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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Dear all<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>we recently had the same problem.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>We had compiled mpi and wrf with the latest available version of intel<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>and when trying to run the model was hanging.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>We found out that the problem was that we has only installed 64-bit intel<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>(as our system is 64-bit, an amd-phaenom) but indeed<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>installation of 32-bit on the same system was also needed.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Once we installed the 32-bit<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>without any recompilation the model was running OK.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Bizar but that is what happened to us.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>best<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Vasso<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>------------------------------------------------------------------------------------<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>Dr. Vassiliki KOTRONI<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>Institute of Environmental Research<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>National Observatory of Athens<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>Lofos Koufou, P. Pendeli, GR-15236<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>Athens, Greece<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>Tel: +30 2 10 8109126<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>Fax: +30 2 10 8103236<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'>Daily weather forecasts at:<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'><a href="http://www.noa.gr/forecast"><span style='color:blue'>www.noa.gr/forecast</span></a> (in english)<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'><a href="http://www.meteo.gr"><span style='color:blue'>www.meteo.gr</span></a> (in greek)<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.5pt;font-family:"Century","serif";color:#1F497D'><a href="http://www.eurometeo.gr"><span style='color:blue'>www.eurometeo.gr</span></a><o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> wrf-users-bounces@ucar.edu [mailto:wrf-users-bounces@ucar.edu] <b>On Behalf Of </b>Don Morton<br><b>Sent:</b> 28 March 2011 21:55<br><b>To:</b> Jatin Kala<br><b>Cc:</b> wrf-users@ucar.edu<br><b>Subject:</b> Re: [Wrf-users] WRF is "hanging"<o:p></o:p></span></p></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>I have run into these kinds of issues a number of times. In one case, it was buggy implementation of MPI, in the scatterv() call, and switching to openmpi fixed the problem. In other cases, there were simply bad nodes on the machine. My own theory (may be completely wrong) is that these things hangs very frequently occur while the master task is scattering stuff to all the slaves. This is seems to be a good operation for stressing MPI and/or node communications. I have found that these kinds of problems are often (but not always) intermittent, and sometimes reducing the number of tasks will get it running (presumably because you're not stressing the underlying software and hardware infrastructure.<o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>To date, I've never found these to be "WRF" problems.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Good luck!<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal style='margin-bottom:12.0pt'>Don<o:p></o:p></p><div><p class=MsoNormal>On Fri, Mar 25, 2011 at 11:19 PM, Jatin Kala <<a href="mailto:J.Kala@murdoch.edu.au">J.Kala@murdoch.edu.au</a>> wrote:<o:p></o:p></p><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'>Thanks for the suggestion Feng, but this is not related to namelist inputs. The namelist I am running worked fine on a different machine.</span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'>The issue here is that WRF simply hangs and does nothing at initialisation of Grid 2. Ie, the rsl.out and rsl.error files print out:</span><span lang=EN-AU><o:p></o:p></span></p><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>d01 2009-10-01_00:00:00 alloc_space_field: domain 2, 84045408 b<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> ytes allocated<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> d01 2009-10-01_00:00:00 alloc_space_field: domain 2, 3084672 b<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> ytes allocated<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input file. **<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> *<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p></div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'>and that’s it. The rsl.error and rsl.out files do not keep growing in size, there are no more prints, they just stop printing stuff. The job however is still in the queue and does NOT error out, until the walltime is elapsed. No wrfout_d0* files are created. </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'>Other people seem to have had this issue before:</span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'><a href="http://mailman.ucar.edu/pipermail/wrf-users/2010/001749.html" target="_blank">http://mailman.ucar.edu/pipermail/wrf-users/2010/001749.html</a> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'><a href="http://mailman.ucar.edu/pipermail/wrf-users/2010/001747.html" target="_blank">http://mailman.ucar.edu/pipermail/wrf-users/2010/001747.html</a> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'>Any help more than welcome.</span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'>Regards,</span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'>Jatin </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><b><span style='font-size:10.0pt'>From:</span></b><span style='font-size:10.0pt'> Feng Liu [mailto:<a href="mailto:FLiu@azmag.gov" target="_blank">FLiu@azmag.gov</a>] <br><b>Sent:</b> Saturday, 26 March 2011 9:04 AM<br><b>To:</b> Jatin Kala; <a href="mailto:wrf-users@ucar.edu" target="_blank">wrf-users@ucar.edu</a><br><b>Subject:</b> RE: WRF is "hanging"</span><span lang=EN-AU><o:p></o:p></span></p></div></div><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span style='color:#1F497D'>Hi Jatin,</span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span style='color:#1F497D'>I do not know exactly what is wrong for your case, but one thing you can try is to reduce time_step in namelist.input by 3 times. Good luck.</span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span style='color:#1F497D'>Feng</span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span style='color:#1F497D'> </span><span lang=EN-AU><o:p></o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><b><span style='font-size:10.0pt'>From:</span></b><span style='font-size:10.0pt'> <a href="mailto:wrf-users-bounces@ucar.edu" target="_blank">wrf-users-bounces@ucar.edu</a> [mailto:<a href="mailto:wrf-users-bounces@ucar.edu" target="_blank">wrf-users-bounces@ucar.edu</a>] <b>On Behalf Of </b>Jatin Kala<br><b>Sent:</b> Thursday, March 24, 2011 7:29 PM<br><b>To:</b> <a href="mailto:wrf-users@ucar.edu" target="_blank">wrf-users@ucar.edu</a><br><b>Subject:</b> [Wrf-users] WRF is "hanging"</span><span lang=EN-AU><o:p></o:p></span></p></div></div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <span lang=EN-AU><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>Dear WRF-users,<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>I have compiled WRF3.2 on our new supercomputing facility, and having some trouble. Namely, WRF is just “hanging” at:<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>d01 2009-10-01_00:00:00 alloc_space_field: domain 2, 84045408 b<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> ytes allocated<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> d01 2009-10-01_00:00:00 alloc_space_field: domain 2, 3084672 b<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> ytes allocated<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> d01 2009-10-01_00:00:00 *** Initializing nest domain # 2 from an input file. **<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> *<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> d01 2009-10-01_00:00:00 med_initialdata_input: calling input_input<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>The job remains in the queue, i.e, does not error out until walltime is elapsed.<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>I have compiled with –O0 but that did not help. I have also compiled with the updated “gen_allocs.c” form the WRF website, but that has not helped either. I did do a “clean –a” before.<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>I have compiled WRF with the follows libs:<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>intel-compilers/2011.1.107<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>jasper/1.900.1<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>ncarg/5.2.1<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>mpi/intel/openmpi/1.4.2-qlc<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>netcdf/4.0.1/intel-2011.1.107<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>export WRFIO_NCD_LARGE_FILE_SUPPORT=1<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>Any help would be greatly appreciated!<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>Kind regards,<o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-AU>Jatin <o:p></o:p></span></p></div></div></div></div><p class=MsoNormal style='margin-bottom:12.0pt'><br>_______________________________________________<br>Wrf-users mailing list<br><a href="mailto:Wrf-users@ucar.edu">Wrf-users@ucar.edu</a><br><a href="http://mailman.ucar.edu/mailman/listinfo/wrf-users" target="_blank">http://mailman.ucar.edu/mailman/listinfo/wrf-users</a><o:p></o:p></p></div><p class=MsoNormal><br><br clear=all><br>-- <o:p></o:p></p><div><p class=MsoNormal>Voice: 907 450 8679<o:p></o:p></p></div><p class=MsoNormal>Arctic Region Supercomputing Center<br><a href="http://weather.arsc.edu/" target="_blank">http://weather.arsc.edu/</a><o:p></o:p></p><div><p class=MsoNormal><a href="http://www.arsc.edu/~morton/" target="_blank">http://www.arsc.edu/~morton/</a><o:p></o:p></p></div><p class=MsoNormal><o:p> </o:p></p></div></div></body></html>