[Met_help] [rt.rap.ucar.edu #57158] History for compilation problem
Paul Oldenburg via RT
met_help at ucar.edu
Mon Jul 9 13:22:31 MDT 2012
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Dear MET team,
I have problems compiling the MET source. I have attached the
compilation output file. Thank you for your help.
Best Regards,
Oscar
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #57158] compilation problem
From: Paul Oldenburg
Time: Tue Jun 26 14:57:21 2012
Oscar,
You need to tell the linker the location of the curl library on your
system. One way to do this is to find it, perhaps
using the find command, and then add its location to the list of
CXX_LIBS in your user_defs.mk file. On my system, it
is located in /usr/lib, so I would add it like this:
CXX_LIBS = -L/usr/lib
If the curl library has not been installed on your system, you must do
so first and then specify the location.
Was your instance of NetCDF compiled using the same compiler family as
you are trying to compile MET with
(/opt/intel/Compiler/11.1/064/bin/intel64/icpc)? Also, make sure that
you are disabling NetCDF4 when building the
NetCDF instance that you link from MET. Instructions on how to do
this can be found on the MET website Online Tutorial
(http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/req_libs.php).
In particular, use the
following line to configure the NetCDF instance before compiling it:
./configure --prefix=/netcdf/install/path --disable-netcdf-4
If you have any further questions, please let me know.
Thanks,
Paul
On 06/26/2012 02:37 PM, Oscar Chimborazo via RT wrote:
>
> Tue Jun 26 14:37:06 2012: Request 57158 was acted upon.
> Transaction: Ticket created by ochimborazo at gmail.com
> Queue: met_help
> Subject: compilation problem
> Owner: Nobody
> Requestors: ochimborazo at gmail.com
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>
>
> Dear MET team,
>
> I have problems compiling the MET source. I have attached the
> compilation output file. Thank you for your help.
>
> Best Regards,
>
> Oscar
>
------------------------------------------------
Subject: compilation problem
From: Oscar Chimborazo
Time: Thu Jun 28 16:38:11 2012
Hi Paul,
I did what you told me but It didn't work, I found in an old post that
a recommendation is remove the -static option from the CXX_FLAGS and I
did it together with your suggestion, but I got other problems now
with the GSL package. I compile the package with the same compilers
that I am using to compile MET. I do not know what is the problem.
However, I noticed that these eight programs have been created in the
bin directory:
ensemble_stat
mode
pcp_combine
stat_analysis
grid_stat
mode_analysis
point_stat
wavelet_stat
Do you have any idea? I have attached the make_met.log file which I
got from the last compilation.
Best Regards,
Oscar
On Tue, Jun 26, 2012 at 3:57 PM, Paul Oldenburg via RT
<met_help at ucar.edu> wrote:
> Oscar,
>
> You need to tell the linker the location of the curl library on your
system. One way to do this is to find it, perhaps
> using the find command, and then add its location to the list of
CXX_LIBS in your user_defs.mk file. On my system, it
> is located in /usr/lib, so I would add it like this:
>
> CXX_LIBS = -L/usr/lib
>
> If the curl library has not been installed on your system, you must
do so first and then specify the location.
>
> Was your instance of NetCDF compiled using the same compiler family
as you are trying to compile MET with
> (/opt/intel/Compiler/11.1/064/bin/intel64/icpc)? Also, make sure
that you are disabling NetCDF4 when building the
> NetCDF instance that you link from MET. Instructions on how to do
this can be found on the MET website Online Tutorial
>
(http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/req_libs.php).
In particular, use the
> following line to configure the NetCDF instance before compiling it:
>
> ./configure --prefix=/netcdf/install/path --disable-netcdf-4
>
> If you have any further questions, please let me know.
>
> Thanks,
>
> Paul
>
>
> On 06/26/2012 02:37 PM, Oscar Chimborazo via RT wrote:
>>
>> Tue Jun 26 14:37:06 2012: Request 57158 was acted upon.
>> Transaction: Ticket created by ochimborazo at gmail.com
>> Queue: met_help
>> Subject: compilation problem
>> Owner: Nobody
>> Requestors: ochimborazo at gmail.com
>> Status: new
>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>>
>>
>> Dear MET team,
>>
>> I have problems compiling the MET source. I have attached the
>> compilation output file. Thank you for your help.
>>
>> Best Regards,
>>
>> Oscar
>>
>
>
>
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #57158] compilation problem
From: Paul Oldenburg
Time: Fri Jun 29 08:38:17 2012
Oscar,
The reason that you have many of the binaries present in the bin/
folder is that your build made it most of the way
before failing. To fix your problem, please add the library gslcblas
to the list of linked libraries in
$MET_BASE/src/tools/other/gen_poly_mask/Makefile, where $MET_BASE
contains the name of the base MET installation folder
on your system. You can do this by changing line 96 of that file from
this:
-lm -lnetcdf_c++ -lnetcdf -lgsl \
to this:
-lm -lnetcdf_c++ -lnetcdf -lgsl -lgslcblas \
Then, save and close the Makefile. You should not have to do a "make
clean" after making this change, just try "make"
from the top-level MET directory. Please let me know if you have any
other problems.
Thanks,
Paul
On 06/28/2012 04:38 PM, Oscar Chimborazo via RT wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>
> Hi Paul,
>
> I did what you told me but It didn't work, I found in an old post
that
> a recommendation is remove the -static option from the CXX_FLAGS and
I
> did it together with your suggestion, but I got other problems now
> with the GSL package. I compile the package with the same compilers
> that I am using to compile MET. I do not know what is the problem.
> However, I noticed that these eight programs have been created in
the
> bin directory:
>
> ensemble_stat
> mode
> pcp_combine
> stat_analysis
> grid_stat
> mode_analysis
> point_stat
> wavelet_stat
>
> Do you have any idea? I have attached the make_met.log file which I
> got from the last compilation.
>
> Best Regards,
>
> Oscar
>
>
> On Tue, Jun 26, 2012 at 3:57 PM, Paul Oldenburg via RT
> <met_help at ucar.edu> wrote:
>> Oscar,
>>
>> You need to tell the linker the location of the curl library on
your system. One way to do this is to find it, perhaps
>> using the find command, and then add its location to the list of
CXX_LIBS in your user_defs.mk file. On my system, it
>> is located in /usr/lib, so I would add it like this:
>>
>> CXX_LIBS = -L/usr/lib
>>
>> If the curl library has not been installed on your system, you must
do so first and then specify the location.
>>
>> Was your instance of NetCDF compiled using the same compiler family
as you are trying to compile MET with
>> (/opt/intel/Compiler/11.1/064/bin/intel64/icpc)? Also, make sure
that you are disabling NetCDF4 when building the
>> NetCDF instance that you link from MET. Instructions on how to do
this can be found on the MET website Online Tutorial
>>
(http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/req_libs.php).
In particular, use the
>> following line to configure the NetCDF instance before compiling
it:
>>
>> ./configure --prefix=/netcdf/install/path --disable-netcdf-4
>>
>> If you have any further questions, please let me know.
>>
>> Thanks,
>>
>> Paul
>>
>>
>> On 06/26/2012 02:37 PM, Oscar Chimborazo via RT wrote:
>>>
>>> Tue Jun 26 14:37:06 2012: Request 57158 was acted upon.
>>> Transaction: Ticket created by ochimborazo at gmail.com
>>> Queue: met_help
>>> Subject: compilation problem
>>> Owner: Nobody
>>> Requestors: ochimborazo at gmail.com
>>> Status: new
>>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>>>
>>>
>>> Dear MET team,
>>>
>>> I have problems compiling the MET source. I have attached the
>>> compilation output file. Thank you for your help.
>>>
>>> Best Regards,
>>>
>>> Oscar
>>>
>>
>>
>>
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #57158] compilation problem
From: Paul Oldenburg
Time: Fri Jun 29 08:43:53 2012
Oscar,
I have discovered that you will have to make similar changes (adding
-lgslcblas) to the following two Makefiles:
$MET_BASE/src/tools/other/madis2nc/Makefile
$MET_BASE/src/tools/other/plot_point_obs/Makefile
Sorry for the inconvenience, these changes will be included in a
forthcoming patch for METv4.0. Please let me know if
you have any questions.
Paul
On 06/29/2012 08:38 AM, Paul Oldenburg wrote:
> Oscar,
>
> The reason that you have many of the binaries present in the bin/
folder is that your build made it most of the way
> before failing. To fix your problem, please add the library
gslcblas to the list of linked libraries in
> $MET_BASE/src/tools/other/gen_poly_mask/Makefile, where $MET_BASE
contains the name of the base MET installation folder
> on your system. You can do this by changing line 96 of that file
from this:
>
> -lm -lnetcdf_c++ -lnetcdf -lgsl \
>
> to this:
>
> -lm -lnetcdf_c++ -lnetcdf -lgsl -lgslcblas \
>
> Then, save and close the Makefile. You should not have to do a
"make clean" after making this change, just try "make"
> from the top-level MET directory. Please let me know if you have
any other problems.
>
> Thanks,
>
> Paul
>
>
> On 06/28/2012 04:38 PM, Oscar Chimborazo via RT wrote:
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>>
>> Hi Paul,
>>
>> I did what you told me but It didn't work, I found in an old post
that
>> a recommendation is remove the -static option from the CXX_FLAGS
and I
>> did it together with your suggestion, but I got other problems now
>> with the GSL package. I compile the package with the same compilers
>> that I am using to compile MET. I do not know what is the problem.
>> However, I noticed that these eight programs have been created in
the
>> bin directory:
>>
>> ensemble_stat
>> mode
>> pcp_combine
>> stat_analysis
>> grid_stat
>> mode_analysis
>> point_stat
>> wavelet_stat
>>
>> Do you have any idea? I have attached the make_met.log file which I
>> got from the last compilation.
>>
>> Best Regards,
>>
>> Oscar
>>
>>
>> On Tue, Jun 26, 2012 at 3:57 PM, Paul Oldenburg via RT
>> <met_help at ucar.edu> wrote:
>>> Oscar,
>>>
>>> You need to tell the linker the location of the curl library on
your system. One way to do this is to find it, perhaps
>>> using the find command, and then add its location to the list of
CXX_LIBS in your user_defs.mk file. On my system, it
>>> is located in /usr/lib, so I would add it like this:
>>>
>>> CXX_LIBS = -L/usr/lib
>>>
>>> If the curl library has not been installed on your system, you
must do so first and then specify the location.
>>>
>>> Was your instance of NetCDF compiled using the same compiler
family as you are trying to compile MET with
>>> (/opt/intel/Compiler/11.1/064/bin/intel64/icpc)? Also, make sure
that you are disabling NetCDF4 when building the
>>> NetCDF instance that you link from MET. Instructions on how to do
this can be found on the MET website Online Tutorial
>>>
(http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/req_libs.php).
In particular, use the
>>> following line to configure the NetCDF instance before compiling
it:
>>>
>>> ./configure --prefix=/netcdf/install/path --disable-netcdf-4
>>>
>>> If you have any further questions, please let me know.
>>>
>>> Thanks,
>>>
>>> Paul
>>>
>>>
>>> On 06/26/2012 02:37 PM, Oscar Chimborazo via RT wrote:
>>>>
>>>> Tue Jun 26 14:37:06 2012: Request 57158 was acted upon.
>>>> Transaction: Ticket created by ochimborazo at gmail.com
>>>> Queue: met_help
>>>> Subject: compilation problem
>>>> Owner: Nobody
>>>> Requestors: ochimborazo at gmail.com
>>>> Status: new
>>>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>>>>
>>>>
>>>> Dear MET team,
>>>>
>>>> I have problems compiling the MET source. I have attached the
>>>> compilation output file. Thank you for your help.
>>>>
>>>> Best Regards,
>>>>
>>>> Oscar
>>>>
>>>
>>>
>>>
>
>
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #57158] compilation problem
From: Paul Oldenburg
Time: Fri Jun 29 10:57:04 2012
Oscar,
I just deployed a patch for METv4.0 that you can find on the MET
homepage at
http://www.dtcenter.org/met/users/support/known_issues/METv4.0/index.php.
The patch has the changes to the three
Makefiles that I described to you. You can either choose to make the
changes by hand or apply the patch to your MET tree.
Paul
On 06/29/2012 08:43 AM, Paul Oldenburg wrote:
> Oscar,
>
> I have discovered that you will have to make similar changes (adding
-lgslcblas) to the following two Makefiles:
>
> $MET_BASE/src/tools/other/madis2nc/Makefile
> $MET_BASE/src/tools/other/plot_point_obs/Makefile
>
> Sorry for the inconvenience, these changes will be included in a
forthcoming patch for METv4.0. Please let me know if
> you have any questions.
>
> Paul
>
>
> On 06/29/2012 08:38 AM, Paul Oldenburg wrote:
>> Oscar,
>>
>> The reason that you have many of the binaries present in the bin/
folder is that your build made it most of the way
>> before failing. To fix your problem, please add the library
gslcblas to the list of linked libraries in
>> $MET_BASE/src/tools/other/gen_poly_mask/Makefile, where $MET_BASE
contains the name of the base MET installation folder
>> on your system. You can do this by changing line 96 of that file
from this:
>>
>> -lm -lnetcdf_c++ -lnetcdf -lgsl \
>>
>> to this:
>>
>> -lm -lnetcdf_c++ -lnetcdf -lgsl -lgslcblas \
>>
>> Then, save and close the Makefile. You should not have to do a
"make clean" after making this change, just try "make"
>> from the top-level MET directory. Please let me know if you have
any other problems.
>>
>> Thanks,
>>
>> Paul
>>
>>
>> On 06/28/2012 04:38 PM, Oscar Chimborazo via RT wrote:
>>>
>>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>>>
>>> Hi Paul,
>>>
>>> I did what you told me but It didn't work, I found in an old post
that
>>> a recommendation is remove the -static option from the CXX_FLAGS
and I
>>> did it together with your suggestion, but I got other problems now
>>> with the GSL package. I compile the package with the same
compilers
>>> that I am using to compile MET. I do not know what is the problem.
>>> However, I noticed that these eight programs have been created in
the
>>> bin directory:
>>>
>>> ensemble_stat
>>> mode
>>> pcp_combine
>>> stat_analysis
>>> grid_stat
>>> mode_analysis
>>> point_stat
>>> wavelet_stat
>>>
>>> Do you have any idea? I have attached the make_met.log file which
I
>>> got from the last compilation.
>>>
>>> Best Regards,
>>>
>>> Oscar
>>>
>>>
>>> On Tue, Jun 26, 2012 at 3:57 PM, Paul Oldenburg via RT
>>> <met_help at ucar.edu> wrote:
>>>> Oscar,
>>>>
>>>> You need to tell the linker the location of the curl library on
your system. One way to do this is to find it, perhaps
>>>> using the find command, and then add its location to the list of
CXX_LIBS in your user_defs.mk file. On my system, it
>>>> is located in /usr/lib, so I would add it like this:
>>>>
>>>> CXX_LIBS = -L/usr/lib
>>>>
>>>> If the curl library has not been installed on your system, you
must do so first and then specify the location.
>>>>
>>>> Was your instance of NetCDF compiled using the same compiler
family as you are trying to compile MET with
>>>> (/opt/intel/Compiler/11.1/064/bin/intel64/icpc)? Also, make sure
that you are disabling NetCDF4 when building the
>>>> NetCDF instance that you link from MET. Instructions on how to
do this can be found on the MET website Online Tutorial
>>>>
(http://www.dtcenter.org/met/users/support/online_tutorial/METv3.1/compilation/req_libs.php).
In particular, use the
>>>> following line to configure the NetCDF instance before compiling
it:
>>>>
>>>> ./configure --prefix=/netcdf/install/path --disable-netcdf-4
>>>>
>>>> If you have any further questions, please let me know.
>>>>
>>>> Thanks,
>>>>
>>>> Paul
>>>>
>>>>
>>>> On 06/26/2012 02:37 PM, Oscar Chimborazo via RT wrote:
>>>>>
>>>>> Tue Jun 26 14:37:06 2012: Request 57158 was acted upon.
>>>>> Transaction: Ticket created by ochimborazo at gmail.com
>>>>> Queue: met_help
>>>>> Subject: compilation problem
>>>>> Owner: Nobody
>>>>> Requestors: ochimborazo at gmail.com
>>>>> Status: new
>>>>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=57158 >
>>>>>
>>>>>
>>>>> Dear MET team,
>>>>>
>>>>> I have problems compiling the MET source. I have attached the
>>>>> compilation output file. Thank you for your help.
>>>>>
>>>>> Best Regards,
>>>>>
>>>>> Oscar
>>>>>
>>>>
>>>>
>>>>
>>
>>
>
>
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