[Dart-dev] DART/branches Revision: 10894

[dart at ucar.edu]

nancy at ucar.edu
2017-01-13 15:18:50 -0700 (Fri, 13 Jan 2017)
188
fix the initialization of the stages (output first, then nulls).
make dopplerfold consistent with filter_mod.

update the filter.nml file to match the code,
and update the docs to match.




Modified: DART/branches/rma_fixed_filenames/filter/filter.html
===================================================================
--- DART/branches/rma_fixed_filenames/filter/filter.html	2017-01-13 22:17:50 UTC (rev 10893)
+++ DART/branches/rma_fixed_filenames/filter/filter.html	2017-01-13 22:18:50 UTC (rev 10894)
@@ -701,50 +701,49 @@
 <div class=namelist>
 <pre>
 &amp;filter_nml
-   async                    = 0,
-   adv_ens_command          = "./advance_model.csh",
-   ens_size                 = 20,
-   start_from_restart       = .false.,
-   output_restart           = .false.,
-   obs_sequence_in_name     = "obs_seq.out",
-   obs_sequence_out_name    = "obs_seq.final",
-   restart_in_file_name     = "filter_ics",
-   restart_out_file_name    = "filter_restart",
-   init_time_days           = 0,
-   init_time_seconds        = 0,
-   first_obs_days           = -1,
-   first_obs_seconds        = -1,
-   last_obs_days            = -1,
-   last_obs_seconds         = -1,
-   num_output_state_members = 0,
-   num_output_obs_members   = 0,
-   output_interval          = 1,
-   num_groups               = 1,
-   input_qc_threshold       =  3.0,
-   outlier_threshold        = -1.0,
-   enable_special_outlier_code = .false.,
-   output_forward_op_errors = .false.,
-   output_restart_mean      = .false.,
-   output_timestamps        = .false.,
-   output_inflation         = .true.,
-   trace_execution          = .false.,
-   silence                  = .false.,
+   async                        = 0,
+   adv_ens_command              = "./advance_model.csh",
+   ens_size                     = 20,
+   stages_to_write              = 'output'
+   output_restarts              = .true.,
+   output_mean                  = .true.,
+   output_sd                    = .true.,
+   single_file_in               = .false.,
+   single_file_out              = .false.,
+   input_restart_file_list      = 'null'
+   output_restart_file_list     = 'null',
+   obs_sequence_in_name         = "obs_seq.out",
+   obs_sequence_out_name        = "obs_seq.final",
+   init_time_days               = 0,
+   init_time_seconds            = 0,
+   first_obs_days               = -1,
+   first_obs_seconds            = -1,
+   last_obs_days                = -1,
+   last_obs_seconds             = -1,
+   num_output_state_members     = 0,
+   num_output_obs_members       = 0,
+   output_interval              = 1,
+   num_groups                   = 1,
+   output_forward_op_errors     = .false.,
+   output_timestamps            = .false.,
+   trace_execution              = .false.,
+   silence                      = .false.,
+   distributed_state            = .true.,
+   write_all_stages_at_end      = .false. 
+   perturb_from_single_instance = .false.,
+   perturbation_amplitude       = 0.2,
 
-   inf_flavor                  = 0,                       0,
-   inf_initial_from_restart    = .false.,                 .false.,
-   inf_sd_initial_from_restart = .false.,                 .false.,
-   inf_output_restart          = .false.,                 .false.,
-   inf_deterministic           = .true.,                  .true.,
-   inf_in_file_name            = 'not_initialized',       'not_initialized',
-   inf_out_file_name           = 'not_initialized',       'not_initialized',
-   inf_diag_file_name          = 'not_initialized',       'not_initialized',
-   inf_initial                 = 1.0,                     1.0,
-   inf_sd_initial              = 0.0,                     0.0,
-   inf_damping                 = 1.0,                     1.0,
-   inf_lower_bound             = 1.0,                     1.0,
-   inf_upper_bound             = 1000000.0,               1000000.0,
-   inf_sd_lower_bound          = 0.0,                     0.0
-/
+   inf_flavor                   = 0,                       0,
+   inf_initial_from_restart     = .false.,                 .false.,
+   inf_sd_initial_from_restart  = .false.,                 .false.,
+   inf_deterministic            = .true.,                  .true.,
+   inf_initial                  = 1.0,                     1.0,
+   inf_sd_initial               = 0.0,                     0.0,
+   inf_damping                  = 1.0,                     1.0,
+   inf_lower_bound              = 1.0,                     1.0,
+   inf_upper_bound              = 1000000.0,               1000000.0,
+   inf_sd_lower_bound           = 0.0,                     0.0
+ /
 </pre>
 </div>
 
@@ -755,7 +754,7 @@
 Particular options to be aware of are:
 async, ens_size, cutoff (localization radius), inflation flavor, outlier_threshold,
 restart filenames (including inflation), obs_sequence_in_name, horiz_dist_only,