[Dart-dev] [5443] DART/branches/development/models/cam/work: the input files i was using on hopper for the Zagar
nancy at ucar.edu
nancy at ucar.edu
Wed Dec 14 15:15:32 MST 2011
Revision: 5443
Author: nancy
Date: 2011-12-14 15:15:31 -0700 (Wed, 14 Dec 2011)
Log Message:
-----------
the input files i was using on hopper for the Zagar
assimilation run.
Added Paths:
-----------
DART/branches/development/models/cam/work/input_1.nml
DART/branches/development/models/cam/work/input_n.nml
-------------- next part --------------
Added: DART/branches/development/models/cam/work/input_1.nml
===================================================================
--- DART/branches/development/models/cam/work/input_1.nml (rev 0)
+++ DART/branches/development/models/cam/work/input_1.nml 2011-12-14 22:15:31 UTC (rev 5443)
@@ -0,0 +1,263 @@
+&assim_model_nml
+ write_binary_restart_files = .true.
+ netcdf_large_file_support = .true.
+/
+
+
+&assim_tools_nml
+ filter_kind = 1
+ cutoff = 0.20
+ sort_obs_inc = .false.
+ spread_restoration = .false.
+ sampling_error_correction = .true.
+ print_every_nth_obs = 3000
+ adaptive_localization_threshold = -1
+/
+
+
+&cam_to_dart_nml
+ cam_to_dart_input_file = 'caminput.nc'
+ cam_to_dart_output_file = 'dart_ics'
+/
+
+
+&cov_cutoff_nml
+ select_localization = 1
+/
+
+
+&dart_to_cam_nml
+ dart_to_cam_input_file = 'temp_ic'
+ dart_to_cam_output_file = 'caminput.nc'
+ advance_time_present = .false.
+/
+
+
+&ensemble_manager_nml
+ single_restart_file_in = .true.
+ single_restart_file_out = .false.
+ perturbation_amplitude = 0.0
+/
+
+
+&filter_nml
+ async = 0
+ tasks_per_model_advance = 1
+ adv_ens_command = "no_model_advance"
+ ens_size = 80
+ start_from_restart = .false.
+ output_restart = .true.
+ obs_sequence_in_name = "obs_seq.out"
+ obs_sequence_out_name = "obs_seq.final"
+ restart_in_file_name = "filter_ic_old.0001"
+ restart_out_file_name = "filter_ic_new"
+ init_time_days = -1
+ init_time_seconds = -1
+ first_obs_days = -1
+ first_obs_seconds = -1
+ last_obs_days = -1
+ last_obs_seconds = -1
+ num_output_state_members = 80
+ num_output_obs_members = 0
+ output_interval = 1
+ num_groups = 1
+ input_qc_threshold = 4.0
+ outlier_threshold = 3.0
+ output_inflation = .false.
+ output_timestamps = .true.
+ output_forward_op_errors = .false.
+ trace_execution = .false.
+ silence = .false.
+ inf_flavor = 0, 0
+ inf_initial_from_restart = .false., .false.
+ inf_sd_initial_from_restart = .false., .false.
+ inf_output_restart = .true., .true.
+ inf_deterministic = .true., .true.
+ inf_in_file_name = 'prior_inf_ic_old', 'post_inf_ic_old'
+ inf_out_file_name = 'prior_inf_ic_new', 'post_inf_ic_new'
+ inf_diag_file_name = 'prior_inf_diag', 'post_inf_diag'
+ inf_initial = 1.0, 1.0
+ inf_sd_initial = 0.1, 0.1
+ inf_damping = 1.0, 1.0
+ inf_lower_bound = 1.0, 1.0
+ inf_upper_bound = 1000.0, 1000.0
+ inf_sd_lower_bound = 0.1, 0.0
+/
+
+
+&location_nml
+ horiz_dist_only = .false.
+ vert_normalization_pressure = 100000.0
+ vert_normalization_height = 10000.0
+ vert_normalization_level = 26.0
+ approximate_distance = .true.
+ nlon = 141
+ nlat = 72
+ output_box_info = .false.
+/
+
+
+&model_nml
+ output_state_vector = .false.
+ model_version = '4.0.1'
+ model_config_file = 'caminput.nc'
+ state_num_0d = 0
+ state_num_1d = 0
+ state_num_2d = 1
+ state_num_3d = 6
+ state_names_2d = 'PS'
+ state_names_3d = 'T','US','VS','Q','CLDLIQ','CLDICE'
+ which_vert_1d = 0
+ which_vert_2d = -1
+ which_vert_3d = 6*1
+ pert_names = 'T'
+ pert_sd = 1.e-3
+ pert_base_vals = -888888.0d0
+ highest_obs_pressure_mb = 1.0
+ highest_state_pressure_mb = 1.0
+ max_obs_lat_degree = 89.0
+ time_step_seconds = 43200
+ time_step_days = 0
+ print_details = .false.
+/
+
+
+&mpi_utilities_nml
+/
+
+
+&obs_diag_nml
+ obs_sequence_name = 'obs_0001/obs_seq.final'
+ first_bin_center = 2008, 8, 1,12, 0, 0
+ last_bin_center = 2008, 9, 1, 0, 0, 0
+ bin_separation = 0, 0, 0,12, 0, 0
+ bin_width = 0, 0, 0,12, 0, 0
+ time_to_skip = 0, 0, 1, 0, 0, 0
+ max_num_bins = 1000
+ rat_cri = 3.0
+ input_qc_threshold = 4.0
+ plevel = 1000.,850.,700.,500.,400.,300.,200.,150.,100.,50.
+ nregions = 4
+ lonlim1 = 0.0, 0.0, 0.0, 235.0
+ lonlim2 = 360.0, 360.0, 360.0, 295.0
+ latlim1 = 20.0, -80.0, -20.0, 25.0
+ latlim2 = 80.0, -20.0, 20.0, 55.0
+ reg_names = 'Northern Hemisphere', 'Southern Hemisphere', 'Tropics', 'North America'
+ print_mismatched_locs = .false.
+ print_obs_locations = .false.
+ verbose = .false.
+/
+
+
+&obs_kind_nml
+ assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE',
+ 'RADIOSONDE_U_WIND_COMPONENT',
+ 'RADIOSONDE_V_WIND_COMPONENT'
+/
+
+
+&obs_sequence_nml
+ write_binary_obs_sequence = .false.
+/
+
+
+&obs_sequence_tool_nml
+ num_input_files = 2
+ filename_seq = 'obs_seq.one', 'obs_seq.two'
+ filename_out = 'obs_seq.processed'
+ print_only = .false.
+ first_obs_days = -1
+ first_obs_seconds = -1
+ last_obs_days = -1
+ last_obs_seconds = -1
+ min_lat = -90.0
+ max_lat = 90.0
+ min_lon = 0.0
+ max_lon = 360.0
+ gregorian_cal = .true.,
+/
+
+
+&perfect_model_obs_nml
+ start_from_restart = .true.
+ output_restart = .true.
+ async = 0
+ tasks_per_model_advance = 1
+ init_time_days = -1
+ init_time_seconds = -1
+ first_obs_days = -1
+ first_obs_seconds = -1
+ last_obs_days = -1
+ last_obs_seconds = -1
+ obs_window_days = -1
+ obs_window_seconds = -1
+ output_timestamps = .false.
+ trace_execution = .true.
+ output_forward_op_errors = .false.
+ print_every_nth_obs = 3000
+ silence = .false.
+ output_interval = 1
+ restart_in_file_name = "perfect_ic_old"
+ restart_out_file_name = "perfect_ic_new"
+ obs_seq_in_file_name = "obs_seq.in"
+ obs_seq_out_file_name = "obs_seq.out"
+ adv_ens_command = "no_advance_model"
+/
+
+
+&preprocess_nml
+ input_obs_kind_mod_file = '../../../obs_kind/DEFAULT_obs_kind_mod.F90'
+ output_obs_kind_mod_file = '../../../obs_kind/obs_kind_mod.f90'
+ input_obs_def_mod_file = '../../../obs_def/DEFAULT_obs_def_mod.F90'
+ output_obs_def_mod_file = '../../../obs_def/obs_def_mod.f90'
+ input_files = '../../../obs_def/obs_def_gps_mod.f90',
+ '../../../obs_def/obs_def_AIRS_mod.f90',
+ '../../../obs_def/obs_def_altimeter_mod.f90',
+ '../../../obs_def/obs_def_reanalysis_bufr_mod.f90',
+ '../../../obs_def/obs_def_eval_mod.f90',
+ '../../../obs_def/obs_def_QuikSCAT_mod.f90'
+/
+
+
+®_factor_nml
+ select_regression = 1
+ input_reg_file = "time_mean_reg"
+ save_reg_diagnostics = .false.
+ reg_diagnostics_file = 'reg_diagnostics'
+/
+
+
+&restart_file_utility_nml
+ input_file_name = "filter_restart"
+ output_file_name = "filter_updated_restart"
+ ens_size = 1
+ single_restart_file_in = .true.
+ single_restart_file_out = .true.
+ write_binary_restart_files = .true.
+ overwrite_data_time = .false.
+ new_data_days = -1
+ new_data_secs = -1
+ input_is_model_advance_file = .false.
+ output_is_model_advance_file = .false.
+ overwrite_advance_time = .false.
+ new_advance_days = -1
+ new_advance_secs = -1
+/
+
+
+&smoother_nml
+ num_lags = 0
+ start_from_restart = .false.
+ output_restart = .false.
+ restart_in_file_name = 'smoother_ics'
+ restart_out_file_name = 'smoother_restart'
+/
+
+
+&utilities_nml
+ termlevel = 1
+ module_details = .false.
+ logfilename = 'dart_log.out'
+ nmlfilename = 'dart_log.nml'
+/
+
Added: DART/branches/development/models/cam/work/input_n.nml
===================================================================
--- DART/branches/development/models/cam/work/input_n.nml (rev 0)
+++ DART/branches/development/models/cam/work/input_n.nml 2011-12-14 22:15:31 UTC (rev 5443)
@@ -0,0 +1,263 @@
+&assim_model_nml
+ write_binary_restart_files = .true.
+ netcdf_large_file_support = .true.
+/
+
+
+&assim_tools_nml
+ filter_kind = 1
+ cutoff = 0.20
+ sort_obs_inc = .false.
+ spread_restoration = .false.
+ sampling_error_correction = .true.
+ print_every_nth_obs = 3000
+ adaptive_localization_threshold = -1
+/
+
+
+&cam_to_dart_nml
+ cam_to_dart_input_file = 'caminput.nc'
+ cam_to_dart_output_file = 'dart_ics'
+/
+
+
+&cov_cutoff_nml
+ select_localization = 1
+/
+
+
+&dart_to_cam_nml
+ dart_to_cam_input_file = 'temp_ic'
+ dart_to_cam_output_file = 'caminput.nc'
+ advance_time_present = .false.
+/
+
+
+&ensemble_manager_nml
+ single_restart_file_in = .false.
+ single_restart_file_out = .false.
+ perturbation_amplitude = 0.0
+/
+
+
+&filter_nml
+ async = 0
+ tasks_per_model_advance = 1
+ adv_ens_command = "no_model_advance"
+ ens_size = 80
+ start_from_restart = .true.
+ output_restart = .true.
+ obs_sequence_in_name = "obs_seq.out"
+ obs_sequence_out_name = "obs_seq.final"
+ restart_in_file_name = "filter_ic_old"
+ restart_out_file_name = "filter_ic_new"
+ init_time_days = -1
+ init_time_seconds = -1
+ first_obs_days = -1
+ first_obs_seconds = -1
+ last_obs_days = -1
+ last_obs_seconds = -1
+ num_output_state_members = 80
+ num_output_obs_members = 0
+ output_interval = 1
+ num_groups = 1
+ input_qc_threshold = 4.0
+ outlier_threshold = 3.0
+ output_inflation = .false.
+ output_timestamps = .true.
+ output_forward_op_errors = .false.
+ trace_execution = .false.
+ silence = .false.
+ inf_flavor = 0, 0
+ inf_initial_from_restart = .false., .false.
+ inf_sd_initial_from_restart = .false., .false.
+ inf_output_restart = .true., .true.
+ inf_deterministic = .true., .true.
+ inf_in_file_name = 'prior_inf_ic_old', 'post_inf_ic_old'
+ inf_out_file_name = 'prior_inf_ic_new', 'post_inf_ic_new'
+ inf_diag_file_name = 'prior_inf_diag', 'post_inf_diag'
+ inf_initial = 1.0, 1.0
+ inf_sd_initial = 0.1, 0.1
+ inf_damping = 1.0, 1.0
+ inf_lower_bound = 1.0, 1.0
+ inf_upper_bound = 1000.0, 1000.0
+ inf_sd_lower_bound = 0.1, 0.0
+/
+
+
+&location_nml
+ horiz_dist_only = .false.
+ vert_normalization_pressure = 100000.0
+ vert_normalization_height = 10000.0
+ vert_normalization_level = 26.0
+ approximate_distance = .true.
+ nlon = 141
+ nlat = 72
+ output_box_info = .false.
+/
+
+
+&model_nml
+ output_state_vector = .false.
+ model_version = '4.0.1'
+ model_config_file = 'caminput.nc'
+ state_num_0d = 0
+ state_num_1d = 0
+ state_num_2d = 1
+ state_num_3d = 6
+ state_names_2d = 'PS'
+ state_names_3d = 'T','US','VS','Q','CLDLIQ','CLDICE'
+ which_vert_1d = 0
+ which_vert_2d = -1
+ which_vert_3d = 6*1
+ pert_names = ''
+ pert_sd = -888888.0d0
+ pert_base_vals = -888888.0d0
+ highest_obs_pressure_mb = 1.0
+ highest_state_pressure_mb = 1.0
+ max_obs_lat_degree = 89.0
+ time_step_seconds = 43200
+ time_step_days = 0
+ print_details = .false.
+/
+
+
+&mpi_utilities_nml
+/
+
+
+&obs_diag_nml
+ obs_sequence_name = 'obs_0001/obs_seq.final'
+ first_bin_center = 2008, 8, 1,12, 0, 0
+ last_bin_center = 2008, 9, 1, 0, 0, 0
+ bin_separation = 0, 0, 0,12, 0, 0
+ bin_width = 0, 0, 0,12, 0, 0
+ time_to_skip = 0, 0, 1, 0, 0, 0
+ max_num_bins = 1000
+ rat_cri = 3.0
+ input_qc_threshold = 4.0
+ plevel = 1000.,850.,700.,500.,400.,300.,200.,150.,100.,50.
+ nregions = 4
+ lonlim1 = 0.0, 0.0, 0.0, 235.0
+ lonlim2 = 360.0, 360.0, 360.0, 295.0
+ latlim1 = 20.0, -80.0, -20.0, 25.0
+ latlim2 = 80.0, -20.0, 20.0, 55.0
+ reg_names = 'Northern Hemisphere', 'Southern Hemisphere', 'Tropics', 'North America'
+ print_mismatched_locs = .false.
+ print_obs_locations = .false.
+ verbose = .false.
+/
+
+
+&obs_kind_nml
+ assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE',
+ 'RADIOSONDE_U_WIND_COMPONENT',
+ 'RADIOSONDE_V_WIND_COMPONENT'
+/
+
+
+&obs_sequence_nml
+ write_binary_obs_sequence = .false.
+/
+
+
+&obs_sequence_tool_nml
+ num_input_files = 2
+ filename_seq = 'obs_seq.one', 'obs_seq.two'
+ filename_out = 'obs_seq.processed'
+ print_only = .false.
+ first_obs_days = -1
+ first_obs_seconds = -1
+ last_obs_days = -1
+ last_obs_seconds = -1
+ min_lat = -90.0
+ max_lat = 90.0
+ min_lon = 0.0
+ max_lon = 360.0
+ gregorian_cal = .true.,
+/
+
+
+&perfect_model_obs_nml
+ start_from_restart = .true.
+ output_restart = .true.
+ async = 0
+ tasks_per_model_advance = 1
+ init_time_days = -1
+ init_time_seconds = -1
+ first_obs_days = -1
+ first_obs_seconds = -1
+ last_obs_days = -1
+ last_obs_seconds = -1
+ obs_window_days = -1
+ obs_window_seconds = -1
+ output_timestamps = .false.
+ trace_execution = .true.
+ output_forward_op_errors = .false.
+ print_every_nth_obs = 3000
+ silence = .false.
+ output_interval = 1
+ restart_in_file_name = "perfect_ic_old"
+ restart_out_file_name = "perfect_ic_new"
+ obs_seq_in_file_name = "obs_seq.in"
+ obs_seq_out_file_name = "obs_seq.out"
+ adv_ens_command = "no_advance_model"
+/
+
+
+&preprocess_nml
+ input_obs_kind_mod_file = '../../../obs_kind/DEFAULT_obs_kind_mod.F90'
+ output_obs_kind_mod_file = '../../../obs_kind/obs_kind_mod.f90'
+ input_obs_def_mod_file = '../../../obs_def/DEFAULT_obs_def_mod.F90'
+ output_obs_def_mod_file = '../../../obs_def/obs_def_mod.f90'
+ input_files = '../../../obs_def/obs_def_gps_mod.f90',
+ '../../../obs_def/obs_def_AIRS_mod.f90',
+ '../../../obs_def/obs_def_altimeter_mod.f90',
+ '../../../obs_def/obs_def_reanalysis_bufr_mod.f90',
+ '../../../obs_def/obs_def_eval_mod.f90',
+ '../../../obs_def/obs_def_QuikSCAT_mod.f90'
+/
+
+
+®_factor_nml
+ select_regression = 1
+ input_reg_file = "time_mean_reg"
+ save_reg_diagnostics = .false.
+ reg_diagnostics_file = 'reg_diagnostics'
+/
+
+
+&restart_file_utility_nml
+ input_file_name = "filter_restart"
+ output_file_name = "filter_updated_restart"
+ ens_size = 1
+ single_restart_file_in = .true.
+ single_restart_file_out = .true.
+ write_binary_restart_files = .true.
+ overwrite_data_time = .false.
+ new_data_days = -1
+ new_data_secs = -1
+ input_is_model_advance_file = .false.
+ output_is_model_advance_file = .false.
+ overwrite_advance_time = .false.
+ new_advance_days = -1
+ new_advance_secs = -1
+/
+
+
+&smoother_nml
+ num_lags = 0
+ start_from_restart = .false.
+ output_restart = .false.
+ restart_in_file_name = 'smoother_ics'
+ restart_out_file_name = 'smoother_restart'
+/
+
+
+&utilities_nml
+ termlevel = 1
+ module_details = .false.
+ logfilename = 'dart_log.out'
+ nmlfilename = 'dart_log.nml'
+/
+
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