[Met_help] Re: Success and a fix!
Joe Galewsky
galewsky at unm.edu
Fri Jul 11 15:53:53 MDT 2008
Yeah, it's wierd . .. PB2NC works fine, as do all of the other tests.
No errors. Anyway, I am looking forward to working with this. I will
be at NCAR for the next 2 weeks, working with MMM. I hope to drop by
for the MET part of the WRF tutorial.
The Makefile is attached . . .
thx,
--Joe
John Halley Gotway wrote:
> Joe,
>
> Interesting. Thanks for the info. I wasn't aware of that issue.
>
> In looking at the man page for the gfortran compiler, it looks like
> using the "-ff2c" compiler flag will generate code compatible with the
> F2C library. I wonder if supplying that in the Makefile on the
> "FC_FLAGS" line would solve anything?
>
> Can you tell me how exactly did you "remove" -lf2c? Did you change it
> to -lg2c? Would you mind sending me a copy of your Makefile that was
> successful in building MET? I'm just trying to figure out what's going
> on. Because I'm able to build MET on my machine using gfortran and
> linking to the F2C. Perhaps the F2C library to which I'm linking
> differs in some way from the one you were trying to link to.
>
> But I'm glad it finally compiled for you. Have you run the test scripts
> yet. In particular, are you able to run the "scripts/test_pb2nc.sh" or
> does it error out. If you're getting an error, you'll likely need to
> reblock the PrepBufr observation files in the
> METv1.1/data/sample_obs/prepbufr directory. We recently posted a MET
> Online tutorial (this morning actually). This page discusses running
> the cwordsh utility:
> http://www.dtcenter.org/met/users/support/online_tutorial/pb2nc/index.php
>
> Thanks,
> John
>
> Joe Galewsky wrote:
>> John:
>>
>> I got MET to compile - I don't fully understand it, but the issue is
>> apparently related to the fact that gfortran is incompatible with f2c.
>> When I simply remove the -lf2c altogether, the compilation proceeds to
>> completion and all of the tests run successfully. This is referenced
>> in a few places on the web . . . it might be worth documenting this,
>> as I am surely not the only person dealing with gfortran.
>>
>> thx,
>>
>> Joe
>>
>> John Halley Gotway wrote:
>>> Joe,
>>>
>>> Hmmm. I'm not sure. I'm asking around to see if anyone has any
>>> suggestions here.
>>>
>>> In the meantime, if you have access to the GNU compilers, you could
>>> try building MET with them. MET was developed and tested primarily
>>> with the GNU compilers. You could use g++ for the C++ compiler and
>>> either g77 or gfortran for the FORTRAN compiler. The only downside
>>> however is that you'd need to build versions of the required
>>> libraries using the GNU compilers as well.
>>>
>>> John
>>>
>>> Joe Galewsky wrote:
>>>> John:
>>>>
>>>> Thanks for your quick reply! I just tried the compilation of the
>>>> beta version, and I am still getting the same error on pb2nc, posted
>>>> below. I am also attaching the Makefile I used. Someone posted the
>>>> exact same error message on the Portland Group web site, so I am not
>>>> the only one with this problem. Everything else compiled
>>>> more-or-less smoothly up to this point (a few warning messages).
>>>>
>>>> Thanks for any assistance you can provide!
>>>>
>>>> --Joe
>>>>
>>>>
>>>>
>>>> pgCC -o pb2nc pb2nc.cc pb2nc_Conf.o numpbmsg.o openpb.o readpb.o
>>>> dumppb.o \
>>>> -Bstatic -DMET_BASE=\"/users/galewsky/METv1.1beta9\" \
>>>> -I../../lib -I/users/galewsky/netcdf-3.6.2/include
>>>> -I/users/galewsky/gsl -I/users/galewsky/bufr -I/users/galewsky/libf2c \
>>>> -L../../lib -L/users/galewsky/netcdf-3.6.2/lib
>>>> -L/users/galewsky/gsl/libs -L/users/galewsky/bufr
>>>> -L/users/galewsky/libf2c \
>>>> -lvx_met_util -lvx_analysis_util -lvx_wrfdata -lvx_met_util \
>>>> -lvx_contable -lvx_grib_classes \
>>>> -lvx_econfig -lvx_gsl_prob -lgsl \
>>>> -lvx_plot_util -lvx_render -lvx_pxm -lvx_color -lvx_ps -lvx_afm \
>>>> -lvx_data_grids -lvx_gnomon -lvx_nav -lvx_cal -lvx_util -lvx_math -lm \
>>>> -lnetcdf_c++ -lnetcdf \
>>>> -lbufr -lf2c -lpgftnrtl -lrt -lpthread
>>>> pb2nc.cc:
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 55: error:
>>>> the global scope has no "isalnum"
>>>> using _STLP_VENDOR_CSTD::isalnum;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 56: error:
>>>> the global scope has no "isalpha"
>>>> using _STLP_VENDOR_CSTD::isalpha;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 57: error:
>>>> the global scope has no "iscntrl"
>>>> using _STLP_VENDOR_CSTD::iscntrl;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 58: error:
>>>> the global scope has no "isdigit"
>>>> using _STLP_VENDOR_CSTD::isdigit;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 59: error:
>>>> the global scope has no "isgraph"
>>>> using _STLP_VENDOR_CSTD::isgraph;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 60: error:
>>>> the global scope has no "islower"
>>>> using _STLP_VENDOR_CSTD::islower;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 61: error:
>>>> the global scope has no "isprint"
>>>> using _STLP_VENDOR_CSTD::isprint;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 62: error:
>>>> the global scope has no "ispunct"
>>>> using _STLP_VENDOR_CSTD::ispunct;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 63: error:
>>>> the global scope has no "isspace"
>>>> using _STLP_VENDOR_CSTD::isspace;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 64: error:
>>>> the global scope has no "isupper"
>>>> using _STLP_VENDOR_CSTD::isupper;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 65: error:
>>>> the global scope has no "isxdigit"
>>>> using _STLP_VENDOR_CSTD::isxdigit;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 66: error:
>>>> the global scope has no "tolower"
>>>> using _STLP_VENDOR_CSTD::tolower;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line
>>>> 67: error:
>>>> the global scope has no "toupper"
>>>> using _STLP_VENDOR_CSTD::toupper;
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 43: error:
>>>> identifier "_ISspace" is undefined
>>>> space = _Locale_SPACE,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 44: error:
>>>> identifier "_ISprint" is undefined
>>>> print = _Locale_PRINT,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 45: error:
>>>> identifier "_IScntrl" is undefined
>>>> cntrl = _Locale_CNTRL,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 46: error:
>>>> identifier "_ISupper" is undefined
>>>> upper = _Locale_UPPER,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 47: error:
>>>> identifier "_ISlower" is undefined
>>>> lower = _Locale_LOWER,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 48: error:
>>>> identifier "_ISalpha" is undefined
>>>> alpha = _Locale_ALPHA,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 49: error:
>>>> identifier "_ISdigit" is undefined
>>>> digit = _Locale_DIGIT,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 50: error:
>>>> identifier "_ISpunct" is undefined
>>>> punct = _Locale_PUNCT,
>>>> ^
>>>>
>>>> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h",
>>>> line 51: error:
>>>> identifier "_ISxdigit" is undefined
>>>> xdigit = _Locale_XDIGIT,
>>>> ^
>>>>
>>>> 22 errors detected in the compilation of "pb2nc.cc".
>>>> make[3]: *** [pb2nc] Error 2
>>>> make[2]: *** [all] Error 2
>>>> make[1]: *** [targets] Error 2
>>>> make: *** [all] Error 2
>>>>
>>>>
>>>>
>>>>
>>>> John Halley Gotway wrote:
>>>>> Joe,
>>>>>
>>>>> We're actually getting ready to release the next version of MET -
>>>>> version 1.1 by the end of the week. We're basically just
>>>>> finalizing the updates to the User's Guide now. Why don't you try
>>>>> building a beta version of this next release and see if you're
>>>>> still having the same problems. We can keep our fingers crossed
>>>>> that the problem will have been resolved.
>>>>>
>>>>> You can access the beta version at:
>>>>> ftp://ftp.rap.ucar.edu/incoming/irap/johnhg/METv1.1beta9.20080702.tar.gz
>>>>>
>>>>>
>>>>> The User's Guide in there isn't updated yet for METv1.1.
>>>>>
>>>>> You'll first copy over Makefile_pgi to Makefile - and then
>>>>> configure that top-level Makefile with the paths to the library
>>>>> dependencies.
>>>>> Then do: make >& make_met.log
>>>>>
>>>>> Please let me know how it goes. If you run into problems with the
>>>>> build, please send back a copy of the Makefile you're using and a
>>>>> copy of the build log (make_met.log). That'll help diagnose the
>>>>> problems.
>>>>>
>>>>> Thanks,
>>>>> John Halley-Gotway
>>>>> johnhg at ucar.edu
>>>>>
>>>>> Joe Galewsky wrote:
>>>>>> Hi:
>>>>>>
>>>>>> I'm trying to compile METV1.0 on our Linux system with the
>>>>>> Portland Group compilers, version 7.0.2, and am getting fatal
>>>>>> errors compiling pb2nc. I made the changes indicated in your
>>>>>> patched makefile, but it's still barfing. The error messages are
>>>>>> identical to those listed here on the PG website:
>>>>>> http://www.pgroup.com/userforum/viewtopic.php?p=4531&sid=b0bbd1c7125df703be228aa3228f8546
>>>>>>
>>>>>>
>>>>>> Do you have any suggestions on how to successfully compile this
>>>>>> code? Can I provide you with further information? All of the
>>>>>> other libraries and dependencies have been successfully compiled.
>>>>>>
>>>>>> Thanks,
>>>>>>
>>>>>> Joe Galewsky
>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
--
----------
Joseph Galewsky
Earth and Planetary Sciences
Northrop Hall Room 222
MSC 03 2040
1 University of New Mexico
Albuquerque, NM 87131-0001
phone: 505-277-2361
fax: 505-277-8843
email: galewsky at unm.edu
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# Makefile for the Model Evaluation Tools Project
# for use with the GNU Compilers
#
###############################################################################
###############################################################################
#
# Begin Variables to be modified before building
#
###############################################################################
# Path to GNU Make command
MAKE = /usr/bin/make
# Architecture flags
ARCH_FLAGS =
# Path to the C++ Compiler
# C++ compiler flags
# Any additional required libraries
CXX = /usr/bin/g++
CXX_FLAGS = -Wall -Wshadow -static -g -m32
CXX_LIBS =
# Path to the Fortran Compiler
# Fortran compiler flags
# Any additional required libraries
FC = /usr/bin/gfortran
FC_FLAGS = -Wall -Wshadow -static -g -m32 -ff2c
FC_LIBS = -lgfortran
# Make print options
PRINT_OPTS = --no-print-directory
# Top level directory for the NetCDF library
# NetCDF include directory specified as: -I/your/include/path
# NetCDF library directory specified as: -L/your/library/path
NETCDF_BASE = /users/galewsky/32bit/netcdf-3.6.2
NETCDF_INCS = -I$(NETCDF_BASE)/include
NETCDF_LIBS = -L$(NETCDF_BASE)/lib
# Top level directory for BUFRLIB
# BUFRLIB include directory specified as: -I/your/include/path
# BUFRLIB library directory specified as: -L/your/library/path
BUFR_BASE = /users/galewsky/bufr
BUFR_INCS = -I$(BUFR_BASE)
BUFR_LIBS = -L$(BUFR_BASE)
# Top level directory for the GNU Scientific Library (GSL) if it's not
# installed in a standard location.
# GSL include directory specified as: -I/your/include/path
# GSL library directory specified as: -L/your/library/path
GSL_BASE = /users/galewsky/gsl
GSL_INCS = -I$(GSL_BASE)/include
GSL_LIBS = -L$(GSL_BASE)/lib
# Top level directory for the F2C or G2C Library if it's not installed in a
# standard location.
# F2C include directory specified as: -I/your/include/path
# F2C library directory containing libf2c.a or libg2c.a and specified as:
# -L/your/library/path
# Name of the library to be used: -lf2c or -lg2c
F2C_BASE =
F2C_INCS =
F2C_LIBS =
F2C_LIBNAME =
# Optional flags to disable the compilation of MET tools
# Specify a non-zero value to disable the compilation of the tool
DISABLE_PCP_COMBINE = 0
DISABLE_MODE = 0
DISABLE_GRID_STAT = 0
DISABLE_PB2NC = 0
DISABLE_ASCII2NC = 0
DISABLE_POINT_STAT = 0
DISABLE_VSDB_ANALYSIS = 0
DISABLE_MODE_ANALYSIS = 0
###############################################################################
#
# End Variables to be modified before building
#
###############################################################################
###############################################################################
#
# Export variables to be used by submakes
#
###############################################################################
export MAKE
export ARCH_FLAGS
export CXX
export CXX_FLAGS
export CXX_LIBS
export FC
export FC_FLAGS
export FC_LIBS
export MET_BASE
export NETCDF_INCS
export NETCDF_LIBS
export BUFR_INCS
export BUFR_LIBS
export GSL_INCS
export GSL_LIBS
export F2C_INCS
export F2C_LIBS
export F2C_LIBNAME
# Top level directory for the MET build
MET_BASE = ${PWD}
export MET_BASE
###############################################################################
#
# End export variables to be used by submakes
#
###############################################################################
FAKES = all clean libs targets
LIB_DIR = lib
INC_DIR = lib
SRC_DIR = src
OUT_DIR = out
VX_AFM = $(LIB_DIR)/vx_afm
VX_ANALYSIS_UTIL= $(LIB_DIR)/vx_analysis_util
VX_CAL = $(LIB_DIR)/vx_cal
VX_COLOR = $(LIB_DIR)/vx_color
VX_CONTABLE = $(LIB_DIR)/vx_contable
VX_DATA_GRIDS = $(LIB_DIR)/vx_data_grids
VX_ECONFIG = $(LIB_DIR)/vx_econfig
VX_GNOMON = $(LIB_DIR)/vx_gnomon
VX_GRIB_CLASSES = $(LIB_DIR)/vx_grib_classes
VX_GSL_PROB = $(LIB_DIR)/vx_gsl_prob
VX_MATH = $(LIB_DIR)/vx_math
VX_MET_UTIL = $(LIB_DIR)/vx_met_util
VX_NAV = $(LIB_DIR)/vx_nav
VX_PLOT_UTIL = $(LIB_DIR)/vx_plot_util
VX_PS = $(LIB_DIR)/vx_ps
VX_PXM = $(LIB_DIR)/vx_pxm
VX_RENDER = $(LIB_DIR)/vx_render
VX_UTIL = $(LIB_DIR)/vx_util
VX_WRFDATA = $(LIB_DIR)/vx_wrfdata
VX_WRFMODE = $(LIB_DIR)/vx_wrfmode
PCP_COMBINE = $(SRC_DIR)/pcp_combine
MODE = $(SRC_DIR)/mode
GRID_STAT = $(SRC_DIR)/grid_stat
PB2NC = $(SRC_DIR)/pb2nc
ASCII2NC = $(SRC_DIR)/ascii2nc
POINT_STAT = $(SRC_DIR)/point_stat
VSDB_ANALYSIS = $(SRC_DIR)/vsdb_analysis
MODE_ANALYSIS = $(SRC_DIR)/mode_analysis
all:
@ echo
@ echo "*** Making the Model Evaluation Tools Project ***"
@ echo
@ $(MAKE) libs $(PRINT_OPTS)
@ $(MAKE) targets $(PRINT_OPTS)
@ echo
@ echo "*** Finished Making the Model Evaluation Tools Project ***"
@ echo
libs:
@ cd $(VX_AFM); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_ANALYSIS_UTIL);$(MAKE) $(PRINT_OPTS)
@ cd $(VX_CAL); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_COLOR); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_CONTABLE); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_DATA_GRIDS); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_ECONFIG); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_GNOMON); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_GRIB_CLASSES); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_GSL_PROB); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_MATH); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_MET_UTIL); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_NAV); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_PLOT_UTIL); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_PS); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_PXM); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_RENDER); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_UTIL); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_WRFDATA); $(MAKE) $(PRINT_OPTS)
@ cd $(VX_WRFMODE); $(MAKE) $(PRINT_OPTS)
targets:
ifeq ($(DISABLE_PCP_COMBINE), 0)
@ cd $(PCP_COMBINE); $(MAKE) $(PRINT_OPTS)
endif
ifeq ($(DISABLE_MODE), 0)
@ cd $(MODE); $(MAKE) $(PRINT_OPTS)
endif
ifeq ($(DISABLE_GRID_STAT), 0)
@ cd $(GRID_STAT); $(MAKE) $(PRINT_OPTS)
endif
ifeq ($(DISABLE_PB2NC), 0)
@ cd $(PB2NC); $(MAKE) $(PRINT_OPTS)
endif
ifeq ($(DISABLE_ASCII2NC), 0)
@ cd $(ASCII2NC); $(MAKE) $(PRINT_OPTS)
endif
ifeq ($(DISABLE_POINT_STAT), 0)
@ cd $(POINT_STAT); $(MAKE) $(PRINT_OPTS)
endif
ifeq ($(DISABLE_VSDB_ANALYSIS), 0)
@ cd $(VSDB_ANALYSIS); $(MAKE) $(PRINT_OPTS)
endif
ifeq ($(DISABLE_MODE_ANALYSIS), 0)
@ cd $(MODE_ANALYSIS); $(MAKE) $(PRINT_OPTS)
endif
clean:
@ cd $(VX_AFM); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_ANALYSIS_UTIL);$(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_CAL); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_COLOR); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_CONTABLE); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_DATA_GRIDS); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_ECONFIG); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_GNOMON); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_GRIB_CLASSES); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_GSL_PROB); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_MATH); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_MET_UTIL); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_NAV); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_PLOT_UTIL); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_PS); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_PXM); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_RENDER); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_UTIL); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_WRFDATA); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VX_WRFMODE); $(MAKE) clean $(PRINT_OPTS)
@ cd $(PCP_COMBINE); $(MAKE) clean $(PRINT_OPTS)
@ cd $(MODE); $(MAKE) clean $(PRINT_OPTS)
@ cd $(GRID_STAT); $(MAKE) clean $(PRINT_OPTS)
@ cd $(PB2NC); $(MAKE) clean $(PRINT_OPTS)
@ cd $(ASCII2NC); $(MAKE) clean $(PRINT_OPTS)
@ cd $(POINT_STAT); $(MAKE) clean $(PRINT_OPTS)
@ cd $(VSDB_ANALYSIS); $(MAKE) clean $(PRINT_OPTS)
@ cd $(MODE_ANALYSIS); $(MAKE) clean $(PRINT_OPTS)
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