[Met_help] [rt.rap.ucar.edu #88520] History for Preparation for NetCDF file for MET

John Halley Gotway via RT met_help at ucar.edu
Wed Jan 16 11:59:59 MST 2019 

----------------------------------------------------------------
  Initial Request
----------------------------------------------------------------

To whom it may concern:

I am Yunsung Hwang and I am fairly new to MET. I am trying to use
MODE-time-domain to track MCSs using precipitation and I successfully
installed met 8.0 with libraries such as NetCDF, hdf5, GSL, BUFRLIB ...

I also followed tutorials to obtain some of the results form MODE, and MTD.
I would like to shift to the case what I have. I am not sure where to
start. Right now, I have 3D wrf out file that is in NetCDF format, however
I am not sure how to put those into MET. I also searched to figure out I
can convert files using WRF_interp, however I encountered library problem
related with NetCDF.

in README, it is said

ifort -o wrf_interp.exe -traceback -fpe0 -check all -ftrapuv -unroll0 -u
-fp-stack-check -fpe-all=0 -no-ftz -O0 wrf_interp.F90

to obtain WRF_interp.exe, however I encountered

/tmp/ifortYYFRCz.o: In function `MAIN__':

/home/hisnamey/met/WRF_interp/wrf_interp.F90:198: undefined reference to
`nf_open_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:201: undefined reference to
`nf_create_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:237: undefined reference to
`nf_inq_varid_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:238: undefined reference to
`nf_get_var_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:281: undefined reference to
`nf_inq_varid_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:282: undefined reference to
`nf_get_var_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:336: undefined reference to
`nf_inq_var_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:362: undefined reference to
`nf_redef_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:395: undefined reference to
`nf_def_var_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:403: undefined reference to
`nf_inq_attname_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:407: undefined reference to
`nf_put_att_text_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:411: undefined reference to
`nf_put_att_text_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:413: undefined reference to
`nf_copy_att_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:416: undefined reference to
`nf_put_att_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:417: undefined reference to
`nf_enddef_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:440: undefined reference to
`nf_get_var_text_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:441: undefined reference to
`nf_put_vara_text_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:448: undefined reference to
`nf_get_var_int_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:449: undefined reference to
`nf_put_vara_int_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:458: undefined reference to
`nf_get_var_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:480: undefined reference to
`nf_put_vara_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:499: undefined reference to
`nf_put_vara_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:520: undefined reference to
`nf_put_vara_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:540: undefined reference to
`nf_put_vara_real_'

/home/hisnamey/met/WRF_interp/wrf_interp.F90:563: undefined reference to
`nf_put_vara_real_'

/tmp/ifortYYFRCz.o:/home/hisnamey/met/WRF_interp/wrf_interp.F90:582: more
undefined references to `nf_put_vara_real_' follow

which was somewhat related to NetCDF library which I properly set to the
location in LD_LIBRARY_PATH in .basrc.

Is there someone who can help me out to generate NetCDF file that can be
digested in MET?

Many thanks

Best regards,
Yunsung Hwang


----------------------------------------------------------------
  Complete Ticket History
----------------------------------------------------------------

Subject: Preparation for NetCDF file for MET
From: John Halley Gotway
Time: Tue Jan 15 14:50:17 2019

Yunsung,

It sounds like you're having trouble compiling the wrf_interp utility.
While wrf_interp is an option, we typically recommend that users
post-process their WRF output using the Unified Post-Processor (UPP).
UPP
is supported by the DTC (as is MET).  Here's the corresponding
website:
   https://dtcenter.org/upp/users/

The output of UPP is GRIB1 or GRIB2, both of which MET should handle
well.

If you choose to go with UPP, you can email questions to upp-
help at ucar.edu.
If you choose to stick with wrf_interp, please see this website for
how to
get help with WRF:
    http://www2.mmm.ucar.edu/wrf/users/supports/wrfhelp.html

Thanks,
John Halley Gotway



On Tue, Jan 15, 2019 at 1:43 PM Yunsung Hwang via RT
<met_help at ucar.edu>
wrote:

>
> Tue Jan 15 13:42:58 2019: Request 88520 was acted upon.
> Transaction: Ticket created by hisnameys at gmail.com
>        Queue: met_help
>      Subject: Preparation for NetCDF file for MET
>        Owner: Nobody
>   Requestors: hisnameys at gmail.com
>       Status: new
>  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88520 >
>
>
> To whom it may concern:
>
> I am Yunsung Hwang and I am fairly new to MET. I am trying to use
> MODE-time-domain to track MCSs using precipitation and I
successfully
> installed met 8.0 with libraries such as NetCDF, hdf5, GSL, BUFRLIB
...
>
> I also followed tutorials to obtain some of the results form MODE,
and MTD.
> I would like to shift to the case what I have. I am not sure where
to
> start. Right now, I have 3D wrf out file that is in NetCDF format,
however
> I am not sure how to put those into MET. I also searched to figure
out I
> can convert files using WRF_interp, however I encountered library
problem
> related with NetCDF.
>
> in README, it is said
>
> ifort -o wrf_interp.exe -traceback -fpe0 -check all -ftrapuv
-unroll0 -u
> -fp-stack-check -fpe-all=0 -no-ftz -O0 wrf_interp.F90
>
> to obtain WRF_interp.exe, however I encountered
>
> /tmp/ifortYYFRCz.o: In function `MAIN__':
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:198: undefined
reference to
> `nf_open_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:201: undefined
reference to
> `nf_create_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:237: undefined
reference to
> `nf_inq_varid_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:238: undefined
reference to
> `nf_get_var_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:281: undefined
reference to
> `nf_inq_varid_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:282: undefined
reference to
> `nf_get_var_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:336: undefined
reference to
> `nf_inq_var_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:362: undefined
reference to
> `nf_redef_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:395: undefined
reference to
> `nf_def_var_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:403: undefined
reference to
> `nf_inq_attname_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:407: undefined
reference to
> `nf_put_att_text_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:411: undefined
reference to
> `nf_put_att_text_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:413: undefined
reference to
> `nf_copy_att_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:416: undefined
reference to
> `nf_put_att_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:417: undefined
reference to
> `nf_enddef_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:440: undefined
reference to
> `nf_get_var_text_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:441: undefined
reference to
> `nf_put_vara_text_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:448: undefined
reference to
> `nf_get_var_int_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:449: undefined
reference to
> `nf_put_vara_int_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:458: undefined
reference to
> `nf_get_var_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:480: undefined
reference to
> `nf_put_vara_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:499: undefined
reference to
> `nf_put_vara_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:520: undefined
reference to
> `nf_put_vara_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:540: undefined
reference to
> `nf_put_vara_real_'
>
> /home/hisnamey/met/WRF_interp/wrf_interp.F90:563: undefined
reference to
> `nf_put_vara_real_'
>
> /tmp/ifortYYFRCz.o:/home/hisnamey/met/WRF_interp/wrf_interp.F90:582:
more
> undefined references to `nf_put_vara_real_' follow
>
> which was somewhat related to NetCDF library which I properly set to
the
> location in LD_LIBRARY_PATH in .basrc.
>
> Is there someone who can help me out to generate NetCDF file that
can be
> digested in MET?
>
> Many thanks
>
> Best regards,
> Yunsung Hwang
>
>

------------------------------------------------
Subject: Preparation for NetCDF file for MET
From: Yunsung Hwang
Time: Wed Jan 16 11:37:23 2019

Thank you very much for your kind response.

I would rather use UPP then WRF_interp as you suggeted grib files to
be
input.

I will ask questions related to UPP to upp help email.

Thanks for your help.

Best regards,
Yunsung Hwang

On Tue, Jan 15, 2019 at 3:50 PM John Halley Gotway via RT
<met_help at ucar.edu>
wrote:

> Yunsung,
>
> It sounds like you're having trouble compiling the wrf_interp
utility.
> While wrf_interp is an option, we typically recommend that users
> post-process their WRF output using the Unified Post-Processor
(UPP).  UPP
> is supported by the DTC (as is MET).  Here's the corresponding
website:
>    https://dtcenter.org/upp/users/
>
> The output of UPP is GRIB1 or GRIB2, both of which MET should handle
well.
>
> If you choose to go with UPP, you can email questions to upp-
help at ucar.edu
> .
> If you choose to stick with wrf_interp, please see this website for
how to
> get help with WRF:
>     http://www2.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>
> Thanks,
> John Halley Gotway
>
>
>
> On Tue, Jan 15, 2019 at 1:43 PM Yunsung Hwang via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > Tue Jan 15 13:42:58 2019: Request 88520 was acted upon.
> > Transaction: Ticket created by hisnameys at gmail.com
> >        Queue: met_help
> >      Subject: Preparation for NetCDF file for MET
> >        Owner: Nobody
> >   Requestors: hisnameys at gmail.com
> >       Status: new
> >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88520 >
> >
> >
> > To whom it may concern:
> >
> > I am Yunsung Hwang and I am fairly new to MET. I am trying to use
> > MODE-time-domain to track MCSs using precipitation and I
successfully
> > installed met 8.0 with libraries such as NetCDF, hdf5, GSL,
BUFRLIB ...
> >
> > I also followed tutorials to obtain some of the results form MODE,
and
> MTD.
> > I would like to shift to the case what I have. I am not sure where
to
> > start. Right now, I have 3D wrf out file that is in NetCDF format,
> however
> > I am not sure how to put those into MET. I also searched to figure
out I
> > can convert files using WRF_interp, however I encountered library
problem
> > related with NetCDF.
> >
> > in README, it is said
> >
> > ifort -o wrf_interp.exe -traceback -fpe0 -check all -ftrapuv
-unroll0 -u
> > -fp-stack-check -fpe-all=0 -no-ftz -O0 wrf_interp.F90
> >
> > to obtain WRF_interp.exe, however I encountered
> >
> > /tmp/ifortYYFRCz.o: In function `MAIN__':
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:198: undefined
reference to
> > `nf_open_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:201: undefined
reference to
> > `nf_create_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:237: undefined
reference to
> > `nf_inq_varid_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:238: undefined
reference to
> > `nf_get_var_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:281: undefined
reference to
> > `nf_inq_varid_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:282: undefined
reference to
> > `nf_get_var_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:336: undefined
reference to
> > `nf_inq_var_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:362: undefined
reference to
> > `nf_redef_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:395: undefined
reference to
> > `nf_def_var_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:403: undefined
reference to
> > `nf_inq_attname_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:407: undefined
reference to
> > `nf_put_att_text_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:411: undefined
reference to
> > `nf_put_att_text_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:413: undefined
reference to
> > `nf_copy_att_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:416: undefined
reference to
> > `nf_put_att_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:417: undefined
reference to
> > `nf_enddef_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:440: undefined
reference to
> > `nf_get_var_text_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:441: undefined
reference to
> > `nf_put_vara_text_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:448: undefined
reference to
> > `nf_get_var_int_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:449: undefined
reference to
> > `nf_put_vara_int_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:458: undefined
reference to
> > `nf_get_var_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:480: undefined
reference to
> > `nf_put_vara_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:499: undefined
reference to
> > `nf_put_vara_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:520: undefined
reference to
> > `nf_put_vara_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:540: undefined
reference to
> > `nf_put_vara_real_'
> >
> > /home/hisnamey/met/WRF_interp/wrf_interp.F90:563: undefined
reference to
> > `nf_put_vara_real_'
> >
> >
/tmp/ifortYYFRCz.o:/home/hisnamey/met/WRF_interp/wrf_interp.F90:582:
more
> > undefined references to `nf_put_vara_real_' follow
> >
> > which was somewhat related to NetCDF library which I properly set
to the
> > location in LD_LIBRARY_PATH in .basrc.
> >
> > Is there someone who can help me out to generate NetCDF file that
can be
> > digested in MET?
> >
> > Many thanks
> >
> > Best regards,
> > Yunsung Hwang
> >
> >
>
>

--
Best regards,
Yunsung Hwang

------------------------------------------------

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