[Dart-dev] DART/branches Revision: 12054

[dart at ucar.edu]

thoar at ucar.edu
2017-11-06 15:56:05 -0700 (Mon, 06 Nov 2017)
269
Consolidating all the matlab functions into something similar to the rma_trunk.
Removing the need for the third-party netCDF toolboxes.
All the observation-space tools and diagnostics are believed to be working.
All of the state-space diagnostics are probably broken.




Modified: DART/branches/mizzi/diagnostics/matlab/link_obs.m
===================================================================
--- DART/branches/mizzi/diagnostics/matlab/link_obs.m	2017-11-06 21:21:34 UTC (rev 12053)
+++ DART/branches/mizzi/diagnostics/matlab/link_obs.m	2017-11-06 22:56:05 UTC (rev 12054)
@@ -34,8 +34,7 @@
 %
 % EXAMPLE 1:
 % fname         = '/ptmp/thoar/POP/CAM/POP8/obs_epoch_001.nc';
-% fname = '/Users/thoar/svn/DART/trunk/models/POP/work/obs_epoch_001.nc';
-% ObsTypeString = 'FLOAT_TEMPERATURE';
+% ObsTypeString = 'APB_TEMPERATURE';
 % ObsCopyString = 'WOD observation';
 % CopyString    = 'prior ensemble mean';
 % QCString      = 'DART quality control';
@@ -44,9 +43,9 @@
 % link_obs(fname, ObsTypeString, ObsCopyString, CopyString, QCString, region)
 %
 % EXAMPLE 2:
-% fname         = 'obs_epoch_002.nc';
-% ObsTypeString = 'ACARS_U_WIND_COMPONENT';
-% ObsCopyString = 'observation';
+% fname         = 'obs_epoch_001.nc';
+% ObsTypeString = 'RADIOSONDE_TEMPERATURE';
+% ObsCopyString = 'NCEP BUFR observation';
 % CopyString    = 'prior ensemble mean';
 % QCString      = 'DART quality control';
 % region        = [220 300 20 60 -Inf Inf];
@@ -67,8 +66,8 @@
 % the the Workspace window to generate a spreadsheet-like view of the 
 % observations which is also linked to the data brushing.
 
-%% DART software - Copyright 2004 - 2013 UCAR. This open source software is
-% provided by UCAR, "as is", without charge, subject to all terms of use at
+%% DART software - Copyright UCAR. This open source software is provided
+% by UCAR, "as is", without charge, subject to all terms of use at
 % http://www.image.ucar.edu/DAReS/DART/DART_download
 %
 % DART $Id$
@@ -98,6 +97,13 @@
 obs.region(5)     = min(obs.z); % use observation Z to specify vertical region
 obs.region(6)     = max(obs.z);
 
+% Some observations are all at same z value. Cannot use same value for
+% upper and lower axis bounds.
+if (obs.region(5) == obs.region(6))
+    obs.region(5) = obs.region(5) - 0.5;
+    obs.region(6) = obs.region(6) + 0.5;
+end
+
 %% Now pack the data in the same fashion as the cell array of column labels.
 
 obs.lonindex  = 1;
@@ -136,7 +142,7 @@
 end
 
 %% create the linked plots
-linked_observations(obs);
+linked_observations(obs)
 
 
 % <next few lines under version control, do not edit>
@@ -143,4 +149,3 @@
 % $URL$
 % $Revision$
 % $Date$
-

Modified: DART/branches/mizzi/diagnostics/matlab/plot_bias_xxx_profile.m
===================================================================
--- DART/branches/mizzi/diagnostics/matlab/plot_bias_xxx_profile.m	2017-11-06 21:21:34 UTC (rev 12053)
+++ DART/branches/mizzi/diagnostics/matlab/plot_bias_xxx_profile.m	2017-11-06 22:56:05 UTC (rev 12054)
@@ -32,7 +32,7 @@
 %            Default is to plot all available observation types.
 %
 % OUTPUT: 'plotdat' is a structure containing what was plotted.
-%         A .pdf of each graphic is created. Each .pdf has a name that 
+%         A .pdf of each graphic is created. Each .pdf has a name that
 %         reflects the variable, quantity, and region being plotted.
 %
 % EXAMPLE 1: All the observation types possible are plotted in separate figures.
@@ -48,8 +48,8 @@
 % obsname = 'RADIOSONDE_U_WIND_COMPONENT';
 % plotdat = plot_bias_xxx_profile(fname, copy, 'obsname', obsname);
 
-%% DART software - Copyright 2004 - 2013 UCAR. This open source software is
-% provided by UCAR, "as is", without charge, subject to all terms of use at
+%% DART software - Copyright UCAR. This open source software is provided
+% by UCAR, "as is", without charge, subject to all terms of use at
 % http://www.image.ucar.edu/DAReS/DART/DART_download
 %
 % DART $Id$
@@ -63,9 +63,14 @@
 
 addRequired(p,'fname', at ischar);
 addRequired(p,'copy', at ischar);
-addParamValue(p,'obsname',default_obsname, at ischar);
-parse(p, fname, copy, varargin{:});
+if (exist('inputParser/addParameter','file') == 2)
+    addParameter(p,'obsname',default_obsname, at ischar);
+else
+    addParamValue(p,'obsname',default_obsname, at ischar);