[Dart-dev] DART/branches Revision: 12917
dart at ucar.edu
dart at ucar.edu
Fri Oct 26 10:56:27 MDT 2018
thoar at ucar.edu
2018-10-26 10:56:27 -0600 (Fri, 26 Oct 2018)
120
Better post-run instructions.
Removed the SourceMod description because it is explained fully
in the DART_params.csh
Modified: DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CESM2_0_DART_config
===================================================================
--- DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CESM2_0_DART_config 2018-10-26 15:00:44 UTC (rev 12916)
+++ DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CESM2_0_DART_config 2018-10-26 16:56:27 UTC (rev 12917)
@@ -254,14 +254,9 @@
4) If you stage your own inflation files, make sure you read the INFLATION section
in ${CASEROOT}/CESM_DART_config
-5) Make sure the observation directory names in
- ${CASEROOT}/assimilate.csh and/or
- ${CASEROOT}/perfect_model.csh
- match those on your system.
+5) Submit the CESM job in the normal way.
-6) Submit the CESM job in the normal way.
-
-7) You can use ${CASEROOT}/stage_cesm_files
+6) You can use ${CASEROOT}/stage_cesm_files
to stage files to restart a run.
-------------------------------------------------------------------------
Modified: DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CLM5_setup_assimilation
===================================================================
--- DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CLM5_setup_assimilation 2018-10-26 15:00:44 UTC (rev 12916)
+++ DART/branches/cesm_clm/models/clm/shell_scripts/cesm2_0/CLM5_setup_assimilation 2018-10-26 16:56:27 UTC (rev 12917)
@@ -30,8 +30,6 @@
# job settings:
#
# run_queue, run_time, st_archive_queue, st_archive_time may be changed at any time
-#
-# ==============================================================================
setenv run_queue regular
setenv run_time 00:30:00
@@ -46,7 +44,6 @@
# For list of the pre-defined component sets: ./create_newcase -list
# To create a variant compset, see the CESM documentation and carefully
# incorporate any needed changes into this script.
-# ==============================================================================
# FATAL idea to make caseroot the same dir as where this setup script is
# since the build process removes all files in the caseroot dir before
@@ -78,7 +75,6 @@
# ==============================================================================
# Preserve a copy of this script and the parameter file as it was run.
# Copy the DART setup script (CESM_DART_config) to CASEROOT.
-# ==============================================================================
set ThisFileName = $0:t
${COPY} $ThisFileName ${caseroot}/${ThisFileName}.original
@@ -241,10 +237,6 @@
set STREAMFILE_STATE3HR = datm.streams.txt.CPLHISTForcing.State3hr_complete
endif
-# I am not sure this has anything to do with our case, as we are using
-# our own forcing data ... required by changes to /glade in July 2018
-./xmlchange DIN_LOC_ROOT_CLMFORC=/glade/p/cgd/tss/CTSM_datm_forcing_data
-
# ==============================================================================
# Modify namelist templates for each instance.
#
@@ -252,7 +244,6 @@
# CLM builds its own 'finidat' value from the REFCASE variables.
#
# All of these must later on be staged with the expected filenames.
-# ==============================================================================
@ inst = 1
while ( $inst <= $num_instances )
@@ -472,30 +463,11 @@
#===============================================================================
# This example has SourceMods that enable CLM to output solar induced fluorescence
# as a diagnostic variable in the history files as "FSIF".
-#
-# Copy modified CLM codes into SourceMods
-# src.clm
-# |-- clm4_0
-# | |-- biogeochem
-# | | `-- CNBalanceCheckMod.F90
-# | `-- biogeophys
-# | |-- BalanceCheckMod.F90
-# | |-- SnowHydrologyMod.F90
-# | `-- UrbanMod.F90
-# `-- clm5_0
-# |-- biogeochem
-# | `-- CNBalanceCheckMod.F90
-# !-- biogeophys
-# ! !-- CanopyFluxesMod.F90
-# ! `-- PhotosynthesisMod.F90
-# `-- cpl
-# `-- lnd_import_export.F90
-# ==============================================================================
if ( ${use_SourceMods} == TRUE ) then
- if ( -d ~/${cesmtag}/SourceMods ) then
- ${COPY} -r ~/${cesmtag}/SourceMods/* ${caseroot}/SourceMods/ || exit 3
+ if ( -d ${SourceModDir} ) then
+ ${COPY} -r ${SourceModDir}/* ${caseroot}/SourceMods/ || exit 3
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