[Met_help] [rt.rap.ucar.edu #80142] History for missing libraries on the NOAA machine Theia
John Halley Gotway via RT
met_help at ucar.edu
Fri Apr 14 09:36:12 MDT 2017
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Good Morning,
I am just trying to get started running MET on Theia. I have done
the following:
setenv LD_LIBRARY_PATH
/scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_LIBRARY_PATH
I am still missing a library however
grid_stat: error while loading shared libraries: libimf.so
This library does not seem to be in the
/scratch4/BMC/dtc/MET/external_libs_intel/lib
directory. Do you know what module needs to loaded on Theia in order to
get this
library,
Many Thanks,
Sherrie Fredrick
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: Sherrie Fredrick - NOAA Affiliate
Time: Thu Apr 13 11:12:22 2017
Good Morning again.
I just figured out how to get the library. So please disregard my
earlier email.
Many thanks,
Sherrie
On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via RT <
met_help at ucar.edu> wrote:
> Greetings,
>
> This message has been automatically generated in response to the
> creation of a trouble ticket regarding:
> "missing libraries on the NOAA machine Theia",
> a summary of which appears below.
>
> There is no need to reply to this message right now. Your ticket
has been
> assigned an ID of [rt.rap.ucar.edu #80142].
>
> Please include the string:
>
> [rt.rap.ucar.edu #80142]
>
> in the subject line of all future correspondence about this issue.
To do
> so,
> you may reply to this message.
>
> Thank you,
> met_help at ucar.edu
>
>
-------------------------------------------------------------------------
> Good Morning,
>
> I am just trying to get started running MET on Theia. I
have done
> the following:
> setenv LD_LIBRARY_PATH
> /scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_LIBRARY_PATH
>
> I am still missing a library however
> grid_stat: error while loading shared libraries:
libimf.so
>
> This library does not seem to be in the
> /scratch4/BMC/dtc/MET/external_libs_intel/lib
> directory. Do you know what module needs to loaded on Theia in
order to
> get this
> library,
>
> Many Thanks,
> Sherrie Fredrick
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: John Halley Gotway
Time: Thu Apr 13 11:18:56 2017
Sherrie,
Great, glad you were able to figure it out. Ideally, we'd create a
module
file for MET on theia so that all you'd need to do is run: module load
met/6.0
But unfortunately that doesn't exist yet.
Thanks,
John Halley Gotway
On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick - NOAA Affiliate
via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
>
> Good Morning again.
>
> I just figured out how to get the library. So please disregard
my
> earlier email.
>
> Many thanks,
> Sherrie
>
> On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via RT <
> met_help at ucar.edu> wrote:
>
> > Greetings,
> >
> > This message has been automatically generated in response to the
> > creation of a trouble ticket regarding:
> > "missing libraries on the NOAA machine Theia",
> > a summary of which appears below.
> >
> > There is no need to reply to this message right now. Your ticket
has
> been
> > assigned an ID of [rt.rap.ucar.edu #80142].
> >
> > Please include the string:
> >
> > [rt.rap.ucar.edu #80142]
> >
> > in the subject line of all future correspondence about this issue.
To do
> > so,
> > you may reply to this message.
> >
> > Thank you,
> > met_help at ucar.edu
> >
> > ------------------------------------------------------------
> -------------
> > Good Morning,
> >
> > I am just trying to get started running MET on Theia. I
have
> done
> > the following:
> > setenv LD_LIBRARY_PATH
> > /scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_LIBRARY_PATH
> >
> > I am still missing a library however
> > grid_stat: error while loading shared libraries:
libimf.so
> >
> > This library does not seem to be in the
> > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > directory. Do you know what module needs to loaded on Theia in
order to
> > get this
> > library,
> >
> > Many Thanks,
> > Sherrie Fredrick
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: Sherrie Fredrick - NOAA Affiliate
Time: Thu Apr 13 11:52:51 2017
Hi John,
I do have a question. The field name in my output model file is
not
the same as the filed name in
my analysis file. I get an error when I try to run grid_stat. My
configuration file is as follows.
////////////////////////////////////////////////////////////////////////////////
// Forecast and observation fields to be verified
//
fcst = {
field = [
{
name = "U_GRD_3_ISBL";
level = "(*,*);
}
];
}
///////////////////////////////////////////////////////////////
obs = {
field = [
{
name = "U_GDS0_ISBL";
level = "(*,*);
}
];
}
Do the names in the observation or analysis file have to be the same
as in
the model file? The error
is the name = "U_GDS0_ISBL";
Thanks,
Sherrie
On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Sherrie,
>
> Great, glad you were able to figure it out. Ideally, we'd create a
module
> file for MET on theia so that all you'd need to do is run: module
load
> met/6.0
>
> But unfortunately that doesn't exist yet.
>
> Thanks,
> John Halley Gotway
>
> On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick - NOAA Affiliate
via RT
> <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> >
> > Good Morning again.
> >
> > I just figured out how to get the library. So please
disregard my
> > earlier email.
> >
> > Many thanks,
> > Sherrie
> >
> > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Greetings,
> > >
> > > This message has been automatically generated in response to the
> > > creation of a trouble ticket regarding:
> > > "missing libraries on the NOAA machine Theia",
> > > a summary of which appears below.
> > >
> > > There is no need to reply to this message right now. Your
ticket has
> > been
> > > assigned an ID of [rt.rap.ucar.edu #80142].
> > >
> > > Please include the string:
> > >
> > > [rt.rap.ucar.edu #80142]
> > >
> > > in the subject line of all future correspondence about this
issue. To
> do
> > > so,
> > > you may reply to this message.
> > >
> > > Thank you,
> > > met_help at ucar.edu
> > >
> > > ------------------------------------------------------------
> > -------------
> > > Good Morning,
> > >
> > > I am just trying to get started running MET on Theia. I
have
> > done
> > > the following:
> > > setenv LD_LIBRARY_PATH
> > > /scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_LIBRARY_PATH
> > >
> > > I am still missing a library however
> > > grid_stat: error while loading shared libraries:
libimf.so
> > >
> > > This library does not seem to be in the
> > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > > directory. Do you know what module needs to loaded on Theia in
order
> to
> > > get this
> > > library,
> > >
> > > Many Thanks,
> > > Sherrie Fredrick
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: John Halley Gotway
Time: Thu Apr 13 12:59:11 2017
Sherrie,
No they do not. It's fine to compare one field against another field.
If
you'd like, you could post some sample files (forecast, observation,
and
Grid-Stat config file) to our anonymous ftp site. Or just point me to
them
on theia. I could run your command, get the same error, and suggest
how
you might fix it.
If you want to put them on our ftp site, please follow these
instructions:
http://www.dtcenter.org/met/users/support/met_help.php#ftp
Thanks,
John
On Thu, Apr 13, 2017 at 11:52 AM, Sherrie Fredrick - NOAA Affiliate
via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
>
> Hi John,
>
> I do have a question. The field name in my output model file
is not
> the same as the filed name in
> my analysis file. I get an error when I try to run grid_stat. My
> configuration file is as follows.
> ////////////////////////////////////////////////////////////
> ////////////////////
>
> // Forecast and observation fields to be verified
> //
> fcst = {
>
> field = [
> {
> name = "U_GRD_3_ISBL";
> level = "(*,*);
> }
> ];
>
> }
> ///////////////////////////////////////////////////////////////
> obs = {
>
> field = [
> {
> name = "U_GDS0_ISBL";
> level = "(*,*);
> }
> ];
>
> }
>
> Do the names in the observation or analysis file have to be the same
as in
> the model file? The error
> is the name = "U_GDS0_ISBL";
>
> Thanks,
> Sherrie
>
> On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Sherrie,
> >
> > Great, glad you were able to figure it out. Ideally, we'd create
a
> module
> > file for MET on theia so that all you'd need to do is run: module
load
> > met/6.0
> >
> > But unfortunately that doesn't exist yet.
> >
> > Thanks,
> > John Halley Gotway
> >
> > On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick - NOAA
Affiliate via
> RT
> > <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> > >
> > > Good Morning again.
> > >
> > > I just figured out how to get the library. So please
disregard my
> > > earlier email.
> > >
> > > Many thanks,
> > > Sherrie
> > >
> > > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Greetings,
> > > >
> > > > This message has been automatically generated in response to
the
> > > > creation of a trouble ticket regarding:
> > > > "missing libraries on the NOAA machine Theia",
> > > > a summary of which appears below.
> > > >
> > > > There is no need to reply to this message right now. Your
ticket has
> > > been
> > > > assigned an ID of [rt.rap.ucar.edu #80142].
> > > >
> > > > Please include the string:
> > > >
> > > > [rt.rap.ucar.edu #80142]
> > > >
> > > > in the subject line of all future correspondence about this
issue. To
> > do
> > > > so,
> > > > you may reply to this message.
> > > >
> > > > Thank you,
> > > > met_help at ucar.edu
> > > >
> > > > ------------------------------------------------------------
> > > -------------
> > > > Good Morning,
> > > >
> > > > I am just trying to get started running MET on Theia.
I have
> > > done
> > > > the following:
> > > > setenv LD_LIBRARY_PATH
> > > >
/scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_LIBRARY_PATH
> > > >
> > > > I am still missing a library however
> > > > grid_stat: error while loading shared libraries:
> libimf.so
> > > >
> > > > This library does not seem to be in the
> > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > > > directory. Do you know what module needs to loaded on Theia
in order
> > to
> > > > get this
> > > > library,
> > > >
> > > > Many Thanks,
> > > > Sherrie Fredrick
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: Sherrie Fredrick - NOAA Affiliate
Time: Thu Apr 13 13:11:52 2017
Hi John,
My files on Theia are in /home/Sherrie.Fredrick/MET. The
command I
am using to run MET is
/scratch4/BMC/dtc/MET/met-6.0/bin/grid_stat PGB.F024
erai_19990106.grib
grid_stat_config.
Thank you very much for you help.
Sherrie Fredrick
On Thu, Apr 13, 2017 at 12:59 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Sherrie,
>
> No they do not. It's fine to compare one field against another
field. If
> you'd like, you could post some sample files (forecast, observation,
and
> Grid-Stat config file) to our anonymous ftp site. Or just point me
to them
> on theia. I could run your command, get the same error, and suggest
how
> you might fix it.
>
> If you want to put them on our ftp site, please follow these
instructions:
> http://www.dtcenter.org/met/users/support/met_help.php#ftp
>
> Thanks,
> John
>
> On Thu, Apr 13, 2017 at 11:52 AM, Sherrie Fredrick - NOAA Affiliate
via RT
> <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> >
> > Hi John,
> >
> > I do have a question. The field name in my output model file
is not
> > the same as the filed name in
> > my analysis file. I get an error when I try to run grid_stat. My
> > configuration file is as follows.
> > ////////////////////////////////////////////////////////////
> > ////////////////////
> >
> > // Forecast and observation fields to be verified
> > //
> > fcst = {
> >
> > field = [
> > {
> > name = "U_GRD_3_ISBL";
> > level = "(*,*);
> > }
> > ];
> >
> > }
> > ///////////////////////////////////////////////////////////////
> > obs = {
> >
> > field = [
> > {
> > name = "U_GDS0_ISBL";
> > level = "(*,*);
> > }
> > ];
> >
> > }
> >
> > Do the names in the observation or analysis file have to be the
same as
> in
> > the model file? The error
> > is the name = "U_GDS0_ISBL";
> >
> > Thanks,
> > Sherrie
> >
> > On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Sherrie,
> > >
> > > Great, glad you were able to figure it out. Ideally, we'd
create a
> > module
> > > file for MET on theia so that all you'd need to do is run:
module load
> > > met/6.0
> > >
> > > But unfortunately that doesn't exist yet.
> > >
> > > Thanks,
> > > John Halley Gotway
> > >
> > > On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick - NOAA
Affiliate via
> > RT
> > > <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142
>
> > > >
> > > > Good Morning again.
> > > >
> > > > I just figured out how to get the library. So please
disregard
> my
> > > > earlier email.
> > > >
> > > > Many thanks,
> > > > Sherrie
> > > >
> > > > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Greetings,
> > > > >
> > > > > This message has been automatically generated in response to
the
> > > > > creation of a trouble ticket regarding:
> > > > > "missing libraries on the NOAA machine Theia",
> > > > > a summary of which appears below.
> > > > >
> > > > > There is no need to reply to this message right now. Your
ticket
> has
> > > > been
> > > > > assigned an ID of [rt.rap.ucar.edu #80142].
> > > > >
> > > > > Please include the string:
> > > > >
> > > > > [rt.rap.ucar.edu #80142]
> > > > >
> > > > > in the subject line of all future correspondence about this
issue.
> To
> > > do
> > > > > so,
> > > > > you may reply to this message.
> > > > >
> > > > > Thank you,
> > > > > met_help at ucar.edu
> > > > >
> > > > > ------------------------------------------------------------
> > > > -------------
> > > > > Good Morning,
> > > > >
> > > > > I am just trying to get started running MET on
Theia. I
> have
> > > > done
> > > > > the following:
> > > > > setenv LD_LIBRARY_PATH
> > > > >
/scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_LIBRARY_PATH
> > > > >
> > > > > I am still missing a library however
> > > > > grid_stat: error while loading shared
libraries:
> > libimf.so
> > > > >
> > > > > This library does not seem to be in the
> > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > > > > directory. Do you know what module needs to loaded on Theia
in
> order
> > > to
> > > > > get this
> > > > > library,
> > > > >
> > > > > Many Thanks,
> > > > > Sherrie Fredrick
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: John Halley Gotway
Time: Thu Apr 13 14:19:55 2017
Hi Sherrie,
I went to take a look at your data, but I don't have permission to see
/home/Sherrie.Fredrick
You could either open up permissions or copy the data elsewhere.
This would do it:
chmod -R 755 /home/Sherrie.Fredrick
Thanks,
John
On Thu, Apr 13, 2017 at 1:11 PM, Sherrie Fredrick - NOAA Affiliate via
RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
>
> Hi John,
>
> My files on Theia are in /home/Sherrie.Fredrick/MET. The
command I
> am using to run MET is
> /scratch4/BMC/dtc/MET/met-6.0/bin/grid_stat PGB.F024
erai_19990106.grib
> grid_stat_config.
>
> Thank you very much for you help.
> Sherrie Fredrick
>
> On Thu, Apr 13, 2017 at 12:59 PM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Sherrie,
> >
> > No they do not. It's fine to compare one field against another
field.
> If
> > you'd like, you could post some sample files (forecast,
observation, and
> > Grid-Stat config file) to our anonymous ftp site. Or just point
me to
> them
> > on theia. I could run your command, get the same error, and
suggest how
> > you might fix it.
> >
> > If you want to put them on our ftp site, please follow these
> instructions:
> > http://www.dtcenter.org/met/users/support/met_help.php#ftp
> >
> > Thanks,
> > John
> >
> > On Thu, Apr 13, 2017 at 11:52 AM, Sherrie Fredrick - NOAA
Affiliate via
> RT
> > <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> > >
> > > Hi John,
> > >
> > > I do have a question. The field name in my output model
file is
> not
> > > the same as the filed name in
> > > my analysis file. I get an error when I try to run grid_stat.
My
> > > configuration file is as follows.
> > > ////////////////////////////////////////////////////////////
> > > ////////////////////
> > >
> > > // Forecast and observation fields to be verified
> > > //
> > > fcst = {
> > >
> > > field = [
> > > {
> > > name = "U_GRD_3_ISBL";
> > > level = "(*,*);
> > > }
> > > ];
> > >
> > > }
> > > ///////////////////////////////////////////////////////////////
> > > obs = {
> > >
> > > field = [
> > > {
> > > name = "U_GDS0_ISBL";
> > > level = "(*,*);
> > > }
> > > ];
> > >
> > > }
> > >
> > > Do the names in the observation or analysis file have to be the
same as
> > in
> > > the model file? The error
> > > is the name = "U_GDS0_ISBL";
> > >
> > > Thanks,
> > > Sherrie
> > >
> > > On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Sherrie,
> > > >
> > > > Great, glad you were able to figure it out. Ideally, we'd
create a
> > > module
> > > > file for MET on theia so that all you'd need to do is run:
module
> load
> > > > met/6.0
> > > >
> > > > But unfortunately that doesn't exist yet.
> > > >
> > > > Thanks,
> > > > John Halley Gotway
> > > >
> > > > On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick - NOAA
Affiliate
> via
> > > RT
> > > > <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> > > > >
> > > > > Good Morning again.
> > > > >
> > > > > I just figured out how to get the library. So please
disregard
> > my
> > > > > earlier email.
> > > > >
> > > > > Many thanks,
> > > > > Sherrie
> > > > >
> > > > > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > > Greetings,
> > > > > >
> > > > > > This message has been automatically generated in response
to the
> > > > > > creation of a trouble ticket regarding:
> > > > > > "missing libraries on the NOAA machine Theia",
> > > > > > a summary of which appears below.
> > > > > >
> > > > > > There is no need to reply to this message right now. Your
ticket
> > has
> > > > > been
> > > > > > assigned an ID of [rt.rap.ucar.edu #80142].
> > > > > >
> > > > > > Please include the string:
> > > > > >
> > > > > > [rt.rap.ucar.edu #80142]
> > > > > >
> > > > > > in the subject line of all future correspondence about
this
> issue.
> > To
> > > > do
> > > > > > so,
> > > > > > you may reply to this message.
> > > > > >
> > > > > > Thank you,
> > > > > > met_help at ucar.edu
> > > > > >
> > > > > >
------------------------------------------------------------
> > > > > -------------
> > > > > > Good Morning,
> > > > > >
> > > > > > I am just trying to get started running MET on
Theia. I
> > have
> > > > > done
> > > > > > the following:
> > > > > > setenv LD_LIBRARY_PATH
> > > > > >
/scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_LIBRARY_PATH
> > > > > >
> > > > > > I am still missing a library however
> > > > > > grid_stat: error while loading shared
libraries:
> > > libimf.so
> > > > > >
> > > > > > This library does not seem to be in the
> > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > > > > > directory. Do you know what module needs to loaded on
Theia in
> > order
> > > > to
> > > > > > get this
> > > > > > library,
> > > > > >
> > > > > > Many Thanks,
> > > > > > Sherrie Fredrick
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: Sherrie Fredrick - NOAA Affiliate
Time: Thu Apr 13 15:01:11 2017
Hi John,
I did the chmod. I was able to fix the name error, but it now
does
not like the levels. I have
level = ["(*,*)"]; I also tried "(*,*)" this did not work either.
I
would like to process all of the
pressure levels if possible.
Thanks,
Sherrie
On Thu, Apr 13, 2017 at 2:19 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Hi Sherrie,
>
> I went to take a look at your data, but I don't have permission to
see
> /home/Sherrie.Fredrick
>
> You could either open up permissions or copy the data elsewhere.
>
> This would do it:
> chmod -R 755 /home/Sherrie.Fredrick
>
> Thanks,
> John
>
> On Thu, Apr 13, 2017 at 1:11 PM, Sherrie Fredrick - NOAA Affiliate
via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> >
> > Hi John,
> >
> > My files on Theia are in /home/Sherrie.Fredrick/MET. The
command I
> > am using to run MET is
> > /scratch4/BMC/dtc/MET/met-6.0/bin/grid_stat PGB.F024
erai_19990106.grib
> > grid_stat_config.
> >
> > Thank you very much for you help.
> > Sherrie Fredrick
> >
> > On Thu, Apr 13, 2017 at 12:59 PM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Sherrie,
> > >
> > > No they do not. It's fine to compare one field against another
field.
> > If
> > > you'd like, you could post some sample files (forecast,
observation,
> and
> > > Grid-Stat config file) to our anonymous ftp site. Or just point
me to
> > them
> > > on theia. I could run your command, get the same error, and
suggest
> how
> > > you might fix it.
> > >
> > > If you want to put them on our ftp site, please follow these
> > instructions:
> > > http://www.dtcenter.org/met/users/support/met_help.php#ftp
> > >
> > > Thanks,
> > > John
> > >
> > > On Thu, Apr 13, 2017 at 11:52 AM, Sherrie Fredrick - NOAA
Affiliate via
> > RT
> > > <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142
>
> > > >
> > > > Hi John,
> > > >
> > > > I do have a question. The field name in my output model
file is
> > not
> > > > the same as the filed name in
> > > > my analysis file. I get an error when I try to run grid_stat.
My
> > > > configuration file is as follows.
> > > > ////////////////////////////////////////////////////////////
> > > > ////////////////////
> > > >
> > > > // Forecast and observation fields to be verified
> > > > //
> > > > fcst = {
> > > >
> > > > field = [
> > > > {
> > > > name = "U_GRD_3_ISBL";
> > > > level = "(*,*);
> > > > }
> > > > ];
> > > >
> > > > }
> > > >
///////////////////////////////////////////////////////////////
> > > > obs = {
> > > >
> > > > field = [
> > > > {
> > > > name = "U_GDS0_ISBL";
> > > > level = "(*,*);
> > > > }
> > > > ];
> > > >
> > > > }
> > > >
> > > > Do the names in the observation or analysis file have to be
the same
> as
> > > in
> > > > the model file? The error
> > > > is the name = "U_GDS0_ISBL";
> > > >
> > > > Thanks,
> > > > Sherrie
> > > >
> > > > On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Sherrie,
> > > > >
> > > > > Great, glad you were able to figure it out. Ideally, we'd
create a
> > > > module
> > > > > file for MET on theia so that all you'd need to do is run:
module
> > load
> > > > > met/6.0
> > > > >
> > > > > But unfortunately that doesn't exist yet.
> > > > >
> > > > > Thanks,
> > > > > John Halley Gotway
> > > > >
> > > > > On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick - NOAA
Affiliate
> > via
> > > > RT
> > > > > <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> > > > > >
> > > > > > Good Morning again.
> > > > > >
> > > > > > I just figured out how to get the library. So please
> disregard
> > > my
> > > > > > earlier email.
> > > > > >
> > > > > > Many thanks,
> > > > > > Sherrie
> > > > > >
> > > > > > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via RT
<
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > > Greetings,
> > > > > > >
> > > > > > > This message has been automatically generated in
response to
> the
> > > > > > > creation of a trouble ticket regarding:
> > > > > > > "missing libraries on the NOAA machine Theia",
> > > > > > > a summary of which appears below.
> > > > > > >
> > > > > > > There is no need to reply to this message right now.
Your
> ticket
> > > has
> > > > > > been
> > > > > > > assigned an ID of [rt.rap.ucar.edu #80142].
> > > > > > >
> > > > > > > Please include the string:
> > > > > > >
> > > > > > > [rt.rap.ucar.edu #80142]
> > > > > > >
> > > > > > > in the subject line of all future correspondence about
this
> > issue.
> > > To
> > > > > do
> > > > > > > so,
> > > > > > > you may reply to this message.
> > > > > > >
> > > > > > > Thank you,
> > > > > > > met_help at ucar.edu
> > > > > > >
> > > > > > >
------------------------------------------------------------
> > > > > > -------------
> > > > > > > Good Morning,
> > > > > > >
> > > > > > > I am just trying to get started running MET on
Theia.
> I
> > > have
> > > > > > done
> > > > > > > the following:
> > > > > > > setenv LD_LIBRARY_PATH
> > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_
> LIBRARY_PATH
> > > > > > >
> > > > > > > I am still missing a library however
> > > > > > > grid_stat: error while loading shared
libraries:
> > > > libimf.so
> > > > > > >
> > > > > > > This library does not seem to be in the
> > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > > > > > > directory. Do you know what module needs to loaded on
Theia in
> > > order
> > > > > to
> > > > > > > get this
> > > > > > > library,
> > > > > > >
> > > > > > > Many Thanks,
> > > > > > > Sherrie Fredrick
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: John Halley Gotway
Time: Thu Apr 13 15:51:36 2017
Sherrie,
OK, I see what's going on. You're passing to Grid-Stat forecast and
observation files in GRIB1 format. The conventions for how to specify
the
"name" and "level" are different depending on the data you're passing
to
the MET tools. Using the "(*,*)" notation is specific to NetCDF
files.
For GRIB1, you set the "name" as the GRIB1 abbreviation. Just run
wgrib to
see the abbreviations or refer to the GRIB1 tables:
http://www.nco.ncep.noaa.gov/pmb/docs/on388/table2.html
As for setting the level values, please take a look at the README file
for
MET's config files:
/scratch4/BMC/dtc/MET/met-6.0/data/config/README
Search that file for "GRIB1"... this info is also included in the MET
User's Guide.
For the forecast, you've requested "U_GRD_3_ISBL" which I'm guessing
the
U-component of wind (i.e. UGRD) at some pressure level. For the
observation, wgrib shows "U" and "V" instead of "UGRD" and "VGRD".
That's
because they're created with a different GRIB table. Fortunately,
met-6.0
should be smart enough to figure this out.
I'll just show you an example for 850mb... please try using:
fcst = {
field = [
{ name = "UGRD"; level = "P850"; }
];
}
obs = {
field = [
{ name = "U"; level = "P850"; }
];
}
And to evaluate multiple levels, just use:
level = [ "P800", "P850", "P900" ];
Thanks,
John
On Thu, Apr 13, 2017 at 3:01 PM, Sherrie Fredrick - NOAA Affiliate via
RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
>
> Hi John,
>
> I did the chmod. I was able to fix the name error, but it now
does
> not like the levels. I have
> level = ["(*,*)"]; I also tried "(*,*)" this did not work either.
I
> would like to process all of the
> pressure levels if possible.
>
> Thanks,
> Sherrie
>
> On Thu, Apr 13, 2017 at 2:19 PM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Hi Sherrie,
> >
> > I went to take a look at your data, but I don't have permission to
see
> > /home/Sherrie.Fredrick
> >
> > You could either open up permissions or copy the data elsewhere.
> >
> > This would do it:
> > chmod -R 755 /home/Sherrie.Fredrick
> >
> > Thanks,
> > John
> >
> > On Thu, Apr 13, 2017 at 1:11 PM, Sherrie Fredrick - NOAA Affiliate
via
> RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> > >
> > > Hi John,
> > >
> > > My files on Theia are in /home/Sherrie.Fredrick/MET. The
> command I
> > > am using to run MET is
> > > /scratch4/BMC/dtc/MET/met-6.0/bin/grid_stat PGB.F024
> erai_19990106.grib
> > > grid_stat_config.
> > >
> > > Thank you very much for you help.
> > > Sherrie Fredrick
> > >
> > > On Thu, Apr 13, 2017 at 12:59 PM, John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Sherrie,
> > > >
> > > > No they do not. It's fine to compare one field against
another
> field.
> > > If
> > > > you'd like, you could post some sample files (forecast,
observation,
> > and
> > > > Grid-Stat config file) to our anonymous ftp site. Or just
point me
> to
> > > them
> > > > on theia. I could run your command, get the same error, and
suggest
> > how
> > > > you might fix it.
> > > >
> > > > If you want to put them on our ftp site, please follow these
> > > instructions:
> > > > http://www.dtcenter.org/met/users/support/met_help.php#ftp
> > > >
> > > > Thanks,
> > > > John
> > > >
> > > > On Thu, Apr 13, 2017 at 11:52 AM, Sherrie Fredrick - NOAA
Affiliate
> via
> > > RT
> > > > <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> > > > >
> > > > > Hi John,
> > > > >
> > > > > I do have a question. The field name in my output
model file
> is
> > > not
> > > > > the same as the filed name in
> > > > > my analysis file. I get an error when I try to run
grid_stat. My
> > > > > configuration file is as follows.
> > > > > ////////////////////////////////////////////////////////////
> > > > > ////////////////////
> > > > >
> > > > > // Forecast and observation fields to be verified
> > > > > //
> > > > > fcst = {
> > > > >
> > > > > field = [
> > > > > {
> > > > > name = "U_GRD_3_ISBL";
> > > > > level = "(*,*);
> > > > > }
> > > > > ];
> > > > >
> > > > > }
> > > > >
///////////////////////////////////////////////////////////////
> > > > > obs = {
> > > > >
> > > > > field = [
> > > > > {
> > > > > name = "U_GDS0_ISBL";
> > > > > level = "(*,*);
> > > > > }
> > > > > ];
> > > > >
> > > > > }
> > > > >
> > > > > Do the names in the observation or analysis file have to be
the
> same
> > as
> > > > in
> > > > > the model file? The error
> > > > > is the name = "U_GDS0_ISBL";
> > > > >
> > > > > Thanks,
> > > > > Sherrie
> > > > >
> > > > > On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via RT
<
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > > Sherrie,
> > > > > >
> > > > > > Great, glad you were able to figure it out. Ideally, we'd
> create a
> > > > > module
> > > > > > file for MET on theia so that all you'd need to do is run:
module
> > > load
> > > > > > met/6.0
> > > > > >
> > > > > > But unfortunately that doesn't exist yet.
> > > > > >
> > > > > > Thanks,
> > > > > > John Halley Gotway
> > > > > >
> > > > > > On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick - NOAA
> Affiliate
> > > via
> > > > > RT
> > > > > > <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142
> >
> > > > > > >
> > > > > > > Good Morning again.
> > > > > > >
> > > > > > > I just figured out how to get the library. So
please
> > disregard
> > > > my
> > > > > > > earlier email.
> > > > > > >
> > > > > > > Many thanks,
> > > > > > > Sherrie
> > > > > > >
> > > > > > > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu via
RT <
> > > > > > > met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > > Greetings,
> > > > > > > >
> > > > > > > > This message has been automatically generated in
response to
> > the
> > > > > > > > creation of a trouble ticket regarding:
> > > > > > > > "missing libraries on the NOAA machine Theia",
> > > > > > > > a summary of which appears below.
> > > > > > > >
> > > > > > > > There is no need to reply to this message right now.
Your
> > ticket
> > > > has
> > > > > > > been
> > > > > > > > assigned an ID of [rt.rap.ucar.edu #80142].
> > > > > > > >
> > > > > > > > Please include the string:
> > > > > > > >
> > > > > > > > [rt.rap.ucar.edu #80142]
> > > > > > > >
> > > > > > > > in the subject line of all future correspondence about
this
> > > issue.
> > > > To
> > > > > > do
> > > > > > > > so,
> > > > > > > > you may reply to this message.
> > > > > > > >
> > > > > > > > Thank you,
> > > > > > > > met_help at ucar.edu
> > > > > > > >
> > > > > > > >
------------------------------------------------------------
> > > > > > > -------------
> > > > > > > > Good Morning,
> > > > > > > >
> > > > > > > > I am just trying to get started running MET on
Theia.
> > I
> > > > have
> > > > > > > done
> > > > > > > > the following:
> > > > > > > > setenv LD_LIBRARY_PATH
> > > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_
> > LIBRARY_PATH
> > > > > > > >
> > > > > > > > I am still missing a library however
> > > > > > > > grid_stat: error while loading shared
libraries:
> > > > > libimf.so
> > > > > > > >
> > > > > > > > This library does not seem to be in the
> > > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > > > > > > > directory. Do you know what module needs to loaded on
Theia
> in
> > > > order
> > > > > > to
> > > > > > > > get this
> > > > > > > > library,
> > > > > > > >
> > > > > > > > Many Thanks,
> > > > > > > > Sherrie Fredrick
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: Sherrie Fredrick - NOAA Affiliate
Time: Thu Apr 13 16:52:04 2017
Hi John,
Thank you very much for your help. I have never run MET before so
I
really
appreciate your help. I will try this first thing tomorrow.
Sherrie
On Thu, Apr 13, 2017 at 5:51 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Sherrie,
>
> OK, I see what's going on. You're passing to Grid-Stat forecast and
> observation files in GRIB1 format. The conventions for how to
specify the
> "name" and "level" are different depending on the data you're
passing to
> the MET tools. Using the "(*,*)" notation is specific to NetCDF
files.
>
> For GRIB1, you set the "name" as the GRIB1 abbreviation. Just run
wgrib to
> see the abbreviations or refer to the GRIB1 tables:
> http://www.nco.ncep.noaa.gov/pmb/docs/on388/table2.html
>
> As for setting the level values, please take a look at the README
file for
> MET's config files:
> /scratch4/BMC/dtc/MET/met-6.0/data/config/README
>
> Search that file for "GRIB1"... this info is also included in the
MET
> User's Guide.
>
> For the forecast, you've requested "U_GRD_3_ISBL" which I'm guessing
the
> U-component of wind (i.e. UGRD) at some pressure level. For the
> observation, wgrib shows "U" and "V" instead of "UGRD" and "VGRD".
That's
> because they're created with a different GRIB table. Fortunately,
met-6.0
> should be smart enough to figure this out.
>
> I'll just show you an example for 850mb... please try using:
>
> fcst = {
> field = [
> { name = "UGRD"; level = "P850"; }
> ];
> }
>
> obs = {
> field = [
> { name = "U"; level = "P850"; }
> ];
> }
>
> And to evaluate multiple levels, just use:
> level = [ "P800", "P850", "P900" ];
>
> Thanks,
> John
>
>
> On Thu, Apr 13, 2017 at 3:01 PM, Sherrie Fredrick - NOAA Affiliate
via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> >
> > Hi John,
> >
> > I did the chmod. I was able to fix the name error, but it
now does
> > not like the levels. I have
> > level = ["(*,*)"]; I also tried "(*,*)" this did not work
either. I
> > would like to process all of the
> > pressure levels if possible.
> >
> > Thanks,
> > Sherrie
> >
> > On Thu, Apr 13, 2017 at 2:19 PM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Hi Sherrie,
> > >
> > > I went to take a look at your data, but I don't have permission
to see
> > > /home/Sherrie.Fredrick
> > >
> > > You could either open up permissions or copy the data elsewhere.
> > >
> > > This would do it:
> > > chmod -R 755 /home/Sherrie.Fredrick
> > >
> > > Thanks,
> > > John
> > >
> > > On Thu, Apr 13, 2017 at 1:11 PM, Sherrie Fredrick - NOAA
Affiliate via
> > RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142
>
> > > >
> > > > Hi John,
> > > >
> > > > My files on Theia are in /home/Sherrie.Fredrick/MET.
The
> > command I
> > > > am using to run MET is
> > > > /scratch4/BMC/dtc/MET/met-6.0/bin/grid_stat PGB.F024
> > erai_19990106.grib
> > > > grid_stat_config.
> > > >
> > > > Thank you very much for you help.
> > > > Sherrie Fredrick
> > > >
> > > > On Thu, Apr 13, 2017 at 12:59 PM, John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Sherrie,
> > > > >
> > > > > No they do not. It's fine to compare one field against
another
> > field.
> > > > If
> > > > > you'd like, you could post some sample files (forecast,
> observation,
> > > and
> > > > > Grid-Stat config file) to our anonymous ftp site. Or just
point me
> > to
> > > > them
> > > > > on theia. I could run your command, get the same error, and
> suggest
> > > how
> > > > > you might fix it.
> > > > >
> > > > > If you want to put them on our ftp site, please follow these
> > > > instructions:
> > > > >
http://www.dtcenter.org/met/users/support/met_help.php#ftp
> > > > >
> > > > > Thanks,
> > > > > John
> > > > >
> > > > > On Thu, Apr 13, 2017 at 11:52 AM, Sherrie Fredrick - NOAA
Affiliate
> > via
> > > > RT
> > > > > <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
> > > > > >
> > > > > > Hi John,
> > > > > >
> > > > > > I do have a question. The field name in my output
model
> file
> > is
> > > > not
> > > > > > the same as the filed name in
> > > > > > my analysis file. I get an error when I try to run
grid_stat.
> My
> > > > > > configuration file is as follows.
> > > > > >
////////////////////////////////////////////////////////////
> > > > > > ////////////////////
> > > > > >
> > > > > > // Forecast and observation fields to be verified
> > > > > > //
> > > > > > fcst = {
> > > > > >
> > > > > > field = [
> > > > > > {
> > > > > > name = "U_GRD_3_ISBL";
> > > > > > level = "(*,*);
> > > > > > }
> > > > > > ];
> > > > > >
> > > > > > }
> > > > > >
///////////////////////////////////////////////////////////////
> > > > > > obs = {
> > > > > >
> > > > > > field = [
> > > > > > {
> > > > > > name = "U_GDS0_ISBL";
> > > > > > level = "(*,*);
> > > > > > }
> > > > > > ];
> > > > > >
> > > > > > }
> > > > > >
> > > > > > Do the names in the observation or analysis file have to
be the
> > same
> > > as
> > > > > in
> > > > > > the model file? The error
> > > > > > is the name = "U_GDS0_ISBL";
> > > > > >
> > > > > > Thanks,
> > > > > > Sherrie
> > > > > >
> > > > > > On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via
RT <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > > Sherrie,
> > > > > > >
> > > > > > > Great, glad you were able to figure it out. Ideally,
we'd
> > create a
> > > > > > module
> > > > > > > file for MET on theia so that all you'd need to do is
run:
> module
> > > > load
> > > > > > > met/6.0
> > > > > > >
> > > > > > > But unfortunately that doesn't exist yet.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > John Halley Gotway
> > > > > > >
> > > > > > > On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick -
NOAA
> > Affiliate
> > > > via
> > > > > > RT
> > > > > > > <
> > > > > > > met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=80142
> > >
> > > > > > > >
> > > > > > > > Good Morning again.
> > > > > > > >
> > > > > > > > I just figured out how to get the library. So
please
> > > disregard
> > > > > my
> > > > > > > > earlier email.
> > > > > > > >
> > > > > > > > Many thanks,
> > > > > > > > Sherrie
> > > > > > > >
> > > > > > > > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu
via RT <
> > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > > Greetings,
> > > > > > > > >
> > > > > > > > > This message has been automatically generated in
response
> to
> > > the
> > > > > > > > > creation of a trouble ticket regarding:
> > > > > > > > > "missing libraries on the NOAA machine
Theia",
> > > > > > > > > a summary of which appears below.
> > > > > > > > >
> > > > > > > > > There is no need to reply to this message right now.
Your
> > > ticket
> > > > > has
> > > > > > > > been
> > > > > > > > > assigned an ID of [rt.rap.ucar.edu #80142].
> > > > > > > > >
> > > > > > > > > Please include the string:
> > > > > > > > >
> > > > > > > > > [rt.rap.ucar.edu #80142]
> > > > > > > > >
> > > > > > > > > in the subject line of all future correspondence
about this
> > > > issue.
> > > > > To
> > > > > > > do
> > > > > > > > > so,
> > > > > > > > > you may reply to this message.
> > > > > > > > >
> > > > > > > > > Thank you,
> > > > > > > > > met_help at ucar.edu
> > > > > > > > >
> > > > > > > > > ------------------------------
> ------------------------------
> > > > > > > > -------------
> > > > > > > > > Good Morning,
> > > > > > > > >
> > > > > > > > > I am just trying to get started running MET
on
> Theia.
> > > I
> > > > > have
> > > > > > > > done
> > > > > > > > > the following:
> > > > > > > > > setenv LD_LIBRARY_PATH
> > > > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_
> > > LIBRARY_PATH
> > > > > > > > >
> > > > > > > > > I am still missing a library however
> > > > > > > > > grid_stat: error while loading shared
> libraries:
> > > > > > libimf.so
> > > > > > > > >
> > > > > > > > > This library does not seem to be in the
> > > > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
> > > > > > > > > directory. Do you know what module needs to loaded
on
> Theia
> > in
> > > > > order
> > > > > > > to
> > > > > > > > > get this
> > > > > > > > > library,
> > > > > > > > >
> > > > > > > > > Many Thanks,
> > > > > > > > > Sherrie Fredrick
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: missing libraries on the NOAA machine Theia
From: Sherrie Fredrick - NOAA Affiliate
Time: Fri Apr 14 08:40:14 2017
Hi John,
I made the changes you suggested and it worked.
Thank you very much for your help. I now have a MET run :-)
Sherrie Fredrick
On Thu, Apr 13, 2017 at 4:52 PM, Sherrie Fredrick - NOAA Affiliate <
sherrie.fredrick at noaa.gov> wrote:
> Hi John,
>
> Thank you very much for your help. I have never run MET before
so I
> really
> appreciate your help. I will try this first thing tomorrow.
>
> Sherrie
>
> On Thu, Apr 13, 2017 at 5:51 PM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
>> Sherrie,
>>
>> OK, I see what's going on. You're passing to Grid-Stat forecast
and
>> observation files in GRIB1 format. The conventions for how to
specify the
>> "name" and "level" are different depending on the data you're
passing to
>> the MET tools. Using the "(*,*)" notation is specific to NetCDF
files.
>>
>> For GRIB1, you set the "name" as the GRIB1 abbreviation. Just run
wgrib
>> to
>> see the abbreviations or refer to the GRIB1 tables:
>> http://www.nco.ncep.noaa.gov/pmb/docs/on388/table2.html
>>
>> As for setting the level values, please take a look at the README
file for
>> MET's config files:
>> /scratch4/BMC/dtc/MET/met-6.0/data/config/README
>>
>> Search that file for "GRIB1"... this info is also included in the
MET
>> User's Guide.
>>
>> For the forecast, you've requested "U_GRD_3_ISBL" which I'm
guessing the
>> U-component of wind (i.e. UGRD) at some pressure level. For the
>> observation, wgrib shows "U" and "V" instead of "UGRD" and "VGRD".
That's
>> because they're created with a different GRIB table. Fortunately,
met-6.0
>> should be smart enough to figure this out.
>>
>> I'll just show you an example for 850mb... please try using:
>>
>> fcst = {
>> field = [
>> { name = "UGRD"; level = "P850"; }
>> ];
>> }
>>
>> obs = {
>> field = [
>> { name = "U"; level = "P850"; }
>> ];
>> }
>>
>> And to evaluate multiple levels, just use:
>> level = [ "P800", "P850", "P900" ];
>>
>> Thanks,
>> John
>>
>>
>> On Thu, Apr 13, 2017 at 3:01 PM, Sherrie Fredrick - NOAA Affiliate
via RT
>> <
>> met_help at ucar.edu> wrote:
>>
>> >
>> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
>> >
>> > Hi John,
>> >
>> > I did the chmod. I was able to fix the name error, but it
now does
>> > not like the levels. I have
>> > level = ["(*,*)"]; I also tried "(*,*)" this did not work
either. I
>> > would like to process all of the
>> > pressure levels if possible.
>> >
>> > Thanks,
>> > Sherrie
>> >
>> > On Thu, Apr 13, 2017 at 2:19 PM, John Halley Gotway via RT <
>> > met_help at ucar.edu> wrote:
>> >
>> > > Hi Sherrie,
>> > >
>> > > I went to take a look at your data, but I don't have permission
to see
>> > > /home/Sherrie.Fredrick
>> > >
>> > > You could either open up permissions or copy the data
elsewhere.
>> > >
>> > > This would do it:
>> > > chmod -R 755 /home/Sherrie.Fredrick
>> > >
>> > > Thanks,
>> > > John
>> > >
>> > > On Thu, Apr 13, 2017 at 1:11 PM, Sherrie Fredrick - NOAA
Affiliate via
>> > RT <
>> > > met_help at ucar.edu> wrote:
>> > >
>> > > >
>> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142
>
>> > > >
>> > > > Hi John,
>> > > >
>> > > > My files on Theia are in /home/Sherrie.Fredrick/MET.
The
>> > command I
>> > > > am using to run MET is
>> > > > /scratch4/BMC/dtc/MET/met-6.0/bin/grid_stat PGB.F024
>> > erai_19990106.grib
>> > > > grid_stat_config.
>> > > >
>> > > > Thank you very much for you help.
>> > > > Sherrie Fredrick
>> > > >
>> > > > On Thu, Apr 13, 2017 at 12:59 PM, John Halley Gotway via RT <
>> > > > met_help at ucar.edu> wrote:
>> > > >
>> > > > > Sherrie,
>> > > > >
>> > > > > No they do not. It's fine to compare one field against
another
>> > field.
>> > > > If
>> > > > > you'd like, you could post some sample files (forecast,
>> observation,
>> > > and
>> > > > > Grid-Stat config file) to our anonymous ftp site. Or just
point
>> me
>> > to
>> > > > them
>> > > > > on theia. I could run your command, get the same error,
and
>> suggest
>> > > how
>> > > > > you might fix it.
>> > > > >
>> > > > > If you want to put them on our ftp site, please follow
these
>> > > > instructions:
>> > > > >
http://www.dtcenter.org/met/users/support/met_help.php#ftp
>> > > > >
>> > > > > Thanks,
>> > > > > John
>> > > > >
>> > > > > On Thu, Apr 13, 2017 at 11:52 AM, Sherrie Fredrick - NOAA
>> Affiliate
>> > via
>> > > > RT
>> > > > > <
>> > > > > met_help at ucar.edu> wrote:
>> > > > >
>> > > > > >
>> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80142 >
>> > > > > >
>> > > > > > Hi John,
>> > > > > >
>> > > > > > I do have a question. The field name in my output
model
>> file
>> > is
>> > > > not
>> > > > > > the same as the filed name in
>> > > > > > my analysis file. I get an error when I try to run
grid_stat.
>> My
>> > > > > > configuration file is as follows.
>> > > > > >
////////////////////////////////////////////////////////////
>> > > > > > ////////////////////
>> > > > > >
>> > > > > > // Forecast and observation fields to be verified
>> > > > > > //
>> > > > > > fcst = {
>> > > > > >
>> > > > > > field = [
>> > > > > > {
>> > > > > > name = "U_GRD_3_ISBL";
>> > > > > > level = "(*,*);
>> > > > > > }
>> > > > > > ];
>> > > > > >
>> > > > > > }
>> > > > > >
///////////////////////////////////////////////////////////////
>> > > > > > obs = {
>> > > > > >
>> > > > > > field = [
>> > > > > > {
>> > > > > > name = "U_GDS0_ISBL";
>> > > > > > level = "(*,*);
>> > > > > > }
>> > > > > > ];
>> > > > > >
>> > > > > > }
>> > > > > >
>> > > > > > Do the names in the observation or analysis file have to
be the
>> > same
>> > > as
>> > > > > in
>> > > > > > the model file? The error
>> > > > > > is the name = "U_GDS0_ISBL";
>> > > > > >
>> > > > > > Thanks,
>> > > > > > Sherrie
>> > > > > >
>> > > > > > On Thu, Apr 13, 2017 at 11:18 AM, John Halley Gotway via
RT <
>> > > > > > met_help at ucar.edu> wrote:
>> > > > > >
>> > > > > > > Sherrie,
>> > > > > > >
>> > > > > > > Great, glad you were able to figure it out. Ideally,
we'd
>> > create a
>> > > > > > module
>> > > > > > > file for MET on theia so that all you'd need to do is
run:
>> module
>> > > > load
>> > > > > > > met/6.0
>> > > > > > >
>> > > > > > > But unfortunately that doesn't exist yet.
>> > > > > > >
>> > > > > > > Thanks,
>> > > > > > > John Halley Gotway
>> > > > > > >
>> > > > > > > On Thu, Apr 13, 2017 at 11:12 AM, Sherrie Fredrick -
NOAA
>> > Affiliate
>> > > > via
>> > > > > > RT
>> > > > > > > <
>> > > > > > > met_help at ucar.edu> wrote:
>> > > > > > >
>> > > > > > > >
>> > > > > > > > <URL: https://rt.rap.ucar.edu/rt/Tic
>> ket/Display.html?id=80142
>> > >
>> > > > > > > >
>> > > > > > > > Good Morning again.
>> > > > > > > >
>> > > > > > > > I just figured out how to get the library. So
please
>> > > disregard
>> > > > > my
>> > > > > > > > earlier email.
>> > > > > > > >
>> > > > > > > > Many thanks,
>> > > > > > > > Sherrie
>> > > > > > > >
>> > > > > > > > On Thu, Apr 13, 2017 at 11:09 AM, met_help at ucar.edu
via RT
>> <
>> > > > > > > > met_help at ucar.edu> wrote:
>> > > > > > > >
>> > > > > > > > > Greetings,
>> > > > > > > > >
>> > > > > > > > > This message has been automatically generated in
response
>> to
>> > > the
>> > > > > > > > > creation of a trouble ticket regarding:
>> > > > > > > > > "missing libraries on the NOAA machine
Theia",
>> > > > > > > > > a summary of which appears below.
>> > > > > > > > >
>> > > > > > > > > There is no need to reply to this message right
now. Your
>> > > ticket
>> > > > > has
>> > > > > > > > been
>> > > > > > > > > assigned an ID of [rt.rap.ucar.edu #80142].
>> > > > > > > > >
>> > > > > > > > > Please include the string:
>> > > > > > > > >
>> > > > > > > > > [rt.rap.ucar.edu #80142]
>> > > > > > > > >
>> > > > > > > > > in the subject line of all future correspondence
about
>> this
>> > > > issue.
>> > > > > To
>> > > > > > > do
>> > > > > > > > > so,
>> > > > > > > > > you may reply to this message.
>> > > > > > > > >
>> > > > > > > > > Thank you,
>> > > > > > > > > met_help at ucar.edu
>> > > > > > > > >
>> > > > > > > > > ------------------------------
>> ------------------------------
>> > > > > > > > -------------
>> > > > > > > > > Good Morning,
>> > > > > > > > >
>> > > > > > > > > I am just trying to get started running MET
on
>> Theia.
>> > > I
>> > > > > have
>> > > > > > > > done
>> > > > > > > > > the following:
>> > > > > > > > > setenv LD_LIBRARY_PATH
>> > > > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib::$LD_
>> > > LIBRARY_PATH
>> > > > > > > > >
>> > > > > > > > > I am still missing a library however
>> > > > > > > > > grid_stat: error while loading shared
>> libraries:
>> > > > > > libimf.so
>> > > > > > > > >
>> > > > > > > > > This library does not seem to be in the
>> > > > > > > > > /scratch4/BMC/dtc/MET/external_libs_intel/lib
>> > > > > > > > > directory. Do you know what module needs to loaded
on
>> Theia
>> > in
>> > > > > order
>> > > > > > > to
>> > > > > > > > > get this
>> > > > > > > > > library,
>> > > > > > > > >
>> > > > > > > > > Many Thanks,
>> > > > > > > > > Sherrie Fredrick
>> > > > > > > > >
>> > > > > > > > >
>> > > > > > > >
>> > > > > > > >
>> > > > > > >
>> > > > > > >
>> > > > > >
>> > > > > >
>> > > > >
>> > > > >
>> > > >
>> > > >
>> > >
>> > >
>> >
>> >
>>
>>
>
------------------------------------------------
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