[Met_help] [rt.rap.ucar.edu #97638] History for no gsl package in met viewer
John Halley Gotway via RT
met_help at ucar.edu
Tue Jan 19 17:11:30 MST 2021
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
I replaced the tutorial database with my own and reloaded it in MET Viewer.
I plotted NBR_FSS without confidence intervals, but when I tried to add
bootstrap confidence intervals I got an error about no 'gsl' package.
Database query time for mv_met_out 0:00:01.101
Save to file time for mv_met_out 0:00:01.613
RunningRscript /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
==== Start Rscript error ====
Error in library(gsl) : there is no package called 'gsl'
Execution halted
==== End Rscript error ====
Rscript time 0:00:00.313
Is this a problem with the server, or something I can fix on my end?
Thanks for your help.
Dave
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: no gsl package in met viewer
From: John Halley Gotway
Time: Mon Nov 30 10:59:41 2020
Hi Dave,
Can you please send me the METviewer XML file that resulted in this
error?
Or just tell me the timestamp that was used so that I can go find the
XML
on the server?
There's a little detail I should tell you. You can see the METviewer
history on the left hand side of the GUI. By default, it only shows
you
successful XML's (e.g. only those that produced a plot)... but you can
select "All" to see XML's that resulted in an error. See the attached
video
to illustrate.
Thanks,
John
On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT
<met_help at ucar.edu>
wrote:
>
> Fri Nov 27 12:30:19 2020: Request 97638 was acted upon.
> Transaction: Ticket created by ahijevyc
> Queue: met_help
> Subject: no gsl package in met viewer
> Owner: Nobody
> Requestors: ahijevyc at ucar.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
>
>
> I replaced the tutorial database with my own and reloaded it in MET
Viewer.
> I plotted NBR_FSS without confidence intervals, but when I tried to
add
> bootstrap confidence intervals I got an error about no 'gsl'
package.
>
> Database query time for mv_met_out 0:00:01.101
> Save to file time for mv_met_out 0:00:01.613
>
> RunningRscript
/opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> ==== Start Rscript error ====
> Error in library(gsl) : there is no package called 'gsl'
> Execution halted
> ==== End Rscript error ====
> Rscript time 0:00:00.313
>
> Is this a problem with the server, or something I can fix on my end?
>
> Thanks for your help.
> Dave
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: David Ahijevych
Time: Mon Nov 30 11:45:10 2020
Hi John!
The xml was 20201127_192046
The history tab is new to me. Thanks for the tip.
On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Hi Dave,
>
> Can you please send me the METviewer XML file that resulted in this
error?
> Or just tell me the timestamp that was used so that I can go find
the XML
> on the server?
>
> There's a little detail I should tell you. You can see the METviewer
> history on the left hand side of the GUI. By default, it only shows
you
> successful XML's (e.g. only those that produced a plot)... but you
can
> select "All" to see XML's that resulted in an error. See the
attached video
> to illustrate.
>
> Thanks,
> John
>
> On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT
<met_help at ucar.edu
> >
> wrote:
>
> >
> > Fri Nov 27 12:30:19 2020: Request 97638 was acted upon.
> > Transaction: Ticket created by ahijevyc
> > Queue: met_help
> > Subject: no gsl package in met viewer
> > Owner: Nobody
> > Requestors: ahijevyc at ucar.edu
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> >
> >
> > I replaced the tutorial database with my own and reloaded it in
MET
> Viewer.
> > I plotted NBR_FSS without confidence intervals, but when I tried
to add
> > bootstrap confidence intervals I got an error about no 'gsl'
package.
> >
> > Database query time for mv_met_out 0:00:01.101
> > Save to file time for mv_met_out 0:00:01.613
> >
> > RunningRscript
/opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > ==== Start Rscript error ====
> > Error in library(gsl) : there is no package called 'gsl'
> > Execution halted
> > ==== End Rscript error ====
> > Rscript time 0:00:00.313
> >
> > Is this a problem with the server, or something I can fix on my
end?
> >
> > Thanks for your help.
> > Dave
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: John Halley Gotway
Time: Mon Nov 30 12:42:25 2020
Dave,
I don't see an XML file with that timestamp on the DTCenter METviewer
server. And that makes me realize that your question is about running
METviewer locally on your laptop using a Docker container. Is that
correct?
Once I confirm that, I'll know where to go debug.
Thanks,
John
On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
>
> Hi John!
> The xml was 20201127_192046
>
> The history tab is new to me. Thanks for the tip.
>
> On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Hi Dave,
> >
> > Can you please send me the METviewer XML file that resulted in
this
> error?
> > Or just tell me the timestamp that was used so that I can go find
the XML
> > on the server?
> >
> > There's a little detail I should tell you. You can see the
METviewer
> > history on the left hand side of the GUI. By default, it only
shows you
> > successful XML's (e.g. only those that produced a plot)... but you
can
> > select "All" to see XML's that resulted in an error. See the
attached
> video
> > to illustrate.
> >
> > Thanks,
> > John
> >
> > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT <
> met_help at ucar.edu
> > >
> > wrote:
> >
> > >
> > > Fri Nov 27 12:30:19 2020: Request 97638 was acted upon.
> > > Transaction: Ticket created by ahijevyc
> > > Queue: met_help
> > > Subject: no gsl package in met viewer
> > > Owner: Nobody
> > > Requestors: ahijevyc at ucar.edu
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> >
> > >
> > >
> > > I replaced the tutorial database with my own and reloaded it in
MET
> > Viewer.
> > > I plotted NBR_FSS without confidence intervals, but when I tried
to add
> > > bootstrap confidence intervals I got an error about no 'gsl'
package.
> > >
> > > Database query time for mv_met_out 0:00:01.101
> > > Save to file time for mv_met_out 0:00:01.613
> > >
> > > RunningRscript
/opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > ==== Start Rscript error ====
> > > Error in library(gsl) : there is no package called 'gsl'
> > > Execution halted
> > > ==== End Rscript error ====
> > > Rscript time 0:00:00.313
> > >
> > > Is this a problem with the server, or something I can fix on my
end?
> > >
> > > Thanks for your help.
> > > Dave
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: David Ahijevych
Time: Mon Nov 30 13:40:39 2020
Yes, that is correct--on my laptop using a Docker container.
Sorry about not specifying that.
On Mon, Nov 30, 2020 at 12:42 PM John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Dave,
>
> I don't see an XML file with that timestamp on the DTCenter
METviewer
> server. And that makes me realize that your question is about
running
> METviewer locally on your laptop using a Docker container. Is that
correct?
>
> Once I confirm that, I'll know where to go debug.
>
> Thanks,
> John
>
> On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT
<met_help at ucar.edu
> >
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> >
> > Hi John!
> > The xml was 20201127_192046
> >
> > The history tab is new to me. Thanks for the tip.
> >
> > On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Hi Dave,
> > >
> > > Can you please send me the METviewer XML file that resulted in
this
> > error?
> > > Or just tell me the timestamp that was used so that I can go
find the
> XML
> > > on the server?
> > >
> > > There's a little detail I should tell you. You can see the
METviewer
> > > history on the left hand side of the GUI. By default, it only
shows you
> > > successful XML's (e.g. only those that produced a plot)... but
you can
> > > select "All" to see XML's that resulted in an error. See the
attached
> > video
> > > to illustrate.
> > >
> > > Thanks,
> > > John
> > >
> > > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT <
> > met_help at ucar.edu
> > > >
> > > wrote:
> > >
> > > >
> > > > Fri Nov 27 12:30:19 2020: Request 97638 was acted upon.
> > > > Transaction: Ticket created by ahijevyc
> > > > Queue: met_help
> > > > Subject: no gsl package in met viewer
> > > > Owner: Nobody
> > > > Requestors: ahijevyc at ucar.edu
> > > > Status: new
> > > > Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > >
> > > >
> > > >
> > > > I replaced the tutorial database with my own and reloaded it
in MET
> > > Viewer.
> > > > I plotted NBR_FSS without confidence intervals, but when I
tried to
> add
> > > > bootstrap confidence intervals I got an error about no 'gsl'
package.
> > > >
> > > > Database query time for mv_met_out 0:00:01.101
> > > > Save to file time for mv_met_out 0:00:01.613
> > > >
> > > > RunningRscript
> /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > > ==== Start Rscript error ====
> > > > Error in library(gsl) : there is no package called 'gsl'
> > > > Execution halted
> > > > ==== End Rscript error ====
> > > > Rscript time 0:00:00.313
> > > >
> > > > Is this a problem with the server, or something I can fix on
my end?
> > > >
> > > > Thanks for your help.
> > > > Dave
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: John Halley Gotway
Time: Mon Nov 30 14:42:43 2020
Dave,
OK, I was able to replicate this error anytime I try to "aggregate"
results
using METviewer in the Docker container. I checked all the existing
R-scripts and see that they include the following R packages:
boot, data.table, *gsl*, parallel, plotrix, *reticulate*, stats
I logged into the container using bash, launched R, and manually
checked
each of these. Turns out that gsl and reticulate are both missing from
the
containerized version of R. I'll need to update the Dockerfile and
commit
that change to METviewer. That'll trigger DockerHub to rebuild those
images. Once that's all done, you should be able to pull the updated
version of the image.
I'll let you know how it all goes.
Thanks,
John
On Mon, Nov 30, 2020 at 1:41 PM David Ahijevych via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
>
> Yes, that is correct--on my laptop using a Docker container.
> Sorry about not specifying that.
>
> On Mon, Nov 30, 2020 at 12:42 PM John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Dave,
> >
> > I don't see an XML file with that timestamp on the DTCenter
METviewer
> > server. And that makes me realize that your question is about
running
> > METviewer locally on your laptop using a Docker container. Is that
> correct?
> >
> > Once I confirm that, I'll know where to go debug.
> >
> > Thanks,
> > John
> >
> > On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT <
> met_help at ucar.edu
> > >
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> > >
> > > Hi John!
> > > The xml was 20201127_192046
> > >
> > > The history tab is new to me. Thanks for the tip.
> > >
> > > On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Hi Dave,
> > > >
> > > > Can you please send me the METviewer XML file that resulted in
this
> > > error?
> > > > Or just tell me the timestamp that was used so that I can go
find the
> > XML
> > > > on the server?
> > > >
> > > > There's a little detail I should tell you. You can see the
METviewer
> > > > history on the left hand side of the GUI. By default, it only
shows
> you
> > > > successful XML's (e.g. only those that produced a plot)... but
you
> can
> > > > select "All" to see XML's that resulted in an error. See the
attached
> > > video
> > > > to illustrate.
> > > >
> > > > Thanks,
> > > > John
> > > >
> > > > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT <
> > > met_help at ucar.edu
> > > > >
> > > > wrote:
> > > >
> > > > >
> > > > > Fri Nov 27 12:30:19 2020: Request 97638 was acted upon.
> > > > > Transaction: Ticket created by ahijevyc
> > > > > Queue: met_help
> > > > > Subject: no gsl package in met viewer
> > > > > Owner: Nobody
> > > > > Requestors: ahijevyc at ucar.edu
> > > > > Status: new
> > > > > Ticket <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > > >
> > > > >
> > > > >
> > > > > I replaced the tutorial database with my own and reloaded it
in MET
> > > > Viewer.
> > > > > I plotted NBR_FSS without confidence intervals, but when I
tried to
> > add
> > > > > bootstrap confidence intervals I got an error about no 'gsl'
> package.
> > > > >
> > > > > Database query time for mv_met_out 0:00:01.101
> > > > > Save to file time for mv_met_out 0:00:01.613
> > > > >
> > > > > RunningRscript
> > /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > > > ==== Start Rscript error ====
> > > > > Error in library(gsl) : there is no package called 'gsl'
> > > > > Execution halted
> > > > > ==== End Rscript error ====
> > > > > Rscript time 0:00:00.313
> > > > >
> > > > > Is this a problem with the server, or something I can fix on
my
> end?
> > > > >
> > > > > Thanks for your help.
> > > > > Dave
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: David Ahijevych
Time: Mon Nov 30 15:49:39 2020
Awesome, thanks!
On Mon, Nov 30, 2020 at 2:43 PM John Halley Gotway via RT
<met_help at ucar.edu>
wrote:
> Dave,
>
> OK, I was able to replicate this error anytime I try to "aggregate"
results
> using METviewer in the Docker container. I checked all the existing
> R-scripts and see that they include the following R packages:
>
> boot, data.table, *gsl*, parallel, plotrix, *reticulate*, stats
>
> I logged into the container using bash, launched R, and manually
checked
> each of these. Turns out that gsl and reticulate are both missing
from the
> containerized version of R. I'll need to update the Dockerfile and
commit
> that change to METviewer. That'll trigger DockerHub to rebuild those
> images. Once that's all done, you should be able to pull the updated
> version of the image.
>
> I'll let you know how it all goes.
>
> Thanks,
> John
>
> On Mon, Nov 30, 2020 at 1:41 PM David Ahijevych via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> >
> > Yes, that is correct--on my laptop using a Docker container.
> > Sorry about not specifying that.
> >
> > On Mon, Nov 30, 2020 at 12:42 PM John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Dave,
> > >
> > > I don't see an XML file with that timestamp on the DTCenter
METviewer
> > > server. And that makes me realize that your question is about
running
> > > METviewer locally on your laptop using a Docker container. Is
that
> > correct?
> > >
> > > Once I confirm that, I'll know where to go debug.
> > >
> > > Thanks,
> > > John
> > >
> > > On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT <
> > met_help at ucar.edu
> > > >
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
>
> > > >
> > > > Hi John!
> > > > The xml was 20201127_192046
> > > >
> > > > The history tab is new to me. Thanks for the tip.
> > > >
> > > > On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Hi Dave,
> > > > >
> > > > > Can you please send me the METviewer XML file that resulted
in this
> > > > error?
> > > > > Or just tell me the timestamp that was used so that I can go
find
> the
> > > XML
> > > > > on the server?
> > > > >
> > > > > There's a little detail I should tell you. You can see the
> METviewer
> > > > > history on the left hand side of the GUI. By default, it
only shows
> > you
> > > > > successful XML's (e.g. only those that produced a plot)...
but you
> > can
> > > > > select "All" to see XML's that resulted in an error. See the
> attached
> > > > video
> > > > > to illustrate.
> > > > >
> > > > > Thanks,
> > > > > John
> > > > >
> > > > > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > Fri Nov 27 12:30:19 2020: Request 97638 was acted upon.
> > > > > > Transaction: Ticket created by ahijevyc
> > > > > > Queue: met_help
> > > > > > Subject: no gsl package in met viewer
> > > > > > Owner: Nobody
> > > > > > Requestors: ahijevyc at ucar.edu
> > > > > > Status: new
> > > > > > Ticket <URL:
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > > > >
> > > > > >
> > > > > >
> > > > > > I replaced the tutorial database with my own and reloaded
it in
> MET
> > > > > Viewer.
> > > > > > I plotted NBR_FSS without confidence intervals, but when I
tried
> to
> > > add
> > > > > > bootstrap confidence intervals I got an error about no
'gsl'
> > package.
> > > > > >
> > > > > > Database query time for mv_met_out 0:00:01.101
> > > > > > Save to file time for mv_met_out 0:00:01.613
> > > > > >
> > > > > > RunningRscript
> > > /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > > > > ==== Start Rscript error ====
> > > > > > Error in library(gsl) : there is no package called 'gsl'
> > > > > > Execution halted
> > > > > > ==== End Rscript error ====
> > > > > > Rscript time 0:00:00.313
> > > > > >
> > > > > > Is this a problem with the server, or something I can fix
on my
> > end?
> > > > > >
> > > > > > Thanks for your help.
> > > > > > Dave
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: John Halley Gotway
Time: Wed Dec 02 10:01:58 2020
Dave,
OK, here's the issue:
https://github.com/dtcenter/METviewer/issues/226
And it's been fixed for METviewer version 3.1 and automatically
rebuilt by
DockerHub.
You can try...
1. bring down METviewer: docker-compose down
2. pull the latest version: docker pull dtcenter/metviewer
3. relaunch: docker-compose up -d
Please let me know how that goes.
Thanks,
John
On Mon, Nov 30, 2020 at 3:49 PM David Ahijevych via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
>
> Awesome, thanks!
>
> On Mon, Nov 30, 2020 at 2:43 PM John Halley Gotway via RT <
> met_help at ucar.edu>
> wrote:
>
> > Dave,
> >
> > OK, I was able to replicate this error anytime I try to
"aggregate"
> results
> > using METviewer in the Docker container. I checked all the
existing
> > R-scripts and see that they include the following R packages:
> >
> > boot, data.table, *gsl*, parallel, plotrix, *reticulate*, stats
> >
> > I logged into the container using bash, launched R, and manually
checked
> > each of these. Turns out that gsl and reticulate are both missing
from
> the
> > containerized version of R. I'll need to update the Dockerfile and
commit
> > that change to METviewer. That'll trigger DockerHub to rebuild
those
> > images. Once that's all done, you should be able to pull the
updated
> > version of the image.
> >
> > I'll let you know how it all goes.
> >
> > Thanks,
> > John
> >
> > On Mon, Nov 30, 2020 at 1:41 PM David Ahijevych via RT <
> met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> > >
> > > Yes, that is correct--on my laptop using a Docker container.
> > > Sorry about not specifying that.
> > >
> > > On Mon, Nov 30, 2020 at 12:42 PM John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Dave,
> > > >
> > > > I don't see an XML file with that timestamp on the DTCenter
METviewer
> > > > server. And that makes me realize that your question is about
running
> > > > METviewer locally on your laptop using a Docker container. Is
that
> > > correct?
> > > >
> > > > Once I confirm that, I'll know where to go debug.
> > > >
> > > > Thanks,
> > > > John
> > > >
> > > > On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT <
> > > met_help at ucar.edu
> > > > >
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> > > > >
> > > > > Hi John!
> > > > > The xml was 20201127_192046
> > > > >
> > > > > The history tab is new to me. Thanks for the tip.
> > > > >
> > > > > On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > > Hi Dave,
> > > > > >
> > > > > > Can you please send me the METviewer XML file that
resulted in
> this
> > > > > error?
> > > > > > Or just tell me the timestamp that was used so that I can
go find
> > the
> > > > XML
> > > > > > on the server?
> > > > > >
> > > > > > There's a little detail I should tell you. You can see the
> > METviewer
> > > > > > history on the left hand side of the GUI. By default, it
only
> shows
> > > you
> > > > > > successful XML's (e.g. only those that produced a plot)...
but
> you
> > > can
> > > > > > select "All" to see XML's that resulted in an error. See
the
> > attached
> > > > > video
> > > > > > to illustrate.
> > > > > >
> > > > > > Thanks,
> > > > > > John
> > > > > >
> > > > > > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT <
> > > > > met_help at ucar.edu
> > > > > > >
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > Fri Nov 27 12:30:19 2020: Request 97638 was acted upon.
> > > > > > > Transaction: Ticket created by ahijevyc
> > > > > > > Queue: met_help
> > > > > > > Subject: no gsl package in met viewer
> > > > > > > Owner: Nobody
> > > > > > > Requestors: ahijevyc at ucar.edu
> > > > > > > Status: new
> > > > > > > Ticket <URL:
> > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > > > > >
> > > > > > >
> > > > > > >
> > > > > > > I replaced the tutorial database with my own and
reloaded it in
> > MET
> > > > > > Viewer.
> > > > > > > I plotted NBR_FSS without confidence intervals, but when
I
> tried
> > to
> > > > add
> > > > > > > bootstrap confidence intervals I got an error about no
'gsl'
> > > package.
> > > > > > >
> > > > > > > Database query time for mv_met_out 0:00:01.101
> > > > > > > Save to file time for mv_met_out 0:00:01.613
> > > > > > >
> > > > > > > RunningRscript
> > > > /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > > > > > ==== Start Rscript error ====
> > > > > > > Error in library(gsl) : there is no package called 'gsl'
> > > > > > > Execution halted
> > > > > > > ==== End Rscript error ====
> > > > > > > Rscript time 0:00:00.313
> > > > > > >
> > > > > > > Is this a problem with the server, or something I can
fix on my
> > > end?
> > > > > > >
> > > > > > > Thanks for your help.
> > > > > > > Dave
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: David Ahijevych
Time: Wed Dec 02 12:39:36 2020
Bingo! Success plotting confidence intervals on aggregated FSS.
On Wed, Dec 2, 2020 at 10:11 AM John Halley Gotway via RT
<met_help at ucar.edu>
wrote:
> Dave,
>
> OK, here's the issue:
> https://github.com/dtcenter/METviewer/issues/226
>
> And it's been fixed for METviewer version 3.1 and automatically
rebuilt by
> DockerHub.
>
> You can try...
> 1. bring down METviewer: docker-compose down
> 2. pull the latest version: docker pull dtcenter/metviewer
> 3. relaunch: docker-compose up -d
>
> Please let me know how that goes.
>
> Thanks,
> John
>
>
>
> On Mon, Nov 30, 2020 at 3:49 PM David Ahijevych via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> >
> > Awesome, thanks!
> >
> > On Mon, Nov 30, 2020 at 2:43 PM John Halley Gotway via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Dave,
> > >
> > > OK, I was able to replicate this error anytime I try to
"aggregate"
> > results
> > > using METviewer in the Docker container. I checked all the
existing
> > > R-scripts and see that they include the following R packages:
> > >
> > > boot, data.table, *gsl*, parallel, plotrix, *reticulate*, stats
> > >
> > > I logged into the container using bash, launched R, and manually
> checked
> > > each of these. Turns out that gsl and reticulate are both
missing from
> > the
> > > containerized version of R. I'll need to update the Dockerfile
and
> commit
> > > that change to METviewer. That'll trigger DockerHub to rebuild
those
> > > images. Once that's all done, you should be able to pull the
updated
> > > version of the image.
> > >
> > > I'll let you know how it all goes.
> > >
> > > Thanks,
> > > John
> > >
> > > On Mon, Nov 30, 2020 at 1:41 PM David Ahijevych via RT <
> > met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
>
> > > >
> > > > Yes, that is correct--on my laptop using a Docker container.
> > > > Sorry about not specifying that.
> > > >
> > > > On Mon, Nov 30, 2020 at 12:42 PM John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Dave,
> > > > >
> > > > > I don't see an XML file with that timestamp on the DTCenter
> METviewer
> > > > > server. And that makes me realize that your question is
about
> running
> > > > > METviewer locally on your laptop using a Docker container.
Is that
> > > > correct?
> > > > >
> > > > > Once I confirm that, I'll know where to go debug.
> > > > >
> > > > > Thanks,
> > > > > John
> > > > >
> > > > > On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> > > > > >
> > > > > > Hi John!
> > > > > > The xml was 20201127_192046
> > > > > >
> > > > > > The history tab is new to me. Thanks for the tip.
> > > > > >
> > > > > > On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via RT
<
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > > Hi Dave,
> > > > > > >
> > > > > > > Can you please send me the METviewer XML file that
resulted in
> > this
> > > > > > error?
> > > > > > > Or just tell me the timestamp that was used so that I
can go
> find
> > > the
> > > > > XML
> > > > > > > on the server?
> > > > > > >
> > > > > > > There's a little detail I should tell you. You can see
the
> > > METviewer
> > > > > > > history on the left hand side of the GUI. By default, it
only
> > shows
> > > > you
> > > > > > > successful XML's (e.g. only those that produced a
plot)... but
> > you
> > > > can
> > > > > > > select "All" to see XML's that resulted in an error. See
the
> > > attached
> > > > > > video
> > > > > > > to illustrate.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > John
> > > > > > >
> > > > > > > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > Fri Nov 27 12:30:19 2020: Request 97638 was acted
upon.
> > > > > > > > Transaction: Ticket created by ahijevyc
> > > > > > > > Queue: met_help
> > > > > > > > Subject: no gsl package in met viewer
> > > > > > > > Owner: Nobody
> > > > > > > > Requestors: ahijevyc at ucar.edu
> > > > > > > > Status: new
> > > > > > > > Ticket <URL:
> > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > I replaced the tutorial database with my own and
reloaded it
> in
> > > MET
> > > > > > > Viewer.
> > > > > > > > I plotted NBR_FSS without confidence intervals, but
when I
> > tried
> > > to
> > > > > add
> > > > > > > > bootstrap confidence intervals I got an error about no
'gsl'
> > > > package.
> > > > > > > >
> > > > > > > > Database query time for mv_met_out 0:00:01.101
> > > > > > > > Save to file time for mv_met_out 0:00:01.613
> > > > > > > >
> > > > > > > > RunningRscript
> > > > > /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > > > > > > ==== Start Rscript error ====
> > > > > > > > Error in library(gsl) : there is no package called
'gsl'
> > > > > > > > Execution halted
> > > > > > > > ==== End Rscript error ====
> > > > > > > > Rscript time 0:00:00.313
> > > > > > > >
> > > > > > > > Is this a problem with the server, or something I can
fix on
> my
> > > > end?
> > > > > > > >
> > > > > > > > Thanks for your help.
> > > > > > > > Dave
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: John Halley Gotway
Time: Wed Dec 02 13:11:04 2020
Great. Thanks for confirming. I'll resolve this ticket.
John
On Wed, Dec 2, 2020 at 12:40 PM David Ahijevych via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
>
> Bingo! Success plotting confidence intervals on aggregated FSS.
>
> On Wed, Dec 2, 2020 at 10:11 AM John Halley Gotway via RT <
> met_help at ucar.edu>
> wrote:
>
> > Dave,
> >
> > OK, here's the issue:
> > https://github.com/dtcenter/METviewer/issues/226
> >
> > And it's been fixed for METviewer version 3.1 and automatically
rebuilt
> by
> > DockerHub.
> >
> > You can try...
> > 1. bring down METviewer: docker-compose down
> > 2. pull the latest version: docker pull dtcenter/metviewer
> > 3. relaunch: docker-compose up -d
> >
> > Please let me know how that goes.
> >
> > Thanks,
> > John
> >
> >
> >
> > On Mon, Nov 30, 2020 at 3:49 PM David Ahijevych via RT <
> met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> > >
> > > Awesome, thanks!
> > >
> > > On Mon, Nov 30, 2020 at 2:43 PM John Halley Gotway via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Dave,
> > > >
> > > > OK, I was able to replicate this error anytime I try to
"aggregate"
> > > results
> > > > using METviewer in the Docker container. I checked all the
existing
> > > > R-scripts and see that they include the following R packages:
> > > >
> > > > boot, data.table, *gsl*, parallel, plotrix, *reticulate*,
stats
> > > >
> > > > I logged into the container using bash, launched R, and
manually
> > checked
> > > > each of these. Turns out that gsl and reticulate are both
missing
> from
> > > the
> > > > containerized version of R. I'll need to update the Dockerfile
and
> > commit
> > > > that change to METviewer. That'll trigger DockerHub to rebuild
those
> > > > images. Once that's all done, you should be able to pull the
updated
> > > > version of the image.
> > > >
> > > > I'll let you know how it all goes.
> > > >
> > > > Thanks,
> > > > John
> > > >
> > > > On Mon, Nov 30, 2020 at 1:41 PM David Ahijevych via RT <
> > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> > > > >
> > > > > Yes, that is correct--on my laptop using a Docker container.
> > > > > Sorry about not specifying that.
> > > > >
> > > > > On Mon, Nov 30, 2020 at 12:42 PM John Halley Gotway via RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > > Dave,
> > > > > >
> > > > > > I don't see an XML file with that timestamp on the
DTCenter
> > METviewer
> > > > > > server. And that makes me realize that your question is
about
> > running
> > > > > > METviewer locally on your laptop using a Docker container.
Is
> that
> > > > > correct?
> > > > > >
> > > > > > Once I confirm that, I'll know where to go debug.
> > > > > >
> > > > > > Thanks,
> > > > > > John
> > > > > >
> > > > > > On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT <
> > > > > met_help at ucar.edu
> > > > > > >
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> >
> > > > > > >
> > > > > > > Hi John!
> > > > > > > The xml was 20201127_192046
> > > > > > >
> > > > > > > The history tab is new to me. Thanks for the tip.
> > > > > > >
> > > > > > > On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway via
RT <
> > > > > > > met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > > Hi Dave,
> > > > > > > >
> > > > > > > > Can you please send me the METviewer XML file that
resulted
> in
> > > this
> > > > > > > error?
> > > > > > > > Or just tell me the timestamp that was used so that I
can go
> > find
> > > > the
> > > > > > XML
> > > > > > > > on the server?
> > > > > > > >
> > > > > > > > There's a little detail I should tell you. You can see
the
> > > > METviewer
> > > > > > > > history on the left hand side of the GUI. By default,
it only
> > > shows
> > > > > you
> > > > > > > > successful XML's (e.g. only those that produced a
plot)...
> but
> > > you
> > > > > can
> > > > > > > > select "All" to see XML's that resulted in an error.
See the
> > > > attached
> > > > > > > video
> > > > > > > > to illustrate.
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > John
> > > > > > > >
> > > > > > > > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via
RT <
> > > > > > > met_help at ucar.edu
> > > > > > > > >
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > Fri Nov 27 12:30:19 2020: Request 97638 was acted
upon.
> > > > > > > > > Transaction: Ticket created by ahijevyc
> > > > > > > > > Queue: met_help
> > > > > > > > > Subject: no gsl package in met viewer
> > > > > > > > > Owner: Nobody
> > > > > > > > > Requestors: ahijevyc at ucar.edu
> > > > > > > > > Status: new
> > > > > > > > > Ticket <URL:
> > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > I replaced the tutorial database with my own and
reloaded
> it
> > in
> > > > MET
> > > > > > > > Viewer.
> > > > > > > > > I plotted NBR_FSS without confidence intervals, but
when I
> > > tried
> > > > to
> > > > > > add
> > > > > > > > > bootstrap confidence intervals I got an error about
no
> 'gsl'
> > > > > package.
> > > > > > > > >
> > > > > > > > > Database query time for mv_met_out 0:00:01.101
> > > > > > > > > Save to file time for mv_met_out 0:00:01.613
> > > > > > > > >
> > > > > > > > > RunningRscript
> > > > > > /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > > > > > > > ==== Start Rscript error ====
> > > > > > > > > Error in library(gsl) : there is no package called
'gsl'
> > > > > > > > > Execution halted
> > > > > > > > > ==== End Rscript error ====
> > > > > > > > > Rscript time 0:00:00.313
> > > > > > > > >
> > > > > > > > > Is this a problem with the server, or something I
can fix
> on
> > my
> > > > > end?
> > > > > > > > >
> > > > > > > > > Thanks for your help.
> > > > > > > > > Dave
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: no gsl package in met viewer
From: David Ahijevych
Time: Fri Jan 15 15:53:09 2021
In the MET Viewer tutorial
<https://dtcenter.github.io/METplus-
Training/modules/METviewer/docker.html#load-xml>
web
page, there is a missing closing double-quotation mark in the command
to
overwrite an existing database. ...mysql -hmysql_mv -uroot -pmvuser
-e”drop
database mv_met_out;
On Wed, Dec 2, 2020 at 1:21 PM John Halley Gotway via RT
<met_help at ucar.edu>
wrote:
> Great. Thanks for confirming. I'll resolve this ticket.
>
> John
>
> On Wed, Dec 2, 2020 at 12:40 PM David Ahijevych via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> >
> > Bingo! Success plotting confidence intervals on aggregated FSS.
> >
> > On Wed, Dec 2, 2020 at 10:11 AM John Halley Gotway via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Dave,
> > >
> > > OK, here's the issue:
> > > https://github.com/dtcenter/METviewer/issues/226
> > >
> > > And it's been fixed for METviewer version 3.1 and automatically
rebuilt
> > by
> > > DockerHub.
> > >
> > > You can try...
> > > 1. bring down METviewer: docker-compose down
> > > 2. pull the latest version: docker pull dtcenter/metviewer
> > > 3. relaunch: docker-compose up -d
> > >
> > > Please let me know how that goes.
> > >
> > > Thanks,
> > > John
> > >
> > >
> > >
> > > On Mon, Nov 30, 2020 at 3:49 PM David Ahijevych via RT <
> > met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
>
> > > >
> > > > Awesome, thanks!
> > > >
> > > > On Mon, Nov 30, 2020 at 2:43 PM John Halley Gotway via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Dave,
> > > > >
> > > > > OK, I was able to replicate this error anytime I try to
"aggregate"
> > > > results
> > > > > using METviewer in the Docker container. I checked all the
existing
> > > > > R-scripts and see that they include the following R
packages:
> > > > >
> > > > > boot, data.table, *gsl*, parallel, plotrix, *reticulate*,
stats
> > > > >
> > > > > I logged into the container using bash, launched R, and
manually
> > > checked
> > > > > each of these. Turns out that gsl and reticulate are both
missing
> > from
> > > > the
> > > > > containerized version of R. I'll need to update the
Dockerfile and
> > > commit
> > > > > that change to METviewer. That'll trigger DockerHub to
rebuild
> those
> > > > > images. Once that's all done, you should be able to pull the
> updated
> > > > > version of the image.
> > > > >
> > > > > I'll let you know how it all goes.
> > > > >
> > > > > Thanks,
> > > > > John
> > > > >
> > > > > On Mon, Nov 30, 2020 at 1:41 PM David Ahijevych via RT <
> > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638 >
> > > > > >
> > > > > > Yes, that is correct--on my laptop using a Docker
container.
> > > > > > Sorry about not specifying that.
> > > > > >
> > > > > > On Mon, Nov 30, 2020 at 12:42 PM John Halley Gotway via RT
<
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > > Dave,
> > > > > > >
> > > > > > > I don't see an XML file with that timestamp on the
DTCenter
> > > METviewer
> > > > > > > server. And that makes me realize that your question is
about
> > > running
> > > > > > > METviewer locally on your laptop using a Docker
container. Is
> > that
> > > > > > correct?
> > > > > > >
> > > > > > > Once I confirm that, I'll know where to go debug.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > John
> > > > > > >
> > > > > > > On Mon, Nov 30, 2020 at 11:45 AM David Ahijevych via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > >
> > > > > > > >
> > > > > > > > Hi John!
> > > > > > > > The xml was 20201127_192046
> > > > > > > >
> > > > > > > > The history tab is new to me. Thanks for the tip.
> > > > > > > >
> > > > > > > > On Mon, Nov 30, 2020 at 11:00 AM John Halley Gotway
via RT <
> > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > > Hi Dave,
> > > > > > > > >
> > > > > > > > > Can you please send me the METviewer XML file that
resulted
> > in
> > > > this
> > > > > > > > error?
> > > > > > > > > Or just tell me the timestamp that was used so that
I can
> go
> > > find
> > > > > the
> > > > > > > XML
> > > > > > > > > on the server?
> > > > > > > > >
> > > > > > > > > There's a little detail I should tell you. You can
see the
> > > > > METviewer
> > > > > > > > > history on the left hand side of the GUI. By
default, it
> only
> > > > shows
> > > > > > you
> > > > > > > > > successful XML's (e.g. only those that produced a
plot)...
> > but
> > > > you
> > > > > > can
> > > > > > > > > select "All" to see XML's that resulted in an error.
See
> the
> > > > > attached
> > > > > > > > video
> > > > > > > > > to illustrate.
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > On Fri, Nov 27, 2020 at 12:30 PM David Ahijevych via
RT <
> > > > > > > > met_help at ucar.edu
> > > > > > > > > >
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Fri Nov 27 12:30:19 2020: Request 97638 was acted
upon.
> > > > > > > > > > Transaction: Ticket created by ahijevyc
> > > > > > > > > > Queue: met_help
> > > > > > > > > > Subject: no gsl package in met viewer
> > > > > > > > > > Owner: Nobody
> > > > > > > > > > Requestors: ahijevyc at ucar.edu
> > > > > > > > > > Status: new
> > > > > > > > > > Ticket <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97638
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > I replaced the tutorial database with my own and
reloaded
> > it
> > > in
> > > > > MET
> > > > > > > > > Viewer.
> > > > > > > > > > I plotted NBR_FSS without confidence intervals,
but when
> I
> > > > tried
> > > > > to
> > > > > > > add
> > > > > > > > > > bootstrap confidence intervals I got an error
about no
> > 'gsl'
> > > > > > package.
> > > > > > > > > >
> > > > > > > > > > Database query time for mv_met_out 0:00:01.101
> > > > > > > > > > Save to file time for mv_met_out 0:00:01.613
> > > > > > > > > >
> > > > > > > > > > RunningRscript
> > > > > > > /opt/tomcat/webapps/metviewer//R_work/include/agg_stat.R
> > > > > > > > > > ==== Start Rscript error ====
> > > > > > > > > > Error in library(gsl) : there is no package called
'gsl'
> > > > > > > > > > Execution halted
> > > > > > > > > > ==== End Rscript error ====
> > > > > > > > > > Rscript time 0:00:00.313
> > > > > > > > > >
> > > > > > > > > > Is this a problem with the server, or something I
can fix
> > on
> > > my
> > > > > > end?
> > > > > > > > > >
> > > > > > > > > > Thanks for your help.
> > > > > > > > > > Dave
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
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