[Met_help] [rt.rap.ucar.edu #83037] History for MET TC Rscripts in Theia
John Halley Gotway via RT
met_help at ucar.edu
Thu Nov 16 10:47:27 MST 2017
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Initial Request
----------------------------------------------------------------
Hello,
I will like to know how can I use Rscripts on Theia?
After module use /contrib/modulefiles and module load met, plot_tcmpr.R
does not work.
I also try the instructions on the online tutorial
*setenv MET_BUILD_BASE `pwd`*
*setenv PATH `pwd`/bin:$PATH*
I am getting the following error:
plot_tcmpr.R: Command not found
Thanks,
Keren
----
Keren Rosado, Ph.D.
Howard University/NOAA-CAS
Postdoctoral Fellow NOAA/ESRL
Office: (303) 497-5907
Cel: (407) 621-1676
Email: Keren.Rosado at noaa.gov <Bin.Liu at noaa.gov>
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Complete Ticket History
----------------------------------------------------------------
Subject: MET TC Rscripts in Theia
From: John Halley Gotway
Time: Thu Nov 16 09:36:21 2017
Hi Keren,
I see you have a question about the plot_tcmpr.R script that included
in
the MET release.
First, let me point you to examples of running this in the online
tutorial:
https://dtcenter.org/met/users/support/online_tutorial/METv6
.0/tutorial.php?name=tc_stat&category=output
Here's how you run a script written in R:
Rscript plot_tcmpr.R
You pass your R script (plot_tcmpr.R) to the utility named Rscript.
So you
need to know the answer to 2 questions:
(1) Where can you find the plot_tcmpr.R script on theia?
/scratch4/BMC/dtc/MET/met-6.0/scripts/Rscripts/plot_tcmpr.R
(2) How can you access the Rscript command on theia?
Run "module load R".
So you'd run it like this:
module load R
setenv MET_BUILD_BASE /scratch4/BMC/dtc/MET/met-6.0
setenv RSCRIPTS_BASE /scratch4/BMC/dtc/MET/met-
6.0/scripts/Rscripts
Rscript /scratch4/BMC/dtc/MET/met-
6.0/scripts/Rscripts/plot_tcmpr.R
That should print out the usage statement.
Thanks,
John
On Wed, Nov 15, 2017 at 4:31 PM, Keren Rosado - NOAA Affiliate via RT
<
met_help at ucar.edu> wrote:
>
> Wed Nov 15 16:31:07 2017: Request 83037 was acted upon.
> Transaction: Ticket created by keren.rosado at noaa.gov
> Queue: met_help
> Subject: MET TC Rscripts in Theia
> Owner: Nobody
> Requestors: keren.rosado at noaa.gov
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=83037 >
>
>
> Hello,
>
> I will like to know how can I use Rscripts on Theia?
> After module use /contrib/modulefiles and module load met,
plot_tcmpr.R
> does not work.
>
> I also try the instructions on the online tutorial
> *setenv MET_BUILD_BASE `pwd`*
> *setenv PATH `pwd`/bin:$PATH*
>
> I am getting the following error:
>
> plot_tcmpr.R: Command not found
>
>
> Thanks,
>
>
> Keren
> ----
> Keren Rosado, Ph.D.
> Howard University/NOAA-CAS
> Postdoctoral Fellow NOAA/ESRL
> Office: (303) 497-5907
> Cel: (407) 621-1676
> Email: Keren.Rosado at noaa.gov <Bin.Liu at noaa.gov>
>
>
------------------------------------------------
Subject: MET TC Rscripts in Theia
From: Keren Rosado - NOAA Affiliate
Time: Thu Nov 16 10:43:13 2017
Hi John,
Is working!
Thanks,
Keren
----
Keren Rosado, Ph.D.
Howard University/NOAA-CAS
Postdoctoral Fellow NOAA/ESRL
Office: (303) 497-5907
Cel: (407) 621-1676
Email: keren.rosado at noaa.gov
On Thu, Nov 16, 2017 at 9:36 AM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Hi Keren,
>
> I see you have a question about the plot_tcmpr.R script that
included in
> the MET release.
>
> First, let me point you to examples of running this in the online
tutorial:
> https://dtcenter.org/met/users/support/online_tutorial/METv6
> .0/tutorial.php?name=tc_stat&category=output
>
> Here's how you run a script written in R:
> Rscript plot_tcmpr.R
>
> You pass your R script (plot_tcmpr.R) to the utility named Rscript.
So you
> need to know the answer to 2 questions:
>
> (1) Where can you find the plot_tcmpr.R script on theia?
> /scratch4/BMC/dtc/MET/met-6.0/scripts/Rscripts/plot_tcmpr.R
>
> (2) How can you access the Rscript command on theia?
> Run "module load R".
>
> So you'd run it like this:
>
> module load R
> setenv MET_BUILD_BASE /scratch4/BMC/dtc/MET/met-6.0
> setenv RSCRIPTS_BASE /scratch4/BMC/dtc/MET/met-
6.0/scripts/Rscripts
> Rscript /scratch4/BMC/dtc/MET/met-
6.0/scripts/Rscripts/plot_tcmpr.R
>
> That should print out the usage statement.
>
> Thanks,
> John
>
> On Wed, Nov 15, 2017 at 4:31 PM, Keren Rosado - NOAA Affiliate via
RT <
> met_help at ucar.edu> wrote:
>
> >
> > Wed Nov 15 16:31:07 2017: Request 83037 was acted upon.
> > Transaction: Ticket created by keren.rosado at noaa.gov
> > Queue: met_help
> > Subject: MET TC Rscripts in Theia
> > Owner: Nobody
> > Requestors: keren.rosado at noaa.gov
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=83037 >
> >
> >
> > Hello,
> >
> > I will like to know how can I use Rscripts on Theia?
> > After module use /contrib/modulefiles and module load met,
plot_tcmpr.R
> > does not work.
> >
> > I also try the instructions on the online tutorial
> > *setenv MET_BUILD_BASE `pwd`*
> > *setenv PATH `pwd`/bin:$PATH*
> >
> > I am getting the following error:
> >
> > plot_tcmpr.R: Command not found
> >
> >
> > Thanks,
> >
> >
> > Keren
> > ----
> > Keren Rosado, Ph.D.
> > Howard University/NOAA-CAS
> > Postdoctoral Fellow NOAA/ESRL
> > Office: (303) 497-5907
> > Cel: (407) 621-1676
> > Email: Keren.Rosado at noaa.gov <Bin.Liu at noaa.gov>
> >
> >
>
>
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