is already installed, but
it
looks like you may need to install it. Here are the instructions for
installing the JPEG library, which you should be able to copy and
paste:
cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
wget
https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-9c.tar.gz
tar -zxf libjpeg-libjpeg-9c.tar.gz
cd libjpeg-libjpeg-9c
./configure
--prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs >&
config.log
make >& make.log
make install >& make_install.log
Then, you can rerun the compile script. Since the BUFR library has
already
been installed you can uncomment the following lines from your config
files:
export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
export BUFRLIB_NAME=-lbufr
so that you don't have to wait for that library to be installed again.
Please give that a try and let us know if you have any questions.
Julie
On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu
<mailto:met_help at ucar.edu>>
wrote:
<URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
Hello Julie,
Here the log files.
Thanks!
Yakelyn R. Jauregui
Graduate Student
Department of Atmospheric Sciences
319, ATG Building
Seattle, WA 98195-1640
On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
<met_help at ucar.edu<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>
<mailto:met_help at ucar.edu>> wrote:
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
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National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
<mailto:jpresto at ucar.edu>
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obliged to
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<compile_MET_all_new.sh.tgz>
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
Julie Prestopnik (she/her)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email:
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
--
George McCabe - Software Engineer III
National Center for Atmospheric Research
Research Applications Laboratory
303-497-2768
---
My working day may not be your working day. Please do not feel obliged
to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: About MET installation - cmake version in Mac
From: George McCabe
Time: Mon Jul 12 11:46:38 2021
Hi Yakelyn,
The MET tools can read GRIB data directly. Specifically NAM forecast
files have been read by the tools. The MET User's Guide has a lot of
information about how to read data that should be helpful:
https://met.readthedocs.io/en/latest/Users_Guide/data_io.html
Also, here is a use case that uses PointStat to read NAM data (search
for FCST_POINT_STAT_INPUT_TEMPLATE to see an example of how files with
that naming are found):
https://metplus.readthedocs.io/en/latest/generated/met_tool_wrapper/PointStat/PointStat.html?highlight=nam
Gridded NetCDF files that are CF compliant can also be read directly
into the tools. The file you provided appears to be CF compliant, but
it looks like the observations are not gridded. You can utilize the
Python Embedding logic to write a script that can read the data and
define the appropriate information so that MET can read it. ASCII2NC
is the tool that you will likely need to use to convert point
observations to a format that MET can read. More information on using
Python Embedding for point observations can be found here:
https://met.readthedocs.io/en/latest/Users_Guide/appendixF.html#python-
embedding-for-point-observations
Please let me know if you have any other questions or issues getting
this set up.
Thanks,
George
On Thu Jul 01 08:59:17 2021, yakelynr at uw.edu wrote:
> Hello George,
>
> Thank you, this is very helpful.
> I think I figured how to share a local directory with docker.
> However, I am wondering how can I get new forecast data in the
format
> of nam.t00z.awip.*.grb
> I was also wondering how do I know if the netcdf observation file
(see
> attached) will work if I run point_stat.
>
> Could you please point me out how do I get modeling data in the
format
> needed by METplus?
>
> Thanks.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jul 1, 2021, at 7:08 AM, George McCabe via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn,
>
> You can mount a local directory on your computer into a Docker
> container so
> that the files are available inside the container. We have not yet
> finalized a set of best practices for using Docker with METplus in
> this
> way, but I believe you will want to use a bind mount to make the
data
> available.
>
> https://docs.docker.com/storage/bind-mounts/
>
> You can use a similar approach to make data that is written inside
the
> Docker contain via METplus commands available on your local machine
if
> you'd like. I personally like to ensure that I can't accidentally
> modify my
> input data, so I would recommend that you set up separate mounts for
> input/output and make the input mount read only.
>
> I will note that I have run into permission issues using Windows
> Subsystem
> for Linux 2 (WSL2) with Docker, so please be aware of that if you
are
> using
> WSL2. Currently the METplus Docker containers are run as the root
> user. On
> most Docker configurations, files written as root inside a Docker
> container
> to a mounted local drive will inherit the permissions of the user
> running
> Docker. However, this is not the case using WSL2 and the files
created
> locally may have root permissions and cannot be removed without sudo
> privileges.
>
> If you would like the output data to remain available inside Docker
> after
> you have closed the Docker container but don't need to access the
> files
> directly on your filesystem, then you can create a Docker data
volume
> that
> will persist after the container is removed but is controlled by
> Docker.
>
> https://docs.docker.com/storage/volumes/
>
> Please let me know if you have any issues getting this set up.
>
> Thanks,
> George
>
> On Wed, Jun 30, 2021 at 7:50 PM Yakelyn Ramos Jauregui via RT <
> met_help at ucar.edu<mailto:met_help at ucar.edu>> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hi Julie,
>
> I finally decided to use a docker container. I was wondering how can
I
> use
> Pointstat from MetPlus for my own data . I have run the tutorial and
> everything run but I don’t know how to get model/forecast data and
> compare
> it with my observation (see attached).
>
> Appreciated.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 21, 2021, at 1:23 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> Installing and building with GNU could very well work and is a great
> idea.
>
> Yes, you would need to delete the external_libs directory and start
> fresh,
> building everything with the GNU compilers.
>
> Please let us know how it goes and don't hesitate to reach out with
> any
> questions.
>
> Julie
>
> On Mon, Jun 21, 2021 at 2:08 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
>
> I haven’t tried installing gcc because I am installing MET in my
> group’s
> research cluster and I don’t have permission to install libraries.
> I wonder if instead of intel I can use gnu and run it again?
>
> Do you think that will help?
>
> Do I need to delete the external_libs directory?
> Thanks!
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 21, 2021, at 12:59 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up to see if you were able to make any
> progress and
> check in to see if you needed assistance.
>
> Kind regards,
> Julie
>
> On Wed, Jun 16, 2021 at 11:22 AM Julie Prestopnik
> <jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I'm so glad that solution worked for NetCDF-CXX.
>
> Thank you for passing along the MET files. In your config.log file
I
> see
> the following:
>
> Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R)
> 64,
> Version 17.0.8.262 Build 20180907
>
> and
>
> gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0)
>
>
> And, when looking up the error from your make.log file online using
> the
> search string:
>
> "error: identifier "__is_assignable" is undefined"
>
>
> I found the following information online from Stack Overflow (
>
>
> https://stackoverflow.com/questions/50984512/intel-compiler-17-0-
with-
> gcc-7-1-8-1
> ):
>
> Intel C++ 17 does NOT support gcc 7/8
>
> and there is a link to the Intel 17 Release Notes:
>
>
>
> https://software.intel.com/content/www/us/en/develop/articles/intel-
c-
> compiler-170-for-linux-release-notes-for-intel-parallel-studio-xe-
> 2017.html
>
> where it says in the release notes
>
> Linux Developer tools component installed, including gcc, g++ and
> related
> tools
>
> - gcc versions 4.3 - 6 supported
>
> It sounds like the issue is with features that GCC 8.1's libstdc++
> headers make use of which aren't supported by Intel's compiler, not
> features we are using in the MET code, specifically
'__is_assignable'
> is a
> GCC intrinsic which isn't part of the C++ standard but is used
> internally
> by GCC and used in GCC's libstdc++.
>
> It looks like you will need to obtain gcc 6 and use that in place of
> gcc
> 7.3.0. Unfortunately, once you have gcc 6, you will need to
recompile
> the
> libraries again and then compile MET.
>
> Julie
>
>
> On Tue, Jun 15, 2021 at 2:35 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hi Julie,
>
> Perhaps is too late, but I compiled the libraries successfully but
met
> didn’t compile.
>
> I am attaching the log files.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 15, 2021, at 11:44 AM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you for trying a clean environment.
>
> It looks like this is a known and unresolved problem in the NetCDF
> repository:
> https://github.com/Unidata/netcdf-cxx4/issues/61
>
> However, it is strange that we have not encountered this error
> previously
> and that we have been able to build this software on many machines.
>
> I do have an idea for something we can try to see if we can work
> around
> this problem and get it to build. I have changed line 580 in
> compile_MET_all.sh to include "LIBS" below:
>
> ./configure --prefix=${LIB_DIR} LDFLAGS=-L${LIB_DIR}/lib
> CPPFLAGS=-I${LIB_DIR}/include LIBS="-L${LIB_DIR}/lib -lhdf5_hl
-lhdf5
> -lz
> -lnetcdf" > configure.log 2>&1
>
>
> I'm hoping this will allow the linker to find the files it needs.
>
> I have attached compile_MET_all_new.sh.tgz for you to try. Please
> unpack
> the file and try running "./compile_MET_all_new.sh
> install_met_env.orca".
> Please let me know how it goes.
>
> I will be out of the office starting at 1:15 pm MDT today. If
you're
> able
> to test quickly, I will try to reply before leaving for the day. I
> hope
> this helps!
>
> Julie
>
> On Tue, Jun 15, 2021 at 11:56 AM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello again,
>
> I was busy yesterday but I run the compiler again and It stopped
> compiling
> NetCDF-CXX.
> I am attaching the output and the config.log. Could you please help?
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 2:26 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Oh, that's great. I'm surprised by the name change, but thank you
for
> bringing that to my attention. Could you please run the following
> command?
>
> cp
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
> 1.6.0/libg2c_v1.6.0.a
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
>
1.6.0/home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib/libgrib2c.a
>
>
> Then, please uncomment the following lines in your
> install_met_env.orca
> file:
>
> #export MET_GRIB2CLIB=${EXTERNAL_LIBS}/lib
> #export MET_GRIB2CINC=${EXTERNAL_LIBS}/include
> #export GRIB2CLIB_NAME=-lgrib2c
>
> since the GRIB2C library is now built.
>
> Then, please get a fresh shell for a clean environment, and try
> running
> the
> script again. It should start with compiling HDF5 and then go on to
> NetCDF. I'm wondering if there was something strange in the
previous
> environment that caused the build of NetCDF-CXX to fail.
>
> Please let me know how it goes.
>
> Julie
>
>
> On Mon, Jun 14, 2021 at 2:54 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I have checked again and the libgrib2c.a is not there but I did find
a
> libg2c_v1.6.0.a.
>
>
>
> Yakelyn R. Jauregui
>
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:49 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Could you please send me the config.log file and make.log file
> from
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
> 1.6.0?
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 2:32 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Nope.
> It is not there.
>
> [cid:4F4C90D5-AE29-4F21-B767-EED05082511D]
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 1:28 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> HI Yakelyn. Thank you!
>
> Before we proceed with NetCDF, I see that you have "grib2.h" in your
> include.output file, but no corresponding "libgrib2c.a" file in
> lib.output. Can you please check in
> the
>
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/g2clib/g2clib-
> 1.6.0
> directory and see if a libgrib2c.a file exists? Please let me know.
>
> Thanks!
>
> Julie
>
> On Mon, Jun 14, 2021 at 1:30 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie!
> Good to hear from you.
>
> Here are the files you requested.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 14, 2021, at 12:23 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> I'm so glad to hear that Jasper compiled! I have not encountered
this
> problem with NetCDF-CXX previously.
>
> I am seeing things like the following in your config.log file for
> NetCDF-CXX:
>
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
> linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /tmp/cc3l35IH.o: in function `main':
>
>
>
>
>
>
>
>
/home/orca/yakelynr/programs/MET/MET_testing/external_libs/netcdf/netcdf-
> cxx4-4.3.0/conftest.c:44:
> undefined reference to `nc_create'
>
>
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
> linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5Acreate1'
>
>
>
>
>
>
>
> /home/disk/p/yakelynr/anaconda3/bin/../lib/gcc/x86_64-conda_cos6-
> linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld:
> /home/orca/yakelynr/programs/MET/MET_tes\
> ting/external_libs/lib/libnetcdf.so: undefined reference to
> `H5T_STD_U16LE_g'
>
>
> which lead me to believe that maybe HDF5 and NetCDF-C did not
install
> properly.
>
> could you please run "ls" on the following directories and send me
the
> output?
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/lib
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/include
>
> Could you please also send your latest install_met_env file for this
> environment?
>
> Thanks!
>
> Julie
>
>
>
> On Fri, Jun 11, 2021 at 5:08 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you! Jasper compiled this time.
>
> Now I have problems with netcdf. I am attaching the log files and
the
> output in a txt file.
>
> Could you please check it out?
>
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 2:24 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Thank you so much. I am sorry you're having trouble with that
> package.
>
> Please run the following instead, and this should work better:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget https://ijg.org/files/jpegsrc.v9d.tar.gz
> tar -zxf jpegsrc.v9d.tar.gz
> cd jpeg-9d
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
> already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Fri, Jun 11, 2021 at 3:03 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> I copied the results from ls -l in that txt file.
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 11, 2021, at 1:49 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> Hi Yakelyn.
>
> I just wanted to follow up and see if you were able to get configure
> to
> run
> for the JPEG library? I have only installed in Linux environments
and
> I
> think this is our best bet to get you moving forward with MET.
>
> Thanks!
>
> Julie
>
> On Thu, Jun 10, 2021 at 1:40 PM Julie Prestopnik
> <jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu><mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu>><mailto:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
> <mailto:jpresto at ucar.edu>>>>
> wrote:
>
> My apologies for the delayed response. I have had meetings most of
> the
> day and have not had a chance to follow up.
>
> It looks like their configure script was not made executable.
Between
> these lines:
>
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
>
>
> Please run the following to make the configure script executable:
>
> chmod 775 configure
>
>
> That should allow you to run the next ./configure line.
>
> I hope that helps! Please let us know how it goes.
>
> Julie
>
> On Wed, Jun 9, 2021 at 4:00 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Thank you. I have been trying to run ./configure but I cannot.
> I keep errors like these:
>
> 1.
> bash: ./configure: Permission denied
> Then, I changed permissions using: chmod +x configure and run
> ./configure
> again.
>
> 2.
> bash: ./configure: /bin/sh^M: bad interpreter: No such file or
> directory
>
> I was thinking to run it using bash configure or sh configure but it
> does
> not work.
>
> Do you have any thoughts? Or should I contact the IT manager?
>
> Thanks a lot. I really appreciate your help.
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 12:35 PM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> It looks like the jasper library needs to have the JPEG library
> installed:
>
> jpg_jpeglib.h:74:10: fatal error: jpeglib.h: No such file or
directory
>
>
> This is frequently a standard library that is already installed, but
> it
> looks like you may need to install it. Here are the instructions
for
> installing the JPEG library, which you should be able to copy and
> paste:
>
> cd /home/orca/yakelynr/programs/MET/MET_testing/external_libs
> wget
> https://github.com/winlibs/libjpeg/archive/refs/tags/libjpeg-
9c.tar.gz
> tar -zxf libjpeg-libjpeg-9c.tar.gz
> cd libjpeg-libjpeg-9c
> ./configure
> --prefix=/home/orca/yakelynr/programs/MET/MET_testing/external_libs
>&
> config.log
> make >& make.log
> make install >& make_install.log
>
>
> Then, you can rerun the compile script. Since the BUFR library has
> already
> been installed you can uncomment the following lines from your
config
> files:
> export MET_BUFRLIB=${EXTERNAL_LIBS}/lib
> export BUFRLIB_NAME=-lbufr
> so that you don't have to wait for that library to be installed
again.
>
> Please give that a try and let us know if you have any questions.
>
> Julie
>
> On Wed, Jun 9, 2021 at 12:59 PM Yakelyn Ramos Jauregui via RT <
>
met_help at ucar.edu<mailto:met_help at ucar.edu><mailto:met_help at ucar.edu><mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu
> <mailto:met_help at ucar.edu>>
> wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=100166 >
>
> Hello Julie,
>
> Here the log files.
> Thanks!
>
>
> Yakelyn R. Jauregui
>
> Graduate Student
> Department of Atmospheric Sciences
> 319, ATG Building
> Seattle, WA 98195-1640
>
> On Jun 9, 2021, at 11:54 AM, Julie Prestopnik via RT
> <met_help at ucar.edu<mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>
> <mailto:met_help at ucar.edu>> wrote:
>
> /home/orca/yakelynr/programs/MET/MET_testing/external_libs/jasper/
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu
> <mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
> <compile_MET_all_new.sh.tgz>
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
>
jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> Julie Prestopnik (she/her)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email:
> jpresto at ucar.edu<mailto:jpresto at ucar.edu><mailto:jpresto at ucar.edu>
>
> My working day may not be your working day. Please do not feel
> obliged to
> reply to this email outside of your normal working hours.
>
>
>
>
> --
> George McCabe - Software Engineer III
> National Center for Atmospheric Research
> Research Applications Laboratory
> 303-497-2768
> ---
> My working day may not be your working day. Please do not feel
obliged
> to
> reply to this email outside of your normal working hours.
>
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