[Met_help] [rt.rap.ucar.edu #76783] History for Problems while compiling met
Julie Prestopnik via RT
met_help at ucar.edu
Tue Jun 28 09:28:06 MDT 2016
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hello,
While compiling met I get the following error:
make[4]: Entering directory
`/home/nwp/met/met-5.1_bugfix/src/basic/vx_config'
make[4]: *** No rule to make target `config.tab.yy', needed by `
config.tab.cc'. Stop.
In the met_help archives I saw that someone got the same problem and that
there is a temporary workaround by modifying two files. Can you please send
me those files?
I'm compiling met on Centos 7 with gfortran. I'm using the latest version
of met (met-5.1_bugfix.tar.gz).
Thanks in advanced.
Best regards,
Diogo
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Problems while compiling met
From: Julie Prestopnik
Time: Fri Jun 17 09:55:16 2016
Thank you for looking at the previous met_help archives. As you saw,
with a
recent switch to a new operating system, we encountered some problems
with
flex and bison. We do not have a good solution to the problem yet,
however, we have a temporary workaround, which I hope will work for
you.
I'd like to have you start over with your build and installation.
Please
proceed in the following way:
- unpack the met-5.1 tarball.
- apply the met-5.1 patches.
- update the Makefiles with the ones that are attached here (in the
way I
describe below).
- run configure.
- run make install.
I have attached two files which I modified:
vx_color.Makefile.in <http://vx_color.makefile.in/>
vx_config.Makefile.in <http://vx_config.makefile.in/>
Please take vx_color.Makefile.in <http://vx_color.makefile.in/>,
rename it
to Makefile.in and place it in your src/libcode/vx_color/ directory,
replacing the existing Makefile.in file.
Please take vx_config.Makefile.in <http://vx_config.makefile.in/>,
rename
it to Makefile.in and place it in your src/basic/vx_config/
directory,
replacing the existing Makefile.in file.
Please give that a try and let me know how it works out for you.
Thanks,
Julie
On Fri, Jun 17, 2016 at 6:13 AM, Diogo Dias via RT <met_help at ucar.edu>
wrote:
>
> Fri Jun 17 06:13:28 2016: Request 76783 was acted upon.
> Transaction: Ticket created by diogoadias88 at gmail.com
> Queue: met_help
> Subject: Problems while compiling met
> Owner: Nobody
> Requestors: diogoadias88 at gmail.com
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=76783 >
>
>
> Hello,
>
> While compiling met I get the following error:
>
> make[4]: Entering directory
> `/home/nwp/met/met-5.1_bugfix/src/basic/vx_config'
> make[4]: *** No rule to make target `config.tab.yy', needed by `
> config.tab.cc'. Stop.
>
> In the met_help archives I saw that someone got the same problem and
that
> there is a temporary workaround by modifying two files. Can you
please send
> me those files?
>
> I'm compiling met on Centos 7 with gfortran. I'm using the latest
version
> of met (met-5.1_bugfix.tar.gz).
>
> Thanks in advanced.
>
> Best regards,
> Diogo
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Problems while compiling met
From: Stephen Dowdy
Time: Fri Jun 17 15:04:04 2016
On Fri Jun 17 09:55:16 2016, jpresto wrote:
> Thank you for looking at the previous met_help archives. As you saw,
> with a
> recent switch to a new operating system, we encountered some
problems
> with
> flex and bison. We do not have a good solution to the problem yet,
> however, we have a temporary workaround, which I hope will work for
> you.
Julie and all,
Even simpler than having users download and replace files is just :
touch config.tab.yy color_parser_yacc.yy
touch config.tab.cc color_parser_yacc.cc
Make will see that the target '.cc' is NEWER and presume it was built
previously by the make implicit suffix fules. doesn't matter that the
origin file config.tab.yy (and color_parser_yacc.yy) is empty and
could never actually MAKE the .cc ;)
This presumes nobody does any 'make clean' that might remove the .cc
files.
Again, as i discussed in MET-604 Jira, it seems that the _SOURCES
references should NEVER mention the intermediate flex/bison output
files.
--stephen
------------------------------------------------
Subject: Problems while compiling met
From: Diogo Dias
Time: Tue Jun 28 03:45:35 2016
Hi Julie,
Thanks for the help.
This workaround solved the problem. I have successfully compiled met
with
grib2 support.
I have also successfully compile met with MODIS-Regrid tool but in the
process I've found a problem with hdfeos. Running hdfeos make check
return
the following error:
./SubsetGrid
make[2]: *** [grid_demo] Segmentation fault
make[2]: Leaving directory `/home/nwp/libs/hdf/hdfeos/samples'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/home/nwp/libs/hdf/hdfeos/samples'
make: *** [check-recursive] Error 1
Despite this error, running make test in met return no errors. Do you
think
this is a problem?
Please, find attached some log files.
Regards,
Diogo
2016-06-17 16:55 GMT+01:00 Julie Prestopnik via RT
<met_help at ucar.edu>:
> Thank you for looking at the previous met_help archives. As you saw,
with a
> recent switch to a new operating system, we encountered some
problems with
> flex and bison. We do not have a good solution to the problem yet,
> however, we have a temporary workaround, which I hope will work for
you.
>
> I'd like to have you start over with your build and installation.
Please
> proceed in the following way:
>
> - unpack the met-5.1 tarball.
> - apply the met-5.1 patches.
> - update the Makefiles with the ones that are attached here (in the
way I
> describe below).
> - run configure.
> - run make install.
>
> I have attached two files which I modified:
>
> vx_color.Makefile.in <http://vx_color.makefile.in/>
> vx_config.Makefile.in <http://vx_config.makefile.in/>
>
> Please take vx_color.Makefile.in <http://vx_color.makefile.in/>,
rename it
> to Makefile.in and place it in your src/libcode/vx_color/ directory,
> replacing the existing Makefile.in file.
>
> Please take vx_config.Makefile.in <http://vx_config.makefile.in/>,
rename
> it to Makefile.in and place it in your src/basic/vx_config/
directory,
> replacing the existing Makefile.in file.
>
> Please give that a try and let me know how it works out for you.
>
> Thanks,
> Julie
>
> On Fri, Jun 17, 2016 at 6:13 AM, Diogo Dias via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > Fri Jun 17 06:13:28 2016: Request 76783 was acted upon.
> > Transaction: Ticket created by diogoadias88 at gmail.com
> > Queue: met_help
> > Subject: Problems while compiling met
> > Owner: Nobody
> > Requestors: diogoadias88 at gmail.com
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=76783 >
> >
> >
> > Hello,
> >
> > While compiling met I get the following error:
> >
> > make[4]: Entering directory
> > `/home/nwp/met/met-5.1_bugfix/src/basic/vx_config'
> > make[4]: *** No rule to make target `config.tab.yy', needed by `
> > config.tab.cc'. Stop.
> >
> > In the met_help archives I saw that someone got the same problem
and that
> > there is a temporary workaround by modifying two files. Can you
please
> send
> > me those files?
> >
> > I'm compiling met on Centos 7 with gfortran. I'm using the latest
version
> > of met (met-5.1_bugfix.tar.gz).
> >
> > Thanks in advanced.
> >
> > Best regards,
> > Diogo
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: Problems while compiling met
From: Julie Prestopnik
Time: Tue Jun 28 09:26:16 2016
Hi Diogo.
I'm glad that the workaround solved the problem and that you were able
to
successfully compile MET with grib2 support, but I am sorry to hear
about
your trouble with running "hdfeos make check".
Do you anticipate using the MODIS-Regrid tool? If not, I wouldn't
worry
about it. If so, it is difficult to say if there would be a problem
or not.
I see that the HDF EOS Tools and Information Center has a help page
where
you can review a FAQ and an email address that you could submit a
question
to:
http://hdfeos.org/help/index.php
They should be able to help you with the segmentation fault that is
occurring when you run "hdfeos make check".
You may also like to try to run the modis_regrid tool following the
steps
in our online tutorial:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/modis_regrid/index.php
to see if you encounter any problems.
I hope that helps.
I'll go ahead and close this ticket. Please submit a new ticket if
you
encounter any other problems with MET, and we'll be happy to help.
Thanks,
Julie
On Tue, Jun 28, 2016 at 3:45 AM, Diogo Dias via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=76783 >
>
> Hi Julie,
>
> Thanks for the help.
>
> This workaround solved the problem. I have successfully compiled met
with
> grib2 support.
> I have also successfully compile met with MODIS-Regrid tool but in
the
> process I've found a problem with hdfeos. Running hdfeos make check
return
> the following error:
>
> ./SubsetGrid
> make[2]: *** [grid_demo] Segmentation fault
> make[2]: Leaving directory `/home/nwp/libs/hdf/hdfeos/samples'
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory `/home/nwp/libs/hdf/hdfeos/samples'
> make: *** [check-recursive] Error 1
>
> Despite this error, running make test in met return no errors. Do
you think
> this is a problem?
>
> Please, find attached some log files.
>
> Regards,
> Diogo
>
> 2016-06-17 16:55 GMT+01:00 Julie Prestopnik via RT
<met_help at ucar.edu>:
>
> > Thank you for looking at the previous met_help archives. As you
saw,
> with a
> > recent switch to a new operating system, we encountered some
problems
> with
> > flex and bison. We do not have a good solution to the problem
yet,
> > however, we have a temporary workaround, which I hope will work
for you.
> >
> > I'd like to have you start over with your build and installation.
Please
> > proceed in the following way:
> >
> > - unpack the met-5.1 tarball.
> > - apply the met-5.1 patches.
> > - update the Makefiles with the ones that are attached here (in
the way I
> > describe below).
> > - run configure.
> > - run make install.
> >
> > I have attached two files which I modified:
> >
> > vx_color.Makefile.in <http://vx_color.makefile.in/>
> > vx_config.Makefile.in <http://vx_config.makefile.in/>
> >
> > Please take vx_color.Makefile.in <http://vx_color.makefile.in/>,
rename
> it
> > to Makefile.in and place it in your src/libcode/vx_color/
directory,
> > replacing the existing Makefile.in file.
> >
> > Please take vx_config.Makefile.in <http://vx_config.makefile.in/>,
> rename
> > it to Makefile.in and place it in your src/basic/vx_config/
directory,
> > replacing the existing Makefile.in file.
> >
> > Please give that a try and let me know how it works out for you.
> >
> > Thanks,
> > Julie
> >
> > On Fri, Jun 17, 2016 at 6:13 AM, Diogo Dias via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > Fri Jun 17 06:13:28 2016: Request 76783 was acted upon.
> > > Transaction: Ticket created by diogoadias88 at gmail.com
> > > Queue: met_help
> > > Subject: Problems while compiling met
> > > Owner: Nobody
> > > Requestors: diogoadias88 at gmail.com
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=76783
> >
> > >
> > >
> > > Hello,
> > >
> > > While compiling met I get the following error:
> > >
> > > make[4]: Entering directory
> > > `/home/nwp/met/met-5.1_bugfix/src/basic/vx_config'
> > > make[4]: *** No rule to make target `config.tab.yy', needed by `
> > > config.tab.cc'. Stop.
> > >
> > > In the met_help archives I saw that someone got the same problem
and
> that
> > > there is a temporary workaround by modifying two files. Can you
please
> > send
> > > me those files?
> > >
> > > I'm compiling met on Centos 7 with gfortran. I'm using the
latest
> version
> > > of met (met-5.1_bugfix.tar.gz).
> > >
> > > Thanks in advanced.
> > >
> > > Best regards,
> > > Diogo
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
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