[Met_help] MET Library Issues
John Halley Gotway
johnhg at rap.ucar.edu
Wed Aug 20 11:27:09 MDT 2008
Dave,
Well I'm glad you were able to get the 64-bit version working. Compiling everything 32-bit can be tricky to ensure everything actually gets compiled the way you want.
Feel free to write with any questions or issues that arise in running MET.
Thanks,
John
Dave Radell wrote:
> Hi John,
>
> I was actually going to email you this morning--perfect timing. I
> rebuilt netCDF and still received the same error (the *.inc file was
> included in the ~/netcdf/include folder this time, however). So I
> decided to see if I went through and recompiled all the libraries in the
> 64-bit framework if it would work, and it did. So I don't have the BUFR
> capabilities right now, but everything through running the test scripts
> seems to be working okay, and the test output was generated with success.
> At some point I will go back and take a look at the 32-bit compilation.
> In thinking again about the error, I am wondering if it was something
> with the GSL library not being built correctly in 32-bit, as it looks
> like it was used in the same routine as the failed netcdf file. I also
> note that I used gsl-1.10 instead of 1.9 as you had it, though I don't
> know why that would make a difference.
>
> Thanks again for your attention and help--I'm really looking forward to
> using the program.
>
> Dave
>
> John Halley Gotway wrote:
>> Dave,
>>
>> Just wanted to check in to see if you've made any progress with
>> getting MET to compile. Did rebuilding NetCDF address the problem?
>>
>> Thanks,
>> John Halley-Gotway
>> johnhg at ucar.edu
>>
>> Dave Radell wrote:
>>
>>> Hi John,
>>>
>>> Thanks. The files you list are actually all there (which is why I
>>> thought the error was strange) except for netcdf.inc. So, I'm going to
>>> try and rebuild netcdf and see if that works.
>>>
>>> Dave
>>>
>>> John Halley Gotway wrote:
>>>
>>>> Hello Dave,
>>>>
>>>> It looks like the compiler is complaining that it can't find the
>>>> following file:
>>>> /home/wrfuser/METv1.1/METv1.1/lib/external_libs/netcdf/include/netcdfcpp.h
>>>>
>>>>
>>>>
>>>> I'm wondering when you built NetCDF, if the C++ interface was built or
>>>> not. When I do a listing of the include subdirectory for the NetCDF
>>>> library on my machine, here are the files I see:
>>>>
>>>>> ls
>>>>>
>>>> /nfs/pigpen_pd6/score/MET/MET_releases/external_libs/netcdf/netcdf-3.6.2/include
>>>>
>>>>
>>>> ncvalues.h netcdfcpp.h netcdf.h netcdf.hh netcdf.inc
>>>>
>>>> Take a look in your NetCDF include directory
>>>> (/home/wrfuser/METv1.1/METv1.1/lib/external_libs/netcdf/include) and
>>>> see if the file "netcdfcpp.h" exists in there or not.
>>>>
>>>> If not, you could try rebuilding NetCDF and make sure that the
>>>> netcdfcpp.h file exists.
>>>>
>>>> John Halley-Gotway
>>>> johnhg at ucar.edu
>>>>
>>>> Dave Radell wrote:
>>>>
>>>>> Hi,
>>>>>
>>>>> I am installing MET V1.1 on an x_86_64 machine running Linux. I have
>>>>> compiled all the required libraries (32 bit) but am having difficulty
>>>>> with one of the MET libraries as noted below (vx_contable). I am
>>>>> wondering if I'm missing a flag in the vx_contable Makefile or
>>>>> something elsewhere that's causing this. Thanks for any suggestions
>>>>> you might have.
>>>>>
>>>>> Dave
>>>>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>>>>> *
>>>>> MAKE OUTPUT:*
>>>>>
>>>>> *** Making the Model Evaluation Tools Project ***
>>>>>
>>>>>
>>>>> *** Making vx_afm Library ***
>>>>>
>>>>> /usr/bin/g++ afm.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ afm_keywords.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ afm_line.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ afm_token.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ afmkeyword_to_string.cc -Wall -Wshadow -static -g -m32
>>>>> -c -I..
>>>>> /usr/bin/g++ afmtokentype_to_string.cc -Wall -Wshadow -static -g
>>>>> -m32 -c -I..
>>>>> ar -rs libvx_afm.a afm.o afm_keywords.o afm_line.o afm_token.o
>>>>> afmkeyword_to_string.o afmtokentype_to_string.o
>>>>> ar: creating libvx_afm.a
>>>>> ranlib libvx_afm.a
>>>>>
>>>>> cp libvx_afm.a ../.
>>>>>
>>>>> *** Making vx_analysis_util Library ***
>>>>>
>>>>> /usr/bin/g++ analysis_utils.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ box.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ by_case_info.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ data_line.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ mask_poly.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ mode_atts.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ mode_job.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ mode_line.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ time_series.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ vsdb_job.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ vsdb_line.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ vsdbjobtype_to_string.cc -Wall -Wshadow -static -g
>>>>> -m32 -c -I..
>>>>> /usr/bin/g++ vsdblinetype_to_string.cc -Wall -Wshadow -static -g
>>>>> -m32 -c -I..
>>>>> ar -rs libvx_analysis_util.a analysis_utils.o box.o by_case_info.o
>>>>> data_line.o mask_poly.o mode_atts.o mode_job.o mode_line.o
>>>>> time_series.o vsdb_job.o vsdb_line.o vsdbjobtype_to_string.o
>>>>> vsdblinetype_to_string.o
>>>>> ar: creating libvx_analysis_util.a
>>>>> ranlib libvx_analysis_util.a
>>>>>
>>>>> cp libvx_analysis_util.a ../.
>>>>>
>>>>> *** Making vx_cal Library ***
>>>>>
>>>>> /usr/bin/g++ date_to_mjd.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ day_dif.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ day_of_week.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ doyhms_to_unix.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ easter.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ holiday.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ is_dst.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ is_leap_year.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ mdyhms_to_unix.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ mjd_to_date.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ time_strings.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ unix_to_mdyhms.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> ar -rs libvx_cal.a date_to_mjd.o day_dif.o day_of_week.o
>>>>> doyhms_to_unix.o easter.o holiday.o is_dst.o is_leap_year.o
>>>>> mdyhms_to_unix.o mjd_to_date.o time_strings.o unix_to_mdyhms.o
>>>>> ar: creating libvx_cal.a
>>>>> ranlib libvx_cal.a
>>>>>
>>>>> cp libvx_cal.a ../.
>>>>>
>>>>> *** Making vx_color Library ***
>>>>>
>>>>> /usr/bin/g++ cfile.tab.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ lex.color.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ vx_clist.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ vx_color.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> /usr/bin/g++ vx_ctable.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> ar -rs libvx_color.a cfile.tab.o lex.color.o vx_clist.o vx_color.o
>>>>> vx_ctable.o
>>>>> ar: creating libvx_color.a
>>>>> ranlib libvx_color.a
>>>>>
>>>>> cp libvx_color.a ../.
>>>>>
>>>>> *** Making vx_contable Library ***
>>>>>
>>>>> /usr/bin/g++ vx_contable.cc -Wall -Wshadow -static -g -m32 -c -I..
>>>>> -I/home/wrfuser/METv1.1/METv1.1/lib/external_libs/gsl-1.10/include
>>>>> -I/home/wrfuser/METv1.1/METv1.1/external_libs/netcdf/include
>>>>> /usr/bin/g++ vx_contable_stats.cc -Wall -Wshadow -static -g -m32 -c
>>>>> -I..
>>>>> -I/home/wrfuser/METv1.1/METv1.1/lib/external_libs/gsl-1.10/include
>>>>> -I/home/wrfuser/METv1.1/METv1.1/external_libs/netcdf/include
>>>>> In file included from ../vx_met_util/read_pcp_combine_netcdf.h:16,
>>>>> from ../vx_met_util/vx_met_util.h:21,
>>>>> from vx_contable_stats.cc:20:
>>>>> /home/wrfuser/METv1.1/METv1.1/lib/external_libs/netcdf/include/netcdf.hh:1:23:
>>>>>
>>>>> netcdfcpp.h: No such file or directory
>>>>> In file included from ../vx_met_util/vx_met_util.h:21,
>>>>> from vx_contable_stats.cc:20:
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:25: warning:
>>>>> `read_pcp_combine_netcdf' initialized and declared `extern'
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:25: error: variable or field
>>>>> `read_pcp_combine_netcdf' declared void
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:25: error: `NcFile' was not
>>>>> declared in this scope
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:25: error: expected
>>>>> primary-expression before ',' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:25: error: expected
>>>>> primary-expression before "const"
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:25: error: expected
>>>>> primary-expression before "char"
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:26: error: expected
>>>>> primary-expression before '&' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:26: error: expected
>>>>> primary-expression before ',' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:26: error: expected
>>>>> primary-expression before '&' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:26: error: expected
>>>>> primary-expression before ',' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:26: error: expected
>>>>> primary-expression before "int"
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:27: error: expected
>>>>> primary-expression before '&' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:27: error: expected
>>>>> primary-expression before ',' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:27: error: expected
>>>>> primary-expression before '&' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:27: error: expected
>>>>> primary-expression before ',' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:28: error: expected
>>>>> primary-expression before '&' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:28: error: expected
>>>>> primary-expression before ')' token
>>>>> ../vx_met_util/read_pcp_combine_netcdf.h:28: error: initializer
>>>>> expression list treated as compound expression
>>>>> make[3]: *** [vx_contable_stats.o] Error 1
>>>>> make[2]: *** [vx_contable_all] Error 2
>>>>> make[1]: *** [libs] Error 2
>>>>> make: *** [all] Error 2
>>>>>
>>>>>
>>>>> ****************************************************************************************************************************
>>>>>
>>>>>
>>>>> *Top level MAKEFILE:*
>>>>>
>>>>> #
>>>>> # Begin Variables to be modified before building
>>>>> #
>>>>> ###############################################################################
>>>>>
>>>>>
>>>>>
>>>>> # Path to GNU Make command
>>>>> MAKE = /usr/bin/make
>>>>>
>>>>> # Architecture flags
>>>>> ARCH_FLAGS =
>>>>>
>>>>> # Path to the C++ Compiler
>>>>> # C++ compiler flags
>>>>> # Any additional required libraries
>>>>> CXX = /usr/bin/g++
>>>>> CXX_FLAGS = -Wall -Wshadow -static -g -m32
>>>>> CXX_LIBS =
>>>>>
>>>>> # Path to the Fortran Compiler
>>>>> # Fortran compiler flags
>>>>> # Any additional required libraries
>>>>> FC = /usr/bin/g77
>>>>> FC_FLAGS = -Wall -Wshadow -static -g -m32
>>>>> FC_LIBS = # -lgfortran
>>>>>
>>>>> # Make print options
>>>>> PRINT_OPTS = --no-print-directory
>>>>>
>>>>> # Top level directory for the NetCDF library
>>>>> # NetCDF include directory specified as: -I/your/include/path
>>>>> # NetCDF library directory specified as: -L/your/library/path
>>>>> NETCDF_BASE = /home/wrfuser/METv1.1/METv1.1/external_libs/netcdf/
>>>>> NETCDF_INCS = -I$(NETCDF_BASE)/include
>>>>> NETCDF_LIBS = -L$(NETCDF_BASE)/lib
>>>>> # Top level directory for BUFRLIB
>>>>> # BUFRLIB include directory specified as: -I/your/include/path
>>>>> # BUFRLIB library directory specified as: -L/your/library/path
>>>>> BUFR_BASE = /home/wrfuser/METv1.1/METv1.1/lib/external_libs/BUFRLIB
>>>>> BUFR_INCS = -I$(BUFR_BASE)
>>>>> BUFR_LIBS = -L$(BUFR_BASE)
>>>>>
>>>>> # Top level directory for the GNU Scientific Library (GSL) if it's not
>>>>> # installed in a standard location.
>>>>> # GSL include directory specified as: -I/your/include/path
>>>>> # GSL library directory specified as: -L/your/library/path
>>>>> GSL_BASE =
>>>>> /home/wrfuser/METv1.1/METv1.1/lib/external_libs/gsl-1.10
>>>>> GSL_INCS = -I$(GSL_BASE)/include
>>>>> GSL_LIBS = -L$(GSL_BASE)/lib
>>>>>
>>>>> # Top level directory for the F2C or G2C Library if it's not
>>>>> installed in a
>>>>> # standard location.
>>>>> # F2C include directory specified as: -I/your/include/path
>>>>> # F2C library directory containing libf2c.a or libg2c.a and specified
>>>>> as:
>>>>> # -L/your/library/path
>>>>> # Name of the library to be used: -lf2c or -lg2c
>>>>> F2C_BASE = /home/wrfuser/METv1.1/METv1.1/lib/external_libs/F2C
>>>>> F2C_INCS = -I$(F2C_BASE)
>>>>> F2C_LIBS = -L$(F2C_BASE)
>>>>> F2C_LIBNAME = -lg2c
>>>>>
>>>>> # Optional flags to disable the compilation of MET tools
>>>>> # Specify a non-zero value to disable the compilation of the tool
>>>>> DISABLE_PCP_COMBINE = 0
>>>>> DISABLE_MODE = 0
>>>>> DISABLE_GRID_STAT = 0
>>>>>
>>>>> *
>>>>>
>>>>>
>>>>> *
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Met_help mailing list
>>>>> Met_help at mailman.ucar.edu
>>>>> http://mailman.ucar.edu/mailman/listinfo/met_help
>>>>>
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