<div dir="ltr">Dear Lia,<div><br></div><div>Do you have any error log? </div><div>I think your problem could how you submit your job, I have never used the flags you are using, so I search for them and I couldn't find the -d.</div>
<div><br></div><div>So you should try with:</div><div><br></div><div><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px">qsub –l walltime=48:00:00 –l mem=244mb /global/scratch/chunchao/WRF/</span><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px">WRFV3/test/em_real filename.csh</span><br>
</div><div><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px"><br></span></div><div><font color="#000000"><span style="font-family:Cambria,serif;font-size:16px">or if you are in the same folder of </span><span style="font-family:Cambria,serif;font-size:16px">filename.csh</span></font></div>
<div><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px"><br></span></div><div><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px">qsub –l walltime=48:00:00 –l mem=244mb </span><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px">filename.csh</span><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px"><br>
</span></div><div><span style="color:rgb(192,0,0);font-family:Cambria,serif;font-size:16px"><br></span></div><div><span style="color:rgb(0,0,0);font-family:Cambria,serif;font-size:16px">As an example, here it's my script for running wrf. It's made for running in parallel with openmpi.</span><br>
</div><div><span style="color:rgb(0,0,0);font-family:Cambria,serif;font-size:16px"><br></span></div><div><span style="color:rgb(0,0,0);font-family:Cambria,serif;font-size:16px"><div>#!/bin/bash</div><div>#</div><div>#$ -N WRF_run_name</div>
<div>#$ -S /bin/bash</div><div>#$ -cwd</div><div>#$ -j y</div><div>#$ -m abes</div><div>#$ -M <a href="mailto:your@mail.com">your@mail.com</a></div><div>#$ -pe orte 32</div>
<div>#</div><div>/opt/openmpi/1.6.4/bin/mpirun -np $NSLOTS ./wrf.exe</div><div><br></div></span></div><div><span style="color:rgb(0,0,0);font-family:Cambria,serif;font-size:16px">Good luck!</span><br></div><div><br></div>
<div><br></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">2014-04-16 16:38 GMT-03:00 Lia Pervin <span dir="ltr"><<a href="mailto:plia@ualberta.ca" target="_blank">plia@ualberta.ca</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-family:georgia,serif;color:rgb(32,18,77)"><p class="MsoNormal">Dear Sir,</p>
<p class="MsoNormal">Good afternoon. I am trying to submit a job with
the following commands, but it is not working. I would appreciate if you could help me in
this regard. </p>
<p class="MsoNormal">What is wrong here? Script:</p><p class="MsoNormal"><br></p>
<p class="MsoNormal"><span lang="EN-CA" style="font-size:12pt;font-family:'Times New Roman',serif">#!/bin/csh</span></p>
<p class="MsoNormal"><span style="font-size:7.5pt;font-family:'Courier New'">./wrf.exe >& wrf.log</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:12pt;font-family:'Times New Roman',serif"><br></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:12pt;font-family:'Times New Roman',serif">Command:</span></p>
<p class="MsoNormal" style="background-repeat:initial initial"><span style="font-size:12pt;font-family:Cambria,serif;color:rgb(192,0,0)">chmod +rwx
filename.csh </span><span style="font-size:10pt;font-family:Arial,sans-serif;color:rgb(34,34,34)"></span></p>
<p class="MsoNormal" style="background-repeat:initial initial"><span style="font-size:12pt;font-family:Cambria,serif;color:rgb(192,0,0)">qsub –l
walltime=48:00:00 –l mem=244mb –d
/global/scratch/chunchao/WRF/WRFV3/test/em_real filename.csh</span><span style="font-size:10pt;font-family:Arial,sans-serif;color:rgb(34,34,34)"></span></p></div><div><div dir="ltr"><div><div><div><div><p><span style="font-family:georgia,serif"><b><font><br>
</font></b></span></p><p><span style="font-family:georgia,serif"><b><font></font></b></span></p><div class="gmail_default" style="font-family:georgia,serif;color:rgb(32,18,77);display:inline"><b><font>Kind regards</font></b></div>
<b><font><br></font></b><p></p><p><span style="font-family:georgia,serif"><b><font>Lia Pervin</font></b></span><span style="font-family:'Times New Roman',serif"></span></p><p><span style="font-family:georgia,serif"><span style="color:rgb(0,0,255)">PhD Student</span></span></p>
<p><span style="font-family:georgia,serif"><span style="color:rgb(76,17,48)">Department of Civil and Environmental Engineering</span></span></p><p><span style="font-family:georgia,serif"><span style="color:rgb(153,0,255)">Office: NREF L 1-006</span></span></p>
<p><span style="font-family:georgia,serif"><span style="color:rgb(0,0,255)">University of Alberta</span></span></p><span style="font-family:georgia,serif"><span style="color:rgb(191,144,0)"><span style="color:rgb(0,0,255)">Mobile:</span> <a value="+15877784543">+1 5877104165 </a></span><br>
</span></div></div></div></div><br></div></div>
</div>
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