[Dart-dev] [4427] DART/trunk/models/lorenz_96/shell_scripts/run_filter.lynx.sh: Initial version of a run script for the NCAR Cray system

[nancy at ucar.edu]

Revision: 4427
Author:   nancy
Date:     2010-07-15 17:10:33 -0600 (Thu, 15 Jul 2010)
Log Message:
-----------
Initial version of a run script for the NCAR Cray system
called 'lynx'.  It is running the MOAB/Torque batch system,
requires sh or ksh submit scripts, and does not mount the
user home directories on the execution nodes.  The mpi
run command is 'aprun'. Any files that need to be accessed
after filter starts must be copied to /ptmp at the start
of the script (or beforehand) before calling 'aprun'.
Eventually this script should be generalized but it is
finally working and i want it in subversion someplace!

Added Paths:
-----------
    DART/trunk/models/lorenz_96/shell_scripts/run_filter.lynx.sh

-------------- next part --------------
Added: DART/trunk/models/lorenz_96/shell_scripts/run_filter.lynx.sh
===================================================================
--- DART/trunk/models/lorenz_96/shell_scripts/run_filter.lynx.sh	                        (rev 0)
+++ DART/trunk/models/lorenz_96/shell_scripts/run_filter.lynx.sh	2010-07-15 23:10:33 UTC (rev 4427)
@@ -0,0 +1,74 @@
+#!/bin/sh
+#
+# DART software - Copyright © 2004 - 2010 UCAR. This open source software is
+# provided by UCAR, "as is", without charge, subject to all terms of use at
+# http://www.image.ucar.edu/DAReS/DART/DART_download
+#
+# $Id$
+#
+# The general example run script is 'run_filter.csh' in this same
+# directory.  This is a specialized version of the script that runs
+# under MOAB/Torque on the NCAR Cray test system.
+#
+#
+# first, it appears this submit script must be bash or sh; csh doesn't work
+#
+# to submit this job:  qsub < run_filter.lynx
+# to check the queues: qstat
+#
+##=============================================================================
+# an explanation of the directives follows:
+# -N        job name
+# -e <arg>  filename for standard error
+# -o <arg>  filename for standard out 
+# -q <arg>  queue name
+# -l mppwidth=xx:walltime=hh:mm:ss    
+#           xx is number of mpi tasks, walltime is max run time.
+##=============================================================================
+#PBS -N filter
+#PBS -e filter.err
+#PBS -o filter.log
+#PBS -q regular
+#PBS -l mppwidth=4,walltime=00:30:00
+
+echo 'Starting execution of the run_filter script for the Lorenz 96 model.'
+echo " "
+
+# this script appears to start executing in your home dir.
+echo starting directory is `pwd`
+echo " "
+
+# cd down to where the executables were built.
+cd DART/models/lorenz_96/work
+echo current working directory now `pwd`
+echo " "
+
+# the home directories are NOT mounted on the execution nodes,
+# so everything you need must be copied over to /ptmp BEFORE
+# starting filter.   (they are visible from the head node that is
+# running this script, but once you start aprun, you must have
+# your executables and data files under /ptmp.)
+cp -fv filter input.nml obs_seq.out filter_ics  /ptmp/${LOGNAME}/work
+echo " "
+
+cd /ptmp/${PBS_O_LOGNAME}/work
+echo current working directory now `pwd`
+echo " "
+
+echo ensuring the 4 files required to run this job are here:
+ls -l filter input.nml obs_seq.out filter_ics
+echo " "
+
+# and now, run with 4 MPI tasks
+aprun -n 4 ./filter
+
+# the log files will be written to whatever dir this script 
+# was originally submitted from.
+
+echo " "
+echo 'Ending execution of the run_filter script for the Lorenz 96 model.'
+echo " "
+
+exit 0
+
+


Property changes on: DART/trunk/models/lorenz_96/shell_scripts/run_filter.lynx.sh
___________________________________________________________________
Added: svn:executable
   + *
Added: svn:mime-type
   + text/plain
Added: svn:keywords
   + Date Rev Author HeadURL Id
Added: svn:eol-style
   + native