[Met_help] Problems with compiling pb2nc . . . even with the patch
John Halley Gotway
johnhg at rap.ucar.edu
Wed Jul 9 09:28:39 MDT 2008
Joe,
Hmmm. I'm not sure. I'm asking around to see if anyone has any suggestions here.
In the meantime, if you have access to the GNU compilers, you could try building MET with them. MET was developed and tested primarily with the GNU compilers. You could use g++ for the C++ compiler
and either g77 or gfortran for the FORTRAN compiler. The only downside however is that you'd need to build versions of the required libraries using the GNU compilers as well.
John
Joe Galewsky wrote:
> John:
>
> Thanks for your quick reply! I just tried the compilation of the beta
> version, and I am still getting the same error on pb2nc, posted below. I
> am also attaching the Makefile I used. Someone posted the exact same
> error message on the Portland Group web site, so I am not the only one
> with this problem. Everything else compiled more-or-less smoothly up to
> this point (a few warning messages).
>
> Thanks for any assistance you can provide!
>
> --Joe
>
>
>
> pgCC -o pb2nc pb2nc.cc pb2nc_Conf.o numpbmsg.o openpb.o readpb.o
> dumppb.o \
> -Bstatic -DMET_BASE=\"/users/galewsky/METv1.1beta9\" \
> -I../../lib -I/users/galewsky/netcdf-3.6.2/include -I/users/galewsky/gsl
> -I/users/galewsky/bufr -I/users/galewsky/libf2c \
> -L../../lib -L/users/galewsky/netcdf-3.6.2/lib
> -L/users/galewsky/gsl/libs -L/users/galewsky/bufr
> -L/users/galewsky/libf2c \
> -lvx_met_util -lvx_analysis_util -lvx_wrfdata -lvx_met_util \
> -lvx_contable -lvx_grib_classes \
> -lvx_econfig -lvx_gsl_prob -lgsl \
> -lvx_plot_util -lvx_render -lvx_pxm -lvx_color -lvx_ps -lvx_afm \
> -lvx_data_grids -lvx_gnomon -lvx_nav -lvx_cal -lvx_util -lvx_math -lm \
> -lnetcdf_c++ -lnetcdf \
> -lbufr -lf2c -lpgftnrtl -lrt -lpthread
> pb2nc.cc:
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 55:
> error:
> the global scope has no "isalnum"
> using _STLP_VENDOR_CSTD::isalnum;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 56:
> error:
> the global scope has no "isalpha"
> using _STLP_VENDOR_CSTD::isalpha;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 57:
> error:
> the global scope has no "iscntrl"
> using _STLP_VENDOR_CSTD::iscntrl;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 58:
> error:
> the global scope has no "isdigit"
> using _STLP_VENDOR_CSTD::isdigit;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 59:
> error:
> the global scope has no "isgraph"
> using _STLP_VENDOR_CSTD::isgraph;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 60:
> error:
> the global scope has no "islower"
> using _STLP_VENDOR_CSTD::islower;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 61:
> error:
> the global scope has no "isprint"
> using _STLP_VENDOR_CSTD::isprint;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 62:
> error:
> the global scope has no "ispunct"
> using _STLP_VENDOR_CSTD::ispunct;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 63:
> error:
> the global scope has no "isspace"
> using _STLP_VENDOR_CSTD::isspace;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 64:
> error:
> the global scope has no "isupper"
> using _STLP_VENDOR_CSTD::isupper;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 65:
> error:
> the global scope has no "isxdigit"
> using _STLP_VENDOR_CSTD::isxdigit;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 66:
> error:
> the global scope has no "tolower"
> using _STLP_VENDOR_CSTD::tolower;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/cctype", line 67:
> error:
> the global scope has no "toupper"
> using _STLP_VENDOR_CSTD::toupper;
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 43: error:
> identifier "_ISspace" is undefined
> space = _Locale_SPACE,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 44: error:
> identifier "_ISprint" is undefined
> print = _Locale_PRINT,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 45: error:
> identifier "_IScntrl" is undefined
> cntrl = _Locale_CNTRL,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 46: error:
> identifier "_ISupper" is undefined
> upper = _Locale_UPPER,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 47: error:
> identifier "_ISlower" is undefined
> lower = _Locale_LOWER,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 48: error:
> identifier "_ISalpha" is undefined
> alpha = _Locale_ALPHA,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 49: error:
> identifier "_ISdigit" is undefined
> digit = _Locale_DIGIT,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 50: error:
> identifier "_ISpunct" is undefined
> punct = _Locale_PUNCT,
> ^
>
> "/users/system/pgi-7.0-2/linux86-64/7.0-2/include/CC/stl/_ctype.h", line
> 51: error:
> identifier "_ISxdigit" is undefined
> xdigit = _Locale_XDIGIT,
> ^
>
> 22 errors detected in the compilation of "pb2nc.cc".
> make[3]: *** [pb2nc] Error 2
> make[2]: *** [all] Error 2
> make[1]: *** [targets] Error 2
> make: *** [all] Error 2
>
>
>
>
> John Halley Gotway wrote:
>> Joe,
>>
>> We're actually getting ready to release the next version of MET -
>> version 1.1 by the end of the week. We're basically just finalizing
>> the updates to the User's Guide now. Why don't you try building a
>> beta version of this next release and see if you're still having the
>> same problems. We can keep our fingers crossed that the problem will
>> have been resolved.
>>
>> You can access the beta version at:
>> ftp://ftp.rap.ucar.edu/incoming/irap/johnhg/METv1.1beta9.20080702.tar.gz
>>
>> The User's Guide in there isn't updated yet for METv1.1.
>>
>> You'll first copy over Makefile_pgi to Makefile - and then configure
>> that top-level Makefile with the paths to the library dependencies.
>> Then do: make >& make_met.log
>>
>> Please let me know how it goes. If you run into problems with the
>> build, please send back a copy of the Makefile you're using and a copy
>> of the build log (make_met.log). That'll help diagnose the problems.
>>
>> Thanks,
>> John Halley-Gotway
>> johnhg at ucar.edu
>>
>> Joe Galewsky wrote:
>>> Hi:
>>>
>>> I'm trying to compile METV1.0 on our Linux system with the Portland
>>> Group compilers, version 7.0.2, and am getting fatal errors compiling
>>> pb2nc. I made the changes indicated in your patched makefile, but
>>> it's still barfing. The error messages are identical to those listed
>>> here on the PG website:
>>> http://www.pgroup.com/userforum/viewtopic.php?p=4531&sid=b0bbd1c7125df703be228aa3228f8546
>>>
>>>
>>> Do you have any suggestions on how to successfully compile this code?
>>> Can I provide you with further information? All of the other
>>> libraries and dependencies have been successfully compiled.
>>>
>>> Thanks,
>>>
>>> Joe Galewsky
>>>
>>>
>>
>
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