[Met_help] error messages while compiling MET

[John Halley Gotway]

Marlous,

I see that you're compiling MET using the Portland Group compilers and are linking to a NetCDF library built for use with WRF.  The error messages you're seeing indicate that the NetCDF build to which
you're linking is not compatible with the PGI compilers you're using for building MET.  The most likely explanation for this is that the NetCDF library may not have been built with the PGI compilers.

I'd suggest building another version of the NetCDF library, making sure the build it using the PGI compilers.  And then try rebuilding MET using that updated NetCDF library.

Here's how you'd build NetCDF using the PGI compilers.  From the top-level NetCDF directory and using the C-shell:

csh
setenv CC /usr/pgi/linux86/7.1-6/bin/pgcc
setenv CXX /usr/pgi/linux86/7.1-6/bin/pgCC
setenv FC ""
setenv F90 ""
./configure --prefix=/path/where/you/want/netcdf/installed
make
make install

I usually just "install" the NetCDF library in the same directory as the source code.  But you're welcome to put it wherever you'd like.

Hope that helps.  Good luck.

John Halley Gotway
johnhg at ucar.edu

Marlous Jonker wrote:
> Hello!
> 
>  
> 
> While compiling the MET software I encountered the error messages below.
> The Makefile I used is in the attachment. 
> 
> I am pretty stuck on how to solve the error, so I hope you have some
> ideas to tackle the problem.
> 
>  
> 
> Kind regards,
> 
>  
> 
> Marlous Jonker
> 
>  
> 
> -------------------------------------------------------------------
> 
>   Marlous Jonker
> 
>   Meteorological Researcher
> 
>   Meteo Consult BV, Wageningen, the Netherlands
> 
>   Tel: +31 (0)317 399872
> 
>   Email: M.Jonker at weer.nl
> 
> -------------------------------------------------------------------
> 
>  
> 
> Error messages encountered:
> 
>  
> 
>  
> 
> *** Making pcp_combine application ***
> 
>  
> 
>  
> 
> /usr/pgi/linux86/7.1-6/bin/pgCC -o pcp_combine pcp_combine.cc \
> 
>         -Bstatic -Msecond_underscore
> -DMET_BASE=\"/home/mm5/MET/METv2.0\" \
> 
>         -I../../lib -I/home/mm5/WRF/netcdf/netcdf-4.0/include
> -I/home/mm5/MET/gsl/gsl-1.9/include \
> 
>         -L../../lib -L/home/mm5/WRF/netcdf/netcdf-4.0/lib
> -L/home/mm5/MET/gsl/gsl-1.9/lib \
> 
>         -lvx_met_util -lvx_analysis_util -lvx_wrfdata -lvx_met_util \
> 
>         -lvx_contable -lvx_grib_classes \
> 
>         -lvx_econfig -lvx_gsl_prob -lgsl \
> 
>         -lvx_plot_util  -lvx_render -lvx_pxm -lvx_color -lvx_ps -lvx_afm
> \
> 
>         -lvx_data_grids -lvx_gnomon -lvx_nav -lvx_cal -lvx_util
> -lvx_math -lm \
> 
>         -lnetcdf_c++ -lnetcdf \
> 
>  
> 
> pcp_combine.cc:
> 
> pcp_combine.o: In function `write_netcdf__FLT1iR10GribRecord':
> 
> pcp_combine.cc:(.text+0x3421): undefined reference to `NcFile::__ct(char
> const *, NcFile::FileMode, unsigned int *, unsigned int,
> NcFile::FileFormat)'
> 
> pcp_combine.cc:(.text+0x3466): undefined reference to `NcFile::is_valid(
> const(void))'
> 
> pcp_combine.cc:(.text+0x34f4): undefined reference to
> `NcFile::close(void)'
> 
> pcp_combine.cc:(.text+0x369a): undefined reference to
> `NcFile::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3927): undefined reference to
> `NcFile::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3b5b): undefined reference to
> `NcVar::add_att(char const *, int)'
> 
> pcp_combine.cc:(.text+0x3ba7): undefined reference to
> `NcVar::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3bf3): undefined reference to
> `NcVar::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3c42): undefined reference to
> `NcVar::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3c66): undefined reference to
> `NcVar::add_att(char const *, float)'
> 
> pcp_combine.cc:(.text+0x3d4e): undefined reference to
> `NcVar::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3d74): undefined reference to
> `NcVar::add_att(char const *, long)'
> 
> pcp_combine.cc:(.text+0x3e46): undefined reference to
> `NcVar::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3e6c): undefined reference to
> `NcVar::add_att(char const *, long)'
> 
> pcp_combine.cc:(.text+0x3eee): undefined reference to
> `NcVar::add_att(char const *, char const *)'
> 
> pcp_combine.cc:(.text+0x3f11): undefined reference to
> `NcVar::add_att(char const *, int)'
> 
> pcp_combine.cc:(.text+0x3f7f): undefined reference to `NcVar::put(float
> const *, long, long, long, long, long)'
> 
> pcp_combine.cc:(.text+0x3fef): undefined reference to
> `NcFile::close(void)'
> 
> ../../lib/libvx_met_util.a(write_netcdf.o): In function
> `write_netcdf_proj(NcFile *, Grid const &)':
> 
> write_netcdf.cc:(.text+0x71): undefined reference to
> `NcFile::add_att(char const *, char const *)'
> 
> write_netcdf.cc:(.text+0xe6): undefined reference to
> `NcFile::add_att(char const *, char const *)'
> 
> write_netcdf.cc:(.text+0x135): undefined reference to
> `NcFile::add_att(char const *, char const *)'
> 
> write_netcdf.cc:(.text+0x17f): undefined reference to
> `NcFile::add_att(char const *, char const *)'
> 
> write_netcdf.cc:(.text+0x1c9): undefined reference to
> `NcFile::add_att(char const *, char const *)'
> 
> ../../lib/libvx_met_util.a(write_netcdf.o):write_netcdf.cc:(.text+0x20c)
> : more undefined references to `NcFile::add_att(char const *, char const
> *)' follow
> 
> make[3]: *** [pcp_combine] Error 2
> 
> make[2]: *** [all] Error 2
> 
> make[1]: *** [targets] Error 2
> 
> make: *** [all] Error 2
> 
> 
> 
> 
> ------------------------------------------------------------------------
> 
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