[Met_help] [rt.rap.ucar.edu #69142] History for Segmentation Fault while running Plot-MODE-Field
Randy Bullock via RT
met_help at ucar.edu
Tue Apr 14 10:27:18 MDT 2015
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
I am currently running METv5.0 on Scientific Linux 6.5 with PGI version
14.6-0 compilers. Everything is fine until I try to run Plot-MODE-Field.
Every time I run the tool, I get a Segmentation Fault. I've tried on two
different machines that are clones of each other, and I'm still running
into this issue. Has this version of MET been tested on Scientific Linux?
Why might I be running into this issue with only the one tool?
Thanks,
Brianne Gerber
Masters Candidate
Atmospheric and Environmental Sciences
South Dakota School of Mines and Technology
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Segmentation Fault while running Plot-MODE-Field
From: Randy Bullock
Time: Tue Sep 30 10:31:38 2014
Hello -
Sorry to hear you're having trouble with the MODE plotting tool. Not
entirely unexpected though ... this tools is brand new with this
release,
and so has not been tested as much as the other tools.
<ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
Could you upload the MET netcdf file you're having trouble with, and
also
the plot_mode_field config file, to our ftp server? The url is
ftp://ftp.rap.ucar.edu/incoming/irap/met_help.
<ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
Just log in as "anonymous". Once I have these files, I'll see if I
can
reproduce the error on our computers.
To answer one of your questions: no, the MET package has not been
tested on
Scientific Linux. The number of different linux distributions we have
access to for testing is quite limited.
Let me know when the files are uploaded, and I'll have a look at them.
Thanks!
<ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
On Mon, Sep 29, 2014 at 10:30 AM, Brianne Gerber via RT
<met_help at ucar.edu>
wrote:
>
> Mon Sep 29 10:30:12 2014: Request 69142 was acted upon.
> Transaction: Ticket created by brianne.gerber at mines.sdsmt.edu
> Queue: met_help
> Subject: Segmentation Fault while running Plot-MODE-Field
> Owner: Nobody
> Requestors: brianne.gerber at mines.sdsmt.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142 >
>
>
> I am currently running METv5.0 on Scientific Linux 6.5 with PGI
version
> 14.6-0 compilers. Everything is fine until I try to run Plot-MODE-
Field.
> Every time I run the tool, I get a Segmentation Fault. I've tried on
two
> different machines that are clones of each other, and I'm still
running
> into this issue. Has this version of MET been tested on Scientific
Linux?
> Why might I be running into this issue with only the one tool?
>
> Thanks,
>
> Brianne Gerber
> Masters Candidate
> Atmospheric and Environmental Sciences
> South Dakota School of Mines and Technology
>
>
------------------------------------------------
Subject: Segmentation Fault while running Plot-MODE-Field
From: Brianne Gerber
Time: Tue Sep 30 10:59:29 2014
I think I have the files uploaded. Thanks.
On Tue, Sep 30, 2014 at 10:31 AM, Randy Bullock via RT
<met_help at ucar.edu>
wrote:
> Hello -
>
> Sorry to hear you're having trouble with the MODE plotting tool.
Not
> entirely unexpected though ... this tools is brand new with this
release,
> and so has not been tested as much as the other tools.
> <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> Could you upload the MET netcdf file you're having trouble with, and
also
> the plot_mode_field config file, to our ftp server? The url is
> ftp://ftp.rap.ucar.edu/incoming/irap/met_help.
> <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> Just log in as "anonymous". Once I have these files, I'll see if I
can
> reproduce the error on our computers.
>
> To answer one of your questions: no, the MET package has not been
tested on
> Scientific Linux. The number of different linux distributions we
have
> access to for testing is quite limited.
>
> Let me know when the files are uploaded, and I'll have a look at
them.
>
> Thanks!
> <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
>
> On Mon, Sep 29, 2014 at 10:30 AM, Brianne Gerber via RT
<met_help at ucar.edu
> >
> wrote:
>
> >
> > Mon Sep 29 10:30:12 2014: Request 69142 was acted upon.
> > Transaction: Ticket created by brianne.gerber at mines.sdsmt.edu
> > Queue: met_help
> > Subject: Segmentation Fault while running Plot-MODE-Field
> > Owner: Nobody
> > Requestors: brianne.gerber at mines.sdsmt.edu
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142 >
> >
> >
> > I am currently running METv5.0 on Scientific Linux 6.5 with PGI
version
> > 14.6-0 compilers. Everything is fine until I try to run Plot-MODE-
Field.
> > Every time I run the tool, I get a Segmentation Fault. I've tried
on two
> > different machines that are clones of each other, and I'm still
running
> > into this issue. Has this version of MET been tested on Scientific
Linux?
> > Why might I be running into this issue with only the one tool?
> >
> > Thanks,
> >
> > Brianne Gerber
> > Masters Candidate
> > Atmospheric and Environmental Sciences
> > South Dakota School of Mines and Technology
> >
> >
>
>
------------------------------------------------
Subject: Segmentation Fault while running Plot-MODE-Field
From: Randy Bullock
Time: Wed Oct 01 08:44:15 2014
Hello again -
Thanks for putting those files on our ftp server. I grabbed them and
tried
to duplicate your bug, but the tool ran fine for me. Here's the
command I
ran:
plot_mode_field -simple -obs -config my_config
mode_240000L_20050808_000000V_120000A_obj.nc
The config file "my_config" that I used is identical to yours except
for
the "output_directory" element. I've attached the output png file I
got to
this email. It looks OK to me.
What this means is that there is no problem with your met data file or
your
config file. That helps eliminate some possibilities. There are
several
more possibilities we can look at.
Could you email me the error message you get when you run the tool?
Also,
could you try just typing "plot_mode_field" and hitting <return>? I
want
to see if the program gives you a usage statement or if it crashes
even
with no input files.
Right now, my guess is that the run-time loader isn't finding the
shared
object libraries it needs. I'll know more after I see the results of
the
experiments in the previous paragraph.
Thanks
Randy
On Tue, Sep 30, 2014 at 10:59 AM, Brianne Gerber via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142 >
>
> I think I have the files uploaded. Thanks.
>
> On Tue, Sep 30, 2014 at 10:31 AM, Randy Bullock via RT
<met_help at ucar.edu>
> wrote:
>
> > Hello -
> >
> > Sorry to hear you're having trouble with the MODE plotting tool.
Not
> > entirely unexpected though ... this tools is brand new with this
release,
> > and so has not been tested as much as the other tools.
> > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > Could you upload the MET netcdf file you're having trouble with,
and also
> > the plot_mode_field config file, to our ftp server? The url is
> > ftp://ftp.rap.ucar.edu/incoming/irap/met_help.
> > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > Just log in as "anonymous". Once I have these files, I'll see if
I can
> > reproduce the error on our computers.
> >
> > To answer one of your questions: no, the MET package has not been
tested
> on
> > Scientific Linux. The number of different linux distributions we
have
> > access to for testing is quite limited.
> >
> > Let me know when the files are uploaded, and I'll have a look at
them.
> >
> > Thanks!
> > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> >
> > On Mon, Sep 29, 2014 at 10:30 AM, Brianne Gerber via RT <
> met_help at ucar.edu
> > >
> > wrote:
> >
> > >
> > > Mon Sep 29 10:30:12 2014: Request 69142 was acted upon.
> > > Transaction: Ticket created by brianne.gerber at mines.sdsmt.edu
> > > Queue: met_help
> > > Subject: Segmentation Fault while running Plot-MODE-Field
> > > Owner: Nobody
> > > Requestors: brianne.gerber at mines.sdsmt.edu
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142
> >
> > >
> > >
> > > I am currently running METv5.0 on Scientific Linux 6.5 with PGI
version
> > > 14.6-0 compilers. Everything is fine until I try to run
> Plot-MODE-Field.
> > > Every time I run the tool, I get a Segmentation Fault. I've
tried on
> two
> > > different machines that are clones of each other, and I'm still
running
> > > into this issue. Has this version of MET been tested on
Scientific
> Linux?
> > > Why might I be running into this issue with only the one tool?
> > >
> > > Thanks,
> > >
> > > Brianne Gerber
> > > Masters Candidate
> > > Atmospheric and Environmental Sciences
> > > South Dakota School of Mines and Technology
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: Segmentation Fault while running Plot-MODE-Field
From: Brianne Gerber
Time: Wed Oct 01 10:54:56 2014
The error message I'm getting when I try to run the tool with data is
"Segmentation Fault" (it's at the time that it's trying to save the
plot).
Here is what happens when I look for the usage statement:
[bgerber at gale:/IAS_RAID2/projects/WRF_REALTIME/met-5.0]%
bin/plot_mode_field
ERROR :
ERROR :
ERROR : usage: plot_mode_field: -simple|-composite|-raw -obs|-
fcst
-config path -log path -v n mode_nc_file_list
ERROR :
-Brianne
On Wed, Oct 1, 2014 at 8:44 AM, Randy Bullock via RT
<met_help at ucar.edu>
wrote:
> Hello again -
>
> Thanks for putting those files on our ftp server. I grabbed them
and tried
> to duplicate your bug, but the tool ran fine for me. Here's the
command I
> ran:
>
> plot_mode_field -simple -obs -config my_config
> mode_240000L_20050808_000000V_120000A_obj.nc
>
> The config file "my_config" that I used is identical to yours except
for
> the "output_directory" element. I've attached the output png file I
got to
> this email. It looks OK to me.
>
> What this means is that there is no problem with your met data file
or your
> config file. That helps eliminate some possibilities. There are
several
> more possibilities we can look at.
>
> Could you email me the error message you get when you run the tool?
Also,
> could you try just typing "plot_mode_field" and hitting <return>? I
want
> to see if the program gives you a usage statement or if it crashes
even
> with no input files.
>
> Right now, my guess is that the run-time loader isn't finding the
shared
> object libraries it needs. I'll know more after I see the results
of the
> experiments in the previous paragraph.
>
> Thanks
>
> Randy
>
>
>
> On Tue, Sep 30, 2014 at 10:59 AM, Brianne Gerber via RT
<met_help at ucar.edu
> >
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142 >
> >
> > I think I have the files uploaded. Thanks.
> >
> > On Tue, Sep 30, 2014 at 10:31 AM, Randy Bullock via RT <
> met_help at ucar.edu>
> > wrote:
> >
> > > Hello -
> > >
> > > Sorry to hear you're having trouble with the MODE plotting tool.
Not
> > > entirely unexpected though ... this tools is brand new with this
> release,
> > > and so has not been tested as much as the other tools.
> > > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > > Could you upload the MET netcdf file you're having trouble with,
and
> also
> > > the plot_mode_field config file, to our ftp server? The url is
> > > ftp://ftp.rap.ucar.edu/incoming/irap/met_help.
> > > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > > Just log in as "anonymous". Once I have these files, I'll see
if I can
> > > reproduce the error on our computers.
> > >
> > > To answer one of your questions: no, the MET package has not
been
> tested
> > on
> > > Scientific Linux. The number of different linux distributions
we have
> > > access to for testing is quite limited.
> > >
> > > Let me know when the files are uploaded, and I'll have a look at
them.
> > >
> > > Thanks!
> > > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > >
> > > On Mon, Sep 29, 2014 at 10:30 AM, Brianne Gerber via RT <
> > met_help at ucar.edu
> > > >
> > > wrote:
> > >
> > > >
> > > > Mon Sep 29 10:30:12 2014: Request 69142 was acted upon.
> > > > Transaction: Ticket created by brianne.gerber at mines.sdsmt.edu
> > > > Queue: met_help
> > > > Subject: Segmentation Fault while running Plot-MODE-Field
> > > > Owner: Nobody
> > > > Requestors: brianne.gerber at mines.sdsmt.edu
> > > > Status: new
> > > > Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142
> > >
> > > >
> > > >
> > > > I am currently running METv5.0 on Scientific Linux 6.5 with
PGI
> version
> > > > 14.6-0 compilers. Everything is fine until I try to run
> > Plot-MODE-Field.
> > > > Every time I run the tool, I get a Segmentation Fault. I've
tried on
> > two
> > > > different machines that are clones of each other, and I'm
still
> running
> > > > into this issue. Has this version of MET been tested on
Scientific
> > Linux?
> > > > Why might I be running into this issue with only the one tool?
> > > >
> > > > Thanks,
> > > >
> > > > Brianne Gerber
> > > > Masters Candidate
> > > > Atmospheric and Environmental Sciences
> > > > South Dakota School of Mines and Technology
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: Segmentation Fault while running Plot-MODE-Field
From: Randy Bullock
Time: Thu Oct 02 12:13:10 2014
Hi Brianne -
Well, I'm stuck. I can't reproduce the error you're seeing, and the
experiments you did for me (thanks for that, by the way) tell me the
problem is not any of the other things I thought it might be.
At this point, about all I can do is point out that you can use MET's
plot_data_plane tool to produce postscript plots of the MODE netcdf
output
files. Sorry I couldn't be more help to you.
Randy
On Wed, Oct 1, 2014 at 10:54 AM, Brianne Gerber via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142 >
>
> The error message I'm getting when I try to run the tool with data
is
> "Segmentation Fault" (it's at the time that it's trying to save the
plot).
>
> Here is what happens when I look for the usage statement:
> [bgerber at gale:/IAS_RAID2/projects/WRF_REALTIME/met-5.0]%
> bin/plot_mode_field
> ERROR :
> ERROR :
> ERROR : usage: plot_mode_field: -simple|-composite|-raw -obs|-
fcst
> -config path -log path -v n mode_nc_file_list
> ERROR :
>
> -Brianne
>
> On Wed, Oct 1, 2014 at 8:44 AM, Randy Bullock via RT
<met_help at ucar.edu>
> wrote:
>
> > Hello again -
> >
> > Thanks for putting those files on our ftp server. I grabbed them
and
> tried
> > to duplicate your bug, but the tool ran fine for me. Here's the
command
> I
> > ran:
> >
> > plot_mode_field -simple -obs -config my_config
> > mode_240000L_20050808_000000V_120000A_obj.nc
> >
> > The config file "my_config" that I used is identical to yours
except for
> > the "output_directory" element. I've attached the output png file
I got
> to
> > this email. It looks OK to me.
> >
> > What this means is that there is no problem with your met data
file or
> your
> > config file. That helps eliminate some possibilities. There are
several
> > more possibilities we can look at.
> >
> > Could you email me the error message you get when you run the
tool?
> Also,
> > could you try just typing "plot_mode_field" and hitting <return>?
I want
> > to see if the program gives you a usage statement or if it crashes
even
> > with no input files.
> >
> > Right now, my guess is that the run-time loader isn't finding the
shared
> > object libraries it needs. I'll know more after I see the results
of the
> > experiments in the previous paragraph.
> >
> > Thanks
> >
> > Randy
> >
> >
> >
> > On Tue, Sep 30, 2014 at 10:59 AM, Brianne Gerber via RT <
> met_help at ucar.edu
> > >
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142 >
> > >
> > > I think I have the files uploaded. Thanks.
> > >
> > > On Tue, Sep 30, 2014 at 10:31 AM, Randy Bullock via RT <
> > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Hello -
> > > >
> > > > Sorry to hear you're having trouble with the MODE plotting
tool. Not
> > > > entirely unexpected though ... this tools is brand new with
this
> > release,
> > > > and so has not been tested as much as the other tools.
> > > > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > > > Could you upload the MET netcdf file you're having trouble
with, and
> > also
> > > > the plot_mode_field config file, to our ftp server? The url
is
> > > > ftp://ftp.rap.ucar.edu/incoming/irap/met_help.
> > > > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > > > Just log in as "anonymous". Once I have these files, I'll see
if I
> can
> > > > reproduce the error on our computers.
> > > >
> > > > To answer one of your questions: no, the MET package has not
been
> > tested
> > > on
> > > > Scientific Linux. The number of different linux distributions
we
> have
> > > > access to for testing is quite limited.
> > > >
> > > > Let me know when the files are uploaded, and I'll have a look
at
> them.
> > > >
> > > > Thanks!
> > > > <ftp://ftp.rap.ucar.edu/incoming/irap/met_help/>
> > > >
> > > > On Mon, Sep 29, 2014 at 10:30 AM, Brianne Gerber via RT <
> > > met_help at ucar.edu
> > > > >
> > > > wrote:
> > > >
> > > > >
> > > > > Mon Sep 29 10:30:12 2014: Request 69142 was acted upon.
> > > > > Transaction: Ticket created by
brianne.gerber at mines.sdsmt.edu
> > > > > Queue: met_help
> > > > > Subject: Segmentation Fault while running Plot-MODE-
Field
> > > > > Owner: Nobody
> > > > > Requestors: brianne.gerber at mines.sdsmt.edu
> > > > > Status: new
> > > > > Ticket <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=69142
> > > >
> > > > >
> > > > >
> > > > > I am currently running METv5.0 on Scientific Linux 6.5 with
PGI
> > version
> > > > > 14.6-0 compilers. Everything is fine until I try to run
> > > Plot-MODE-Field.
> > > > > Every time I run the tool, I get a Segmentation Fault. I've
tried
> on
> > > two
> > > > > different machines that are clones of each other, and I'm
still
> > running
> > > > > into this issue. Has this version of MET been tested on
Scientific
> > > Linux?
> > > > > Why might I be running into this issue with only the one
tool?
> > > > >
> > > > > Thanks,
> > > > >
> > > > > Brianne Gerber
> > > > > Masters Candidate
> > > > > Atmospheric and Environmental Sciences
> > > > > South Dakota School of Mines and Technology
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: Segmentation Fault while running Plot-MODE-Field
From: Randy Bullock
Time: Tue Apr 14 10:27:17 2015
Unable to reproduce bug.
------------------------------------------------
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