[Met_help] [rt.rap.ucar.edu #71486] History for Run MET verification tool
Julie Prestopnik via RT
met_help at ucar.edu
Fri May 1 13:55:12 MDT 2015
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Dear MET developers:
We are scientists from ASRC SUNY, who are trying to use your MET tool to evaluate our model results.
Here is a problem we want to consult. After we successfully compiled the MET exec, when run the make test, here comes the following messages for all exec:
*** Running Gen-Poly-Mask to generate a polyline mask file for the Continental United States ***
gen_poly_mask: error while loading shared libraries: /opt/pgi/linux86-64/14.2/libso/libpgftnrtl.so: cannot restore segment prot after reloc: Permission denied
Can this problem be solved by different compile option (right now we use gcc, pgf90, gfortran etc.)? Or it is the system setup issue? Or any experience before?
Please let us know if there is any suggestion, thank you.
Cheers,
Sheng-Po Chen
===================================
Sheng-Po Chen, Ph. D.
Research Scientist
Atmospheric Sciences Research Center
State University of New York at Albany
Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
===================================
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Run MET verification tool
From: Julie Prestopnik
Time: Fri Apr 17 14:15:04 2015
Hello. I am sorry to hear that you are experiencing problems with
make
test. This is a system configuration issue. I noticed that you said
"right now we use gcc, pgf90, gfortran etc." It is important to
ensure
that all of the supporting libraries for MET and MET be built using
the
same family of compilers. So, you should use g++ and gfortran OR pgcc
and
pgf90. Can you please verify that all of the supporting libraries for
MET
and MET were built using the same family of compilers? If they were
not,
please try rebuilding them and let us know if you run into any
problems.
If they were, please send me the config.log and make_install.log
files.
Thank you,
Julie
On Fri, Apr 17, 2015 at 12:22 PM, ASRC via RT <met_help at ucar.edu>
wrote:
>
> Fri Apr 17 12:22:10 2015: Request 71486 was acted upon.
> Transaction: Ticket created by schen21 at albany.edu
> Queue: met_help
> Subject: Run MET verification tool
> Owner: Nobody
> Requestors: schen21 at albany.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
>
>
> Dear MET developers:
>
> We are scientists from ASRC SUNY, who are trying to use your MET
tool to
> evaluate our model results.
>
> Here is a problem we want to consult. After we successfully compiled
the
> MET exec, when run the make test, here comes the following messages
for all
> exec:
>
> *** Running Gen-Poly-Mask to generate a polyline mask file for the
> Continental United States ***
> gen_poly_mask: error while loading shared libraries:
> /opt/pgi/linux86-64/14.2/libso/libpgftnrtl.so: cannot restore
segment prot
> after reloc: Permission denied
>
> Can this problem be solved by different compile option (right now we
use
> gcc, pgf90, gfortran etc.)? Or it is the system setup issue? Or any
> experience before?
>
> Please let us know if there is any suggestion, thank you.
>
> Cheers,
> Sheng-Po Chen
>
> ===================================
> Sheng-Po Chen, Ph. D.
> Research Scientist
> Atmospheric Sciences Research Center
> State University of New York at Albany
> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
> ===================================
>
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Run MET verification tool
From: ASRC
Time: Fri Apr 17 15:40:33 2015
Hi Julie,
Thanks for reply. I will try it later. Do you prefer which compiler
family is better for the all libraries used for MET?
Thanks,
Sheng-Po
===================================
Sheng-Po Chen, Ph. D.
Research Scientist
Atmospheric Sciences Research Center
State University of New York at Albany
Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
===================================
> On Apr 17, 2015, at 4:15 PM, Julie Prestopnik via RT
<met_help at ucar.edu> wrote:
>
> Hello. I am sorry to hear that you are experiencing problems with
make
> test. This is a system configuration issue. I noticed that you
said
> "right now we use gcc, pgf90, gfortran etc." It is important to
ensure
> that all of the supporting libraries for MET and MET be built using
the
> same family of compilers. So, you should use g++ and gfortran OR
pgcc and
> pgf90. Can you please verify that all of the supporting libraries
for MET
> and MET were built using the same family of compilers? If they were
not,
> please try rebuilding them and let us know if you run into any
problems.
> If they were, please send me the config.log and make_install.log
files.
>
> Thank you,
> Julie
>
> On Fri, Apr 17, 2015 at 12:22 PM, ASRC via RT <met_help at ucar.edu>
wrote:
>
>>
>> Fri Apr 17 12:22:10 2015: Request 71486 was acted upon.
>> Transaction: Ticket created by schen21 at albany.edu
>> Queue: met_help
>> Subject: Run MET verification tool
>> Owner: Nobody
>> Requestors: schen21 at albany.edu
>> Status: new
>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
>>
>>
>> Dear MET developers:
>>
>> We are scientists from ASRC SUNY, who are trying to use your MET
tool to
>> evaluate our model results.
>>
>> Here is a problem we want to consult. After we successfully
compiled the
>> MET exec, when run the make test, here comes the following messages
for all
>> exec:
>>
>> *** Running Gen-Poly-Mask to generate a polyline mask file for the
>> Continental United States ***
>> gen_poly_mask: error while loading shared libraries:
>> /opt/pgi/linux86-64/14.2/libso/libpgftnrtl.so: cannot restore
segment prot
>> after reloc: Permission denied
>>
>> Can this problem be solved by different compile option (right now
we use
>> gcc, pgf90, gfortran etc.)? Or it is the system setup issue? Or any
>> experience before?
>>
>> Please let us know if there is any suggestion, thank you.
>>
>> Cheers,
>> Sheng-Po Chen
>>
>> ===================================
>> Sheng-Po Chen, Ph. D.
>> Research Scientist
>> Atmospheric Sciences Research Center
>> State University of New York at Albany
>> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
>> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
>> ===================================
>>
>>
>>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
------------------------------------------------
Subject: Run MET verification tool
From: Julie Prestopnik
Time: Fri Apr 17 16:13:11 2015
I am using g++ and gfortran, but either compiler family should work
fine.
Julie
On Fri, Apr 17, 2015 at 3:40 PM, ASRC via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
>
> Hi Julie,
>
> Thanks for reply. I will try it later. Do you prefer which compiler
family
> is better for the all libraries used for MET?
>
> Thanks,
> Sheng-Po
>
> ===================================
> Sheng-Po Chen, Ph. D.
> Research Scientist
> Atmospheric Sciences Research Center
> State University of New York at Albany
> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
> ===================================
>
> > On Apr 17, 2015, at 4:15 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
> wrote:
> >
> > Hello. I am sorry to hear that you are experiencing problems with
make
> > test. This is a system configuration issue. I noticed that you
said
> > "right now we use gcc, pgf90, gfortran etc." It is important to
ensure
> > that all of the supporting libraries for MET and MET be built
using the
> > same family of compilers. So, you should use g++ and gfortran OR
pgcc
> and
> > pgf90. Can you please verify that all of the supporting libraries
for
> MET
> > and MET were built using the same family of compilers? If they
were not,
> > please try rebuilding them and let us know if you run into any
problems.
> > If they were, please send me the config.log and make_install.log
files.
> >
> > Thank you,
> > Julie
> >
> > On Fri, Apr 17, 2015 at 12:22 PM, ASRC via RT <met_help at ucar.edu>
wrote:
> >
> >>
> >> Fri Apr 17 12:22:10 2015: Request 71486 was acted upon.
> >> Transaction: Ticket created by schen21 at albany.edu
> >> Queue: met_help
> >> Subject: Run MET verification tool
> >> Owner: Nobody
> >> Requestors: schen21 at albany.edu
> >> Status: new
> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
> >>
> >>
> >> Dear MET developers:
> >>
> >> We are scientists from ASRC SUNY, who are trying to use your MET
tool to
> >> evaluate our model results.
> >>
> >> Here is a problem we want to consult. After we successfully
compiled the
> >> MET exec, when run the make test, here comes the following
messages for
> all
> >> exec:
> >>
> >> *** Running Gen-Poly-Mask to generate a polyline mask file for
the
> >> Continental United States ***
> >> gen_poly_mask: error while loading shared libraries:
> >> /opt/pgi/linux86-64/14.2/libso/libpgftnrtl.so: cannot restore
segment
> prot
> >> after reloc: Permission denied
> >>
> >> Can this problem be solved by different compile option (right now
we use
> >> gcc, pgf90, gfortran etc.)? Or it is the system setup issue? Or
any
> >> experience before?
> >>
> >> Please let us know if there is any suggestion, thank you.
> >>
> >> Cheers,
> >> Sheng-Po Chen
> >>
> >> ===================================
> >> Sheng-Po Chen, Ph. D.
> >> Research Scientist
> >> Atmospheric Sciences Research Center
> >> State University of New York at Albany
> >> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
> >> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
> >> ===================================
> >>
> >>
> >>
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
>
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Run MET verification tool
From: ASRC
Time: Sun Apr 19 10:09:48 2015
Hi Julie,
I used your same compiler family (g++, gfortran, gcc), and it worked.
Much appreciated!
However, while I step forward to test all the binaries, in MODIS-
Regrid tool (bin/modis_regrid), it seemed not work well. The
processing procedure for input file was not continued, and not error
messages coming. The follows are the command lines:
--------------------------------------------------------------------------------------------------------------------------
[schen at minserv1 met-5.0]$ bin/modis_regrid \
> -data_file data/sample_fcst/2005080712/wrfprs_ruc13_00.tm00_G212 \
> -field Surface_Temperature \
> -out tutorial/out/modis_regrid/m_sfc_temp.nc \
> -units K \
> -scale 0.01\
> -offset -15000 \
> -fill -32768 \
>
data/tutorial/sample_obs/modis/MYD06_L2.A2013032.0630.051.2013032185634.hdf
Usage: modis_regrid
-data_file path
-field name
-out path
-scale value
-offset value
-fill value
[ -units text ]
modis_file
where "-data_file path" specifies the data files used to get the
grid information
"-field name" specifies the name of the field to use in the
modis data file
"-out path" specifies the name of the output netcdf file
"-scale value" specifies the scale factor to be used on the
raw modis values
"-offset value" specifies the offset value to be used on the
raw modis values
"-fill value" specifies the bad data value in the modis data
"[ -units text ]" specifies units string in the global
attributes section of the output file (optional)
"modis file" is the name of the modis input file
--------------------------------------------------------------------------------------------------------------------------
Please let me know if there is any suggestion. I also attached the
make_install.log and make_test.log, FYI.
Thanks,
Sheng-Po
===================================
Sheng-Po Chen, Ph. D.
Research Scientist
Atmospheric Sciences Research Center
State University of New York at Albany
Tel: (518) 437-8633
e-mail: schen21 at albany.edu
===================================
On Apr 17, 2015, at 6:13 PM, Julie Prestopnik via RT wrote:
> I am using g++ and gfortran, but either compiler family should work
fine.
>
> Julie
>
> On Fri, Apr 17, 2015 at 3:40 PM, ASRC via RT <met_help at ucar.edu>
wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
>>
>> Hi Julie,
>>
>> Thanks for reply. I will try it later. Do you prefer which compiler
family
>> is better for the all libraries used for MET?
>>
>> Thanks,
>> Sheng-Po
>>
>> ===================================
>> Sheng-Po Chen, Ph. D.
>> Research Scientist
>> Atmospheric Sciences Research Center
>> State University of New York at Albany
>> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
>> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
>> ===================================
>>
>>> On Apr 17, 2015, at 4:15 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
>> wrote:
>>>
>>> Hello. I am sorry to hear that you are experiencing problems with
make
>>> test. This is a system configuration issue. I noticed that you
said
>>> "right now we use gcc, pgf90, gfortran etc." It is important to
ensure
>>> that all of the supporting libraries for MET and MET be built
using the
>>> same family of compilers. So, you should use g++ and gfortran OR
pgcc
>> and
>>> pgf90. Can you please verify that all of the supporting libraries
for
>> MET
>>> and MET were built using the same family of compilers? If they
were not,
>>> please try rebuilding them and let us know if you run into any
problems.
>>> If they were, please send me the config.log and make_install.log
files.
>>>
>>> Thank you,
>>> Julie
>>>
>>> On Fri, Apr 17, 2015 at 12:22 PM, ASRC via RT <met_help at ucar.edu>
wrote:
>>>
>>>>
>>>> Fri Apr 17 12:22:10 2015: Request 71486 was acted upon.
>>>> Transaction: Ticket created by schen21 at albany.edu
>>>> Queue: met_help
>>>> Subject: Run MET verification tool
>>>> Owner: Nobody
>>>> Requestors: schen21 at albany.edu
>>>> Status: new
>>>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
>>>>
>>>>
>>>> Dear MET developers:
>>>>
>>>> We are scientists from ASRC SUNY, who are trying to use your MET
tool to
>>>> evaluate our model results.
>>>>
>>>> Here is a problem we want to consult. After we successfully
compiled the
>>>> MET exec, when run the make test, here comes the following
messages for
>> all
>>>> exec:
>>>>
>>>> *** Running Gen-Poly-Mask to generate a polyline mask file for
the
>>>> Continental United States ***
>>>> gen_poly_mask: error while loading shared libraries:
>>>> /opt/pgi/linux86-64/14.2/libso/libpgftnrtl.so: cannot restore
segment
>> prot
>>>> after reloc: Permission denied
>>>>
>>>> Can this problem be solved by different compile option (right now
we use
>>>> gcc, pgf90, gfortran etc.)? Or it is the system setup issue? Or
any
>>>> experience before?
>>>>
>>>> Please let us know if there is any suggestion, thank you.
>>>>
>>>> Cheers,
>>>> Sheng-Po Chen
>>>>
>>>> ===================================
>>>> Sheng-Po Chen, Ph. D.
>>>> Research Scientist
>>>> Atmospheric Sciences Research Center
>>>> State University of New York at Albany
>>>> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
>>>> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
>>>> ===================================
>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Julie Prestopnik
>>> National Center for Atmospheric Research
>>> Research Applications Laboratory
>>> Phone: 303.497.8399
>>> Email: jpresto at ucar.edu
>>>
>>
>>
>>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
------------------------------------------------
Subject: Run MET verification tool
From: Julie Prestopnik
Time: Mon Apr 20 10:11:19 2015
Hi.
When you run a MET tool and just get the usage statement, that means
there's a problem in the command line arguments. I think it's a
simple
typo on your command line. It looks like there is not a trailing
space
before the continuation line marker in this line:
> -scale 0.01\
so the command line looks like this: ... -scale 0.01-offset.. with no
white-space in between.
Please give it another try and let us know if you experience any
problems.
Thanks,
Julie
On Sun, Apr 19, 2015 at 10:09 AM, ASRC via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
>
> Hi Julie,
>
> I used your same compiler family (g++, gfortran, gcc), and it
worked. Much
> appreciated!
>
> However, while I step forward to test all the binaries, in MODIS-
Regrid
> tool (bin/modis_regrid), it seemed not work well. The processing
procedure
> for input file was not continued, and not error messages coming. The
> follows are the command lines:
>
>
>
--------------------------------------------------------------------------------------------------------------------------
> [schen at minserv1 met-5.0]$ bin/modis_regrid \
> > -data_file data/sample_fcst/2005080712/wrfprs_ruc13_00.tm00_G212 \
> > -field Surface_Temperature \
> > -out tutorial/out/modis_regrid/m_sfc_temp.nc \
> > -units K \
> > -scale 0.01\
> > -offset -15000 \
> > -fill -32768 \
> >
>
data/tutorial/sample_obs/modis/MYD06_L2.A2013032.0630.051.2013032185634.hdf
>
>
> Usage: modis_regrid
> -data_file path
> -field name
> -out path
> -scale value
> -offset value
> -fill value
> [ -units text ]
> modis_file
>
> where "-data_file path" specifies the data files used to get the
grid
> information
> "-field name" specifies the name of the field to use in the
modis
> data file
> "-out path" specifies the name of the output netcdf file
> "-scale value" specifies the scale factor to be used on the
raw
> modis values
> "-offset value" specifies the offset value to be used on
the raw
> modis values
> "-fill value" specifies the bad data value in the modis
data
> "[ -units text ]" specifies units string in the global
attributes
> section of the output file (optional)
> "modis file" is the name of the modis input file
>
>
--------------------------------------------------------------------------------------------------------------------------
>
> Please let me know if there is any suggestion. I also attached the
> make_install.log and make_test.log, FYI.
>
> Thanks,
> Sheng-Po
>
>
>
> ===================================
> Sheng-Po Chen, Ph. D.
> Research Scientist
> Atmospheric Sciences Research Center
> State University of New York at Albany
> Tel: (518) 437-8633
> e-mail: schen21 at albany.edu
> ===================================
>
> On Apr 17, 2015, at 6:13 PM, Julie Prestopnik via RT wrote:
>
> > I am using g++ and gfortran, but either compiler family should
work fine.
> >
> > Julie
> >
> > On Fri, Apr 17, 2015 at 3:40 PM, ASRC via RT <met_help at ucar.edu>
wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
> >>
> >> Hi Julie,
> >>
> >> Thanks for reply. I will try it later. Do you prefer which
compiler
> family
> >> is better for the all libraries used for MET?
> >>
> >> Thanks,
> >> Sheng-Po
> >>
> >> ===================================
> >> Sheng-Po Chen, Ph. D.
> >> Research Scientist
> >> Atmospheric Sciences Research Center
> >> State University of New York at Albany
> >> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
> >> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
> >> ===================================
> >>
> >>> On Apr 17, 2015, at 4:15 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> >> wrote:
> >>>
> >>> Hello. I am sorry to hear that you are experiencing problems
with make
> >>> test. This is a system configuration issue. I noticed that you
said
> >>> "right now we use gcc, pgf90, gfortran etc." It is important to
ensure
> >>> that all of the supporting libraries for MET and MET be built
using the
> >>> same family of compilers. So, you should use g++ and gfortran
OR pgcc
> >> and
> >>> pgf90. Can you please verify that all of the supporting
libraries for
> >> MET
> >>> and MET were built using the same family of compilers? If they
were
> not,
> >>> please try rebuilding them and let us know if you run into any
> problems.
> >>> If they were, please send me the config.log and make_install.log
files.
> >>>
> >>> Thank you,
> >>> Julie
> >>>
> >>> On Fri, Apr 17, 2015 at 12:22 PM, ASRC via RT
<met_help at ucar.edu>
> wrote:
> >>>
> >>>>
> >>>> Fri Apr 17 12:22:10 2015: Request 71486 was acted upon.
> >>>> Transaction: Ticket created by schen21 at albany.edu
> >>>> Queue: met_help
> >>>> Subject: Run MET verification tool
> >>>> Owner: Nobody
> >>>> Requestors: schen21 at albany.edu
> >>>> Status: new
> >>>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486
> >
> >>>>
> >>>>
> >>>> Dear MET developers:
> >>>>
> >>>> We are scientists from ASRC SUNY, who are trying to use your
MET tool
> to
> >>>> evaluate our model results.
> >>>>
> >>>> Here is a problem we want to consult. After we successfully
compiled
> the
> >>>> MET exec, when run the make test, here comes the following
messages
> for
> >> all
> >>>> exec:
> >>>>
> >>>> *** Running Gen-Poly-Mask to generate a polyline mask file for
the
> >>>> Continental United States ***
> >>>> gen_poly_mask: error while loading shared libraries:
> >>>> /opt/pgi/linux86-64/14.2/libso/libpgftnrtl.so: cannot restore
segment
> >> prot
> >>>> after reloc: Permission denied
> >>>>
> >>>> Can this problem be solved by different compile option (right
now we
> use
> >>>> gcc, pgf90, gfortran etc.)? Or it is the system setup issue? Or
any
> >>>> experience before?
> >>>>
> >>>> Please let us know if there is any suggestion, thank you.
> >>>>
> >>>> Cheers,
> >>>> Sheng-Po Chen
> >>>>
> >>>> ===================================
> >>>> Sheng-Po Chen, Ph. D.
> >>>> Research Scientist
> >>>> Atmospheric Sciences Research Center
> >>>> State University of New York at Albany
> >>>> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
> >>>> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com>
> >>>> ===================================
> >>>>
> >>>>
> >>>>
> >>>
> >>>
> >>> --
> >>> Julie Prestopnik
> >>> National Center for Atmospheric Research
> >>> Research Applications Laboratory
> >>> Phone: 303.497.8399
> >>> Email: jpresto at ucar.edu
> >>>
> >>
> >>
> >>
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
>
>
>
> Hi Julie,
>
> I used your same compiler family (g++, gfortran, gcc), and it
worked. Much
> appreciated!
>
> However, while I step forward to test all the binaries, in MODIS-
Regrid
> tool (bin/modis_regrid), it seemed not work well. The processing
procedure
> for input file was not continued, and not error messages coming. The
> follows are the command lines:
>
>
>
--------------------------------------------------------------------------------------------------------------------------
> [schen at minserv1 met-5.0]$ bin/modis_regrid \
> > -data_file data/sample_fcst/2005080712/wrfprs_ruc13_00.tm00_G212 \
> > -field Surface_Temperature \
> > -out tutorial/out/modis_regrid/m_sfc_temp.nc \
> > -units K \
> > -scale 0.01\
> > -offset -15000 \
> > -fill -32768 \
> >
>
data/tutorial/sample_obs/modis/MYD06_L2.A2013032.0630.051.2013032185634.hdf
>
>
> Usage: modis_regrid
> -data_file path
> -field name
> -out path
> -scale value
> -offset value
> -fill value
> [ -units text ]
> modis_file
>
> where "-data_file path" specifies the data files used to get the
grid
> information
> "-field name" specifies the name of the field to use in the
modis
> data file
> "-out path" specifies the name of the output netcdf file
> "-scale value" specifies the scale factor to be used on the
raw
> modis values
> "-offset value" specifies the offset value to be used on
the raw
> modis values
> "-fill value" specifies the bad data value in the modis
data
> "[ -units text ]" specifies units string in the global
attributes
> section of the output file (optional)
> "modis file" is the name of the modis input file
>
>
--------------------------------------------------------------------------------------------------------------------------
>
> Please let me know if there is any suggestion. I also attached the
> make_install.log and make_test.log, FYI.
>
> Thanks,
> Sheng-Po
>
>
>
>
> ===================================
> Sheng-Po Chen, Ph. D.
> Research Scientist
> Atmospheric Sciences Research Center
> State University of New York at Albany
> Tel: (518) 437-8633
> e-mail: schen21 at albany.edu <g9363113 at gmail.com>
> ===================================
>
> On Apr 17, 2015, at 6:13 PM, Julie Prestopnik via RT wrote:
>
> I am using g++ and gfortran, but either compiler family should work
fine.
>
> Julie
>
> On Fri, Apr 17, 2015 at 3:40 PM, ASRC via RT <met_help at ucar.edu>
wrote:
>
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486 >
>
>
> Hi Julie,
>
>
> Thanks for reply. I will try it later. Do you prefer which compiler
family
>
> is better for the all libraries used for MET?
>
>
> Thanks,
>
> Sheng-Po
>
>
> ===================================
>
> Sheng-Po Chen, Ph. D.
>
> Research Scientist
>
> Atmospheric Sciences Research Center
>
> State University of New York at Albany
>
> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
>
> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com
<g9363113 at gmail.com>
> >
>
> ===================================
>
>
> On Apr 17, 2015, at 4:15 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
>
> wrote:
>
>
> Hello. I am sorry to hear that you are experiencing problems with
make
>
> test. This is a system configuration issue. I noticed that you
said
>
> "right now we use gcc, pgf90, gfortran etc." It is important to
ensure
>
> that all of the supporting libraries for MET and MET be built using
the
>
> same family of compilers. So, you should use g++ and gfortran OR
pgcc
>
> and
>
> pgf90. Can you please verify that all of the supporting libraries
for
>
> MET
>
> and MET were built using the same family of compilers? If they were
not,
>
> please try rebuilding them and let us know if you run into any
problems.
>
> If they were, please send me the config.log and make_install.log
files.
>
>
> Thank you,
>
> Julie
>
>
> On Fri, Apr 17, 2015 at 12:22 PM, ASRC via RT <met_help at ucar.edu>
wrote:
>
>
>
> Fri Apr 17 12:22:10 2015: Request 71486 was acted upon.
>
> Transaction: Ticket created by schen21 at albany.edu
>
> Queue: met_help
>
> Subject: Run MET verification tool
>
> Owner: Nobody
>
> Requestors: schen21 at albany.edu
>
> Status: new
>
> Ticket <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=71486
>
>
>
>
> Dear MET developers:
>
>
> We are scientists from ASRC SUNY, who are trying to use your MET
tool to
>
> evaluate our model results.
>
>
> Here is a problem we want to consult. After we successfully compiled
the
>
> MET exec, when run the make test, here comes the following messages
for
>
> all
>
> exec:
>
>
> *** Running Gen-Poly-Mask to generate a polyline mask file for the
>
> Continental United States ***
>
> gen_poly_mask: error while loading shared libraries:
>
> /opt/pgi/linux86-64/14.2/libso/libpgftnrtl.so: cannot restore
segment
>
> prot
>
> after reloc: Permission denied
>
>
> Can this problem be solved by different compile option (right now we
use
>
> gcc, pgf90, gfortran etc.)? Or it is the system setup issue? Or any
>
> experience before?
>
>
> Please let us know if there is any suggestion, thank you.
>
>
> Cheers,
>
> Sheng-Po Chen
>
>
> ===================================
>
> Sheng-Po Chen, Ph. D.
>
> Research Scientist
>
> Atmospheric Sciences Research Center
>
> State University of New York at Albany
>
> Tel: (518) 437-8633 <tel:%28518%29%20437-8633>
>
> e-mail: schen21 at albany.edu <mailto:g9363113 at gmail.com
<g9363113 at gmail.com>
> >
>
> ===================================
>
>
>
>
>
>
> --
>
> Julie Prestopnik
>
> National Center for Atmospheric Research
>
> Research Applications Laboratory
>
> Phone: 303.497.8399
>
> Email: jpresto at ucar.edu
>
>
>
>
>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
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