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<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>Hi Wrf-users
!</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>I'm trying to run
the WRF model on a Linux cluster (intel processors)</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>Successfully created
real.exe,wrf.exe</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>./real.exe worked
fine</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>mpirun -np 4
./wrf.exe runs for 2 time steps and aborts. Fort.98 has OUT OF BOUNDS and
nan's.</STRONG></SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006><STRONG></STRONG></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>I've tried
with mpirun -np 1 ./wrf.exe and it works FINE</STRONG>.</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>Could you tell me
what is causing the problem ?</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>COMPILER SWITCHES
and other system related info is given below. Also, included here is
the</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>rsl.out.0000 output
and a few lines of fort.98 output.</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006>**********************************************************************************************************************************************************</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>setenv
MP_STACK_SIZE 64000000<BR>setenv WRF_EM_CORE 1<BR>limit stacksize
unlimited</STRONG></SPAN></FONT></DIV>
<DIV><STRONG></STRONG> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>mpif90
-V = pgf90 5.2-2<BR>netcdf =
netcdf-3.6.1_GCC_PGI5.2 (portland group
compiler-fortran)<BR>mpich = mpich2-1.0.3_GCC_PGI5.2<BR>mpich =
mpich-1.2.7p1_GCC_PGI5.2 (tried with this version
also)</STRONG></SPAN></FONT></DIV>
<DIV><STRONG></STRONG> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>WRF =
WRFV2.1.2<BR>wrfsi = wrfsi_v2.1.2</STRONG></SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>uname -rs =
Linux 2.6.9-34.0.1.ELsmp</STRONG></SPAN></FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>#### Architecture
specific settings ####</SPAN></FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006># Settings for PC
Linux i486 i586 i686, PGI compiler DM-Parallel (RSL, MPICH, Allows
nesting<BR>)<BR>#<BR># Notes: for experimental implementation of moving nests,
add -DMOVE_NESTS to ARCHFLAGS<BR># for
experimental implementation of vortex tracking nests, add -DMOVE_NESTS
-DVORTEX_<BR>CENTER to ARCHFLAGS<BR>#</SPAN></FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006>DMPARALLEL
=
1<BR>MAX_PROC
=
1024<BR>FC
= /rstor17/sriki/mpich-1.2.7p1/bin/mpif90
-f90=pgf90 -Bstatic <STRONG>(with and without static
option)</STRONG><BR>LD
= /rstor17/sriki/mpich-1.2.7p1/bin/mpif90
-f90=pgf90 -Bstatic (<STRONG>with and without static
option)</STRONG><BR>CC
= /rstor17/sriki/mpich-1.2.7p1/bin/mpicc
-cc=gcc -static
-DMPI2_SUPPORT<BR> -DFSEEKO64_OK<BR>SCC
=
gcc<BR>SFC
=
pgf90<BR>RWORDSIZE
=
$(NATIVE_RWORDSIZE)<BR>PROMOTION
= -r$(RWORDSIZE)
-i4<BR>CFLAGS
= -DDM_PARALLEL -DWRF_RSL_IO
\<BR>
-DMAXDOM_MAKE=$(MAX_DOMAINS) -DMAXPROC_MAKE=$(MAX_PROC)
-I../external<BR>/RSL/RSL
\<BR>
-I/rstor17/sriki/mpich-1.2.7p1/include<BR>FCOPTIM
= -O2 # -fast # ALSO TRIED WITH
-O0<BR>FCDEBUG
=
#-g<BR>#FCBASEOPTS
= -w -byteswapio -Ktrap=fp -Mfree -tp p6
$(FCDEBUG)<BR>FCBASEOPTS
= -w -byteswapio -Mfree -tp p6 $(FCDEBUG) #
-Mlfs<BR>FCFLAGS
= $(FCOPTIM)
$(FCBASEOPTS)<BR>ARCHFLAGS
= -DDEREF_KLUDGE -DIO_DEREF_KLUDGE -DGRIB1
-DINTIO -DWRF_RSL_IO -DRSL -<BR>DDM_PARALLEL \</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>-DIWORDSIZE=4
-DDWORDSIZE=8 -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=4 -D<BR>NETCDF
\<BR>
-DTRIEDNTRUE
\<BR>
-DLIMIT_ARGS<BR>INCLUDE_MODULES = -module
../main -I../external/io_netcdf -I../external/io_int
-I../ext<BR>ernal/esmf_time_f90
\<BR>
-I../external -I../frame -I../share -I../phys -I../chem -I../inc
\<BR>
/rstor17/sriki/mpich-1.2.7p1/include<BR>PERL
=
perl<BR>REGISTRY
=
Registry<BR>LIB
= -L../external/io_netcdf -lwrfio_nf
-L/usr/local/netcdf/lib -lnetcdf -<BR>L../external/RSL/RSL -lrsl
\<BR>
-L../external/io_grib1 -lio_grib1
\<BR>
-L../external/io_int -lwrfio_int
\<BR>
-L/rstor17/sriki//mpich-1.2.7p1/lib -lmpichf90
\<BR>
../frame/module_internal_header_util.o ../frame/pack_utils.o
-L../ext<BR>ernal/esmf_time_f90
-lesmf_time<BR>LDFLAGS
= -byteswapio
$(FCFLAGS)<BR>ENVCOMPDEFS
=<BR>WRF_CHEM
=
0<BR>CPP
= /lib/cpp -C -P
-traditional<BR>POUND_DEF
= -DNO_RRTM_PHYSICS -traditional
$(COREDEFS) -DNONSTANDARD_SYSTEM -DF9<BR>0_STANDALONE
-DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN)
-DMAX_DOMAINS_F=$(MAX_DOMAINS)<BR>CPPFLAGS
= -I$(LIBINCLUDE) -C -P $(ARCHFLAGS)
-I../external/RSL/RSL -C -P `cat .<BR>./inc/dm_comm_cpp_flags` $(ENVCOMPDEFS)
$(POUND_DEF)<BR>AR
= ar
ru<BR>M4
=
m4<BR>RANLIB
=
ranlib<BR>NETCDFPATH
=
/usr/local/netcdf<BR>CC_TOOLS
=
cc<BR>*********************************************************************************************<BR>********************<BR><STRONG>mpirun
-np 4 ./wrf.exe</STRONG></SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006><STRONG></STRONG></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>The program aborts
with the following message:</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>rm_l_2_19671:
(28.535918) net_send: could not write to fd=5, errno =
32</SPAN></FONT></DIV><BR>tail rsl.out.0000 </STRONG></SPAN></FONT></DIV>
<DIV><STRONG></STRONG> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>
STEPRA,STEPCU,STEPBL
7
3 1<BR>Timing
for Writing wrfout_d01_2005-11-20_06:00:00 for
domain 1: 4.25400
elapsed sec<BR>onds.<BR>Timing for processing lateral boundary for
domain 1: 0.84300
elapsed seconds.<BR> WRF NUMBER OF TILES = 1<BR>Timing for
main: time 2005-11-20_06:01:30 on domain 1: 16.37400
elapsed seconds.<BR>Timing for main: time 2005-11-20_06:03:00 on
domain 1: 5.29800 elapsed
seconds.</SPAN></FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><STRONG>more
fort.98</STRONG></SPAN></FONT></DIV>
<DIV><STRONG></STRONG> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006><BR> **** OUT
OF BOUNDS *********<BR> **** OUT OF BOUNDS *********<BR> **** OUT OF
BOUNDS *********<BR> **** OUT OF BOUNDS *********<BR> LFS,LDB,LDT =
26 24 24 TIMEC, TADVEC, NSTEP= 3600. 4308. 2NCOUNT, FABE, AINC= 1
1.000 na<BR>n</SPAN></FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006> P(LC), DTP,
WKL, WKLCL =
590.3015
-nan -1.8851364E-02<BR> 2.0000000E-02<BR> TLCL, DTLCL,
DTRH, TENV = 266.8293
0.0000000
0.0000000<BR>
-nan<BR> KLCL=25 ZLCL= 5248.4M DTLCL= 0.00 LTOP=36
P0(LTOP)=122.8MB FRZ LV= 0 TMIX=-0.7 PMIX= 57<BR>7.0 QMIX= 4.5
CAPE= nan<BR> P0(LET) = 122.8 P0(LTOP) =
122.8 VMFLCL = -nan PLCL = -nan
WLCL = 1.000 CLDHGT = <BR>10237.9<BR> PEF(WS)=0.90(CB)=0.31LC,LET= 23
36WKL=-0.019VWS= 0.66<BR> PRECIP EFFICIENCY
=
nan<BR> LFS,LDB,LDT = 26 24 24 TIMEC, TADVEC, NSTEP= 3600. 4308.
2NCOUNT, FABE, AINC= 1 1.000 na<BR>n<BR>
P DP DT K/D DR
K/D OMG DOMGDP
UMF UER
UDR DMF
DER DD<BR>R
EMS W0 DETLQ
DETIC<BR> just before DO 300...<BR> 122.76 45.42
-17.29 -nan
nan nan 0.00
0.000 -nan 0.00
0.000 0.<BR>000 6.000
0.852 nan nan<BR>
168.13 45.42 26.98
-nan nan nan
-nan -nan -nan
0.00 0.000 0.<BR>000 6.000
1.578 nan
nan<BR> <BR>*********************************************************************************************<BR>****</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN
class=487324020-14092006>Thanks</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=487324020-14092006>Jayanthi</DIV>
<DIV><BR></DIV>
<DIV><BR><BR></DIV></SPAN></FONT></BODY></HTML>