[Met_help] [rt.rap.ucar.edu #70551] History for Problem compiling Met-V5
Julie Prestopnik via RT
met_help at ucar.edu
Thu Mar 5 15:12:40 MST 2015
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
I have installed BUFRLIB, GSL and G2CLIB
But then how do I handle the errors below in installing MET_V5?
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23: undefined
reference to `ufbtab_'
openpb.o: In function `openpb_':
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21: undefined
reference to `openbf_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22: undefined
reference to `datelen_'
closepb.o: In function `closepb_':
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19: undefined
reference to `closbf_'
readpb.o: In function `readpb_':
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82: undefined
reference to `ireadns_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90: undefined
reference to `ufbint_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94: undefined
reference to `ufbevn_'
dumppb.o: In function `readpbdump_':
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215: undefined
reference to `ufbint_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218: undefined
reference to `ufbevn_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224: undefined
reference to `ireadns_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203: undefined
reference to `ireadns_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228: undefined
reference to `ufbint_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259: undefined
reference to `ufbevn_'
dumppb.o: In function `dumppb_':
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56: undefined
reference to `openbf_'
/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57: undefined
reference to `datelen_'
collect2: error: ld returned 1 exit status
make[4]: *** [pb2nc] Error 1
make[4]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
make[3]: *** [install-recursive] Error 1
make[3]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools/other'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
make: *** [install-recursive] Error 1
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Problem compiling Met-V5
From: Julie Prestopnik
Time: Thu Jan 29 09:24:22 2015
I am sorry to hear that you are having problems installing METv5.0. I
believe this error may have to do with how you compiled BUFRLIB.
Please
take a look at the sample commands for compiling BURFLIB on this page:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
I believe that the *-fno-second-underscore* (GNU compilers) or
*-Mnosecond_underscore* (PGI compilers) will fix the error you're
seeing.
I hope that helps. If it doesn't, please send me the files
"make_met.log"
and "config.log".
Thanks,
Julie
On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
<met_help at ucar.edu>
wrote:
>
> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
> Transaction: Ticket created by zmumba at gmail.com
> Queue: met_help
> Subject: Problem compiling Met-V5
> Owner: Nobody
> Requestors: zmumba at gmail.com
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>
>
> I have installed BUFRLIB, GSL and G2CLIB
> But then how do I handle the errors below in installing MET_V5?
>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
undefined
> reference to `ufbtab_'
> openpb.o: In function `openpb_':
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
undefined
> reference to `openbf_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
undefined
> reference to `datelen_'
> closepb.o: In function `closepb_':
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
undefined
> reference to `closbf_'
> readpb.o: In function `readpb_':
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
undefined
> reference to `ireadns_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
undefined
> reference to `ufbint_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
undefined
> reference to `ufbevn_'
> dumppb.o: In function `readpbdump_':
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
undefined
> reference to `ufbint_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
undefined
> reference to `ufbevn_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
undefined
> reference to `ireadns_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
undefined
> reference to `ireadns_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
undefined
> reference to `ufbint_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
undefined
> reference to `ufbevn_'
> dumppb.o: In function `dumppb_':
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
undefined
> reference to `openbf_'
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
undefined
> reference to `datelen_'
> collect2: error: ld returned 1 exit status
> make[4]: *** [pb2nc] Error 1
> make[4]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc'
> make[3]: *** [install-recursive] Error 1
> make[3]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools/other'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
> make: *** [install-recursive] Error 1
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #70551] Problem compiling Met-V5
From: Zilore Mumba
Time: Sat Jan 31 17:31:45 2015
Julg
Thank you very much for your help. With the advice you gave me, I was
able to install MET using gcc and gfortran. I also had to to point
$MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-4.1.3/lib and
include. Previously I pointed only to /usr/local/netcdf-4.1.3.
I have three executables not included though, these are modis_regrid,
plot_mode_field and pb2nc.
Thank you very much.
On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> I am sorry to hear that you are having problems installing METv5.0.
I
> believe this error may have to do with how you compiled BUFRLIB.
Please
> take a look at the sample commands for compiling BURFLIB on this
page:
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>
> I believe that the *-fno-second-underscore* (GNU compilers) or
> *-Mnosecond_underscore* (PGI compilers) will fix the error you're
seeing.
>
> I hope that helps. If it doesn't, please send me the files
"make_met.log"
> and "config.log".
>
> Thanks,
> Julie
>
>
> On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
<met_help at ucar.edu>
> wrote:
>
>>
>> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
>> Transaction: Ticket created by zmumba at gmail.com
>> Queue: met_help
>> Subject: Problem compiling Met-V5
>> Owner: Nobody
>> Requestors: zmumba at gmail.com
>> Status: new
>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>>
>>
>> I have installed BUFRLIB, GSL and G2CLIB
>> But then how do I handle the errors below in installing MET_V5?
>>
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
undefined
>> reference to `ufbtab_'
>> openpb.o: In function `openpb_':
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
undefined
>> reference to `openbf_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
undefined
>> reference to `datelen_'
>> closepb.o: In function `closepb_':
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
undefined
>> reference to `closbf_'
>> readpb.o: In function `readpb_':
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
undefined
>> reference to `ireadns_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
undefined
>> reference to `ufbint_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
undefined
>> reference to `ufbevn_'
>> dumppb.o: In function `readpbdump_':
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
undefined
>> reference to `ufbint_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
undefined
>> reference to `ufbevn_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
undefined
>> reference to `ireadns_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
undefined
>> reference to `ireadns_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
undefined
>> reference to `ufbint_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
undefined
>> reference to `ufbevn_'
>> dumppb.o: In function `dumppb_':
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
undefined
>> reference to `openbf_'
>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
undefined
>> reference to `datelen_'
>> collect2: error: ld returned 1 exit status
>> make[4]: *** [pb2nc] Error 1
>> make[4]: Leaving directory
>> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
>> make[3]: *** [install-recursive] Error 1
>> make[3]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools/other'
>> make[2]: *** [install-recursive] Error 1
>> make[2]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools'
>> make[1]: *** [install-recursive] Error 1
>> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
>> make: *** [install-recursive] Error 1
>>
>>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #70551] Problem compiling Met-V5
From: Zilore Mumba
Time: Sat Jan 31 17:31:58 2015
On 2/1/15, Zilore Mumba <zmumba at gmail.com> wrote:
> Julg
> Thank you very much for your help. With the advice you gave me, I
was
> able to install MET using gcc and gfortran. I also had to to point
> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-4.1.3/lib
and
> include. Previously I pointed only to /usr/local/netcdf-4.1.3.
> I have three executables not included though, these are
modis_regrid,
> plot_mode_field and pb2nc.
> Thank you very much.
>
>
> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
>> I am sorry to hear that you are having problems installing METv5.0.
I
>> believe this error may have to do with how you compiled BUFRLIB.
Please
>> take a look at the sample commands for compiling BURFLIB on this
page:
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>>
>> I believe that the *-fno-second-underscore* (GNU compilers) or
>> *-Mnosecond_underscore* (PGI compilers) will fix the error you're
seeing.
>>
>> I hope that helps. If it doesn't, please send me the files
>> "make_met.log"
>> and "config.log".
>>
>> Thanks,
>> Julie
>>
>>
>> On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
<met_help at ucar.edu>
>> wrote:
>>
>>>
>>> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
>>> Transaction: Ticket created by zmumba at gmail.com
>>> Queue: met_help
>>> Subject: Problem compiling Met-V5
>>> Owner: Nobody
>>> Requestors: zmumba at gmail.com
>>> Status: new
>>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>>>
>>>
>>> I have installed BUFRLIB, GSL and G2CLIB
>>> But then how do I handle the errors below in installing MET_V5?
>>>
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
undefined
>>> reference to `ufbtab_'
>>> openpb.o: In function `openpb_':
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
undefined
>>> reference to `openbf_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
undefined
>>> reference to `datelen_'
>>> closepb.o: In function `closepb_':
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
undefined
>>> reference to `closbf_'
>>> readpb.o: In function `readpb_':
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
undefined
>>> reference to `ireadns_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
undefined
>>> reference to `ufbint_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
undefined
>>> reference to `ufbevn_'
>>> dumppb.o: In function `readpbdump_':
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
undefined
>>> reference to `ufbint_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
undefined
>>> reference to `ufbevn_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
undefined
>>> reference to `ireadns_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
undefined
>>> reference to `ireadns_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
undefined
>>> reference to `ufbint_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
undefined
>>> reference to `ufbevn_'
>>> dumppb.o: In function `dumppb_':
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
undefined
>>> reference to `openbf_'
>>> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
undefined
>>> reference to `datelen_'
>>> collect2: error: ld returned 1 exit status
>>> make[4]: *** [pb2nc] Error 1
>>> make[4]: Leaving directory
>>> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
>>> make[3]: *** [install-recursive] Error 1
>>> make[3]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools/other'
>>> make[2]: *** [install-recursive] Error 1
>>> make[2]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools'
>>> make[1]: *** [install-recursive] Error 1
>>> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
>>> make: *** [install-recursive] Error 1
>>>
>>>
>>
>>
>> --
>> Julie Prestopnik
>> National Center for Atmospheric Research
>> Research Applications Laboratory
>> Phone: 303.497.8399
>> Email: jpresto at ucar.edu
>>
>>
>
------------------------------------------------
Subject: Problem compiling Met-V5
From: Julie Prestopnik
Time: Mon Feb 02 13:46:18 2015
I'm so glad you were able to get MET installed and that you worked out
the
issue with the NetCDF environment variables.
You mentioned that three executables did not build. I would like to
try to
help with those. The modis_regrid tool has library dependencies - it
requires the HDF4 and HDF-EOS2 libraries. The plot_mode_field tool
also
has library dependencies - it requires the Cairo and FreeType
libraries.
You can find information on compiling each of those library
dependencies
here:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
You can find information on setting the up necessary environment
variables
for those library locations here:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
And with pb2nc, I'm not exactly sure what is going on there. I would
be
happy to take a look at your configure log and make install log files
to
see if I can figure out why you didn't get the executable.
I hope this helps.
Thanks,
Julie
On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>
> Julg
> Thank you very much for your help. With the advice you gave me, I
was
> able to install MET using gcc and gfortran. I also had to to point
> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-4.1.3/lib
and
> include. Previously I pointed only to /usr/local/netcdf-4.1.3.
> I have three executables not included though, these are
modis_regrid,
> plot_mode_field and pb2nc.
> Thank you very much.
>
>
> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > I am sorry to hear that you are having problems installing
METv5.0. I
> > believe this error may have to do with how you compiled BUFRLIB.
Please
> > take a look at the sample commands for compiling BURFLIB on this
page:
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >
> > I believe that the *-fno-second-underscore* (GNU compilers) or
> > *-Mnosecond_underscore* (PGI compilers) will fix the error you're
seeing.
> >
> > I hope that helps. If it doesn't, please send me the files
> "make_met.log"
> > and "config.log".
> >
> > Thanks,
> > Julie
> >
> >
> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
<met_help at ucar.edu>
> > wrote:
> >
> >>
> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
> >> Transaction: Ticket created by zmumba at gmail.com
> >> Queue: met_help
> >> Subject: Problem compiling Met-V5
> >> Owner: Nobody
> >> Requestors: zmumba at gmail.com
> >> Status: new
> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> >>
> >>
> >> I have installed BUFRLIB, GSL and G2CLIB
> >> But then how do I handle the errors below in installing MET_V5?
> >>
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
undefined
> >> reference to `ufbtab_'
> >> openpb.o: In function `openpb_':
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
undefined
> >> reference to `openbf_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
undefined
> >> reference to `datelen_'
> >> closepb.o: In function `closepb_':
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
undefined
> >> reference to `closbf_'
> >> readpb.o: In function `readpb_':
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
undefined
> >> reference to `ireadns_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
undefined
> >> reference to `ufbint_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
undefined
> >> reference to `ufbevn_'
> >> dumppb.o: In function `readpbdump_':
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
undefined
> >> reference to `ufbint_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
undefined
> >> reference to `ufbevn_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
undefined
> >> reference to `ireadns_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
undefined
> >> reference to `ireadns_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
undefined
> >> reference to `ufbint_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
undefined
> >> reference to `ufbevn_'
> >> dumppb.o: In function `dumppb_':
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
undefined
> >> reference to `openbf_'
> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
undefined
> >> reference to `datelen_'
> >> collect2: error: ld returned 1 exit status
> >> make[4]: *** [pb2nc] Error 1
> >> make[4]: Leaving directory
> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> >> make[3]: *** [install-recursive] Error 1
> >> make[3]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools/other'
> >> make[2]: *** [install-recursive] Error 1
> >> make[2]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools'
> >> make[1]: *** [install-recursive] Error 1
> >> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
> >> make: *** [install-recursive] Error 1
> >>
> >>
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Problem compiling Met-V5
From: Zilore Mumba
Time: Tue Feb 03 14:08:38 2015
Julie,
Thank you very much for your assistance. I failed to install Cairo and
freetype because of the dependencies. I will try again with the links
you sent me.
Please find attached my config.log and make-install.log.
On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> I'm so glad you were able to get MET installed and that you worked
out the
> issue with the NetCDF environment variables.
>
> You mentioned that three executables did not build. I would like to
try to
> help with those. The modis_regrid tool has library dependencies -
it
> requires the HDF4 and HDF-EOS2 libraries. The plot_mode_field tool
also
> has library dependencies - it requires the Cairo and FreeType
libraries.
>
> You can find information on compiling each of those library
dependencies
> here:
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>
> You can find information on setting the up necessary environment
variables
> for those library locations here:
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
>
> And with pb2nc, I'm not exactly sure what is going on there. I
would be
> happy to take a look at your configure log and make install log
files to
> see if I can figure out why you didn't get the executable.
>
> I hope this helps.
>
> Thanks,
> Julie
>
>
>
> On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
<met_help at ucar.edu>
> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>>
>> Julg
>> Thank you very much for your help. With the advice you gave me, I
was
>> able to install MET using gcc and gfortran. I also had to to point
>> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-4.1.3/lib
and
>> include. Previously I pointed only to /usr/local/netcdf-4.1.3.
>> I have three executables not included though, these are
modis_regrid,
>> plot_mode_field and pb2nc.
>> Thank you very much.
>>
>>
>> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
>> > I am sorry to hear that you are having problems installing
METv5.0. I
>> > believe this error may have to do with how you compiled BUFRLIB.
>> > Please
>> > take a look at the sample commands for compiling BURFLIB on this
page:
>> >
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>> >
>> > I believe that the *-fno-second-underscore* (GNU compilers) or
>> > *-Mnosecond_underscore* (PGI compilers) will fix the error you're
>> > seeing.
>> >
>> > I hope that helps. If it doesn't, please send me the files
>> "make_met.log"
>> > and "config.log".
>> >
>> > Thanks,
>> > Julie
>> >
>> >
>> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
>> > <met_help at ucar.edu>
>> > wrote:
>> >
>> >>
>> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
>> >> Transaction: Ticket created by zmumba at gmail.com
>> >> Queue: met_help
>> >> Subject: Problem compiling Met-V5
>> >> Owner: Nobody
>> >> Requestors: zmumba at gmail.com
>> >> Status: new
>> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
>> >> >
>> >>
>> >>
>> >> I have installed BUFRLIB, GSL and G2CLIB
>> >> But then how do I handle the errors below in installing MET_V5?
>> >>
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
>> >> undefined
>> >> reference to `ufbtab_'
>> >> openpb.o: In function `openpb_':
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
undefined
>> >> reference to `openbf_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
undefined
>> >> reference to `datelen_'
>> >> closepb.o: In function `closepb_':
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
undefined
>> >> reference to `closbf_'
>> >> readpb.o: In function `readpb_':
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
undefined
>> >> reference to `ireadns_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
undefined
>> >> reference to `ufbint_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
undefined
>> >> reference to `ufbevn_'
>> >> dumppb.o: In function `readpbdump_':
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
undefined
>> >> reference to `ufbint_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
undefined
>> >> reference to `ufbevn_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
undefined
>> >> reference to `ireadns_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
undefined
>> >> reference to `ireadns_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
undefined
>> >> reference to `ufbint_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
undefined
>> >> reference to `ufbevn_'
>> >> dumppb.o: In function `dumppb_':
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
undefined
>> >> reference to `openbf_'
>> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
undefined
>> >> reference to `datelen_'
>> >> collect2: error: ld returned 1 exit status
>> >> make[4]: *** [pb2nc] Error 1
>> >> make[4]: Leaving directory
>> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
>> >> make[3]: *** [install-recursive] Error 1
>> >> make[3]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools/other'
>> >> make[2]: *** [install-recursive] Error 1
>> >> make[2]: Leaving directory `/home/zmumba/WRF/met-5.0/src/tools'
>> >> make[1]: *** [install-recursive] Error 1
>> >> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
>> >> make: *** [install-recursive] Error 1
>> >>
>> >>
>> >
>> >
>> > --
>> > Julie Prestopnik
>> > National Center for Atmospheric Research
>> > Research Applications Laboratory
>> > Phone: 303.497.8399
>> > Email: jpresto at ucar.edu
>> >
>> >
>>
>>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: Problem compiling Met-V5
From: Julie Prestopnik
Time: Thu Feb 05 11:47:34 2015
Thank you for attaching your log files. I did not see any errors in
your
make-install.log. Perhaps you ran make install in the following way:
make install > make-install.log
This would catch standard out but not standard error.
Could you please try running in the following way with the &, which
will
also capture standard error?
make install >& make-install.log
And, then please send me the output of that log. Thank you!
Julie
On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>
> Julie,
> Thank you very much for your assistance. I failed to install Cairo
and
> freetype because of the dependencies. I will try again with the
links
> you sent me.
> Please find attached my config.log and make-install.log.
>
>
> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > I'm so glad you were able to get MET installed and that you worked
out
> the
> > issue with the NetCDF environment variables.
> >
> > You mentioned that three executables did not build. I would like
to try
> to
> > help with those. The modis_regrid tool has library dependencies -
it
> > requires the HDF4 and HDF-EOS2 libraries. The plot_mode_field
tool also
> > has library dependencies - it requires the Cairo and FreeType
libraries.
> >
> > You can find information on compiling each of those library
dependencies
> > here:
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >
> > You can find information on setting the up necessary environment
> variables
> > for those library locations here:
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> >
> > And with pb2nc, I'm not exactly sure what is going on there. I
would be
> > happy to take a look at your configure log and make install log
files to
> > see if I can figure out why you didn't get the executable.
> >
> > I hope this helps.
> >
> > Thanks,
> > Julie
> >
> >
> >
> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
<met_help at ucar.edu>
> > wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> >>
> >> Julg
> >> Thank you very much for your help. With the advice you gave me, I
was
> >> able to install MET using gcc and gfortran. I also had to to
point
> >> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-4.1.3/lib
and
> >> include. Previously I pointed only to /usr/local/netcdf-4.1.3.
> >> I have three executables not included though, these are
modis_regrid,
> >> plot_mode_field and pb2nc.
> >> Thank you very much.
> >>
> >>
> >> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> >> > I am sorry to hear that you are having problems installing
METv5.0. I
> >> > believe this error may have to do with how you compiled
BUFRLIB.
> >> > Please
> >> > take a look at the sample commands for compiling BURFLIB on
this page:
> >> >
> >>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >> >
> >> > I believe that the *-fno-second-underscore* (GNU compilers) or
> >> > *-Mnosecond_underscore* (PGI compilers) will fix the error
you're
> >> > seeing.
> >> >
> >> > I hope that helps. If it doesn't, please send me the files
> >> "make_met.log"
> >> > and "config.log".
> >> >
> >> > Thanks,
> >> > Julie
> >> >
> >> >
> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
> >> > <met_help at ucar.edu>
> >> > wrote:
> >> >
> >> >>
> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
> >> >> Transaction: Ticket created by zmumba at gmail.com
> >> >> Queue: met_help
> >> >> Subject: Problem compiling Met-V5
> >> >> Owner: Nobody
> >> >> Requestors: zmumba at gmail.com
> >> >> Status: new
> >> >> Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> >> >> >
> >> >>
> >> >>
> >> >> I have installed BUFRLIB, GSL and G2CLIB
> >> >> But then how do I handle the errors below in installing
MET_V5?
> >> >>
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> >> >> undefined
> >> >> reference to `ufbtab_'
> >> >> openpb.o: In function `openpb_':
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
undefined
> >> >> reference to `openbf_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
undefined
> >> >> reference to `datelen_'
> >> >> closepb.o: In function `closepb_':
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
> undefined
> >> >> reference to `closbf_'
> >> >> readpb.o: In function `readpb_':
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
undefined
> >> >> reference to `ireadns_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
undefined
> >> >> reference to `ufbint_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
undefined
> >> >> reference to `ufbevn_'
> >> >> dumppb.o: In function `readpbdump_':
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
> undefined
> >> >> reference to `ufbint_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
> undefined
> >> >> reference to `ufbevn_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
> undefined
> >> >> reference to `ireadns_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
> undefined
> >> >> reference to `ireadns_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
> undefined
> >> >> reference to `ufbint_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
> undefined
> >> >> reference to `ufbevn_'
> >> >> dumppb.o: In function `dumppb_':
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
undefined
> >> >> reference to `openbf_'
> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
undefined
> >> >> reference to `datelen_'
> >> >> collect2: error: ld returned 1 exit status
> >> >> make[4]: *** [pb2nc] Error 1
> >> >> make[4]: Leaving directory
> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> >> >> make[3]: *** [install-recursive] Error 1
> >> >> make[3]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools/other'
> >> >> make[2]: *** [install-recursive] Error 1
> >> >> make[2]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools'
> >> >> make[1]: *** [install-recursive] Error 1
> >> >> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
> >> >> make: *** [install-recursive] Error 1
> >> >>
> >> >>
> >> >
> >> >
> >> > --
> >> > Julie Prestopnik
> >> > National Center for Atmospheric Research
> >> > Research Applications Laboratory
> >> > Phone: 303.497.8399
> >> > Email: jpresto at ucar.edu
> >> >
> >> >
> >>
> >>
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Problem compiling Met-V5
From: Zilore Mumba
Time: Sat Feb 07 21:36:58 2015
Julie,
Attached to this mail, please find the file make-install.log. It does
show 'undefined reference' to some functions. I hope this means
something to you and that you can help.
Thanks in advance
Zilore
On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> Thank you for attaching your log files. I did not see any errors in
your
> make-install.log. Perhaps you ran make install in the following
way:
>
> make install > make-install.log
>
> This would catch standard out but not standard error.
>
> Could you please try running in the following way with the &, which
will
> also capture standard error?
>
> make install >& make-install.log
>
> And, then please send me the output of that log. Thank you!
>
> Julie
>
> On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT
<met_help at ucar.edu>
> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>>
>> Julie,
>> Thank you very much for your assistance. I failed to install Cairo
and
>> freetype because of the dependencies. I will try again with the
links
>> you sent me.
>> Please find attached my config.log and make-install.log.
>>
>>
>> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
>> > I'm so glad you were able to get MET installed and that you
worked out
>> the
>> > issue with the NetCDF environment variables.
>> >
>> > You mentioned that three executables did not build. I would like
to
>> > try
>> to
>> > help with those. The modis_regrid tool has library dependencies
- it
>> > requires the HDF4 and HDF-EOS2 libraries. The plot_mode_field
tool
>> > also
>> > has library dependencies - it requires the Cairo and FreeType
>> > libraries.
>> >
>> > You can find information on compiling each of those library
>> > dependencies
>> > here:
>> >
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>> >
>> > You can find information on setting the up necessary environment
>> variables
>> > for those library locations here:
>> >
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
>> >
>> > And with pb2nc, I'm not exactly sure what is going on there. I
would
>> > be
>> > happy to take a look at your configure log and make install log
files
>> > to
>> > see if I can figure out why you didn't get the executable.
>> >
>> > I hope this helps.
>> >
>> > Thanks,
>> > Julie
>> >
>> >
>> >
>> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
>> > <met_help at ucar.edu>
>> > wrote:
>> >
>> >>
>> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>> >>
>> >> Julg
>> >> Thank you very much for your help. With the advice you gave me,
I was
>> >> able to install MET using gcc and gfortran. I also had to to
point
>> >> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-
4.1.3/lib and
>> >> include. Previously I pointed only to /usr/local/netcdf-4.1.3.
>> >> I have three executables not included though, these are
modis_regrid,
>> >> plot_mode_field and pb2nc.
>> >> Thank you very much.
>> >>
>> >>
>> >> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
>> >> > I am sorry to hear that you are having problems installing
METv5.0.
>> >> > I
>> >> > believe this error may have to do with how you compiled
BUFRLIB.
>> >> > Please
>> >> > take a look at the sample commands for compiling BURFLIB on
this
>> >> > page:
>> >> >
>> >>
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>> >> >
>> >> > I believe that the *-fno-second-underscore* (GNU compilers) or
>> >> > *-Mnosecond_underscore* (PGI compilers) will fix the error
you're
>> >> > seeing.
>> >> >
>> >> > I hope that helps. If it doesn't, please send me the files
>> >> "make_met.log"
>> >> > and "config.log".
>> >> >
>> >> > Thanks,
>> >> > Julie
>> >> >
>> >> >
>> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
>> >> > <met_help at ucar.edu>
>> >> > wrote:
>> >> >
>> >> >>
>> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
>> >> >> Transaction: Ticket created by zmumba at gmail.com
>> >> >> Queue: met_help
>> >> >> Subject: Problem compiling Met-V5
>> >> >> Owner: Nobody
>> >> >> Requestors: zmumba at gmail.com
>> >> >> Status: new
>> >> >> Ticket <URL:
>> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
>> >> >> >
>> >> >>
>> >> >>
>> >> >> I have installed BUFRLIB, GSL and G2CLIB
>> >> >> But then how do I handle the errors below in installing
MET_V5?
>> >> >>
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
>> >> >> undefined
>> >> >> reference to `ufbtab_'
>> >> >> openpb.o: In function `openpb_':
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
>> >> >> undefined
>> >> >> reference to `openbf_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
>> >> >> undefined
>> >> >> reference to `datelen_'
>> >> >> closepb.o: In function `closepb_':
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
>> undefined
>> >> >> reference to `closbf_'
>> >> >> readpb.o: In function `readpb_':
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
>> >> >> undefined
>> >> >> reference to `ireadns_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
>> >> >> undefined
>> >> >> reference to `ufbint_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
>> >> >> undefined
>> >> >> reference to `ufbevn_'
>> >> >> dumppb.o: In function `readpbdump_':
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
>> undefined
>> >> >> reference to `ufbint_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
>> undefined
>> >> >> reference to `ufbevn_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
>> undefined
>> >> >> reference to `ireadns_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
>> undefined
>> >> >> reference to `ireadns_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
>> undefined
>> >> >> reference to `ufbint_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
>> undefined
>> >> >> reference to `ufbevn_'
>> >> >> dumppb.o: In function `dumppb_':
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
>> >> >> undefined
>> >> >> reference to `openbf_'
>> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
>> >> >> undefined
>> >> >> reference to `datelen_'
>> >> >> collect2: error: ld returned 1 exit status
>> >> >> make[4]: *** [pb2nc] Error 1
>> >> >> make[4]: Leaving directory
>> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
>> >> >> make[3]: *** [install-recursive] Error 1
>> >> >> make[3]: Leaving directory
>> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
>> >> >> make[2]: *** [install-recursive] Error 1
>> >> >> make[2]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools'
>> >> >> make[1]: *** [install-recursive] Error 1
>> >> >> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
>> >> >> make: *** [install-recursive] Error 1
>> >> >>
>> >> >>
>> >> >
>> >> >
>> >> > --
>> >> > Julie Prestopnik
>> >> > National Center for Atmospheric Research
>> >> > Research Applications Laboratory
>> >> > Phone: 303.497.8399
>> >> > Email: jpresto at ucar.edu
>> >> >
>> >> >
>> >>
>> >>
>> >
>> >
>> > --
>> > Julie Prestopnik
>> > National Center for Atmospheric Research
>> > Research Applications Laboratory
>> > Phone: 303.497.8399
>> > Email: jpresto at ucar.edu
>> >
>> >
>>
>>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: Problem compiling Met-V5
From: Julie Prestopnik
Time: Tue Feb 10 10:12:53 2015
Thank you for rerunning and sending this log. Perhaps MET cannot find
the
BUFR library.
On the following page are directions for setting the environment
variables
before compiling MET:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
The rest of the applications built, so it looks like MET was able to
find
the other needed libraries. The directions for the BUFR environment
variable on the above page are:
"Set *$MET_BUFR* to point to the main BUFR directory, or set
*$MET_BUFRLIB*
to point to the directory with the BUFR library files. Because MET
doesn't
use any BUFR library include files, you don't need to specify
*$MET_BUFRINC*
."
Please try setting either *$MET_BUFR *or *$MET_BUFRLIB *and then
please
rerun the configure script and then rerun make install. It is
important to
rerun configure before rerunning make install.
Please let me know how it goes.
Thanks,
Julie
On Sat, Feb 7, 2015 at 9:36 PM, Zilore Mumba via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>
> Julie,
> Attached to this mail, please find the file make-install.log. It
does
> show 'undefined reference' to some functions. I hope this means
> something to you and that you can help.
> Thanks in advance
> Zilore
>
>
> On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > Thank you for attaching your log files. I did not see any errors
in your
> > make-install.log. Perhaps you ran make install in the following
way:
> >
> > make install > make-install.log
> >
> > This would catch standard out but not standard error.
> >
> > Could you please try running in the following way with the &,
which will
> > also capture standard error?
> >
> > make install >& make-install.log
> >
> > And, then please send me the output of that log. Thank you!
> >
> > Julie
> >
> > On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT
<met_help at ucar.edu>
> > wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> >>
> >> Julie,
> >> Thank you very much for your assistance. I failed to install
Cairo and
> >> freetype because of the dependencies. I will try again with the
links
> >> you sent me.
> >> Please find attached my config.log and make-install.log.
> >>
> >>
> >> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> >> > I'm so glad you were able to get MET installed and that you
worked out
> >> the
> >> > issue with the NetCDF environment variables.
> >> >
> >> > You mentioned that three executables did not build. I would
like to
> >> > try
> >> to
> >> > help with those. The modis_regrid tool has library
dependencies - it
> >> > requires the HDF4 and HDF-EOS2 libraries. The plot_mode_field
tool
> >> > also
> >> > has library dependencies - it requires the Cairo and FreeType
> >> > libraries.
> >> >
> >> > You can find information on compiling each of those library
> >> > dependencies
> >> > here:
> >> >
> >>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >> >
> >> > You can find information on setting the up necessary
environment
> >> variables
> >> > for those library locations here:
> >> >
> >>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> >> >
> >> > And with pb2nc, I'm not exactly sure what is going on there. I
would
> >> > be
> >> > happy to take a look at your configure log and make install log
files
> >> > to
> >> > see if I can figure out why you didn't get the executable.
> >> >
> >> > I hope this helps.
> >> >
> >> > Thanks,
> >> > Julie
> >> >
> >> >
> >> >
> >> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
> >> > <met_help at ucar.edu>
> >> > wrote:
> >> >
> >> >>
> >> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
>
> >> >>
> >> >> Julg
> >> >> Thank you very much for your help. With the advice you gave
me, I was
> >> >> able to install MET using gcc and gfortran. I also had to to
point
> >> >> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-
4.1.3/lib and
> >> >> include. Previously I pointed only to /usr/local/netcdf-4.1.3.
> >> >> I have three executables not included though, these are
modis_regrid,
> >> >> plot_mode_field and pb2nc.
> >> >> Thank you very much.
> >> >>
> >> >>
> >> >> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> >> >> > I am sorry to hear that you are having problems installing
METv5.0.
> >> >> > I
> >> >> > believe this error may have to do with how you compiled
BUFRLIB.
> >> >> > Please
> >> >> > take a look at the sample commands for compiling BURFLIB on
this
> >> >> > page:
> >> >> >
> >> >>
> >>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >> >> >
> >> >> > I believe that the *-fno-second-underscore* (GNU compilers)
or
> >> >> > *-Mnosecond_underscore* (PGI compilers) will fix the error
you're
> >> >> > seeing.
> >> >> >
> >> >> > I hope that helps. If it doesn't, please send me the files
> >> >> "make_met.log"
> >> >> > and "config.log".
> >> >> >
> >> >> > Thanks,
> >> >> > Julie
> >> >> >
> >> >> >
> >> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
> >> >> > <met_help at ucar.edu>
> >> >> > wrote:
> >> >> >
> >> >> >>
> >> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
> >> >> >> Transaction: Ticket created by zmumba at gmail.com
> >> >> >> Queue: met_help
> >> >> >> Subject: Problem compiling Met-V5
> >> >> >> Owner: Nobody
> >> >> >> Requestors: zmumba at gmail.com
> >> >> >> Status: new
> >> >> >> Ticket <URL:
> >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> >> >> >> >
> >> >> >>
> >> >> >>
> >> >> >> I have installed BUFRLIB, GSL and G2CLIB
> >> >> >> But then how do I handle the errors below in installing
MET_V5?
> >> >> >>
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> >> >> >> undefined
> >> >> >> reference to `ufbtab_'
> >> >> >> openpb.o: In function `openpb_':
> >> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
> >> >> >> undefined
> >> >> >> reference to `openbf_'
> >> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
> >> >> >> undefined
> >> >> >> reference to `datelen_'
> >> >> >> closepb.o: In function `closepb_':
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/closepb.f:19:
> >> undefined
> >> >> >> reference to `closbf_'
> >> >> >> readpb.o: In function `readpb_':
> >> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
> >> >> >> undefined
> >> >> >> reference to `ireadns_'
> >> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
> >> >> >> undefined
> >> >> >> reference to `ufbint_'
> >> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
> >> >> >> undefined
> >> >> >> reference to `ufbevn_'
> >> >> >> dumppb.o: In function `readpbdump_':
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:215:
> >> undefined
> >> >> >> reference to `ufbint_'
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:218:
> >> undefined
> >> >> >> reference to `ufbevn_'
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:224:
> >> undefined
> >> >> >> reference to `ireadns_'
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:203:
> >> undefined
> >> >> >> reference to `ireadns_'
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:228:
> >> undefined
> >> >> >> reference to `ufbint_'
> >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:259:
> >> undefined
> >> >> >> reference to `ufbevn_'
> >> >> >> dumppb.o: In function `dumppb_':
> >> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
> >> >> >> undefined
> >> >> >> reference to `openbf_'
> >> >> >> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
> >> >> >> undefined
> >> >> >> reference to `datelen_'
> >> >> >> collect2: error: ld returned 1 exit status
> >> >> >> make[4]: *** [pb2nc] Error 1
> >> >> >> make[4]: Leaving directory
> >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> >> >> >> make[3]: *** [install-recursive] Error 1
> >> >> >> make[3]: Leaving directory
> >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
> >> >> >> make[2]: *** [install-recursive] Error 1
> >> >> >> make[2]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools'
> >> >> >> make[1]: *** [install-recursive] Error 1
> >> >> >> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
> >> >> >> make: *** [install-recursive] Error 1
> >> >> >>
> >> >> >>
> >> >> >
> >> >> >
> >> >> > --
> >> >> > Julie Prestopnik
> >> >> > National Center for Atmospheric Research
> >> >> > Research Applications Laboratory
> >> >> > Phone: 303.497.8399
> >> >> > Email: jpresto at ucar.edu
> >> >> >
> >> >> >
> >> >>
> >> >>
> >> >
> >> >
> >> > --
> >> > Julie Prestopnik
> >> > National Center for Atmospheric Research
> >> > Research Applications Laboratory
> >> > Phone: 303.497.8399
> >> > Email: jpresto at ucar.edu
> >> >
> >> >
> >>
> >>
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Problem compiling Met-V5
From: Zilore Mumba
Time: Tue Mar 03 00:26:52 2015
Julie,
I did not inform you of the conclusion of my attempt to install Met-
5.1.
After making many attempts in reinstalling/reconfiguring BUFRLIB i
still
get errors relating to "undefined reference to ..." and eventually I
still
have 3 executables not installed: pb2nc, modis_regrid,
plot_mode_field.
I would like to learn how to use what I have and come back later to
pb2nc
if necessary. I will inform you if I have any other problems.
On Tue, Feb 10, 2015 at 7:12 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Thank you for rerunning and sending this log. Perhaps MET cannot
find the
> BUFR library.
>
> On the following page are directions for setting the environment
variables
> before compiling MET:
>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
>
> The rest of the applications built, so it looks like MET was able to
find
> the other needed libraries. The directions for the BUFR environment
> variable on the above page are:
>
> "Set *$MET_BUFR* to point to the main BUFR directory, or set
*$MET_BUFRLIB*
> to point to the directory with the BUFR library files. Because MET
doesn't
> use any BUFR library include files, you don't need to specify
> *$MET_BUFRINC*
> ."
>
> Please try setting either *$MET_BUFR *or *$MET_BUFRLIB *and then
please
> rerun the configure script and then rerun make install. It is
important to
> rerun configure before rerunning make install.
>
> Please let me know how it goes.
>
> Thanks,
> Julie
>
>
>
>
>
> On Sat, Feb 7, 2015 at 9:36 PM, Zilore Mumba via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> >
> > Julie,
> > Attached to this mail, please find the file make-install.log. It
does
> > show 'undefined reference' to some functions. I hope this means
> > something to you and that you can help.
> > Thanks in advance
> > Zilore
> >
> >
> > On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > > Thank you for attaching your log files. I did not see any
errors in
> your
> > > make-install.log. Perhaps you ran make install in the following
way:
> > >
> > > make install > make-install.log
> > >
> > > This would catch standard out but not standard error.
> > >
> > > Could you please try running in the following way with the &,
which
> will
> > > also capture standard error?
> > >
> > > make install >& make-install.log
> > >
> > > And, then please send me the output of that log. Thank you!
> > >
> > > Julie
> > >
> > > On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT
<met_help at ucar.edu
> >
> > > wrote:
> > >
> > >>
> > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > >>
> > >> Julie,
> > >> Thank you very much for your assistance. I failed to install
Cairo and
> > >> freetype because of the dependencies. I will try again with the
links
> > >> you sent me.
> > >> Please find attached my config.log and make-install.log.
> > >>
> > >>
> > >> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > >> > I'm so glad you were able to get MET installed and that you
worked
> out
> > >> the
> > >> > issue with the NetCDF environment variables.
> > >> >
> > >> > You mentioned that three executables did not build. I would
like to
> > >> > try
> > >> to
> > >> > help with those. The modis_regrid tool has library
dependencies -
> it
> > >> > requires the HDF4 and HDF-EOS2 libraries. The
plot_mode_field tool
> > >> > also
> > >> > has library dependencies - it requires the Cairo and FreeType
> > >> > libraries.
> > >> >
> > >> > You can find information on compiling each of those library
> > >> > dependencies
> > >> > here:
> > >> >
> > >>
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > >> >
> > >> > You can find information on setting the up necessary
environment
> > >> variables
> > >> > for those library locations here:
> > >> >
> > >>
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > >> >
> > >> > And with pb2nc, I'm not exactly sure what is going on there.
I
> would
> > >> > be
> > >> > happy to take a look at your configure log and make install
log
> files
> > >> > to
> > >> > see if I can figure out why you didn't get the executable.
> > >> >
> > >> > I hope this helps.
> > >> >
> > >> > Thanks,
> > >> > Julie
> > >> >
> > >> >
> > >> >
> > >> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
> > >> > <met_help at ucar.edu>
> > >> > wrote:
> > >> >
> > >> >>
> > >> >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > >> >>
> > >> >> Julg
> > >> >> Thank you very much for your help. With the advice you gave
me, I
> was
> > >> >> able to install MET using gcc and gfortran. I also had to to
point
> > >> >> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-
4.1.3/lib
> and
> > >> >> include. Previously I pointed only to /usr/local/netcdf-
4.1.3.
> > >> >> I have three executables not included though, these are
> modis_regrid,
> > >> >> plot_mode_field and pb2nc.
> > >> >> Thank you very much.
> > >> >>
> > >> >>
> > >> >> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > >> >> > I am sorry to hear that you are having problems installing
> METv5.0.
> > >> >> > I
> > >> >> > believe this error may have to do with how you compiled
BUFRLIB.
> > >> >> > Please
> > >> >> > take a look at the sample commands for compiling BURFLIB
on this
> > >> >> > page:
> > >> >> >
> > >> >>
> > >>
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > >> >> >
> > >> >> > I believe that the *-fno-second-underscore* (GNU
compilers) or
> > >> >> > *-Mnosecond_underscore* (PGI compilers) will fix the error
you're
> > >> >> > seeing.
> > >> >> >
> > >> >> > I hope that helps. If it doesn't, please send me the
files
> > >> >> "make_met.log"
> > >> >> > and "config.log".
> > >> >> >
> > >> >> > Thanks,
> > >> >> > Julie
> > >> >> >
> > >> >> >
> > >> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
> > >> >> > <met_help at ucar.edu>
> > >> >> > wrote:
> > >> >> >
> > >> >> >>
> > >> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
> > >> >> >> Transaction: Ticket created by zmumba at gmail.com
> > >> >> >> Queue: met_help
> > >> >> >> Subject: Problem compiling Met-V5
> > >> >> >> Owner: Nobody
> > >> >> >> Requestors: zmumba at gmail.com
> > >> >> >> Status: new
> > >> >> >> Ticket <URL:
> > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > >> >> >> >
> > >> >> >>
> > >> >> >>
> > >> >> >> I have installed BUFRLIB, GSL and G2CLIB
> > >> >> >> But then how do I handle the errors below in installing
MET_V5?
> > >> >> >>
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> > >> >> >> undefined
> > >> >> >> reference to `ufbtab_'
> > >> >> >> openpb.o: In function `openpb_':
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/openpb.f:21:
> > >> >> >> undefined
> > >> >> >> reference to `openbf_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/openpb.f:22:
> > >> >> >> undefined
> > >> >> >> reference to `datelen_'
> > >> >> >> closepb.o: In function `closepb_':
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/closepb.f:19:
> > >> undefined
> > >> >> >> reference to `closbf_'
> > >> >> >> readpb.o: In function `readpb_':
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:82:
> > >> >> >> undefined
> > >> >> >> reference to `ireadns_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:90:
> > >> >> >> undefined
> > >> >> >> reference to `ufbint_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:94:
> > >> >> >> undefined
> > >> >> >> reference to `ufbevn_'
> > >> >> >> dumppb.o: In function `readpbdump_':
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:215:
> > >> undefined
> > >> >> >> reference to `ufbint_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:218:
> > >> undefined
> > >> >> >> reference to `ufbevn_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:224:
> > >> undefined
> > >> >> >> reference to `ireadns_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:203:
> > >> undefined
> > >> >> >> reference to `ireadns_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:228:
> > >> undefined
> > >> >> >> reference to `ufbint_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:259:
> > >> undefined
> > >> >> >> reference to `ufbevn_'
> > >> >> >> dumppb.o: In function `dumppb_':
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:56:
> > >> >> >> undefined
> > >> >> >> reference to `openbf_'
> > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:57:
> > >> >> >> undefined
> > >> >> >> reference to `datelen_'
> > >> >> >> collect2: error: ld returned 1 exit status
> > >> >> >> make[4]: *** [pb2nc] Error 1
> > >> >> >> make[4]: Leaving directory
> > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> > >> >> >> make[3]: *** [install-recursive] Error 1
> > >> >> >> make[3]: Leaving directory
> > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
> > >> >> >> make[2]: *** [install-recursive] Error 1
> > >> >> >> make[2]: Leaving directory `/home/zmumba/WRF/met-
5.0/src/tools'
> > >> >> >> make[1]: *** [install-recursive] Error 1
> > >> >> >> make[1]: Leaving directory `/home/zmumba/WRF/met-5.0/src'
> > >> >> >> make: *** [install-recursive] Error 1
> > >> >> >>
> > >> >> >>
> > >> >> >
> > >> >> >
> > >> >> > --
> > >> >> > Julie Prestopnik
> > >> >> > National Center for Atmospheric Research
> > >> >> > Research Applications Laboratory
> > >> >> > Phone: 303.497.8399
> > >> >> > Email: jpresto at ucar.edu
> > >> >> >
> > >> >> >
> > >> >>
> > >> >>
> > >> >
> > >> >
> > >> > --
> > >> > Julie Prestopnik
> > >> > National Center for Atmospheric Research
> > >> > Research Applications Laboratory
> > >> > Phone: 303.497.8399
> > >> > Email: jpresto at ucar.edu
> > >> >
> > >> >
> > >>
> > >>
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: Problem compiling Met-V5
From: Julie Prestopnik
Time: Tue Mar 03 10:10:25 2015
I'm sorry to hear that you are still experiencing problems installing
METv5.0.
Specifically regarding BUFRLIB, please compile it using the options
listed
on this page:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
Failing to use the "-DUNDERSCORE -fno-second-underscore" (for GNU
compilers) options will result in undefined references when building
the
pb2nc tool.
If you'd like to send us the output of make please do the following:
make clean
make install >& make_install.log
And then send us the files "config.log" and "make_install.log".
I hope you'll find what you have been able to install useful. Please
let
us know if you have any questions.
Thanks,
Julie
On Tue, Mar 3, 2015 at 12:26 AM, Zilore Mumba via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>
> Julie,
> I did not inform you of the conclusion of my attempt to install Met-
5.1.
> After making many attempts in reinstalling/reconfiguring BUFRLIB i
still
> get errors relating to "undefined reference to ..." and eventually I
still
> have 3 executables not installed: pb2nc, modis_regrid,
plot_mode_field.
> I would like to learn how to use what I have and come back later to
pb2nc
> if necessary. I will inform you if I have any other problems.
>
>
> On Tue, Feb 10, 2015 at 7:12 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Thank you for rerunning and sending this log. Perhaps MET cannot
find
> the
> > BUFR library.
> >
> > On the following page are directions for setting the environment
> variables
> > before compiling MET:
> >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> >
> > The rest of the applications built, so it looks like MET was able
to find
> > the other needed libraries. The directions for the BUFR
environment
> > variable on the above page are:
> >
> > "Set *$MET_BUFR* to point to the main BUFR directory, or set
> *$MET_BUFRLIB*
> > to point to the directory with the BUFR library files. Because MET
> doesn't
> > use any BUFR library include files, you don't need to specify
> > *$MET_BUFRINC*
> > ."
> >
> > Please try setting either *$MET_BUFR *or *$MET_BUFRLIB *and then
please
> > rerun the configure script and then rerun make install. It is
important
> to
> > rerun configure before rerunning make install.
> >
> > Please let me know how it goes.
> >
> > Thanks,
> > Julie
> >
> >
> >
> >
> >
> > On Sat, Feb 7, 2015 at 9:36 PM, Zilore Mumba via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > >
> > > Julie,
> > > Attached to this mail, please find the file make-install.log. It
does
> > > show 'undefined reference' to some functions. I hope this means
> > > something to you and that you can help.
> > > Thanks in advance
> > > Zilore
> > >
> > >
> > > On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > > > Thank you for attaching your log files. I did not see any
errors in
> > your
> > > > make-install.log. Perhaps you ran make install in the
following way:
> > > >
> > > > make install > make-install.log
> > > >
> > > > This would catch standard out but not standard error.
> > > >
> > > > Could you please try running in the following way with the &,
which
> > will
> > > > also capture standard error?
> > > >
> > > > make install >& make-install.log
> > > >
> > > > And, then please send me the output of that log. Thank you!
> > > >
> > > > Julie
> > > >
> > > > On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT <
> met_help at ucar.edu
> > >
> > > > wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
>
> > > >>
> > > >> Julie,
> > > >> Thank you very much for your assistance. I failed to install
Cairo
> and
> > > >> freetype because of the dependencies. I will try again with
the
> links
> > > >> you sent me.
> > > >> Please find attached my config.log and make-install.log.
> > > >>
> > > >>
> > > >> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > > >> > I'm so glad you were able to get MET installed and that you
worked
> > out
> > > >> the
> > > >> > issue with the NetCDF environment variables.
> > > >> >
> > > >> > You mentioned that three executables did not build. I
would like
> to
> > > >> > try
> > > >> to
> > > >> > help with those. The modis_regrid tool has library
dependencies -
> > it
> > > >> > requires the HDF4 and HDF-EOS2 libraries. The
plot_mode_field
> tool
> > > >> > also
> > > >> > has library dependencies - it requires the Cairo and
FreeType
> > > >> > libraries.
> > > >> >
> > > >> > You can find information on compiling each of those library
> > > >> > dependencies
> > > >> > here:
> > > >> >
> > > >>
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > >> >
> > > >> > You can find information on setting the up necessary
environment
> > > >> variables
> > > >> > for those library locations here:
> > > >> >
> > > >>
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > >> >
> > > >> > And with pb2nc, I'm not exactly sure what is going on
there. I
> > would
> > > >> > be
> > > >> > happy to take a look at your configure log and make install
log
> > files
> > > >> > to
> > > >> > see if I can figure out why you didn't get the executable.
> > > >> >
> > > >> > I hope this helps.
> > > >> >
> > > >> > Thanks,
> > > >> > Julie
> > > >> >
> > > >> >
> > > >> >
> > > >> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
> > > >> > <met_help at ucar.edu>
> > > >> > wrote:
> > > >> >
> > > >> >>
> > > >> >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > > >> >>
> > > >> >> Julg
> > > >> >> Thank you very much for your help. With the advice you
gave me, I
> > was
> > > >> >> able to install MET using gcc and gfortran. I also had to
to
> point
> > > >> >> $MET_NETCDFLIB and, $MET_NETCDFINC to /usr/local/netcdf-
4.1.3/lib
> > and
> > > >> >> include. Previously I pointed only to /usr/local/netcdf-
4.1.3.
> > > >> >> I have three executables not included though, these are
> > modis_regrid,
> > > >> >> plot_mode_field and pb2nc.
> > > >> >> Thank you very much.
> > > >> >>
> > > >> >>
> > > >> >> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > >> >> > I am sorry to hear that you are having problems
installing
> > METv5.0.
> > > >> >> > I
> > > >> >> > believe this error may have to do with how you compiled
> BUFRLIB.
> > > >> >> > Please
> > > >> >> > take a look at the sample commands for compiling BURFLIB
on
> this
> > > >> >> > page:
> > > >> >> >
> > > >> >>
> > > >>
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > >> >> >
> > > >> >> > I believe that the *-fno-second-underscore* (GNU
compilers) or
> > > >> >> > *-Mnosecond_underscore* (PGI compilers) will fix the
error
> you're
> > > >> >> > seeing.
> > > >> >> >
> > > >> >> > I hope that helps. If it doesn't, please send me the
files
> > > >> >> "make_met.log"
> > > >> >> > and "config.log".
> > > >> >> >
> > > >> >> > Thanks,
> > > >> >> > Julie
> > > >> >> >
> > > >> >> >
> > > >> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
> > > >> >> > <met_help at ucar.edu>
> > > >> >> > wrote:
> > > >> >> >
> > > >> >> >>
> > > >> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted upon.
> > > >> >> >> Transaction: Ticket created by zmumba at gmail.com
> > > >> >> >> Queue: met_help
> > > >> >> >> Subject: Problem compiling Met-V5
> > > >> >> >> Owner: Nobody
> > > >> >> >> Requestors: zmumba at gmail.com
> > > >> >> >> Status: new
> > > >> >> >> Ticket <URL:
> > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > > >> >> >> >
> > > >> >> >>
> > > >> >> >>
> > > >> >> >> I have installed BUFRLIB, GSL and G2CLIB
> > > >> >> >> But then how do I handle the errors below in installing
> MET_V5?
> > > >> >> >>
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> > > >> >> >> undefined
> > > >> >> >> reference to `ufbtab_'
> > > >> >> >> openpb.o: In function `openpb_':
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/openpb.f:21:
> > > >> >> >> undefined
> > > >> >> >> reference to `openbf_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/openpb.f:22:
> > > >> >> >> undefined
> > > >> >> >> reference to `datelen_'
> > > >> >> >> closepb.o: In function `closepb_':
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/closepb.f:19:
> > > >> undefined
> > > >> >> >> reference to `closbf_'
> > > >> >> >> readpb.o: In function `readpb_':
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:82:
> > > >> >> >> undefined
> > > >> >> >> reference to `ireadns_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:90:
> > > >> >> >> undefined
> > > >> >> >> reference to `ufbint_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:94:
> > > >> >> >> undefined
> > > >> >> >> reference to `ufbevn_'
> > > >> >> >> dumppb.o: In function `readpbdump_':
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:215:
> > > >> undefined
> > > >> >> >> reference to `ufbint_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:218:
> > > >> undefined
> > > >> >> >> reference to `ufbevn_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:224:
> > > >> undefined
> > > >> >> >> reference to `ireadns_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:203:
> > > >> undefined
> > > >> >> >> reference to `ireadns_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:228:
> > > >> undefined
> > > >> >> >> reference to `ufbint_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:259:
> > > >> undefined
> > > >> >> >> reference to `ufbevn_'
> > > >> >> >> dumppb.o: In function `dumppb_':
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:56:
> > > >> >> >> undefined
> > > >> >> >> reference to `openbf_'
> > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:57:
> > > >> >> >> undefined
> > > >> >> >> reference to `datelen_'
> > > >> >> >> collect2: error: ld returned 1 exit status
> > > >> >> >> make[4]: *** [pb2nc] Error 1
> > > >> >> >> make[4]: Leaving directory
> > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> > > >> >> >> make[3]: *** [install-recursive] Error 1
> > > >> >> >> make[3]: Leaving directory
> > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
> > > >> >> >> make[2]: *** [install-recursive] Error 1
> > > >> >> >> make[2]: Leaving directory
> `/home/zmumba/WRF/met-5.0/src/tools'
> > > >> >> >> make[1]: *** [install-recursive] Error 1
> > > >> >> >> make[1]: Leaving directory `/home/zmumba/WRF/met-
5.0/src'
> > > >> >> >> make: *** [install-recursive] Error 1
> > > >> >> >>
> > > >> >> >>
> > > >> >> >
> > > >> >> >
> > > >> >> > --
> > > >> >> > Julie Prestopnik
> > > >> >> > National Center for Atmospheric Research
> > > >> >> > Research Applications Laboratory
> > > >> >> > Phone: 303.497.8399
> > > >> >> > Email: jpresto at ucar.edu
> > > >> >> >
> > > >> >> >
> > > >> >>
> > > >> >>
> > > >> >
> > > >> >
> > > >> > --
> > > >> > Julie Prestopnik
> > > >> > National Center for Atmospheric Research
> > > >> > Research Applications Laboratory
> > > >> > Phone: 303.497.8399
> > > >> > Email: jpresto at ucar.edu
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Problem compiling Met-V5
From: Zilore Mumba
Time: Wed Mar 04 05:36:38 2015
*Julie, I installed with the following commands. gcc -c -DUNDERSCORE
*.c*
*gfortran -c -DUNDERSCORE -fno-second-underscore *.f *.F*
*ar crv libbufr.a *.o*
*Please find attached the config.log and make_install.log *
On Tue, Mar 3, 2015 at 7:10 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> I'm sorry to hear that you are still experiencing problems
installing
> METv5.0.
>
> Specifically regarding BUFRLIB, please compile it using the options
listed
> on this page:
>
>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>
> Failing to use the "-DUNDERSCORE -fno-second-underscore" (for GNU
> compilers) options will result in undefined references when building
the
> pb2nc tool.
>
> If you'd like to send us the output of make please do the following:
> make clean
> make install >& make_install.log
>
> And then send us the files "config.log" and "make_install.log".
>
> I hope you'll find what you have been able to install useful.
Please let
> us know if you have any questions.
>
> Thanks,
> Julie
>
> On Tue, Mar 3, 2015 at 12:26 AM, Zilore Mumba via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> >
> > Julie,
> > I did not inform you of the conclusion of my attempt to install
Met-5.1.
> > After making many attempts in reinstalling/reconfiguring BUFRLIB i
still
> > get errors relating to "undefined reference to ..." and eventually
I
> still
> > have 3 executables not installed: pb2nc, modis_regrid,
plot_mode_field.
> > I would like to learn how to use what I have and come back later
to pb2nc
> > if necessary. I will inform you if I have any other problems.
> >
> >
> > On Tue, Feb 10, 2015 at 7:12 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Thank you for rerunning and sending this log. Perhaps MET
cannot find
> > the
> > > BUFR library.
> > >
> > > On the following page are directions for setting the environment
> > variables
> > > before compiling MET:
> > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > >
> > > The rest of the applications built, so it looks like MET was
able to
> find
> > > the other needed libraries. The directions for the BUFR
environment
> > > variable on the above page are:
> > >
> > > "Set *$MET_BUFR* to point to the main BUFR directory, or set
> > *$MET_BUFRLIB*
> > > to point to the directory with the BUFR library files. Because
MET
> > doesn't
> > > use any BUFR library include files, you don't need to specify
> > > *$MET_BUFRINC*
> > > ."
> > >
> > > Please try setting either *$MET_BUFR *or *$MET_BUFRLIB *and then
please
> > > rerun the configure script and then rerun make install. It is
> important
> > to
> > > rerun configure before rerunning make install.
> > >
> > > Please let me know how it goes.
> > >
> > > Thanks,
> > > Julie
> > >
> > >
> > >
> > >
> > >
> > > On Sat, Feb 7, 2015 at 9:36 PM, Zilore Mumba via RT
<met_help at ucar.edu
> >
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
>
> > > >
> > > > Julie,
> > > > Attached to this mail, please find the file make-install.log.
It does
> > > > show 'undefined reference' to some functions. I hope this
means
> > > > something to you and that you can help.
> > > > Thanks in advance
> > > > Zilore
> > > >
> > > >
> > > > On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu> wrote:
> > > > > Thank you for attaching your log files. I did not see any
errors
> in
> > > your
> > > > > make-install.log. Perhaps you ran make install in the
following
> way:
> > > > >
> > > > > make install > make-install.log
> > > > >
> > > > > This would catch standard out but not standard error.
> > > > >
> > > > > Could you please try running in the following way with the
&, which
> > > will
> > > > > also capture standard error?
> > > > >
> > > > > make install >& make-install.log
> > > > >
> > > > > And, then please send me the output of that log. Thank you!
> > > > >
> > > > > Julie
> > > > >
> > > > > On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT <
> > met_help at ucar.edu
> > > >
> > > > > wrote:
> > > > >
> > > > >>
> > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > > > >>
> > > > >> Julie,
> > > > >> Thank you very much for your assistance. I failed to
install Cairo
> > and
> > > > >> freetype because of the dependencies. I will try again with
the
> > links
> > > > >> you sent me.
> > > > >> Please find attached my config.log and make-install.log.
> > > > >>
> > > > >>
> > > > >> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > > >> > I'm so glad you were able to get MET installed and that
you
> worked
> > > out
> > > > >> the
> > > > >> > issue with the NetCDF environment variables.
> > > > >> >
> > > > >> > You mentioned that three executables did not build. I
would
> like
> > to
> > > > >> > try
> > > > >> to
> > > > >> > help with those. The modis_regrid tool has library
> dependencies -
> > > it
> > > > >> > requires the HDF4 and HDF-EOS2 libraries. The
plot_mode_field
> > tool
> > > > >> > also
> > > > >> > has library dependencies - it requires the Cairo and
FreeType
> > > > >> > libraries.
> > > > >> >
> > > > >> > You can find information on compiling each of those
library
> > > > >> > dependencies
> > > > >> > here:
> > > > >> >
> > > > >>
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > >> >
> > > > >> > You can find information on setting the up necessary
environment
> > > > >> variables
> > > > >> > for those library locations here:
> > > > >> >
> > > > >>
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > > >> >
> > > > >> > And with pb2nc, I'm not exactly sure what is going on
there. I
> > > would
> > > > >> > be
> > > > >> > happy to take a look at your configure log and make
install log
> > > files
> > > > >> > to
> > > > >> > see if I can figure out why you didn't get the
executable.
> > > > >> >
> > > > >> > I hope this helps.
> > > > >> >
> > > > >> > Thanks,
> > > > >> > Julie
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
> > > > >> > <met_help at ucar.edu>
> > > > >> > wrote:
> > > > >> >
> > > > >> >>
> > > > >> >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> >
> > > > >> >>
> > > > >> >> Julg
> > > > >> >> Thank you very much for your help. With the advice you
gave
> me, I
> > > was
> > > > >> >> able to install MET using gcc and gfortran. I also had
to to
> > point
> > > > >> >> $MET_NETCDFLIB and, $MET_NETCDFINC to
> /usr/local/netcdf-4.1.3/lib
> > > and
> > > > >> >> include. Previously I pointed only to /usr/local/netcdf-
4.1.3.
> > > > >> >> I have three executables not included though, these are
> > > modis_regrid,
> > > > >> >> plot_mode_field and pb2nc.
> > > > >> >> Thank you very much.
> > > > >> >>
> > > > >> >>
> > > > >> >> On 1/29/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > > >> >> > I am sorry to hear that you are having problems
installing
> > > METv5.0.
> > > > >> >> > I
> > > > >> >> > believe this error may have to do with how you
compiled
> > BUFRLIB.
> > > > >> >> > Please
> > > > >> >> > take a look at the sample commands for compiling
BURFLIB on
> > this
> > > > >> >> > page:
> > > > >> >> >
> > > > >> >>
> > > > >>
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > >> >> >
> > > > >> >> > I believe that the *-fno-second-underscore* (GNU
compilers)
> or
> > > > >> >> > *-Mnosecond_underscore* (PGI compilers) will fix the
error
> > you're
> > > > >> >> > seeing.
> > > > >> >> >
> > > > >> >> > I hope that helps. If it doesn't, please send me the
files
> > > > >> >> "make_met.log"
> > > > >> >> > and "config.log".
> > > > >> >> >
> > > > >> >> > Thanks,
> > > > >> >> > Julie
> > > > >> >> >
> > > > >> >> >
> > > > >> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
> > > > >> >> > <met_help at ucar.edu>
> > > > >> >> > wrote:
> > > > >> >> >
> > > > >> >> >>
> > > > >> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted
upon.
> > > > >> >> >> Transaction: Ticket created by zmumba at gmail.com
> > > > >> >> >> Queue: met_help
> > > > >> >> >> Subject: Problem compiling Met-V5
> > > > >> >> >> Owner: Nobody
> > > > >> >> >> Requestors: zmumba at gmail.com
> > > > >> >> >> Status: new
> > > > >> >> >> Ticket <URL:
> > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > > > >> >> >> >
> > > > >> >> >>
> > > > >> >> >>
> > > > >> >> >> I have installed BUFRLIB, GSL and G2CLIB
> > > > >> >> >> But then how do I handle the errors below in
installing
> > MET_V5?
> > > > >> >> >>
> > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `ufbtab_'
> > > > >> >> >> openpb.o: In function `openpb_':
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/openpb.f:21:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `openbf_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/openpb.f:22:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `datelen_'
> > > > >> >> >> closepb.o: In function `closepb_':
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/closepb.f:19:
> > > > >> undefined
> > > > >> >> >> reference to `closbf_'
> > > > >> >> >> readpb.o: In function `readpb_':
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:82:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `ireadns_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:90:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `ufbint_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/readpb.f:94:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `ufbevn_'
> > > > >> >> >> dumppb.o: In function `readpbdump_':
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:215:
> > > > >> undefined
> > > > >> >> >> reference to `ufbint_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:218:
> > > > >> undefined
> > > > >> >> >> reference to `ufbevn_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:224:
> > > > >> undefined
> > > > >> >> >> reference to `ireadns_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:203:
> > > > >> undefined
> > > > >> >> >> reference to `ireadns_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:228:
> > > > >> undefined
> > > > >> >> >> reference to `ufbint_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:259:
> > > > >> undefined
> > > > >> >> >> reference to `ufbevn_'
> > > > >> >> >> dumppb.o: In function `dumppb_':
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:56:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `openbf_'
> > > > >> >> >> /home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc/dumppb.f:57:
> > > > >> >> >> undefined
> > > > >> >> >> reference to `datelen_'
> > > > >> >> >> collect2: error: ld returned 1 exit status
> > > > >> >> >> make[4]: *** [pb2nc] Error 1
> > > > >> >> >> make[4]: Leaving directory
> > > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> > > > >> >> >> make[3]: *** [install-recursive] Error 1
> > > > >> >> >> make[3]: Leaving directory
> > > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
> > > > >> >> >> make[2]: *** [install-recursive] Error 1
> > > > >> >> >> make[2]: Leaving directory
> > `/home/zmumba/WRF/met-5.0/src/tools'
> > > > >> >> >> make[1]: *** [install-recursive] Error 1
> > > > >> >> >> make[1]: Leaving directory `/home/zmumba/WRF/met-
5.0/src'
> > > > >> >> >> make: *** [install-recursive] Error 1
> > > > >> >> >>
> > > > >> >> >>
> > > > >> >> >
> > > > >> >> >
> > > > >> >> > --
> > > > >> >> > Julie Prestopnik
> > > > >> >> > National Center for Atmospheric Research
> > > > >> >> > Research Applications Laboratory
> > > > >> >> > Phone: 303.497.8399
> > > > >> >> > Email: jpresto at ucar.edu
> > > > >> >> >
> > > > >> >> >
> > > > >> >>
> > > > >> >>
> > > > >> >
> > > > >> >
> > > > >> > --
> > > > >> > Julie Prestopnik
> > > > >> > National Center for Atmospheric Research
> > > > >> > Research Applications Laboratory
> > > > >> > Phone: 303.497.8399
> > > > >> > Email: jpresto at ucar.edu
> > > > >> >
> > > > >> >
> > > > >>
> > > > >>
> > > > >
> > > > >
> > > > > --
> > > > > Julie Prestopnik
> > > > > National Center for Atmospheric Research
> > > > > Research Applications Laboratory
> > > > > Phone: 303.497.8399
> > > > > Email: jpresto at ucar.edu
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: Problem compiling Met-V5
From: Julie Prestopnik
Time: Thu Mar 05 10:59:52 2015
Hi Zilore. Thanks for sending your commands and log files.
Looking in "config.log" for the string "BUFRLIB", it appears that you
did
not set the environment variable.
The linker error occurs on line 1057 of make_install.log. Looking at
that
line, we're telling the linker to look in the following directories
for the
file named "libbufr.a":
-L/usr/lib/gcc/i686-linux-gnu/4.8
-L/usr/lib/gcc/i686-linux-gnu/4.8/../../../i386-linux-gnu
-L/usr/lib/gcc/i686-linux-gnu/4.8/../../../../lib
-L/lib/i386-linux-gnu
-L/lib/../lib
-L/usr/lib/i386-linux-gnu
-L/usr/lib/../lib
-L/usr/lib/gcc/i686-linux-gnu/4.8/../../..
It must be finding libbufr.a in one of those directories, otherwise we
would get an error about that. I believe that the version of
libbufr.a it
is finding is not the version that you compiled using the "-
DUNDERSCORE"
option.
I was able to replicate your error by re-compiling a version of
BUFRLIB
*without* -DUNDERSCORE, and then by building MET linking to that bad
version.
What you'll need to do is set the MET_BUFRLIB environment variable as
indicated on this page:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
Then source your .cshrc or equivalent file, then run your configure
command, and then run make install and make test.
Please give that a try. It should solve the problem you are
encountering.
Thanks,
Julie
On Wed, Mar 4, 2015 at 5:36 AM, Zilore Mumba via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>
> *Julie, I installed with the following commands. gcc -c -DUNDERSCORE
*.c*
> *gfortran -c -DUNDERSCORE -fno-second-underscore *.f *.F*
> *ar crv libbufr.a *.o*
>
>
>
> *Please find attached the config.log and make_install.log *
>
>
> On Tue, Mar 3, 2015 at 7:10 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> >
> wrote:
>
> > I'm sorry to hear that you are still experiencing problems
installing
> > METv5.0.
> >
> > Specifically regarding BUFRLIB, please compile it using the
options
> listed
> > on this page:
> >
> >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >
> > Failing to use the "-DUNDERSCORE -fno-second-underscore" (for GNU
> > compilers) options will result in undefined references when
building the
> > pb2nc tool.
> >
> > If you'd like to send us the output of make please do the
following:
> > make clean
> > make install >& make_install.log
> >
> > And then send us the files "config.log" and "make_install.log".
> >
> > I hope you'll find what you have been able to install useful.
Please let
> > us know if you have any questions.
> >
> > Thanks,
> > Julie
> >
> > On Tue, Mar 3, 2015 at 12:26 AM, Zilore Mumba via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > >
> > > Julie,
> > > I did not inform you of the conclusion of my attempt to install
> Met-5.1.
> > > After making many attempts in reinstalling/reconfiguring BUFRLIB
i
> still
> > > get errors relating to "undefined reference to ..." and
eventually I
> > still
> > > have 3 executables not installed: pb2nc, modis_regrid,
plot_mode_field.
> > > I would like to learn how to use what I have and come back later
to
> pb2nc
> > > if necessary. I will inform you if I have any other problems.
> > >
> > >
> > > On Tue, Feb 10, 2015 at 7:12 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Thank you for rerunning and sending this log. Perhaps MET
cannot
> find
> > > the
> > > > BUFR library.
> > > >
> > > > On the following page are directions for setting the
environment
> > > variables
> > > > before compiling MET:
> > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > >
> > > > The rest of the applications built, so it looks like MET was
able to
> > find
> > > > the other needed libraries. The directions for the BUFR
environment
> > > > variable on the above page are:
> > > >
> > > > "Set *$MET_BUFR* to point to the main BUFR directory, or set
> > > *$MET_BUFRLIB*
> > > > to point to the directory with the BUFR library files. Because
MET
> > > doesn't
> > > > use any BUFR library include files, you don't need to specify
> > > > *$MET_BUFRINC*
> > > > ."
> > > >
> > > > Please try setting either *$MET_BUFR *or *$MET_BUFRLIB *and
then
> please
> > > > rerun the configure script and then rerun make install. It is
> > important
> > > to
> > > > rerun configure before rerunning make install.
> > > >
> > > > Please let me know how it goes.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > On Sat, Feb 7, 2015 at 9:36 PM, Zilore Mumba via RT <
> met_help at ucar.edu
> > >
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > > > >
> > > > > Julie,
> > > > > Attached to this mail, please find the file make-
install.log. It
> does
> > > > > show 'undefined reference' to some functions. I hope this
means
> > > > > something to you and that you can help.
> > > > > Thanks in advance
> > > > > Zilore
> > > > >
> > > > >
> > > > > On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > > > > Thank you for attaching your log files. I did not see any
errors
> > in
> > > > your
> > > > > > make-install.log. Perhaps you ran make install in the
following
> > way:
> > > > > >
> > > > > > make install > make-install.log
> > > > > >
> > > > > > This would catch standard out but not standard error.
> > > > > >
> > > > > > Could you please try running in the following way with the
&,
> which
> > > > will
> > > > > > also capture standard error?
> > > > > >
> > > > > > make install >& make-install.log
> > > > > >
> > > > > > And, then please send me the output of that log. Thank
you!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT <
> > > met_help at ucar.edu
> > > > >
> > > > > > wrote:
> > > > > >
> > > > > >>
> > > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > > > > >>
> > > > > >> Julie,
> > > > > >> Thank you very much for your assistance. I failed to
install
> Cairo
> > > and
> > > > > >> freetype because of the dependencies. I will try again
with the
> > > links
> > > > > >> you sent me.
> > > > > >> Please find attached my config.log and make-install.log.
> > > > > >>
> > > > > >>
> > > > > >> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > > > >> > I'm so glad you were able to get MET installed and that
you
> > worked
> > > > out
> > > > > >> the
> > > > > >> > issue with the NetCDF environment variables.
> > > > > >> >
> > > > > >> > You mentioned that three executables did not build. I
would
> > like
> > > to
> > > > > >> > try
> > > > > >> to
> > > > > >> > help with those. The modis_regrid tool has library
> > dependencies -
> > > > it
> > > > > >> > requires the HDF4 and HDF-EOS2 libraries. The
plot_mode_field
> > > tool
> > > > > >> > also
> > > > > >> > has library dependencies - it requires the Cairo and
FreeType
> > > > > >> > libraries.
> > > > > >> >
> > > > > >> > You can find information on compiling each of those
library
> > > > > >> > dependencies
> > > > > >> > here:
> > > > > >> >
> > > > > >>
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > >> >
> > > > > >> > You can find information on setting the up necessary
> environment
> > > > > >> variables
> > > > > >> > for those library locations here:
> > > > > >> >
> > > > > >>
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > > > >> >
> > > > > >> > And with pb2nc, I'm not exactly sure what is going on
there.
> I
> > > > would
> > > > > >> > be
> > > > > >> > happy to take a look at your configure log and make
install
> log
> > > > files
> > > > > >> > to
> > > > > >> > see if I can figure out why you didn't get the
executable.
> > > > > >> >
> > > > > >> > I hope this helps.
> > > > > >> >
> > > > > >> > Thanks,
> > > > > >> > Julie
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
> > > > > >> > <met_help at ucar.edu>
> > > > > >> > wrote:
> > > > > >> >
> > > > > >> >>
> > > > > >> >> <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > >
> > > > > >> >>
> > > > > >> >> Julg
> > > > > >> >> Thank you very much for your help. With the advice you
gave
> > me, I
> > > > was
> > > > > >> >> able to install MET using gcc and gfortran. I also had
to to
> > > point
> > > > > >> >> $MET_NETCDFLIB and, $MET_NETCDFINC to
> > /usr/local/netcdf-4.1.3/lib
> > > > and
> > > > > >> >> include. Previously I pointed only to
> /usr/local/netcdf-4.1.3.
> > > > > >> >> I have three executables not included though, these
are
> > > > modis_regrid,
> > > > > >> >> plot_mode_field and pb2nc.
> > > > > >> >> Thank you very much.
> > > > > >> >>
> > > > > >> >>
> > > > > >> >> On 1/29/15, Julie Prestopnik via RT
<met_help at ucar.edu>
> wrote:
> > > > > >> >> > I am sorry to hear that you are having problems
installing
> > > > METv5.0.
> > > > > >> >> > I
> > > > > >> >> > believe this error may have to do with how you
compiled
> > > BUFRLIB.
> > > > > >> >> > Please
> > > > > >> >> > take a look at the sample commands for compiling
BURFLIB on
> > > this
> > > > > >> >> > page:
> > > > > >> >> >
> > > > > >> >>
> > > > > >>
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > >> >> >
> > > > > >> >> > I believe that the *-fno-second-underscore* (GNU
compilers)
> > or
> > > > > >> >> > *-Mnosecond_underscore* (PGI compilers) will fix the
error
> > > you're
> > > > > >> >> > seeing.
> > > > > >> >> >
> > > > > >> >> > I hope that helps. If it doesn't, please send me
the files
> > > > > >> >> "make_met.log"
> > > > > >> >> > and "config.log".
> > > > > >> >> >
> > > > > >> >> > Thanks,
> > > > > >> >> > Julie
> > > > > >> >> >
> > > > > >> >> >
> > > > > >> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via RT
> > > > > >> >> > <met_help at ucar.edu>
> > > > > >> >> > wrote:
> > > > > >> >> >
> > > > > >> >> >>
> > > > > >> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted
upon.
> > > > > >> >> >> Transaction: Ticket created by zmumba at gmail.com
> > > > > >> >> >> Queue: met_help
> > > > > >> >> >> Subject: Problem compiling Met-V5
> > > > > >> >> >> Owner: Nobody
> > > > > >> >> >> Requestors: zmumba at gmail.com
> > > > > >> >> >> Status: new
> > > > > >> >> >> Ticket <URL:
> > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > > > > >> >> >> >
> > > > > >> >> >>
> > > > > >> >> >>
> > > > > >> >> >> I have installed BUFRLIB, GSL and G2CLIB
> > > > > >> >> >> But then how do I handle the errors below in
installing
> > > MET_V5?
> > > > > >> >> >>
> > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `ufbtab_'
> > > > > >> >> >> openpb.o: In function `openpb_':
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `openbf_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `datelen_'
> > > > > >> >> >> closepb.o: In function `closepb_':
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
> > > > > >> undefined
> > > > > >> >> >> reference to `closbf_'
> > > > > >> >> >> readpb.o: In function `readpb_':
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `ireadns_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `ufbint_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `ufbevn_'
> > > > > >> >> >> dumppb.o: In function `readpbdump_':
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
> > > > > >> undefined
> > > > > >> >> >> reference to `ufbint_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
> > > > > >> undefined
> > > > > >> >> >> reference to `ufbevn_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
> > > > > >> undefined
> > > > > >> >> >> reference to `ireadns_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
> > > > > >> undefined
> > > > > >> >> >> reference to `ireadns_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
> > > > > >> undefined
> > > > > >> >> >> reference to `ufbint_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
> > > > > >> undefined
> > > > > >> >> >> reference to `ufbevn_'
> > > > > >> >> >> dumppb.o: In function `dumppb_':
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `openbf_'
> > > > > >> >> >>
> /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
> > > > > >> >> >> undefined
> > > > > >> >> >> reference to `datelen_'
> > > > > >> >> >> collect2: error: ld returned 1 exit status
> > > > > >> >> >> make[4]: *** [pb2nc] Error 1
> > > > > >> >> >> make[4]: Leaving directory
> > > > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> > > > > >> >> >> make[3]: *** [install-recursive] Error 1
> > > > > >> >> >> make[3]: Leaving directory
> > > > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
> > > > > >> >> >> make[2]: *** [install-recursive] Error 1
> > > > > >> >> >> make[2]: Leaving directory
> > > `/home/zmumba/WRF/met-5.0/src/tools'
> > > > > >> >> >> make[1]: *** [install-recursive] Error 1
> > > > > >> >> >> make[1]: Leaving directory `/home/zmumba/WRF/met-
5.0/src'
> > > > > >> >> >> make: *** [install-recursive] Error 1
> > > > > >> >> >>
> > > > > >> >> >>
> > > > > >> >> >
> > > > > >> >> >
> > > > > >> >> > --
> > > > > >> >> > Julie Prestopnik
> > > > > >> >> > National Center for Atmospheric Research
> > > > > >> >> > Research Applications Laboratory
> > > > > >> >> > Phone: 303.497.8399
> > > > > >> >> > Email: jpresto at ucar.edu
> > > > > >> >> >
> > > > > >> >> >
> > > > > >> >>
> > > > > >> >>
> > > > > >> >
> > > > > >> >
> > > > > >> > --
> > > > > >> > Julie Prestopnik
> > > > > >> > National Center for Atmospheric Research
> > > > > >> > Research Applications Laboratory
> > > > > >> > Phone: 303.497.8399
> > > > > >> > Email: jpresto at ucar.edu
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Julie Prestopnik
> > > > > > National Center for Atmospheric Research
> > > > > > Research Applications Laboratory
> > > > > > Phone: 303.497.8399
> > > > > > Email: jpresto at ucar.edu
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Problem compiling Met-V5
From: Zilore Mumba
Time: Thu Mar 05 15:10:42 2015
Julie,
Thank you very much. The library was in none of the paths listed. Now
i
manged to have pb2nc installed.
Now I can concentrate on learning how to use the tool.
Thank you very much
On Thu, Mar 5, 2015 at 7:59 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hi Zilore. Thanks for sending your commands and log files.
>
> Looking in "config.log" for the string "BUFRLIB", it appears that
you did
> not set the environment variable.
>
> The linker error occurs on line 1057 of make_install.log. Looking
at that
> line, we're telling the linker to look in the following directories
for the
> file named "libbufr.a":
>
> -L/usr/lib/gcc/i686-linux-gnu/4.8
> -L/usr/lib/gcc/i686-linux-gnu/4.8/../../../i386-linux-gnu
> -L/usr/lib/gcc/i686-linux-gnu/4.8/../../../../lib
> -L/lib/i386-linux-gnu
> -L/lib/../lib
> -L/usr/lib/i386-linux-gnu
> -L/usr/lib/../lib
> -L/usr/lib/gcc/i686-linux-gnu/4.8/../../..
>
> It must be finding libbufr.a in one of those directories, otherwise
we
> would get an error about that. I believe that the version of
libbufr.a it
> is finding is not the version that you compiled using the "-
DUNDERSCORE"
> option.
>
> I was able to replicate your error by re-compiling a version of
BUFRLIB
> *without* -DUNDERSCORE, and then by building MET linking to that bad
> version.
>
> What you'll need to do is set the MET_BUFRLIB environment variable
as
> indicated on this page:
>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
>
> Then source your .cshrc or equivalent file, then run your configure
> command, and then run make install and make test.
>
> Please give that a try. It should solve the problem you are
encountering.
>
> Thanks,
> Julie
>
> On Wed, Mar 4, 2015 at 5:36 AM, Zilore Mumba via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> >
> > *Julie, I installed with the following commands. gcc -c
-DUNDERSCORE *.c*
> > *gfortran -c -DUNDERSCORE -fno-second-underscore *.f *.F*
> > *ar crv libbufr.a *.o*
> >
> >
> >
> > *Please find attached the config.log and make_install.log *
> >
> >
> > On Tue, Mar 3, 2015 at 7:10 PM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > >
> > wrote:
> >
> > > I'm sorry to hear that you are still experiencing problems
installing
> > > METv5.0.
> > >
> > > Specifically regarding BUFRLIB, please compile it using the
options
> > listed
> > > on this page:
> > >
> > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > >
> > > Failing to use the "-DUNDERSCORE -fno-second-underscore" (for
GNU
> > > compilers) options will result in undefined references when
building
> the
> > > pb2nc tool.
> > >
> > > If you'd like to send us the output of make please do the
following:
> > > make clean
> > > make install >& make_install.log
> > >
> > > And then send us the files "config.log" and "make_install.log".
> > >
> > > I hope you'll find what you have been able to install useful.
Please
> let
> > > us know if you have any questions.
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Tue, Mar 3, 2015 at 12:26 AM, Zilore Mumba via RT <
> met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
>
> > > >
> > > > Julie,
> > > > I did not inform you of the conclusion of my attempt to
install
> > Met-5.1.
> > > > After making many attempts in reinstalling/reconfiguring
BUFRLIB i
> > still
> > > > get errors relating to "undefined reference to ..." and
eventually I
> > > still
> > > > have 3 executables not installed: pb2nc, modis_regrid,
> plot_mode_field.
> > > > I would like to learn how to use what I have and come back
later to
> > pb2nc
> > > > if necessary. I will inform you if I have any other problems.
> > > >
> > > >
> > > > On Tue, Feb 10, 2015 at 7:12 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Thank you for rerunning and sending this log. Perhaps MET
cannot
> > find
> > > > the
> > > > > BUFR library.
> > > > >
> > > > > On the following page are directions for setting the
environment
> > > > variables
> > > > > before compiling MET:
> > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > > >
> > > > > The rest of the applications built, so it looks like MET was
able
> to
> > > find
> > > > > the other needed libraries. The directions for the BUFR
> environment
> > > > > variable on the above page are:
> > > > >
> > > > > "Set *$MET_BUFR* to point to the main BUFR directory, or set
> > > > *$MET_BUFRLIB*
> > > > > to point to the directory with the BUFR library files.
Because MET
> > > > doesn't
> > > > > use any BUFR library include files, you don't need to
specify
> > > > > *$MET_BUFRINC*
> > > > > ."
> > > > >
> > > > > Please try setting either *$MET_BUFR *or *$MET_BUFRLIB *and
then
> > please
> > > > > rerun the configure script and then rerun make install. It
is
> > > important
> > > > to
> > > > > rerun configure before rerunning make install.
> > > > >
> > > > > Please let me know how it goes.
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > On Sat, Feb 7, 2015 at 9:36 PM, Zilore Mumba via RT <
> > met_help at ucar.edu
> > > >
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > > > > >
> > > > > > Julie,
> > > > > > Attached to this mail, please find the file make-
install.log. It
> > does
> > > > > > show 'undefined reference' to some functions. I hope this
means
> > > > > > something to you and that you can help.
> > > > > > Thanks in advance
> > > > > > Zilore
> > > > > >
> > > > > >
> > > > > > On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > > > > > Thank you for attaching your log files. I did not see
any
> errors
> > > in
> > > > > your
> > > > > > > make-install.log. Perhaps you ran make install in the
> following
> > > way:
> > > > > > >
> > > > > > > make install > make-install.log
> > > > > > >
> > > > > > > This would catch standard out but not standard error.
> > > > > > >
> > > > > > > Could you please try running in the following way with
the &,
> > which
> > > > > will
> > > > > > > also capture standard error?
> > > > > > >
> > > > > > > make install >& make-install.log
> > > > > > >
> > > > > > > And, then please send me the output of that log. Thank
you!
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > >>
> > > > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> >
> > > > > > >>
> > > > > > >> Julie,
> > > > > > >> Thank you very much for your assistance. I failed to
install
> > Cairo
> > > > and
> > > > > > >> freetype because of the dependencies. I will try again
with
> the
> > > > links
> > > > > > >> you sent me.
> > > > > > >> Please find attached my config.log and make-
install.log.
> > > > > > >>
> > > > > > >>
> > > > > > >> On 2/2/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > > > > >> > I'm so glad you were able to get MET installed and
that you
> > > worked
> > > > > out
> > > > > > >> the
> > > > > > >> > issue with the NetCDF environment variables.
> > > > > > >> >
> > > > > > >> > You mentioned that three executables did not build.
I would
> > > like
> > > > to
> > > > > > >> > try
> > > > > > >> to
> > > > > > >> > help with those. The modis_regrid tool has library
> > > dependencies -
> > > > > it
> > > > > > >> > requires the HDF4 and HDF-EOS2 libraries. The
> plot_mode_field
> > > > tool
> > > > > > >> > also
> > > > > > >> > has library dependencies - it requires the Cairo and
> FreeType
> > > > > > >> > libraries.
> > > > > > >> >
> > > > > > >> > You can find information on compiling each of those
library
> > > > > > >> > dependencies
> > > > > > >> > here:
> > > > > > >> >
> > > > > > >>
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > >> >
> > > > > > >> > You can find information on setting the up necessary
> > environment
> > > > > > >> variables
> > > > > > >> > for those library locations here:
> > > > > > >> >
> > > > > > >>
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > > > > >> >
> > > > > > >> > And with pb2nc, I'm not exactly sure what is going on
there.
> > I
> > > > > would
> > > > > > >> > be
> > > > > > >> > happy to take a look at your configure log and make
install
> > log
> > > > > files
> > > > > > >> > to
> > > > > > >> > see if I can figure out why you didn't get the
executable.
> > > > > > >> >
> > > > > > >> > I hope this helps.
> > > > > > >> >
> > > > > > >> > Thanks,
> > > > > > >> > Julie
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via RT
> > > > > > >> > <met_help at ucar.edu>
> > > > > > >> > wrote:
> > > > > > >> >
> > > > > > >> >>
> > > > > > >> >> <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > > >
> > > > > > >> >>
> > > > > > >> >> Julg
> > > > > > >> >> Thank you very much for your help. With the advice
you gave
> > > me, I
> > > > > was
> > > > > > >> >> able to install MET using gcc and gfortran. I also
had to
> to
> > > > point
> > > > > > >> >> $MET_NETCDFLIB and, $MET_NETCDFINC to
> > > /usr/local/netcdf-4.1.3/lib
> > > > > and
> > > > > > >> >> include. Previously I pointed only to
> > /usr/local/netcdf-4.1.3.
> > > > > > >> >> I have three executables not included though, these
are
> > > > > modis_regrid,
> > > > > > >> >> plot_mode_field and pb2nc.
> > > > > > >> >> Thank you very much.
> > > > > > >> >>
> > > > > > >> >>
> > > > > > >> >> On 1/29/15, Julie Prestopnik via RT
<met_help at ucar.edu>
> > wrote:
> > > > > > >> >> > I am sorry to hear that you are having problems
> installing
> > > > > METv5.0.
> > > > > > >> >> > I
> > > > > > >> >> > believe this error may have to do with how you
compiled
> > > > BUFRLIB.
> > > > > > >> >> > Please
> > > > > > >> >> > take a look at the sample commands for compiling
BURFLIB
> on
> > > > this
> > > > > > >> >> > page:
> > > > > > >> >> >
> > > > > > >> >>
> > > > > > >>
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > >> >> >
> > > > > > >> >> > I believe that the *-fno-second-underscore* (GNU
> compilers)
> > > or
> > > > > > >> >> > *-Mnosecond_underscore* (PGI compilers) will fix
the
> error
> > > > you're
> > > > > > >> >> > seeing.
> > > > > > >> >> >
> > > > > > >> >> > I hope that helps. If it doesn't, please send me
the
> files
> > > > > > >> >> "make_met.log"
> > > > > > >> >> > and "config.log".
> > > > > > >> >> >
> > > > > > >> >> > Thanks,
> > > > > > >> >> > Julie
> > > > > > >> >> >
> > > > > > >> >> >
> > > > > > >> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba via
RT
> > > > > > >> >> > <met_help at ucar.edu>
> > > > > > >> >> > wrote:
> > > > > > >> >> >
> > > > > > >> >> >>
> > > > > > >> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was acted
upon.
> > > > > > >> >> >> Transaction: Ticket created by zmumba at gmail.com
> > > > > > >> >> >> Queue: met_help
> > > > > > >> >> >> Subject: Problem compiling Met-V5
> > > > > > >> >> >> Owner: Nobody
> > > > > > >> >> >> Requestors: zmumba at gmail.com
> > > > > > >> >> >> Status: new
> > > > > > >> >> >> Ticket <URL:
> > > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > > > > > >> >> >> >
> > > > > > >> >> >>
> > > > > > >> >> >>
> > > > > > >> >> >> I have installed BUFRLIB, GSL and G2CLIB
> > > > > > >> >> >> But then how do I handle the errors below in
installing
> > > > MET_V5?
> > > > > > >> >> >>
> > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `ufbtab_'
> > > > > > >> >> >> openpb.o: In function `openpb_':
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `openbf_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `datelen_'
> > > > > > >> >> >> closepb.o: In function `closepb_':
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
> > > > > > >> undefined
> > > > > > >> >> >> reference to `closbf_'
> > > > > > >> >> >> readpb.o: In function `readpb_':
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `ireadns_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `ufbint_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `ufbevn_'
> > > > > > >> >> >> dumppb.o: In function `readpbdump_':
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
> > > > > > >> undefined
> > > > > > >> >> >> reference to `ufbint_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
> > > > > > >> undefined
> > > > > > >> >> >> reference to `ufbevn_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
> > > > > > >> undefined
> > > > > > >> >> >> reference to `ireadns_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
> > > > > > >> undefined
> > > > > > >> >> >> reference to `ireadns_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
> > > > > > >> undefined
> > > > > > >> >> >> reference to `ufbint_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
> > > > > > >> undefined
> > > > > > >> >> >> reference to `ufbevn_'
> > > > > > >> >> >> dumppb.o: In function `dumppb_':
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `openbf_'
> > > > > > >> >> >>
> > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
> > > > > > >> >> >> undefined
> > > > > > >> >> >> reference to `datelen_'
> > > > > > >> >> >> collect2: error: ld returned 1 exit status
> > > > > > >> >> >> make[4]: *** [pb2nc] Error 1
> > > > > > >> >> >> make[4]: Leaving directory
> > > > > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other/pb2nc'
> > > > > > >> >> >> make[3]: *** [install-recursive] Error 1
> > > > > > >> >> >> make[3]: Leaving directory
> > > > > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
> > > > > > >> >> >> make[2]: *** [install-recursive] Error 1
> > > > > > >> >> >> make[2]: Leaving directory
> > > > `/home/zmumba/WRF/met-5.0/src/tools'
> > > > > > >> >> >> make[1]: *** [install-recursive] Error 1
> > > > > > >> >> >> make[1]: Leaving directory
> `/home/zmumba/WRF/met-5.0/src'
> > > > > > >> >> >> make: *** [install-recursive] Error 1
> > > > > > >> >> >>
> > > > > > >> >> >>
> > > > > > >> >> >
> > > > > > >> >> >
> > > > > > >> >> > --
> > > > > > >> >> > Julie Prestopnik
> > > > > > >> >> > National Center for Atmospheric Research
> > > > > > >> >> > Research Applications Laboratory
> > > > > > >> >> > Phone: 303.497.8399
> > > > > > >> >> > Email: jpresto at ucar.edu
> > > > > > >> >> >
> > > > > > >> >> >
> > > > > > >> >>
> > > > > > >> >>
> > > > > > >> >
> > > > > > >> >
> > > > > > >> > --
> > > > > > >> > Julie Prestopnik
> > > > > > >> > National Center for Atmospheric Research
> > > > > > >> > Research Applications Laboratory
> > > > > > >> > Phone: 303.497.8399
> > > > > > >> > Email: jpresto at ucar.edu
> > > > > > >> >
> > > > > > >> >
> > > > > > >>
> > > > > > >>
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Julie Prestopnik
> > > > > > > National Center for Atmospheric Research
> > > > > > > Research Applications Laboratory
> > > > > > > Phone: 303.497.8399
> > > > > > > Email: jpresto at ucar.edu
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Julie Prestopnik
> > > > > National Center for Atmospheric Research
> > > > > Research Applications Laboratory
> > > > > Phone: 303.497.8399
> > > > > Email: jpresto at ucar.edu
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: Problem compiling Met-V5
From: Julie Prestopnik
Time: Thu Mar 05 15:12:03 2015
I'm so glad to hear you got pb2nc installed. Please let us know if
you
have any other questions as you learn to use the tools.
Julie
On Thu, Mar 5, 2015 at 3:10 PM, Zilore Mumba via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
>
> Julie,
> Thank you very much. The library was in none of the paths listed.
Now i
> manged to have pb2nc installed.
> Now I can concentrate on learning how to use the tool.
> Thank you very much
>
> On Thu, Mar 5, 2015 at 7:59 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> >
> wrote:
>
> > Hi Zilore. Thanks for sending your commands and log files.
> >
> > Looking in "config.log" for the string "BUFRLIB", it appears that
you did
> > not set the environment variable.
> >
> > The linker error occurs on line 1057 of make_install.log. Looking
at
> that
> > line, we're telling the linker to look in the following
directories for
> the
> > file named "libbufr.a":
> >
> > -L/usr/lib/gcc/i686-linux-gnu/4.8
> > -L/usr/lib/gcc/i686-linux-gnu/4.8/../../../i386-linux-gnu
> > -L/usr/lib/gcc/i686-linux-gnu/4.8/../../../../lib
> > -L/lib/i386-linux-gnu
> > -L/lib/../lib
> > -L/usr/lib/i386-linux-gnu
> > -L/usr/lib/../lib
> > -L/usr/lib/gcc/i686-linux-gnu/4.8/../../..
> >
> > It must be finding libbufr.a in one of those directories,
otherwise we
> > would get an error about that. I believe that the version of
libbufr.a
> it
> > is finding is not the version that you compiled using the "-
DUNDERSCORE"
> > option.
> >
> > I was able to replicate your error by re-compiling a version of
BUFRLIB
> > *without* -DUNDERSCORE, and then by building MET linking to that
bad
> > version.
> >
> > What you'll need to do is set the MET_BUFRLIB environment variable
as
> > indicated on this page:
> >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> >
> > Then source your .cshrc or equivalent file, then run your
configure
> > command, and then run make install and make test.
> >
> > Please give that a try. It should solve the problem you are
> encountering.
> >
> > Thanks,
> > Julie
> >
> > On Wed, Mar 4, 2015 at 5:36 AM, Zilore Mumba via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > >
> > > *Julie, I installed with the following commands. gcc -c
-DUNDERSCORE
> *.c*
> > > *gfortran -c -DUNDERSCORE -fno-second-underscore *.f *.F*
> > > *ar crv libbufr.a *.o*
> > >
> > >
> > >
> > > *Please find attached the config.log and make_install.log *
> > >
> > >
> > > On Tue, Mar 3, 2015 at 7:10 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > >
> > > wrote:
> > >
> > > > I'm sorry to hear that you are still experiencing problems
installing
> > > > METv5.0.
> > > >
> > > > Specifically regarding BUFRLIB, please compile it using the
options
> > > listed
> > > > on this page:
> > > >
> > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > >
> > > > Failing to use the "-DUNDERSCORE -fno-second-underscore" (for
GNU
> > > > compilers) options will result in undefined references when
building
> > the
> > > > pb2nc tool.
> > > >
> > > > If you'd like to send us the output of make please do the
following:
> > > > make clean
> > > > make install >& make_install.log
> > > >
> > > > And then send us the files "config.log" and
"make_install.log".
> > > >
> > > > I hope you'll find what you have been able to install useful.
Please
> > let
> > > > us know if you have any questions.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Tue, Mar 3, 2015 at 12:26 AM, Zilore Mumba via RT <
> > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551 >
> > > > >
> > > > > Julie,
> > > > > I did not inform you of the conclusion of my attempt to
install
> > > Met-5.1.
> > > > > After making many attempts in reinstalling/reconfiguring
BUFRLIB i
> > > still
> > > > > get errors relating to "undefined reference to ..." and
eventually
> I
> > > > still
> > > > > have 3 executables not installed: pb2nc, modis_regrid,
> > plot_mode_field.
> > > > > I would like to learn how to use what I have and come back
later to
> > > pb2nc
> > > > > if necessary. I will inform you if I have any other
problems.
> > > > >
> > > > >
> > > > > On Tue, Feb 10, 2015 at 7:12 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Thank you for rerunning and sending this log. Perhaps MET
cannot
> > > find
> > > > > the
> > > > > > BUFR library.
> > > > > >
> > > > > > On the following page are directions for setting the
environment
> > > > > variables
> > > > > > before compiling MET:
> > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > > > >
> > > > > > The rest of the applications built, so it looks like MET
was able
> > to
> > > > find
> > > > > > the other needed libraries. The directions for the BUFR
> > environment
> > > > > > variable on the above page are:
> > > > > >
> > > > > > "Set *$MET_BUFR* to point to the main BUFR directory, or
set
> > > > > *$MET_BUFRLIB*
> > > > > > to point to the directory with the BUFR library files.
Because
> MET
> > > > > doesn't
> > > > > > use any BUFR library include files, you don't need to
specify
> > > > > > *$MET_BUFRINC*
> > > > > > ."
> > > > > >
> > > > > > Please try setting either *$MET_BUFR *or *$MET_BUFRLIB
*and then
> > > please
> > > > > > rerun the configure script and then rerun make install.
It is
> > > > important
> > > > > to
> > > > > > rerun configure before rerunning make install.
> > > > > >
> > > > > > Please let me know how it goes.
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Sat, Feb 7, 2015 at 9:36 PM, Zilore Mumba via RT <
> > > met_help at ucar.edu
> > > > >
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> >
> > > > > > >
> > > > > > > Julie,
> > > > > > > Attached to this mail, please find the file make-
install.log.
> It
> > > does
> > > > > > > show 'undefined reference' to some functions. I hope
this means
> > > > > > > something to you and that you can help.
> > > > > > > Thanks in advance
> > > > > > > Zilore
> > > > > > >
> > > > > > >
> > > > > > > On 2/5/15, Julie Prestopnik via RT <met_help at ucar.edu>
wrote:
> > > > > > > > Thank you for attaching your log files. I did not see
any
> > errors
> > > > in
> > > > > > your
> > > > > > > > make-install.log. Perhaps you ran make install in the
> > following
> > > > way:
> > > > > > > >
> > > > > > > > make install > make-install.log
> > > > > > > >
> > > > > > > > This would catch standard out but not standard error.
> > > > > > > >
> > > > > > > > Could you please try running in the following way with
the &,
> > > which
> > > > > > will
> > > > > > > > also capture standard error?
> > > > > > > >
> > > > > > > > make install >& make-install.log
> > > > > > > >
> > > > > > > > And, then please send me the output of that log.
Thank you!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Tue, Feb 3, 2015 at 2:08 PM, Zilore Mumba via RT <
> > > > > met_help at ucar.edu
> > > > > > >
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > >>
> > > > > > > >> <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > >
> > > > > > > >>
> > > > > > > >> Julie,
> > > > > > > >> Thank you very much for your assistance. I failed to
install
> > > Cairo
> > > > > and
> > > > > > > >> freetype because of the dependencies. I will try
again with
> > the
> > > > > links
> > > > > > > >> you sent me.
> > > > > > > >> Please find attached my config.log and make-
install.log.
> > > > > > > >>
> > > > > > > >>
> > > > > > > >> On 2/2/15, Julie Prestopnik via RT
<met_help at ucar.edu>
> wrote:
> > > > > > > >> > I'm so glad you were able to get MET installed and
that
> you
> > > > worked
> > > > > > out
> > > > > > > >> the
> > > > > > > >> > issue with the NetCDF environment variables.
> > > > > > > >> >
> > > > > > > >> > You mentioned that three executables did not build.
I
> would
> > > > like
> > > > > to
> > > > > > > >> > try
> > > > > > > >> to
> > > > > > > >> > help with those. The modis_regrid tool has library
> > > > dependencies -
> > > > > > it
> > > > > > > >> > requires the HDF4 and HDF-EOS2 libraries. The
> > plot_mode_field
> > > > > tool
> > > > > > > >> > also
> > > > > > > >> > has library dependencies - it requires the Cairo
and
> > FreeType
> > > > > > > >> > libraries.
> > > > > > > >> >
> > > > > > > >> > You can find information on compiling each of those
> library
> > > > > > > >> > dependencies
> > > > > > > >> > here:
> > > > > > > >> >
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > > >> >
> > > > > > > >> > You can find information on setting the up
necessary
> > > environment
> > > > > > > >> variables
> > > > > > > >> > for those library locations here:
> > > > > > > >> >
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/configure.php
> > > > > > > >> >
> > > > > > > >> > And with pb2nc, I'm not exactly sure what is going
on
> there.
> > > I
> > > > > > would
> > > > > > > >> > be
> > > > > > > >> > happy to take a look at your configure log and make
> install
> > > log
> > > > > > files
> > > > > > > >> > to
> > > > > > > >> > see if I can figure out why you didn't get the
executable.
> > > > > > > >> >
> > > > > > > >> > I hope this helps.
> > > > > > > >> >
> > > > > > > >> > Thanks,
> > > > > > > >> > Julie
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> > On Sat, Jan 31, 2015 at 5:31 PM, Zilore Mumba via
RT
> > > > > > > >> > <met_help at ucar.edu>
> > > > > > > >> > wrote:
> > > > > > > >> >
> > > > > > > >> >>
> > > > > > > >> >> <URL:
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > > > >
> > > > > > > >> >>
> > > > > > > >> >> Julg
> > > > > > > >> >> Thank you very much for your help. With the advice
you
> gave
> > > > me, I
> > > > > > was
> > > > > > > >> >> able to install MET using gcc and gfortran. I also
had to
> > to
> > > > > point
> > > > > > > >> >> $MET_NETCDFLIB and, $MET_NETCDFINC to
> > > > /usr/local/netcdf-4.1.3/lib
> > > > > > and
> > > > > > > >> >> include. Previously I pointed only to
> > > /usr/local/netcdf-4.1.3.
> > > > > > > >> >> I have three executables not included though,
these are
> > > > > > modis_regrid,
> > > > > > > >> >> plot_mode_field and pb2nc.
> > > > > > > >> >> Thank you very much.
> > > > > > > >> >>
> > > > > > > >> >>
> > > > > > > >> >> On 1/29/15, Julie Prestopnik via RT
<met_help at ucar.edu>
> > > wrote:
> > > > > > > >> >> > I am sorry to hear that you are having problems
> > installing
> > > > > > METv5.0.
> > > > > > > >> >> > I
> > > > > > > >> >> > believe this error may have to do with how you
compiled
> > > > > BUFRLIB.
> > > > > > > >> >> > Please
> > > > > > > >> >> > take a look at the sample commands for compiling
> BURFLIB
> > on
> > > > > this
> > > > > > > >> >> > page:
> > > > > > > >> >> >
> > > > > > > >> >>
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > > >> >> >
> > > > > > > >> >> > I believe that the *-fno-second-underscore* (GNU
> > compilers)
> > > > or
> > > > > > > >> >> > *-Mnosecond_underscore* (PGI compilers) will fix
the
> > error
> > > > > you're
> > > > > > > >> >> > seeing.
> > > > > > > >> >> >
> > > > > > > >> >> > I hope that helps. If it doesn't, please send
me the
> > files
> > > > > > > >> >> "make_met.log"
> > > > > > > >> >> > and "config.log".
> > > > > > > >> >> >
> > > > > > > >> >> > Thanks,
> > > > > > > >> >> > Julie
> > > > > > > >> >> >
> > > > > > > >> >> >
> > > > > > > >> >> > On Thu, Jan 29, 2015 at 3:48 AM, Zilore Mumba
via RT
> > > > > > > >> >> > <met_help at ucar.edu>
> > > > > > > >> >> > wrote:
> > > > > > > >> >> >
> > > > > > > >> >> >>
> > > > > > > >> >> >> Thu Jan 29 03:48:08 2015: Request 70551 was
acted
> upon.
> > > > > > > >> >> >> Transaction: Ticket created by zmumba at gmail.com
> > > > > > > >> >> >> Queue: met_help
> > > > > > > >> >> >> Subject: Problem compiling Met-V5
> > > > > > > >> >> >> Owner: Nobody
> > > > > > > >> >> >> Requestors: zmumba at gmail.com
> > > > > > > >> >> >> Status: new
> > > > > > > >> >> >> Ticket <URL:
> > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=70551
> > > > > > > >> >> >> >
> > > > > > > >> >> >>
> > > > > > > >> >> >>
> > > > > > > >> >> >> I have installed BUFRLIB, GSL and G2CLIB
> > > > > > > >> >> >> But then how do I handle the errors below in
> installing
> > > > > MET_V5?
> > > > > > > >> >> >>
> > > > > > > >> >> >>
> > > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/numpbmsg.f:23:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `ufbtab_'
> > > > > > > >> >> >> openpb.o: In function `openpb_':
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:21:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `openbf_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/openpb.f:22:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `datelen_'
> > > > > > > >> >> >> closepb.o: In function `closepb_':
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/closepb.f:19:
> > > > > > > >> undefined
> > > > > > > >> >> >> reference to `closbf_'
> > > > > > > >> >> >> readpb.o: In function `readpb_':
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:82:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `ireadns_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:90:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `ufbint_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/readpb.f:94:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `ufbevn_'
> > > > > > > >> >> >> dumppb.o: In function `readpbdump_':
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:215:
> > > > > > > >> undefined
> > > > > > > >> >> >> reference to `ufbint_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:218:
> > > > > > > >> undefined
> > > > > > > >> >> >> reference to `ufbevn_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:224:
> > > > > > > >> undefined
> > > > > > > >> >> >> reference to `ireadns_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:203:
> > > > > > > >> undefined
> > > > > > > >> >> >> reference to `ireadns_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:228:
> > > > > > > >> undefined
> > > > > > > >> >> >> reference to `ufbint_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:259:
> > > > > > > >> undefined
> > > > > > > >> >> >> reference to `ufbevn_'
> > > > > > > >> >> >> dumppb.o: In function `dumppb_':
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:56:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `openbf_'
> > > > > > > >> >> >>
> > > /home/zmumba/WRF/met-5.0/src/tools/other/pb2nc/dumppb.f:57:
> > > > > > > >> >> >> undefined
> > > > > > > >> >> >> reference to `datelen_'
> > > > > > > >> >> >> collect2: error: ld returned 1 exit status
> > > > > > > >> >> >> make[4]: *** [pb2nc] Error 1
> > > > > > > >> >> >> make[4]: Leaving directory
> > > > > > > >> >> >> `/home/zmumba/WRF/met-
5.0/src/tools/other/pb2nc'
> > > > > > > >> >> >> make[3]: *** [install-recursive] Error 1
> > > > > > > >> >> >> make[3]: Leaving directory
> > > > > > > >> >> >> `/home/zmumba/WRF/met-5.0/src/tools/other'
> > > > > > > >> >> >> make[2]: *** [install-recursive] Error 1
> > > > > > > >> >> >> make[2]: Leaving directory
> > > > > `/home/zmumba/WRF/met-5.0/src/tools'
> > > > > > > >> >> >> make[1]: *** [install-recursive] Error 1
> > > > > > > >> >> >> make[1]: Leaving directory
> > `/home/zmumba/WRF/met-5.0/src'
> > > > > > > >> >> >> make: *** [install-recursive] Error 1
> > > > > > > >> >> >>
> > > > > > > >> >> >>
> > > > > > > >> >> >
> > > > > > > >> >> >
> > > > > > > >> >> > --
> > > > > > > >> >> > Julie Prestopnik
> > > > > > > >> >> > National Center for Atmospheric Research
> > > > > > > >> >> > Research Applications Laboratory
> > > > > > > >> >> > Phone: 303.497.8399
> > > > > > > >> >> > Email: jpresto at ucar.edu
> > > > > > > >> >> >
> > > > > > > >> >> >
> > > > > > > >> >>
> > > > > > > >> >>
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> > --
> > > > > > > >> > Julie Prestopnik
> > > > > > > >> > National Center for Atmospheric Research
> > > > > > > >> > Research Applications Laboratory
> > > > > > > >> > Phone: 303.497.8399
> > > > > > > >> > Email: jpresto at ucar.edu
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >>
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > Julie Prestopnik
> > > > > > > > National Center for Atmospheric Research
> > > > > > > > Research Applications Laboratory
> > > > > > > > Phone: 303.497.8399
> > > > > > > > Email: jpresto at ucar.edu
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Julie Prestopnik
> > > > > > National Center for Atmospheric Research
> > > > > > Research Applications Laboratory
> > > > > > Phone: 303.497.8399
> > > > > > Email: jpresto at ucar.edu
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
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