[Dart-dev] DART/branches Revision: 12506

[dart at ucar.edu]

raeder at ucar.edu
2018-04-11 09:59:52 -0600 (Wed, 11 Apr 2018)
254
Added CAM's CLDLIQ and CLDICE to the state_variables list.
Made model_mod.nml and work/input.nml:&model_nml more consistent.
Removed references to CAM-SE from work/input.nml.
Update comments to describe Manhattan namelist variables and 
usage patterns.




Modified: DART/branches/recam/models/cam-fv/model_mod.nml
===================================================================
--- DART/branches/recam/models/cam-fv/model_mod.nml	2018-04-10 22:28:22 UTC (rev 12505)
+++ DART/branches/recam/models/cam-fv/model_mod.nml	2018-04-11 15:59:52 UTC (rev 12506)
@@ -1,38 +1,40 @@
 
 # options for vertical localization:  'PRESSURE', 'HEIGHT', 'SCALEHEIGHT', 'LEVEL'
+# options for vertical interpolation (use_log_vertical_scale) = .false., .true.
 #
 # examples of state_variables, 5 columns per field:
 #
-#    netcdf varname, dart quantity, min clamp value, max clamp value, update or noupdate
+#    netcdf varname, dart quantity, min allowed value, max allowed value, (no)update this var
 #
-#   state_variables = 'T', 'QTY_TEMPERATURE',                'NA', 'NA', 'UPDATE',
-#                     'US','QTY_U_WIND_COMPONENT',           'NA', 'NA', 'UPDATE',
-#                     'VS','QTY_V_WIND_COMPONENT',           'NA', 'NA', 'UPDATE',
-#                     'Q', 'QTY_SPECIFIC_HUMIDITY',          'NA', 'NA', 'UPDATE',
-#                     'PS','QTY_SURFACE_PRESSURE',           'NA', 'NA', 'UPDATE',
-#                     'O', 'QTY_ATOMIC_OXYGEN_MIXING_RATIO', 'NA', 'NA', 'UPDATE',
-#                     'O2','QTY_MOLEC_OXYGEN_MIXING_RATIO',  'NA', 'NA', 'UPDATE',
-#                     'H', 'QTY_ATOMIC_H_MIXING_RATIO',      'NA', 'NA', 'UPDATE',
-#                     'Op','QTY_ION_O_MIXING_RATIO',         'NA', 'NA', 'UPDATE',
+#   state_variables = 'T', 'QTY_TEMPERATURE',                'NA', 'NA', 'UPDATE'
+#                     'US','QTY_U_WIND_COMPONENT',           'NA', 'NA', 'UPDATE'
+#                     'VS','QTY_V_WIND_COMPONENT',           'NA', 'NA', 'UPDATE'
+#                     'Q', 'QTY_SPECIFIC_HUMIDITY',          'NA', 'NA', 'UPDATE'
+#                     'CLDLIQ','QTY_CLOUD_LIQUID_WATER',     'NA', 'NA', 'UPDATE'
+#                     'CLDICE','QTY_CLOUD_ICE',              'NA', 'NA', 'UPDATE'
+#                     'PS','QTY_SURFACE_PRESURE',            'NA', 'NA', 'UPDATE'
+#                     'O', 'QTY_ATOMIC_OXYGEN_MIXING_RATIO', 'NA', 'NA', 'UPDATE'
+#                     'O2','QTY_MOLEC_OXYGEN_MIXING_RATIO',  'NA', 'NA', 'UPDATE'
+#                     'H', 'QTY_ATOMIC_H_MIXING_RATIO',      'NA', 'NA', 'UPDATE'
+#                     'Op','QTY_ION_O_MIXING_RATIO',         'NA', 'NA', 'UPDATE'
 
-# pressures are in pascals
 
 &model_nml
    cam_template_filename           = 'caminput.nc'
-   cam_phis_filename               = 'camphis.nc'
-   vertical_localization_coord     = 'PRESSURE'
-   no_assim_above_pressure         = -1.0     
-   start_damping_ramp_at_pressure  = -1.0    
+   cam_phis_filename               = 'cam_phis.nc'
+   state_variables                 = ''
+   custom_routine_to_generate_ensemble = .false.
+   fields_to_perturb               = "QTY_TEMPERATURE"
+   perturbation_amplitude          = 0.00001_r8
    assimilation_period_days        = 0
    assimilation_period_seconds     = 21600
+   vertical_localization_coord     = 'PRESSURE'
    use_log_vertical_scale          = .false.
+   no_assim_above_pressure         = -1.0      ! pascals
+   start_damping_ramp_at_pressure  = -1.0      ! pascals
    using_chemistry                 = .false.
    use_variable_mean_mass          = .false.
    suppress_grid_info_in_output    = .false.
-   custom_routine_to_generate_ensemble = .false.
-   fields_to_perturb               = "QTY_TEMPERATURE"
-   perturbation_amplitude          = 0.00001_r8
    debug_level                     = 0
-   state_variables                 = ''
 /
 

Modified: DART/branches/recam/models/cam-fv/work/input.nml
===================================================================
--- DART/branches/recam/models/cam-fv/work/input.nml	2018-04-10 22:28:22 UTC (rev 12505)
+++ DART/branches/recam/models/cam-fv/work/input.nml	2018-04-11 15:59:52 UTC (rev 12506)
@@ -1,10 +1,10 @@
 ! This namelist is set up for a single, CAM-FV, assimilation cycle 
-! using the default values as found in model_mod.f90 and CESM1_2_1_setup_{hybrid,advanced}
+! using the default values as found in model_mod.f90 and 
+! shell_scripts/cesm2_0/setup_{hybrid,advanced}
 ! starting from a single model state, which must be perturbed into an ensemble.
 ! Comments below give suggestions for setting it up for other assimilations:
 ! > continuing an assimilation (no perturbations) and/or starting from an ensemble.
-! > Setting up a CAM-SE assimilation
-! > Setting up a WACCM assimilation
+! > Setting up a WACCM(-X) assimilation
 ! > Setting up for perfect_model_obs
 !
 ! PLEASE READ
@@ -12,8 +12,7 @@
 ! https://proxy.subversion.ucar.edu/DAReS/DART/trunk/models/cam/model_mod.html
 !
 ! for recommendations on namelist settings for CAM. It has examples of configurations
-! for taking a single state and creating an ensemble, differences between using
-! the FV core or SE core ... variable resolution grids, etc.
+! for taking a single state and creating an ensemble, variable resolution grids, etc.
 
 ! ens_size, num_output_*  will be (re)set by the setup script
 
@@ -25,40 +24,18 @@
 !    inf_sd_initial_from_restart = .true.,                 .false.,
 ! Also search for 'single model state' to make changes in model_nml.
 
-! Changes for DART2.0 ("RMA" "Manhattan")
-!    To be removed:
-!       restart_in_file_name     = 'no_restart_in'
-!       restart_out_file_name    = 'no_restart_out'