[Met_help] [rt.rap.ucar.edu #82955] History for Met 6.0 Configuration on Theia
John Halley Gotway via RT
met_help at ucar.edu
Tue Jul 9 12:04:08 MDT 2019
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hello,
I am trying to configure Met-6.0 on Theia and is not working.
Here is what I am doing:
Load and setenv on my .cshrc but I don't know what is the location of
the BUFRLIB
and GSL to set the environment on Theia
module load intel
module load mvapich2
module load netcdf
module load wgrib2
module load ncview
module load ncl
module load imagemagick
module load idl
module load grads
module load impi
# module load hsms
module load rocoto
module load ncl
module load R
setenv MET_NETCDFINC /apps/netcdf/4.3.0/gcc/4.4.7
setenv MET_NETCDFLIB /apps/netcdf/4.3.0/gcc/4.4.7
setenv MET_HDF5 /apps/hdf5/1.8.14/gcc/4.4.7
# setenv MET_BUFR
# setenv MET_GSL
setenv MET_GRIB2CINC /apps/grib2/1.4.0-intel
setenv MET_GRIB2CLIB /apps/grib2/1.4.0-intel
setenv MET_CAIROINC /apps/cairo/1.14.2
setenv MET_CAIROLIB /apps/cairo/1.14.2
Then I type *./configure --prefix=`pwd` and *make install > &
make_install.log
I am getting the following error:
make[3]: Entering directory
`/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/src/libcode/vx_nc_util'
g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/basic/vx_cal
-I../../../src/basic/vx_config -I../../../src/basic/vx_log
-I../../../src/basic/vx_math -I../../../src/basic/vx_util
-I../../../src/libcode/vx_afm -I../../../src/libcode/vx_analysis_util
-I../../../src/libcode/vx_color -I../../../src/libcode/vx_data2d
-I../../../src/libcode/vx_data2d_factory
-I../../../src/libcode/vx_data2d_grib
-I../../../src/libcode/vx_data2d_grib2
-I../../../src/libcode/vx_data2d_nccf
-I../../../src/libcode/vx_data2d_nc_met
-I../../../src/libcode/vx_data2d_nc_pinterp
-I../../../src/libcode/vx_geodesy -I../../../src/libcode/vx_gnomon
-I../../../src/libcode/vx_grid -I../../../src/libcode/vx_gsl_prob
-I../../../src/libcode/vx_nav -I../../../src/libcode/vx_nc_util
-I../../../src/libcode/vx_pb_util -I../../../src/libcode/vx_plot_util
-I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
-I../../../src/libcode/vx_render -I../../../src/libcode/vx_regrid
-I../../../src/libcode/vx_shapedata -I../../../src/libcode/vx_solar
-I../../../src/libcode/vx_statistics -I../../../src/libcode/vx_stat_out
-I../../../src/libcode/vx_time_series -I../../../src/libcode/vx_tc_util
-I/apps/netcdf/4.3.0/gcc/4.4.7 -I/apps/hdf5/1.8.14/gcc/4.4.7/include
-I/apps/grib2/1.4.0-intel -I/apps/cairo/1.14.2 -DBLOCK4
-DMET_BASE="\"/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/share/met\"" -g
-MT libvx_nc_util_a-nc_var_info.o -MD -MP -MF
.deps/libvx_nc_util_a-nc_var_info.Tpo -c -o libvx_nc_util_a-nc_var_info.o
`test -f 'nc_var_info.cc' || echo './'`nc_var_info.cc
In file included from nc_var_info.cc:24:0:
nc_utils.h:22:18: fatal error: netcdf: No such file or directory
#include <netcdf>
^
compilation terminated.
make[3]: *** [libvx_nc_util_a-nc_var_info.o] Error 1
make[3]: Leaving directory
`/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/src/libcode/vx_nc_util'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory
`/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/src/libcode'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/src'
make: *** [install-recursive] Error 1
I saw that there is some information online about Met 6.0 and this problem
but I still don't know how to fix it on Theia.
Also, I don't have a bin directory. Is this directory supposed to exist
already or it is created after successfully configure and install?
Thanks,
Keren
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Met 6.0 Configuration on Theia
From: John Halley Gotway
Time: Wed Nov 08 18:04:31 2017
Keren,
Met-6.0 is already installed in a common area on theia. There is no
“need”
for you to compile your own version. Instead, you could just load the
module file for the common installation, as described on this page:
https://dtcenter.org/met/users/downloads/existing_met_builds.php
John
On Wed, Nov 8, 2017 at 5:14 PM Keren Rosado - NOAA Affiliate via RT <
met_help at ucar.edu> wrote:
>
> Wed Nov 08 17:14:32 2017: Request 82955 was acted upon.
> Transaction: Ticket created by keren.rosado at noaa.gov
> Queue: met_help
> Subject: Met 6.0 Configuration on Theia
> Owner: Nobody
> Requestors: keren.rosado at noaa.gov
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82955 >
>
>
> Hello,
>
> I am trying to configure Met-6.0 on Theia and is not working.
>
> Here is what I am doing:
>
> Load and setenv on my .cshrc but I don't know what is the location
of
> the BUFRLIB
> and GSL to set the environment on Theia
>
>
> module load intel
>
> module load mvapich2
>
> module load netcdf
>
> module load wgrib2
>
> module load ncview
>
> module load ncl
>
> module load imagemagick
>
> module load idl
>
> module load grads
>
> module load impi
>
> # module load hsms
>
> module load rocoto
>
> module load ncl
>
> module load R
>
>
> setenv MET_NETCDFINC /apps/netcdf/4.3.0/gcc/4.4.7
>
> setenv MET_NETCDFLIB /apps/netcdf/4.3.0/gcc/4.4.7
>
> setenv MET_HDF5 /apps/hdf5/1.8.14/gcc/4.4.7
>
> # setenv MET_BUFR
>
> # setenv MET_GSL
>
> setenv MET_GRIB2CINC /apps/grib2/1.4.0-intel
>
> setenv MET_GRIB2CLIB /apps/grib2/1.4.0-intel
>
> setenv MET_CAIROINC /apps/cairo/1.14.2
>
> setenv MET_CAIROLIB /apps/cairo/1.14.2
>
>
> Then I type *./configure --prefix=`pwd` and *make install > &
> make_install.log
>
>
> I am getting the following error:
>
> make[3]: Entering directory
> `/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/src/libcode/vx_nc_util'
>
> g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/basic/vx_cal
> -I../../../src/basic/vx_config -I../../../src/basic/vx_log
> -I../../../src/basic/vx_math -I../../../src/basic/vx_util
> -I../../../src/libcode/vx_afm
-I../../../src/libcode/vx_analysis_util
> -I../../../src/libcode/vx_color -I../../../src/libcode/vx_data2d
> -I../../../src/libcode/vx_data2d_factory
> -I../../../src/libcode/vx_data2d_grib
> -I../../../src/libcode/vx_data2d_grib2
> -I../../../src/libcode/vx_data2d_nccf
> -I../../../src/libcode/vx_data2d_nc_met
> -I../../../src/libcode/vx_data2d_nc_pinterp
> -I../../../src/libcode/vx_geodesy -I../../../src/libcode/vx_gnomon
> -I../../../src/libcode/vx_grid -I../../../src/libcode/vx_gsl_prob
> -I../../../src/libcode/vx_nav -I../../../src/libcode/vx_nc_util
> -I../../../src/libcode/vx_pb_util
-I../../../src/libcode/vx_plot_util
> -I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
> -I../../../src/libcode/vx_render -I../../../src/libcode/vx_regrid
> -I../../../src/libcode/vx_shapedata -I../../../src/libcode/vx_solar
> -I../../../src/libcode/vx_statistics
-I../../../src/libcode/vx_stat_out
> -I../../../src/libcode/vx_time_series
-I../../../src/libcode/vx_tc_util
> -I/apps/netcdf/4.3.0/gcc/4.4.7 -I/apps/hdf5/1.8.14/gcc/4.4.7/include
> -I/apps/grib2/1.4.0-intel -I/apps/cairo/1.14.2 -DBLOCK4
> -DMET_BASE="\"/scratch4/BMC/fim/Keren.Rosado/MET/met-
6.0/share/met\"" -g
> -MT libvx_nc_util_a-nc_var_info.o -MD -MP -MF
> .deps/libvx_nc_util_a-nc_var_info.Tpo -c -o libvx_nc_util_a-
nc_var_info.o
> `test -f 'nc_var_info.cc' || echo './'`nc_var_info.cc
>
> In file included from nc_var_info.cc:24:0:
>
> nc_utils.h:22:18: fatal error: netcdf: No such file or directory
>
> #include <netcdf>
>
> ^
>
> compilation terminated.
>
> make[3]: *** [libvx_nc_util_a-nc_var_info.o] Error 1
>
> make[3]: Leaving directory
> `/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/src/libcode/vx_nc_util'
>
> make[2]: *** [install-recursive] Error 1
>
> make[2]: Leaving directory
> `/scratch4/BMC/fim/Keren.Rosado/MET/met-6.0/src/libcode'
>
> make[1]: *** [install-recursive] Error 1
>
> make[1]: Leaving directory `/scratch4/BMC/fim/Keren.Rosado/MET/met-
6.0/src'
>
> make: *** [install-recursive] Error 1
>
> I saw that there is some information online about Met 6.0 and this
problem
> but I still don't know how to fix it on Theia.
>
> Also, I don't have a bin directory. Is this directory supposed to
exist
> already or it is created after successfully configure and install?
>
> Thanks,
>
> Keren
>
>
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