[Dart-dev] DART/branches Revision: 12156

[dart at ucar.edu]

thoar at ucar.edu
2017-12-01 14:08:09 -0700 (Fri, 01 Dec 2017)
105
Adding a script to submit multiple dependent jobs.
Each phase can use a separate number of tasks/nodes.




Index: DART/branches/rma_trunk/models/ROMS/shell_scripts/advance_ensemble.csh.template
===================================================================
--- DART/branches/rma_trunk/models/ROMS/shell_scripts/advance_ensemble.csh.template	2017-12-01 17:46:06 UTC (rev 12155)
+++ DART/branches/rma_trunk/models/ROMS/shell_scripts/advance_ensemble.csh.template	2017-12-01 21:08:09 UTC (rev 12156)

Property changes on: DART/branches/rma_trunk/models/ROMS/shell_scripts/advance_ensemble.csh.template
___________________________________________________________________
Deleted: svn:executable
## -1 +0,0 ##
-*
\ No newline at end of property
Modified: DART/branches/rma_trunk/models/ROMS/shell_scripts/cycle.csh.template
===================================================================
--- DART/branches/rma_trunk/models/ROMS/shell_scripts/cycle.csh.template	2017-12-01 17:46:06 UTC (rev 12155)
+++ DART/branches/rma_trunk/models/ROMS/shell_scripts/cycle.csh.template	2017-12-01 21:08:09 UTC (rev 12156)
@@ -161,14 +161,6 @@
    # Create a ROMS POSTERIOR file that will be updated by DART and
    # tag the output with the model time.
 
-#  set OCEAN_TIME_STRING = `ncdump -v ocean_time ${DAI_FILE} | grep '^ ocean_time = '`
-#  set OCEAN_TIME = `echo $OCEAN_TIME_STRING | sed -e "s#[=;a-z_ ]##g"`
-
-#  set ROMS_PRIOR     = `printf %s_%04d_%d.nc ${RST_ROOT} $instance $OCEAN_TIME`
-#  set ROMS_POSTERIOR = `printf roms_posterior_%04d_%d.nc $instance $OCEAN_TIME`
-#  set ROMS_OBSFILE   = `printf %s_%04d_%d.nc ${OBS_ROOT} $instance $OCEAN_TIME`
-#  set SAFETY         = `printf roms_dai_original_%04d_%d.nc $instance $OCEAN_TIME`
-
    set DSTART_STRING = `ncdump -v dstart ${DAI_FILE} | grep '^ dstart = '`
    set DSTART = `echo $DSTART_STRING | sed -e "s#[=;a-z_ ]##g"`
 
@@ -385,13 +377,11 @@
 # a (single) ROMS input file is required to satisfy 'static_init_model()'.
 # Any one will do.
 
-#ln -sf instance_0001/roms_posterior_????_${OCEAN_TIME}.nc MyDAINAME
 ln -sf instance_0001/roms_posterior_????_${DSTART}.nc MyDAINAME
 
 # 1) Collect all the ROMS_OBSFILEs into a list of input files
 #    and then convert them to a single DART observation sequence file.
 
-#ls -1 instance_*/${OBS_ROOT}*_${OCEAN_TIME}.nc  >! precomputed_files.txt
 ls -1 instance_*/${OBS_ROOT}*_${DSTART}.nc  >! precomputed_files.txt
 
 ./convert_roms_obs  || exit 2
@@ -401,7 +391,6 @@
 #    (make sure all instances of ROMS advanced successfully)
 #    DART (filter) will modify these files in-place.
 
-#ls -1 instance_*/roms_posterior_????_${OCEAN_TIME}.nc  >! restart_files.txt
 ls -1 instance_*/roms_posterior_????_${DSTART}.nc  >! restart_files.txt
 
 ${LAUNCHCMD} ./filter || exit 3
@@ -419,7 +408,6 @@
    if (  -e $FILE ) then
       set FEXT  = $FILE:e
       set FBASE = $FILE:r
-#     \mv -v $FILE ${FBASE}.${OCEAN_TIME}.${FEXT}
       \mv -v $FILE ${FBASE}.${DSTART}.${FEXT}
    else
       echo "$FILE does not exist, no need to take action."
@@ -429,7 +417,6 @@
 
 # Tag the observation file with the valid time of the model state.
 
-#\mv -v obs_seq.final             obs_seq.final.${OCEAN_TIME}
 \mv -v obs_seq.final             obs_seq.final.${DSTART}
 
 #==============================================================================


Property changes on: DART/branches/rma_trunk/models/ROMS/shell_scripts/cycle.csh.template
___________________________________________________________________
Deleted: svn:executable
## -1 +0,0 ##
-*
\ No newline at end of property
Modified: DART/branches/rma_trunk/models/ROMS/shell_scripts/run_filter.csh.template
===================================================================
--- DART/branches/rma_trunk/models/ROMS/shell_scripts/run_filter.csh.template	2017-12-01 17:46:06 UTC (rev 12155)
+++ DART/branches/rma_trunk/models/ROMS/shell_scripts/run_filter.csh.template	2017-12-01 21:08:09 UTC (rev 12156)
@@ -285,10 +285,8 @@
 # a (single) ROMS input file is required to satisfy 'static_init_model()'.
 # Any one will do.
 
-#ln -sf instance_0001/roms_posterior_????_${OCEAN_TIME}.nc MyDAINAME
 ln -sf instance_0001/roms_posterior_????_${DSTART}.nc MyDAINAME
 
-#ls -1 instance_*/${OBS_ROOT}*_${OCEAN_TIME}.nc  >! precomputed_files.txt
 ls -1 instance_*/${OBS_ROOT}*_${DSTART}.nc  >! precomputed_files.txt
 
 ./convert_roms_obs  || exit 2
@@ -301,7 +299,6 @@
 #    (make sure all instances of ROMS advanced successfully)
 #    DART (filter) will modify these files in-place.
 
-#ls -1 instance_*/roms_posterior_????_${OCEAN_TIME}.nc  >! restart_files.txt
 ls -1 instance_*/roms_posterior_????_${DSTART}.nc  >! restart_files.txt
 
 ${LAUNCHCMD} ./filter || exit 3
@@ -319,7 +316,6 @@
    if (  -e $FILE ) then