[Met_help] [rt.rap.ucar.edu #71690] History for Error while installing MET-5.0
John Halley Gotway via RT
met_help at ucar.edu
Mon May 4 10:30:32 MDT 2015
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hi,
I am having trouble of installing MET-5.0, as in the attached log files.
Kindly advise.
Thanks,
Endalk
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Error while installing MET-5.0
From: John Halley Gotway
Time: Thu Apr 30 09:52:31 2015
Endalk,
I see that you're having trouble compiling MET version 5.0. Thanks
for
sending the make_install.log and config.log files. That helps a lot.
Looking in make_install.log, the error I'm seeing is pretty odd. MET
successfully compiles and builds the vx_cal and vx_math libraries, but
then
errors out when building the vx_util library. It exits when trying to
build the library archive file for vx_util saying that one of the
object
files doesn't exist. That's very odd because that object file was
successfully created a few lines above.
If you haven't already tried this, I'd suggest restarting from
scratch.
Perhaps something got corrupted along the way.
Please try the following:
cd /home/admasu/met
rm -rf met-5.0
tar -xvzf met-5.0.20140905.tar.gz
cd met-5.0
./configure --prefix=/home/admasu/met/met-5.0
make install >& make_install.log
Let me know how that goes. Notice that I've omitted the
"--enable-mode_graphics" option for now. Let's try to get a clean
build
first and then you can rebuild and add that back in. But it does
require a
handful of other dependencies.
Please let me know how this goes.
Thanks,
John Halley Gotway
met_help at ucar.edu
On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via RT <
met_help at ucar.edu> wrote:
>
> Wed Apr 29 12:25:51 2015: Request 71690 was acted upon.
> Transaction: Ticket created by endalkachew.bekele at noaa.gov
> Queue: met_help
> Subject: Error while installing MET-5.0
> Owner: Nobody
> Requestors: endalkachew.bekele at noaa.gov
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
>
>
> Hi,
>
> I am having trouble of installing MET-5.0, as in the attached log
files.
> Kindly advise.
>
> Thanks,
> Endalk
>
>
------------------------------------------------
Subject: Error while installing MET-5.0
From: Endalkachew Bekele
Time: Thu Apr 30 10:17:21 2015
Hi John,
Thanks for your help. I did follow your suggestion, but got similar
error
message, please see the attached log files.
Thanks again,
Endalk
On Thu, Apr 30, 2015 at 11:52 AM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Endalk,
>
> I see that you're having trouble compiling MET version 5.0. Thanks
for
> sending the make_install.log and config.log files. That helps a
lot.
>
> Looking in make_install.log, the error I'm seeing is pretty odd.
MET
> successfully compiles and builds the vx_cal and vx_math libraries,
but then
> errors out when building the vx_util library. It exits when trying
to
> build the library archive file for vx_util saying that one of the
object
> files doesn't exist. That's very odd because that object file was
> successfully created a few lines above.
>
> If you haven't already tried this, I'd suggest restarting from
scratch.
> Perhaps something got corrupted along the way.
>
> Please try the following:
> cd /home/admasu/met
> rm -rf met-5.0
> tar -xvzf met-5.0.20140905.tar.gz
> cd met-5.0
> ./configure --prefix=/home/admasu/met/met-5.0
> make install >& make_install.log
>
> Let me know how that goes. Notice that I've omitted the
> "--enable-mode_graphics" option for now. Let's try to get a clean
build
> first and then you can rebuild and add that back in. But it does
require a
> handful of other dependencies.
>
> Please let me know how this goes.
>
> Thanks,
> John Halley Gotway
> met_help at ucar.edu
>
> On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via RT <
> met_help at ucar.edu> wrote:
>
> >
> > Wed Apr 29 12:25:51 2015: Request 71690 was acted upon.
> > Transaction: Ticket created by endalkachew.bekele at noaa.gov
> > Queue: met_help
> > Subject: Error while installing MET-5.0
> > Owner: Nobody
> > Requestors: endalkachew.bekele at noaa.gov
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> >
> >
> > Hi,
> >
> > I am having trouble of installing MET-5.0, as in the attached log
files.
> > Kindly advise.
> >
> > Thanks,
> > Endalk
> >
> >
>
>
--
-----------------------------------------------------------------------------------
*Endalkachew Bekele*
CPC International Desks
NOAA Center for Weather and Climate Prediction
5830 University Research Court, Rm 3149
College Park, Maryland 20740
Tel: (301) 683-3459
e-mail: endalkachew.bekele at noaa.gov
UCAR/Joint Office for Science Support (JOSS)
e-mail: ebekele at ucar.edu
------------------------------------------------
Subject: Error while installing MET-5.0
From: John Halley Gotway
Time: Thu Apr 30 12:07:30 2015
Endalk,
Very different error message this time:
nc_var_info.h:24:21: fatal error: netcdf.hh: No such file or
directory^M
#include <netcdf.hh>
The compiler can't find the NetCDF header files it needs. MET needs
to be
compiled using a version of NetCDF that compiled using the same
compilers
you're using for MET, which are the GNU compilers. If NetCDF is
already
built on your system in this way, just set:
setenv MET_NETCDF /path/to/netcdf/dir
Where "/path/to/netcdf/dir" contains "include" and "lib"
subdirectories.
You'll also need the GNU Scientific Library (GSL) and BUFRLIB.
I'd suggest following the compilation instructions posted here:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
Hope that helps get you going in the right direction. Can you tell
me, on
what machine are you trying to compile MET? It's already installed on
a
handful of machines at NOAA: jet and zeus (which is now theia I
believe).
If you're using one of those, I could point you to it.
Thanks,
John
On Thu, Apr 30, 2015 at 10:17 AM, Endalkachew Bekele via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
>
> Hi John,
> Thanks for your help. I did follow your suggestion, but got similar
error
> message, please see the attached log files.
> Thanks again,
> Endalk
>
> On Thu, Apr 30, 2015 at 11:52 AM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Endalk,
> >
> > I see that you're having trouble compiling MET version 5.0.
Thanks for
> > sending the make_install.log and config.log files. That helps a
lot.
> >
> > Looking in make_install.log, the error I'm seeing is pretty odd.
MET
> > successfully compiles and builds the vx_cal and vx_math libraries,
but
> then
> > errors out when building the vx_util library. It exits when
trying to
> > build the library archive file for vx_util saying that one of the
object
> > files doesn't exist. That's very odd because that object file was
> > successfully created a few lines above.
> >
> > If you haven't already tried this, I'd suggest restarting from
scratch.
> > Perhaps something got corrupted along the way.
> >
> > Please try the following:
> > cd /home/admasu/met
> > rm -rf met-5.0
> > tar -xvzf met-5.0.20140905.tar.gz
> > cd met-5.0
> > ./configure --prefix=/home/admasu/met/met-5.0
> > make install >& make_install.log
> >
> > Let me know how that goes. Notice that I've omitted the
> > "--enable-mode_graphics" option for now. Let's try to get a clean
build
> > first and then you can rebuild and add that back in. But it does
> require a
> > handful of other dependencies.
> >
> > Please let me know how this goes.
> >
> > Thanks,
> > John Halley Gotway
> > met_help at ucar.edu
> >
> > On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > Wed Apr 29 12:25:51 2015: Request 71690 was acted upon.
> > > Transaction: Ticket created by endalkachew.bekele at noaa.gov
> > > Queue: met_help
> > > Subject: Error while installing MET-5.0
> > > Owner: Nobody
> > > Requestors: endalkachew.bekele at noaa.gov
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
> >
> > >
> > >
> > > Hi,
> > >
> > > I am having trouble of installing MET-5.0, as in the attached
log
> files.
> > > Kindly advise.
> > >
> > > Thanks,
> > > Endalk
> > >
> > >
> >
> >
>
>
> --
>
>
-----------------------------------------------------------------------------------
> *Endalkachew Bekele*
> CPC International Desks
> NOAA Center for Weather and Climate Prediction
> 5830 University Research Court, Rm 3149
> College Park, Maryland 20740
> Tel: (301) 683-3459
> e-mail: endalkachew.bekele at noaa.gov
>
> UCAR/Joint Office for Science Support (JOSS)
> e-mail: ebekele at ucar.edu
>
>
------------------------------------------------
Subject: Error while installing MET-5.0
From: Endalkachew Bekele
Time: Fri May 01 09:16:10 2015
Hi John,
Thanks again.
I have made the necessary environment, but I still receive error
messages
as in the attached log files.
Endalk
On Thu, Apr 30, 2015 at 2:07 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Endalk,
>
> Very different error message this time:
>
> nc_var_info.h:24:21: fatal error: netcdf.hh: No such file or
directory^M
> #include <netcdf.hh>
>
> The compiler can't find the NetCDF header files it needs. MET needs
to be
> compiled using a version of NetCDF that compiled using the same
compilers
> you're using for MET, which are the GNU compilers. If NetCDF is
already
> built on your system in this way, just set:
> setenv MET_NETCDF /path/to/netcdf/dir
>
> Where "/path/to/netcdf/dir" contains "include" and "lib"
subdirectories.
> You'll also need the GNU Scientific Library (GSL) and BUFRLIB.
>
> I'd suggest following the compilation instructions posted here:
>
>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>
> Hope that helps get you going in the right direction. Can you tell
me, on
> what machine are you trying to compile MET? It's already installed
on a
> handful of machines at NOAA: jet and zeus (which is now theia I
believe).
> If you're using one of those, I could point you to it.
>
> Thanks,
> John
>
>
>
> On Thu, Apr 30, 2015 at 10:17 AM, Endalkachew Bekele via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> >
> > Hi John,
> > Thanks for your help. I did follow your suggestion, but got
similar error
> > message, please see the attached log files.
> > Thanks again,
> > Endalk
> >
> > On Thu, Apr 30, 2015 at 11:52 AM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Endalk,
> > >
> > > I see that you're having trouble compiling MET version 5.0.
Thanks for
> > > sending the make_install.log and config.log files. That helps a
lot.
> > >
> > > Looking in make_install.log, the error I'm seeing is pretty odd.
MET
> > > successfully compiles and builds the vx_cal and vx_math
libraries, but
> > then
> > > errors out when building the vx_util library. It exits when
trying to
> > > build the library archive file for vx_util saying that one of
the
> object
> > > files doesn't exist. That's very odd because that object file
was
> > > successfully created a few lines above.
> > >
> > > If you haven't already tried this, I'd suggest restarting from
scratch.
> > > Perhaps something got corrupted along the way.
> > >
> > > Please try the following:
> > > cd /home/admasu/met
> > > rm -rf met-5.0
> > > tar -xvzf met-5.0.20140905.tar.gz
> > > cd met-5.0
> > > ./configure --prefix=/home/admasu/met/met-5.0
> > > make install >& make_install.log
> > >
> > > Let me know how that goes. Notice that I've omitted the
> > > "--enable-mode_graphics" option for now. Let's try to get a
clean
> build
> > > first and then you can rebuild and add that back in. But it
does
> > require a
> > > handful of other dependencies.
> > >
> > > Please let me know how this goes.
> > >
> > > Thanks,
> > > John Halley Gotway
> > > met_help at ucar.edu
> > >
> > > On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > Wed Apr 29 12:25:51 2015: Request 71690 was acted upon.
> > > > Transaction: Ticket created by endalkachew.bekele at noaa.gov
> > > > Queue: met_help
> > > > Subject: Error while installing MET-5.0
> > > > Owner: Nobody
> > > > Requestors: endalkachew.bekele at noaa.gov
> > > > Status: new
> > > > Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
> > >
> > > >
> > > >
> > > > Hi,
> > > >
> > > > I am having trouble of installing MET-5.0, as in the attached
log
> > files.
> > > > Kindly advise.
> > > >
> > > > Thanks,
> > > > Endalk
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> >
> >
>
-----------------------------------------------------------------------------------
> > *Endalkachew Bekele*
> > CPC International Desks
> > NOAA Center for Weather and Climate Prediction
> > 5830 University Research Court, Rm 3149
> > College Park, Maryland 20740
> > Tel: (301) 683-3459
> > e-mail: endalkachew.bekele at noaa.gov
> >
> > UCAR/Joint Office for Science Support (JOSS)
> > e-mail: ebekele at ucar.edu
> >
> >
>
>
--
-----------------------------------------------------------------------------------
*Endalkachew Bekele*
CPC International Desks
NOAA Center for Weather and Climate Prediction
5830 University Research Court, Rm 3149
College Park, Maryland 20740
Tel: (301) 683-3459
e-mail: endalkachew.bekele at noaa.gov
UCAR/Joint Office for Science Support (JOSS)
e-mail: ebekele at ucar.edu
------------------------------------------------
Subject: Error while installing MET-5.0
From: John Halley Gotway
Time: Fri May 01 09:31:24 2015
Endalk,
OK, the error we're getting now is that it can't find "yacc". The
tools
lex and yacc (or flex and bison) are common utilities on Linux systems
used
for scanning and parsing files. We use them when reading the
configuration
files for the tools. This is the first time I've seen this error from
a
user... that's why it's not currently included in the tutorial. It
just
hasn't come up in the past.
You could attempt to locate "yacc" or "bison" on your machine.
Perhaps
it's somewhere but just isn't in your path. If you find it, you could
either add the directory for that executable to your path. Or you
could
set the "YACC" environment variable pointing to the yacc or bison
executable (e.g. setenv YACC /path/to/bison). Then rerun configure.
Looks like we're making progress each time, but this is slow going!
Sorry
for that.
John
On Fri, May 1, 2015 at 9:16 AM, Endalkachew Bekele via RT
<met_help at ucar.edu
> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
>
> Hi John,
> Thanks again.
> I have made the necessary environment, but I still receive error
messages
> as in the attached log files.
> Endalk
>
> On Thu, Apr 30, 2015 at 2:07 PM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Endalk,
> >
> > Very different error message this time:
> >
> > nc_var_info.h:24:21: fatal error: netcdf.hh: No such file or
directory^M
> > #include <netcdf.hh>
> >
> > The compiler can't find the NetCDF header files it needs. MET
needs to
> be
> > compiled using a version of NetCDF that compiled using the same
compilers
> > you're using for MET, which are the GNU compilers. If NetCDF is
already
> > built on your system in this way, just set:
> > setenv MET_NETCDF /path/to/netcdf/dir
> >
> > Where "/path/to/netcdf/dir" contains "include" and "lib"
subdirectories.
> > You'll also need the GNU Scientific Library (GSL) and BUFRLIB.
> >
> > I'd suggest following the compilation instructions posted here:
> >
> >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >
> > Hope that helps get you going in the right direction. Can you
tell me,
> on
> > what machine are you trying to compile MET? It's already
installed on a
> > handful of machines at NOAA: jet and zeus (which is now theia I
believe).
> > If you're using one of those, I could point you to it.
> >
> > Thanks,
> > John
> >
> >
> >
> > On Thu, Apr 30, 2015 at 10:17 AM, Endalkachew Bekele via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> > >
> > > Hi John,
> > > Thanks for your help. I did follow your suggestion, but got
similar
> error
> > > message, please see the attached log files.
> > > Thanks again,
> > > Endalk
> > >
> > > On Thu, Apr 30, 2015 at 11:52 AM, John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Endalk,
> > > >
> > > > I see that you're having trouble compiling MET version 5.0.
Thanks
> for
> > > > sending the make_install.log and config.log files. That helps
a lot.
> > > >
> > > > Looking in make_install.log, the error I'm seeing is pretty
odd. MET
> > > > successfully compiles and builds the vx_cal and vx_math
libraries,
> but
> > > then
> > > > errors out when building the vx_util library. It exits when
trying
> to
> > > > build the library archive file for vx_util saying that one of
the
> > object
> > > > files doesn't exist. That's very odd because that object file
was
> > > > successfully created a few lines above.
> > > >
> > > > If you haven't already tried this, I'd suggest restarting from
> scratch.
> > > > Perhaps something got corrupted along the way.
> > > >
> > > > Please try the following:
> > > > cd /home/admasu/met
> > > > rm -rf met-5.0
> > > > tar -xvzf met-5.0.20140905.tar.gz
> > > > cd met-5.0
> > > > ./configure --prefix=/home/admasu/met/met-5.0
> > > > make install >& make_install.log
> > > >
> > > > Let me know how that goes. Notice that I've omitted the
> > > > "--enable-mode_graphics" option for now. Let's try to get a
clean
> > build
> > > > first and then you can rebuild and add that back in. But it
does
> > > require a
> > > > handful of other dependencies.
> > > >
> > > > Please let me know how this goes.
> > > >
> > > > Thanks,
> > > > John Halley Gotway
> > > > met_help at ucar.edu
> > > >
> > > > On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > Wed Apr 29 12:25:51 2015: Request 71690 was acted upon.
> > > > > Transaction: Ticket created by endalkachew.bekele at noaa.gov
> > > > > Queue: met_help
> > > > > Subject: Error while installing MET-5.0
> > > > > Owner: Nobody
> > > > > Requestors: endalkachew.bekele at noaa.gov
> > > > > Status: new
> > > > > Ticket <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
> > > >
> > > > >
> > > > >
> > > > > Hi,
> > > > >
> > > > > I am having trouble of installing MET-5.0, as in the
attached log
> > > files.
> > > > > Kindly advise.
> > > > >
> > > > > Thanks,
> > > > > Endalk
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > >
> > >
> >
>
-----------------------------------------------------------------------------------
> > > *Endalkachew Bekele*
> > > CPC International Desks
> > > NOAA Center for Weather and Climate Prediction
> > > 5830 University Research Court, Rm 3149
> > > College Park, Maryland 20740
> > > Tel: (301) 683-3459
> > > e-mail: endalkachew.bekele at noaa.gov
> > >
> > > UCAR/Joint Office for Science Support (JOSS)
> > > e-mail: ebekele at ucar.edu
> > >
> > >
> >
> >
>
>
> --
>
>
-----------------------------------------------------------------------------------
> *Endalkachew Bekele*
> CPC International Desks
> NOAA Center for Weather and Climate Prediction
> 5830 University Research Court, Rm 3149
> College Park, Maryland 20740
> Tel: (301) 683-3459
> e-mail: endalkachew.bekele at noaa.gov
>
> UCAR/Joint Office for Science Support (JOSS)
> e-mail: ebekele at ucar.edu
>
>
------------------------------------------------
Subject: Error while installing MET-5.0
From: Endalkachew Bekele
Time: Fri May 01 09:56:42 2015
Hi John,
I did install bison, and set the environment accordingly. But I still
receive similar error message (see log files).
On Fri, May 1, 2015 at 11:31 AM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Endalk,
>
> OK, the error we're getting now is that it can't find "yacc". The
tools
> lex and yacc (or flex and bison) are common utilities on Linux
systems used
> for scanning and parsing files. We use them when reading the
configuration
> files for the tools. This is the first time I've seen this error
from a
> user... that's why it's not currently included in the tutorial. It
just
> hasn't come up in the past.
>
> You could attempt to locate "yacc" or "bison" on your machine.
Perhaps
> it's somewhere but just isn't in your path. If you find it, you
could
> either add the directory for that executable to your path. Or you
could
> set the "YACC" environment variable pointing to the yacc or bison
> executable (e.g. setenv YACC /path/to/bison). Then rerun configure.
>
> Looks like we're making progress each time, but this is slow going!
Sorry
> for that.
>
> John
>
> On Fri, May 1, 2015 at 9:16 AM, Endalkachew Bekele via RT <
> met_help at ucar.edu
> > wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> >
> > Hi John,
> > Thanks again.
> > I have made the necessary environment, but I still receive error
messages
> > as in the attached log files.
> > Endalk
> >
> > On Thu, Apr 30, 2015 at 2:07 PM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Endalk,
> > >
> > > Very different error message this time:
> > >
> > > nc_var_info.h:24:21: fatal error: netcdf.hh: No such file or
> directory^M
> > > #include <netcdf.hh>
> > >
> > > The compiler can't find the NetCDF header files it needs. MET
needs to
> > be
> > > compiled using a version of NetCDF that compiled using the same
> compilers
> > > you're using for MET, which are the GNU compilers. If NetCDF is
> already
> > > built on your system in this way, just set:
> > > setenv MET_NETCDF /path/to/netcdf/dir
> > >
> > > Where "/path/to/netcdf/dir" contains "include" and "lib"
> subdirectories.
> > > You'll also need the GNU Scientific Library (GSL) and BUFRLIB.
> > >
> > > I'd suggest following the compilation instructions posted here:
> > >
> > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > >
> > > Hope that helps get you going in the right direction. Can you
tell
> me,
> > on
> > > what machine are you trying to compile MET? It's already
installed on
> a
> > > handful of machines at NOAA: jet and zeus (which is now theia I
> believe).
> > > If you're using one of those, I could point you to it.
> > >
> > > Thanks,
> > > John
> > >
> > >
> > >
> > > On Thu, Apr 30, 2015 at 10:17 AM, Endalkachew Bekele via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
>
> > > >
> > > > Hi John,
> > > > Thanks for your help. I did follow your suggestion, but got
similar
> > error
> > > > message, please see the attached log files.
> > > > Thanks again,
> > > > Endalk
> > > >
> > > > On Thu, Apr 30, 2015 at 11:52 AM, John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Endalk,
> > > > >
> > > > > I see that you're having trouble compiling MET version 5.0.
Thanks
> > for
> > > > > sending the make_install.log and config.log files. That
helps a
> lot.
> > > > >
> > > > > Looking in make_install.log, the error I'm seeing is pretty
odd.
> MET
> > > > > successfully compiles and builds the vx_cal and vx_math
libraries,
> > but
> > > > then
> > > > > errors out when building the vx_util library. It exits when
trying
> > to
> > > > > build the library archive file for vx_util saying that one
of the
> > > object
> > > > > files doesn't exist. That's very odd because that object
file was
> > > > > successfully created a few lines above.
> > > > >
> > > > > If you haven't already tried this, I'd suggest restarting
from
> > scratch.
> > > > > Perhaps something got corrupted along the way.
> > > > >
> > > > > Please try the following:
> > > > > cd /home/admasu/met
> > > > > rm -rf met-5.0
> > > > > tar -xvzf met-5.0.20140905.tar.gz
> > > > > cd met-5.0
> > > > > ./configure --prefix=/home/admasu/met/met-5.0
> > > > > make install >& make_install.log
> > > > >
> > > > > Let me know how that goes. Notice that I've omitted the
> > > > > "--enable-mode_graphics" option for now. Let's try to get a
clean
> > > build
> > > > > first and then you can rebuild and add that back in. But it
does
> > > > require a
> > > > > handful of other dependencies.
> > > > >
> > > > > Please let me know how this goes.
> > > > >
> > > > > Thanks,
> > > > > John Halley Gotway
> > > > > met_help at ucar.edu
> > > > >
> > > > > On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via RT
<
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > Wed Apr 29 12:25:51 2015: Request 71690 was acted upon.
> > > > > > Transaction: Ticket created by endalkachew.bekele at noaa.gov
> > > > > > Queue: met_help
> > > > > > Subject: Error while installing MET-5.0
> > > > > > Owner: Nobody
> > > > > > Requestors: endalkachew.bekele at noaa.gov
> > > > > > Status: new
> > > > > > Ticket <URL:
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
> > > > >
> > > > > >
> > > > > >
> > > > > > Hi,
> > > > > >
> > > > > > I am having trouble of installing MET-5.0, as in the
attached log
> > > > files.
> > > > > > Kindly advise.
> > > > > >
> > > > > > Thanks,
> > > > > > Endalk
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > >
> > > >
> > >
> >
>
-----------------------------------------------------------------------------------
> > > > *Endalkachew Bekele*
> > > > CPC International Desks
> > > > NOAA Center for Weather and Climate Prediction
> > > > 5830 University Research Court, Rm 3149
> > > > College Park, Maryland 20740
> > > > Tel: (301) 683-3459
> > > > e-mail: endalkachew.bekele at noaa.gov
> > > >
> > > > UCAR/Joint Office for Science Support (JOSS)
> > > > e-mail: ebekele at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> >
> >
>
-----------------------------------------------------------------------------------
> > *Endalkachew Bekele*
> > CPC International Desks
> > NOAA Center for Weather and Climate Prediction
> > 5830 University Research Court, Rm 3149
> > College Park, Maryland 20740
> > Tel: (301) 683-3459
> > e-mail: endalkachew.bekele at noaa.gov
> >
> > UCAR/Joint Office for Science Support (JOSS)
> > e-mail: ebekele at ucar.edu
> >
> >
>
>
--
-----------------------------------------------------------------------------------
*Endalkachew Bekele*
CPC International Desks
NOAA Center for Weather and Climate Prediction
5830 University Research Court, Rm 3149
College Park, Maryland 20740
Tel: (301) 683-3459
e-mail: endalkachew.bekele at noaa.gov
UCAR/Joint Office for Science Support (JOSS)
e-mail: ebekele at ucar.edu
------------------------------------------------
Subject: Error while installing MET-5.0
From: John Halley Gotway
Time: Fri May 01 13:32:06 2015
Looking in your config.log file, it looks like configure also needs
"flex". Typically flex and bison go hand in hand. Please try
installing
flex into /usr/bin. If flex and binson are in /usr/bin, the configure
command should find them and won't need to be told where they are. So
just
unset the YACC environment variable:
unsetenv YACC
Then try again.
This is actually a bit perplexing. I hadn't realized that lex/yacc or
flex/bison were required for compiling MET. They're required in our
development environment, but I didn't think they were required to
build the
released code. I'll need to look more into this. So thanks for
letting us
know about it.
Thanks,
John
On Fri, May 1, 2015 at 9:56 AM, Endalkachew Bekele via RT
<met_help at ucar.edu
> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
>
> Hi John,
> I did install bison, and set the environment accordingly. But I
still
> receive similar error message (see log files).
>
> On Fri, May 1, 2015 at 11:31 AM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Endalk,
> >
> > OK, the error we're getting now is that it can't find "yacc". The
tools
> > lex and yacc (or flex and bison) are common utilities on Linux
systems
> used
> > for scanning and parsing files. We use them when reading the
> configuration
> > files for the tools. This is the first time I've seen this error
from a
> > user... that's why it's not currently included in the tutorial.
It just
> > hasn't come up in the past.
> >
> > You could attempt to locate "yacc" or "bison" on your machine.
Perhaps
> > it's somewhere but just isn't in your path. If you find it, you
could
> > either add the directory for that executable to your path. Or you
could
> > set the "YACC" environment variable pointing to the yacc or bison
> > executable (e.g. setenv YACC /path/to/bison). Then rerun
configure.
> >
> > Looks like we're making progress each time, but this is slow
going!
> Sorry
> > for that.
> >
> > John
> >
> > On Fri, May 1, 2015 at 9:16 AM, Endalkachew Bekele via RT <
> > met_help at ucar.edu
> > > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> > >
> > > Hi John,
> > > Thanks again.
> > > I have made the necessary environment, but I still receive error
> messages
> > > as in the attached log files.
> > > Endalk
> > >
> > > On Thu, Apr 30, 2015 at 2:07 PM, John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Endalk,
> > > >
> > > > Very different error message this time:
> > > >
> > > > nc_var_info.h:24:21: fatal error: netcdf.hh: No such file or
> > directory^M
> > > > #include <netcdf.hh>
> > > >
> > > > The compiler can't find the NetCDF header files it needs. MET
needs
> to
> > > be
> > > > compiled using a version of NetCDF that compiled using the
same
> > compilers
> > > > you're using for MET, which are the GNU compilers. If NetCDF
is
> > already
> > > > built on your system in this way, just set:
> > > > setenv MET_NETCDF /path/to/netcdf/dir
> > > >
> > > > Where "/path/to/netcdf/dir" contains "include" and "lib"
> > subdirectories.
> > > > You'll also need the GNU Scientific Library (GSL) and BUFRLIB.
> > > >
> > > > I'd suggest following the compilation instructions posted
here:
> > > >
> > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > >
> > > > Hope that helps get you going in the right direction. Can
you tell
> > me,
> > > on
> > > > what machine are you trying to compile MET? It's already
installed
> on
> > a
> > > > handful of machines at NOAA: jet and zeus (which is now theia
I
> > believe).
> > > > If you're using one of those, I could point you to it.
> > > >
> > > > Thanks,
> > > > John
> > > >
> > > >
> > > >
> > > > On Thu, Apr 30, 2015 at 10:17 AM, Endalkachew Bekele via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> > > > >
> > > > > Hi John,
> > > > > Thanks for your help. I did follow your suggestion, but got
similar
> > > error
> > > > > message, please see the attached log files.
> > > > > Thanks again,
> > > > > Endalk
> > > > >
> > > > > On Thu, Apr 30, 2015 at 11:52 AM, John Halley Gotway via RT
<
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > > Endalk,
> > > > > >
> > > > > > I see that you're having trouble compiling MET version
5.0.
> Thanks
> > > for
> > > > > > sending the make_install.log and config.log files. That
helps a
> > lot.
> > > > > >
> > > > > > Looking in make_install.log, the error I'm seeing is
pretty odd.
> > MET
> > > > > > successfully compiles and builds the vx_cal and vx_math
> libraries,
> > > but
> > > > > then
> > > > > > errors out when building the vx_util library. It exits
when
> trying
> > > to
> > > > > > build the library archive file for vx_util saying that one
of the
> > > > object
> > > > > > files doesn't exist. That's very odd because that object
file
> was
> > > > > > successfully created a few lines above.
> > > > > >
> > > > > > If you haven't already tried this, I'd suggest restarting
from
> > > scratch.
> > > > > > Perhaps something got corrupted along the way.
> > > > > >
> > > > > > Please try the following:
> > > > > > cd /home/admasu/met
> > > > > > rm -rf met-5.0
> > > > > > tar -xvzf met-5.0.20140905.tar.gz
> > > > > > cd met-5.0
> > > > > > ./configure --prefix=/home/admasu/met/met-5.0
> > > > > > make install >& make_install.log
> > > > > >
> > > > > > Let me know how that goes. Notice that I've omitted the
> > > > > > "--enable-mode_graphics" option for now. Let's try to get
a
> clean
> > > > build
> > > > > > first and then you can rebuild and add that back in. But
it does
> > > > > require a
> > > > > > handful of other dependencies.
> > > > > >
> > > > > > Please let me know how this goes.
> > > > > >
> > > > > > Thanks,
> > > > > > John Halley Gotway
> > > > > > met_help at ucar.edu
> > > > > >
> > > > > > On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via
RT <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > Wed Apr 29 12:25:51 2015: Request 71690 was acted upon.
> > > > > > > Transaction: Ticket created by
endalkachew.bekele at noaa.gov
> > > > > > > Queue: met_help
> > > > > > > Subject: Error while installing MET-5.0
> > > > > > > Owner: Nobody
> > > > > > > Requestors: endalkachew.bekele at noaa.gov
> > > > > > > Status: new
> > > > > > > Ticket <URL:
> > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
> > > > > >
> > > > > > >
> > > > > > >
> > > > > > > Hi,
> > > > > > >
> > > > > > > I am having trouble of installing MET-5.0, as in the
attached
> log
> > > > > files.
> > > > > > > Kindly advise.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Endalk
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > >
> > > > >
> > > >
> > >
> >
>
-----------------------------------------------------------------------------------
> > > > > *Endalkachew Bekele*
> > > > > CPC International Desks
> > > > > NOAA Center for Weather and Climate Prediction
> > > > > 5830 University Research Court, Rm 3149
> > > > > College Park, Maryland 20740
> > > > > Tel: (301) 683-3459
> > > > > e-mail: endalkachew.bekele at noaa.gov
> > > > >
> > > > > UCAR/Joint Office for Science Support (JOSS)
> > > > > e-mail: ebekele at ucar.edu
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > >
> > >
> >
>
-----------------------------------------------------------------------------------
> > > *Endalkachew Bekele*
> > > CPC International Desks
> > > NOAA Center for Weather and Climate Prediction
> > > 5830 University Research Court, Rm 3149
> > > College Park, Maryland 20740
> > > Tel: (301) 683-3459
> > > e-mail: endalkachew.bekele at noaa.gov
> > >
> > > UCAR/Joint Office for Science Support (JOSS)
> > > e-mail: ebekele at ucar.edu
> > >
> > >
> >
> >
>
>
> --
>
>
-----------------------------------------------------------------------------------
> *Endalkachew Bekele*
> CPC International Desks
> NOAA Center for Weather and Climate Prediction
> 5830 University Research Court, Rm 3149
> College Park, Maryland 20740
> Tel: (301) 683-3459
> e-mail: endalkachew.bekele at noaa.gov
>
> UCAR/Joint Office for Science Support (JOSS)
> e-mail: ebekele at ucar.edu
>
>
------------------------------------------------
Subject: Error while installing MET-5.0
From: Endalkachew Bekele
Time: Mon May 04 10:22:15 2015
Hi John,
Installing flex has resolved the problem. Thank you so much!
Endalk
On Fri, May 1, 2015 at 3:32 PM, John Halley Gotway via RT
<met_help at ucar.edu
> wrote:
> Looking in your config.log file, it looks like configure also needs
> "flex". Typically flex and bison go hand in hand. Please try
installing
> flex into /usr/bin. If flex and binson are in /usr/bin, the
configure
> command should find them and won't need to be told where they are.
So just
> unset the YACC environment variable:
> unsetenv YACC
>
> Then try again.
>
> This is actually a bit perplexing. I hadn't realized that lex/yacc
or
> flex/bison were required for compiling MET. They're required in our
> development environment, but I didn't think they were required to
build the
> released code. I'll need to look more into this. So thanks for
letting us
> know about it.
>
> Thanks,
> John
>
> On Fri, May 1, 2015 at 9:56 AM, Endalkachew Bekele via RT <
> met_help at ucar.edu
> > wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> >
> > Hi John,
> > I did install bison, and set the environment accordingly. But I
still
> > receive similar error message (see log files).
> >
> > On Fri, May 1, 2015 at 11:31 AM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Endalk,
> > >
> > > OK, the error we're getting now is that it can't find "yacc".
The
> tools
> > > lex and yacc (or flex and bison) are common utilities on Linux
systems
> > used
> > > for scanning and parsing files. We use them when reading the
> > configuration
> > > files for the tools. This is the first time I've seen this
error from
> a
> > > user... that's why it's not currently included in the tutorial.
It
> just
> > > hasn't come up in the past.
> > >
> > > You could attempt to locate "yacc" or "bison" on your machine.
Perhaps
> > > it's somewhere but just isn't in your path. If you find it, you
could
> > > either add the directory for that executable to your path. Or
you
> could
> > > set the "YACC" environment variable pointing to the yacc or
bison
> > > executable (e.g. setenv YACC /path/to/bison). Then rerun
configure.
> > >
> > > Looks like we're making progress each time, but this is slow
going!
> > Sorry
> > > for that.
> > >
> > > John
> > >
> > > On Fri, May 1, 2015 at 9:16 AM, Endalkachew Bekele via RT <
> > > met_help at ucar.edu
> > > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
>
> > > >
> > > > Hi John,
> > > > Thanks again.
> > > > I have made the necessary environment, but I still receive
error
> > messages
> > > > as in the attached log files.
> > > > Endalk
> > > >
> > > > On Thu, Apr 30, 2015 at 2:07 PM, John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Endalk,
> > > > >
> > > > > Very different error message this time:
> > > > >
> > > > > nc_var_info.h:24:21: fatal error: netcdf.hh: No such file or
> > > directory^M
> > > > > #include <netcdf.hh>
> > > > >
> > > > > The compiler can't find the NetCDF header files it needs.
MET
> needs
> > to
> > > > be
> > > > > compiled using a version of NetCDF that compiled using the
same
> > > compilers
> > > > > you're using for MET, which are the GNU compilers. If
NetCDF is
> > > already
> > > > > built on your system in this way, just set:
> > > > > setenv MET_NETCDF /path/to/netcdf/dir
> > > > >
> > > > > Where "/path/to/netcdf/dir" contains "include" and "lib"
> > > subdirectories.
> > > > > You'll also need the GNU Scientific Library (GSL) and
BUFRLIB.
> > > > >
> > > > > I'd suggest following the compilation instructions posted
here:
> > > > >
> > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > >
> > > > > Hope that helps get you going in the right direction. Can
you
> tell
> > > me,
> > > > on
> > > > > what machine are you trying to compile MET? It's already
installed
> > on
> > > a
> > > > > handful of machines at NOAA: jet and zeus (which is now
theia I
> > > believe).
> > > > > If you're using one of those, I could point you to it.
> > > > >
> > > > > Thanks,
> > > > > John
> > > > >
> > > > >
> > > > >
> > > > > On Thu, Apr 30, 2015 at 10:17 AM, Endalkachew Bekele via RT
<
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690 >
> > > > > >
> > > > > > Hi John,
> > > > > > Thanks for your help. I did follow your suggestion, but
got
> similar
> > > > error
> > > > > > message, please see the attached log files.
> > > > > > Thanks again,
> > > > > > Endalk
> > > > > >
> > > > > > On Thu, Apr 30, 2015 at 11:52 AM, John Halley Gotway via
RT <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > > Endalk,
> > > > > > >
> > > > > > > I see that you're having trouble compiling MET version
5.0.
> > Thanks
> > > > for
> > > > > > > sending the make_install.log and config.log files. That
helps
> a
> > > lot.
> > > > > > >
> > > > > > > Looking in make_install.log, the error I'm seeing is
pretty
> odd.
> > > MET
> > > > > > > successfully compiles and builds the vx_cal and vx_math
> > libraries,
> > > > but
> > > > > > then
> > > > > > > errors out when building the vx_util library. It exits
when
> > trying
> > > > to
> > > > > > > build the library archive file for vx_util saying that
one of
> the
> > > > > object
> > > > > > > files doesn't exist. That's very odd because that
object file
> > was
> > > > > > > successfully created a few lines above.
> > > > > > >
> > > > > > > If you haven't already tried this, I'd suggest
restarting from
> > > > scratch.
> > > > > > > Perhaps something got corrupted along the way.
> > > > > > >
> > > > > > > Please try the following:
> > > > > > > cd /home/admasu/met
> > > > > > > rm -rf met-5.0
> > > > > > > tar -xvzf met-5.0.20140905.tar.gz
> > > > > > > cd met-5.0
> > > > > > > ./configure --prefix=/home/admasu/met/met-5.0
> > > > > > > make install >& make_install.log
> > > > > > >
> > > > > > > Let me know how that goes. Notice that I've omitted the
> > > > > > > "--enable-mode_graphics" option for now. Let's try to
get a
> > clean
> > > > > build
> > > > > > > first and then you can rebuild and add that back in.
But it
> does
> > > > > > require a
> > > > > > > handful of other dependencies.
> > > > > > >
> > > > > > > Please let me know how this goes.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > John Halley Gotway
> > > > > > > met_help at ucar.edu
> > > > > > >
> > > > > > > On Wed, Apr 29, 2015 at 12:25 PM, Endalkachew Bekele via
RT <
> > > > > > > met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > Wed Apr 29 12:25:51 2015: Request 71690 was acted
upon.
> > > > > > > > Transaction: Ticket created by
endalkachew.bekele at noaa.gov
> > > > > > > > Queue: met_help
> > > > > > > > Subject: Error while installing MET-5.0
> > > > > > > > Owner: Nobody
> > > > > > > > Requestors: endalkachew.bekele at noaa.gov
> > > > > > > > Status: new
> > > > > > > > Ticket <URL:
> > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71690
> > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > Hi,
> > > > > > > >
> > > > > > > > I am having trouble of installing MET-5.0, as in the
attached
> > log
> > > > > > files.
> > > > > > > > Kindly advise.
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Endalk
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
-----------------------------------------------------------------------------------
> > > > > > *Endalkachew Bekele*
> > > > > > CPC International Desks
> > > > > > NOAA Center for Weather and Climate Prediction
> > > > > > 5830 University Research Court, Rm 3149
> > > > > > College Park, Maryland 20740
> > > > > > Tel: (301) 683-3459
> > > > > > e-mail: endalkachew.bekele at noaa.gov
> > > > > >
> > > > > > UCAR/Joint Office for Science Support (JOSS)
> > > > > > e-mail: ebekele at ucar.edu
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > >
> > > >
> > >
> >
>
-----------------------------------------------------------------------------------
> > > > *Endalkachew Bekele*
> > > > CPC International Desks
> > > > NOAA Center for Weather and Climate Prediction
> > > > 5830 University Research Court, Rm 3149
> > > > College Park, Maryland 20740
> > > > Tel: (301) 683-3459
> > > > e-mail: endalkachew.bekele at noaa.gov
> > > >
> > > > UCAR/Joint Office for Science Support (JOSS)
> > > > e-mail: ebekele at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> >
> >
>
-----------------------------------------------------------------------------------
> > *Endalkachew Bekele*
> > CPC International Desks
> > NOAA Center for Weather and Climate Prediction
> > 5830 University Research Court, Rm 3149
> > College Park, Maryland 20740
> > Tel: (301) 683-3459
> > e-mail: endalkachew.bekele at noaa.gov
> >
> > UCAR/Joint Office for Science Support (JOSS)
> > e-mail: ebekele at ucar.edu
> >
> >
>
>
--
-----------------------------------------------------------------------------------
*Endalkachew Bekele*
CPC International Desks
NOAA Center for Weather and Climate Prediction
5830 University Research Court, Rm 3149
College Park, Maryland 20740
Tel: (301) 683-3459
e-mail: endalkachew.bekele at noaa.gov
UCAR/Joint Office for Science Support (JOSS)
e-mail: ebekele at ucar.edu
------------------------------------------------
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